RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13685
         (72 letters)



>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major
           [TaxId: 5664]}
          Length = 374

 Score = 22.0 bits (46), Expect = 9.7
 Identities = 6/49 (12%), Positives = 18/49 (36%), Gaps = 5/49 (10%)

Query: 19  IDNLYGPTGLVTGVQAGIIRCISNARHIKA-----DMVPADYVVNALIC 62
           ++        +T       R +++  H+       D+ P++ +   +I 
Sbjct: 303 VEIEEREPTEITTNLVTKQRVVADGPHLSIWNPVFDITPSELITGGIIT 351


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.138    0.450 

Gapped
Lambda     K      H
   0.267   0.0506    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 292,591
Number of extensions: 10455
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 5
Length of query: 72
Length of database: 2,407,596
Length adjustment: 40
Effective length of query: 32
Effective length of database: 1,858,396
Effective search space: 59468672
Effective search space used: 59468672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.4 bits)