RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13685
         (72 letters)



>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif,
           rossmann fold, short chain dehydrogenase/REDU family,
           reductase; 2.30A {Mycobacterium tuberculosis}
          Length = 478

 Score = 29.1 bits (65), Expect = 0.075
 Identities = 4/18 (22%), Positives = 7/18 (38%)

Query: 49  DMVPADYVVNALICCTWD 66
           D +P  +V  A+      
Sbjct: 327 DGLPVTFVAEAIAVLGAR 344


>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase,
           quinon reduction, structural genomics, structural
           genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP:
           b.35.1.2 c.2.1.1
          Length = 351

 Score = 23.3 bits (51), Expect = 9.1
 Identities = 3/19 (15%), Positives = 7/19 (36%)

Query: 49  DMVPADYVVNALICCTWDG 67
           +M+    +   L   +  G
Sbjct: 245 EMLANVNLSKDLSLLSHGG 263


>4eye_A Probable oxidoreductase; structural genomics, niaid, national
           institute of allergy AN infectious diseases; 2.10A
           {Mycobacterium abscessus}
          Length = 342

 Score = 23.3 bits (51), Expect = 9.8
 Identities = 3/19 (15%), Positives = 7/19 (36%)

Query: 49  DMVPADYVVNALICCTWDG 67
           D +      +A+     +G
Sbjct: 233 DPIGGPAFDDAVRTLASEG 251


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.138    0.450 

Gapped
Lambda     K      H
   0.267   0.0782    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,176,080
Number of extensions: 54911
Number of successful extensions: 167
Number of sequences better than 10.0: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 3
Length of query: 72
Length of database: 6,701,793
Length adjustment: 42
Effective length of query: 30
Effective length of database: 5,529,111
Effective search space: 165873330
Effective search space used: 165873330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)