Query psy13685
Match_columns 72
No_of_seqs 113 out of 529
Neff 5.5
Searched_HMMs 13730
Date Fri Aug 16 17:51:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13685.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13685hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pbyc_ a.137.9.1 (C:) Quinohe 31.2 7.3 0.00053 21.6 0.8 15 15-29 12-27 (79)
2 d1jmxg_ a.137.9.1 (G:) Quinohe 30.0 7.4 0.00054 21.5 0.7 15 15-29 10-25 (77)
3 d2g0ta1 c.37.1.10 (A:1-338) Hy 29.0 5.1 0.00037 27.6 -0.2 28 23-60 194-221 (338)
4 d1q0qa2 c.2.1.3 (A:1-125,A:275 25.9 6.5 0.00047 23.8 -0.1 10 47-56 142-151 (151)
5 d1qyda_ c.2.1.2 (A:) Pinoresin 20.9 25 0.0018 20.9 2.0 27 39-65 182-208 (312)
6 d2a5yb1 a.4.5.80 (B:386-543) C 19.0 8.7 0.00063 23.2 -0.5 11 49-59 27-37 (158)
7 d1wgya_ d.15.1.5 (A:) Rap guan 15.8 28 0.002 20.0 1.3 31 37-67 12-42 (104)
8 d1i24a_ c.2.1.2 (A:) Sulfolipi 13.7 66 0.0048 20.2 2.9 34 33-66 248-281 (393)
9 d1uuza_ d.233.1.1 (A:) Inhibit 11.6 28 0.002 20.7 0.4 17 12-28 26-42 (130)
10 d1koea_ d.169.1.5 (A:) Endosta 11.0 49 0.0036 19.8 1.4 41 3-46 1-49 (172)
No 1
>d1pbyc_ a.137.9.1 (C:) Quinohemoprotein amine dehydrogenase C chain {Paracoccus denitrificans [TaxId: 266]}
Probab=31.21 E-value=7.3 Score=21.61 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=11.8
Q ss_pred ccce-ecCCCCcccee
Q psy13685 15 IAGY-IDNLYGPTGLV 29 (72)
Q Consensus 15 ~PGW-iDn~~G~~gl~ 29 (72)
-||| +|.+-|..+|+
T Consensus 12 dPGWEvD~fGGva~LC 27 (79)
T d1pbyc_ 12 DPGWEVDAFGAVSNLC 27 (79)
T ss_dssp SSBSSSBTTSSSTTSC
T ss_pred CCCceecCCccHhhcc
Confidence 3799 78888888775
No 2
>d1jmxg_ a.137.9.1 (G:) Quinohemoprotein amine dehydrogenase C chain {Pseudomonas putida [TaxId: 303]}
Probab=29.97 E-value=7.4 Score=21.49 Aligned_cols=15 Identities=27% Similarity=0.521 Sum_probs=11.6
Q ss_pred ccce-ecCCCCcccee
Q psy13685 15 IAGY-IDNLYGPTGLV 29 (72)
Q Consensus 15 ~PGW-iDn~~G~~gl~ 29 (72)
-||| +|.+-|..+|+
T Consensus 10 dPGWEvD~fGGva~LC 25 (77)
T d1jmxg_ 10 DPGWEVDAFGGVSSLC 25 (77)
T ss_dssp SSCSSSCTTSSSSSSC
T ss_pred CCCceecCCccHhhcc
Confidence 3788 78888888775
No 3
>d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga maritima [TaxId: 2336]}
Probab=28.98 E-value=5.1 Score=27.57 Aligned_cols=28 Identities=43% Similarity=0.749 Sum_probs=22.9
Q ss_pred CCccceeeccccceEEEEeeCCCccCceehhHHHHHHH
Q psy13685 23 YGPTGLVTGVQAGIIRCISNARHIKADMVPADYVVNAL 60 (72)
Q Consensus 23 ~G~~gl~~~~g~G~lr~~~~~~~~~~D~VPVD~vvn~l 60 (72)
.|.||++.+...|+ ..|-+|+|+++-++
T Consensus 194 TGQTGili~g~~Gv----------~~Dav~~DfvaGav 221 (338)
T d2g0ta1 194 TGQTGILIGADAGY----------VIDAVPADFVSGVV 221 (338)
T ss_dssp CSHHHHHTTCSEEC----------CGGGSBGGGHHHHH
T ss_pred cCCeeEeeccccce----------ecCcchhhhhHHHH
Confidence 37888888876777 88999999998764
No 4
>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}
Probab=25.88 E-value=6.5 Score=23.76 Aligned_cols=10 Identities=20% Similarity=0.604 Sum_probs=7.8
Q ss_pred cCceehhHHH
Q psy13685 47 KADMVPADYV 56 (72)
Q Consensus 47 ~~D~VPVD~v 56 (72)
...++|||+|
T Consensus 142 ~~~IiPVD~~ 151 (151)
T d1q0qa2 142 NSGVKPLDFC 151 (151)
T ss_dssp CCSCCCCCTT
T ss_pred CCcEEcCcCC
Confidence 3579999985
No 5
>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}
Probab=20.91 E-value=25 Score=20.89 Aligned_cols=27 Identities=22% Similarity=0.004 Sum_probs=22.0
Q ss_pred EEeeCCCccCceehhHHHHHHHHHHHH
Q psy13685 39 CISNARHIKADMVPADYVVNALICCTW 65 (72)
Q Consensus 39 ~~~~~~~~~~D~VPVD~vvn~lI~aa~ 65 (72)
.++++.+...++|.+|=++++++.+.-
T Consensus 182 ~~~~~g~~~~~~i~v~Dva~a~~~~l~ 208 (312)
T d1qyda_ 182 LIYGDGNVKGIWVDEDDVGTYTIKSID 208 (312)
T ss_dssp CCBTTSCSEEEEECHHHHHHHHHHHTT
T ss_pred ccccccccccceeeHHHHHHHHHHHhc
Confidence 356778888999999999999887753
No 6
>d2a5yb1 a.4.5.80 (B:386-543) Cell death protein 4, CED-4 {Caenorhabditis elegans [TaxId: 6239]}
Probab=18.97 E-value=8.7 Score=23.25 Aligned_cols=11 Identities=27% Similarity=0.486 Sum_probs=3.8
Q ss_pred ceehhHHHHHH
Q psy13685 49 DMVPADYVVNA 59 (72)
Q Consensus 49 D~VPVD~vvn~ 59 (72)
-+||||+|.|-
T Consensus 27 cvipvdicsne 37 (158)
T d2a5yb1 27 CVIPVDICSNE 37 (158)
T ss_dssp HHSCC------
T ss_pred EeeeeeecCCh
Confidence 36899999884
No 7
>d1wgya_ d.15.1.5 (A:) Rap guanine nucleotide exchange factor 5, RapGEF5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.85 E-value=28 Score=19.96 Aligned_cols=31 Identities=0% Similarity=-0.049 Sum_probs=26.0
Q ss_pred EEEEeeCCCccCceehhHHHHHHHHHHHHhh
Q psy13685 37 IRCISNARHIKADMVPADYVVNALICCTWDG 67 (72)
Q Consensus 37 lr~~~~~~~~~~D~VPVD~vvn~lI~aa~~~ 67 (72)
.|+...|.....=.+||+..+..++.++.+.
T Consensus 12 ~~VY~~Dhsy~tlr~~v~~sa~eI~~~vaeK 42 (104)
T d1wgya_ 12 CHVYITEHSYVSVKAKVSSIAQEILKVVAEK 42 (104)
T ss_dssp EEEECSSSCEEEECCCTTCBSHHHHHHHHHH
T ss_pred EEEEecCCcEEEEEeeccCcHHHHHHHHHHH
Confidence 4666777777778999999999999999874
No 8
>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=13.69 E-value=66 Score=20.16 Aligned_cols=34 Identities=6% Similarity=-0.060 Sum_probs=27.0
Q ss_pred ccceEEEEeeCCCccCceehhHHHHHHHHHHHHh
Q psy13685 33 QAGIIRCISNARHIKADMVPADYVVNALICCTWD 66 (72)
Q Consensus 33 g~G~lr~~~~~~~~~~D~VPVD~vvn~lI~aa~~ 66 (72)
..|---.+++|.+.+-|++.||=++++++.+.-+
T Consensus 248 ~~~~~~~i~g~~~~~rd~v~v~D~~~a~~~~~~~ 281 (393)
T d1i24a_ 248 AVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIAN 281 (393)
T ss_dssp HHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHS
T ss_pred hcCCeeEEeeecccccccccccchHHHHHHHHHh
Confidence 4454456678999999999999999998877653
No 9
>d1uuza_ d.233.1.1 (A:) Inhibitor of vertebrate lysozyme, Ivy {Pseudomonas aeruginosa [TaxId: 287]}
Probab=11.62 E-value=28 Score=20.74 Aligned_cols=17 Identities=12% Similarity=0.450 Sum_probs=13.5
Q ss_pred CCCccceecCCCCccce
Q psy13685 12 SDPIAGYIDNLYGPTGL 28 (72)
Q Consensus 12 ~EP~PGWiDn~~G~~gl 28 (72)
++.+|+|+-+.+|...=
T Consensus 26 ~~~LP~WV~~g~GtssP 42 (130)
T d1uuza_ 26 ESDVPKWVSDASGPSSP 42 (130)
T ss_dssp CCSCCHHHHTTCSCBCC
T ss_pred cccCcHHHHhCCCCCCC
Confidence 57899999998876643
No 10
>d1koea_ d.169.1.5 (A:) Endostatin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.99 E-value=49 Score=19.78 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=26.0
Q ss_pred cccEEEeecCCCccceecCCCCccceeecc--------ccceEEEEeeCCCc
Q psy13685 3 AYKSVISTWSDPIAGYIDNLYGPTGLVTGV--------QAGIIRCISNARHI 46 (72)
Q Consensus 3 RPsIV~~~~~EP~PGWiDn~~G~~gl~~~~--------g~G~lr~~~~~~~~ 46 (72)
+|+.=..+..||+.| |+.|+.|-=.-| ..|..|-++.+...
T Consensus 1 ~~~l~l~al~~p~~G---nlgGi~GAD~~C~~~A~~~g~~gtykA~Ls~~~~ 49 (172)
T d1koea_ 1 QPVLHLVALNTPLSG---GMRGIRGADFQCFQQARAVGLSGTFRAFLSSRLQ 49 (172)
T ss_dssp CCCEEEEECSSCBCS---CSSHHHHHHHHHHHHHHHTTCCSCEEESCCBTTB
T ss_pred CCceEEEEecCCcCC---CcCCchhHHHHHHhhhhccCCCCcceEEEeeccc
Confidence 466667788999999 666654432222 25677777766543
Done!