BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13691
(103 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9JKP7|DPOE3_MOUSE DNA polymerase epsilon subunit 3 OS=Mus musculus GN=Pole3 PE=2
SV=1
Length = 145
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 65/95 (68%), Gaps = 4/95 (4%)
Query: 1 MAESLDDLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIA 60
MAE +DLNLP+A+I R+IKEALP +G +N+SK+ R A +AAS+F+L+ T+ A + A
Sbjct: 1 MAERPEDLNLPNAVITRIIKEALP---DG-VNISKEARSAISRAASVFVLYATSCANNFA 56
Query: 61 NEKNRKTLSGVDVIEGVKQIGFEVIIEILGKSYNA 95
+ RKTL+ DV+ ++++ F+ I L ++ A
Sbjct: 57 MKGKRKTLNASDVLSAMEEMEFQRFITPLKEALEA 91
>sp|Q5R4W3|DPOE3_PONAB DNA polymerase epsilon subunit 3 OS=Pongo abelii GN=POLE3 PE=2
SV=1
Length = 147
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 65/95 (68%), Gaps = 4/95 (4%)
Query: 1 MAESLDDLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIA 60
MAE +DLNLP+A+I R+IKEALP +G +N+SK+ R A +AAS+F+L+ T+ A + A
Sbjct: 1 MAERPEDLNLPNAVITRIIKEALP---DG-VNISKEARSAISRAASVFVLYATSCANNFA 56
Query: 61 NEKNRKTLSGVDVIEGVKQIGFEVIIEILGKSYNA 95
+ RKTL+ DV+ ++++ F+ + L ++ A
Sbjct: 57 MKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEA 91
>sp|Q9NRF9|DPOE3_HUMAN DNA polymerase epsilon subunit 3 OS=Homo sapiens GN=POLE3 PE=1
SV=1
Length = 147
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 65/95 (68%), Gaps = 4/95 (4%)
Query: 1 MAESLDDLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIA 60
MAE +DLNLP+A+I R+IKEALP +G +N+SK+ R A +AAS+F+L+ T+ A + A
Sbjct: 1 MAERPEDLNLPNAVITRIIKEALP---DG-VNISKEARSAISRAASVFVLYATSCANNFA 56
Query: 61 NEKNRKTLSGVDVIEGVKQIGFEVIIEILGKSYNA 95
+ RKTL+ DV+ ++++ F+ + L ++ A
Sbjct: 57 MKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEA 91
>sp|Q3SZN5|DPOE3_BOVIN DNA polymerase epsilon subunit 3 OS=Bos taurus GN=POLE3 PE=2 SV=1
Length = 147
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 65/95 (68%), Gaps = 4/95 (4%)
Query: 1 MAESLDDLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIA 60
MAE +DLNLP+A+I R+IKEALP +G +N+SK+ R A +AAS+F+L+ T+ A + A
Sbjct: 1 MAERPEDLNLPNAVITRIIKEALP---DG-VNISKEARSAISRAASVFVLYATSCANNFA 56
Query: 61 NEKNRKTLSGVDVIEGVKQIGFEVIIEILGKSYNA 95
+ RKTL+ DV+ ++++ F+ + L ++ A
Sbjct: 57 MKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEA 91
>sp|Q642A5|DPOE3_RAT DNA polymerase epsilon subunit 3 OS=Rattus norvegicus GN=Pole3
PE=2 SV=1
Length = 145
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 65/95 (68%), Gaps = 4/95 (4%)
Query: 1 MAESLDDLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIA 60
MAE +DLNLP+A+I R+IKEALP +G +N+SK+ R A +AAS+F+L+ T+ A + A
Sbjct: 1 MAERPEDLNLPNAVITRIIKEALP---DG-VNISKEARSAISRAASVFVLYATSCANNFA 56
Query: 61 NEKNRKTLSGVDVIEGVKQIGFEVIIEILGKSYNA 95
+ RKTL+ DV+ ++++ F+ + L ++ A
Sbjct: 57 MKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEA 91
>sp|Q75JQ9|DPOE3_DICDI DNA polymerase epsilon subunit 3 OS=Dictyostelium discoideum
GN=pole3 PE=3 SV=1
Length = 138
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 7/83 (8%)
Query: 1 MAESLDDLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIA 60
M+ES D LP AI+ R+IK +LP EG + +K+ RLA KAA ++I +LT ++ +
Sbjct: 1 MSESQD---LPGAIVNRIIKASLP---EG-VLCAKESRLAIAKAAKVWIHYLTAASIDFS 53
Query: 61 NEKNRKTLSGVDVIEGVKQIGFE 83
+ R T+S DV + +++I FE
Sbjct: 54 SHSGRSTISPKDVFQAIEEIDFE 76
>sp|Q750A4|DPB4_ASHGO DNA polymerase epsilon subunit D OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DPB4
PE=3 SV=1
Length = 204
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 55/91 (60%), Gaps = 8/91 (8%)
Query: 4 SLDDLNLPSAIIQRLIKEALPK-----DAEGKINVSKDVRLAAGKAASLFILHLTTEALS 58
++DDL P +II L K+A+ + + + ++ +SKD LA +++++F+ HL A
Sbjct: 66 TVDDLLFPRSIITSLAKDAVHQAVQTAEQDPRVMLSKDASLALQRSSTVFVNHLLMHARQ 125
Query: 59 IANEKNRKTLSGVDVIEGVKQI---GFEVII 86
IA +RK+ SG DV++ + QI GFE ++
Sbjct: 126 IAQSNDRKSCSGEDVLKALDQIGLAGFESVV 156
>sp|Q54WV0|NFYB_DICDI Nuclear transcription factor Y subunit beta OS=Dictyostelium
discoideum GN=nfyB PE=3 SV=1
Length = 490
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 7 DLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRK 66
D LP A I R++K+ALP +A+ V+KD + S FI +T+EA ++ RK
Sbjct: 50 DRYLPIANIIRIMKKALPNNAK----VAKDAKETVQDCVSEFISFITSEASDKCQQEKRK 105
Query: 67 TLSGVDVIEGVKQIGFEVIIEIL 89
T++G D+I + +GFE +E L
Sbjct: 106 TINGEDIIAAMVSLGFENYVEPL 128
>sp|P36611|HAP3_SCHPO Transcriptional activator hap3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=hap3 PE=3 SV=1
Length = 116
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 2 AESLDDLNL-PSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIA 60
A+ LD NL P A + R++K ALP++A+ +SK+ + S FI +T EA
Sbjct: 3 ADGLDYTNLLPIANVARIMKSALPENAK----ISKEAKDCVQDCVSEFISFVTGEASEQC 58
Query: 61 NEKNRKTLSGVDVIEGVKQIGFEVIIEIL 89
++ RKT++G DV+ + +GFE E+L
Sbjct: 59 TQEKRKTITGEDVLLALNTLGFENYAEVL 87
>sp|Q60EQ4|NFYB3_ORYSJ Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp.
japonica GN=NFYB3 PE=1 SV=2
Length = 185
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 7 DLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRK 66
D LP A I R++K+A+P A GKI +KD + + S FI +T+EA + RK
Sbjct: 40 DRFLPIANISRIMKKAIP--ANGKI--AKDAKETVQECVSEFISFITSEASDKCQREKRK 95
Query: 67 TLSGVDVIEGVKQIGFEVIIEIL 89
T++G D++ + +GFE IE L
Sbjct: 96 TINGDDLLWAMATLGFEDYIEPL 118
>sp|Q32KW0|NFYB_BOVIN Nuclear transcription factor Y subunit beta OS=Bos taurus GN=NFYB
PE=2 SV=1
Length = 207
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 4/83 (4%)
Query: 7 DLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRK 66
D+ LP A + R++K A+P+ GKI +KD + + S FI +T+EA +++ RK
Sbjct: 56 DIYLPIANVARIMKNAIPQ--TGKI--AKDAKECVQECVSEFISFITSEASERCHQEKRK 111
Query: 67 TLSGVDVIEGVKQIGFEVIIEIL 89
T++G D++ + +GF+ +E L
Sbjct: 112 TINGEDILFAMSTLGFDSYVEPL 134
>sp|Q6RG77|NFYB_HORSE Nuclear transcription factor Y subunit beta OS=Equus caballus
GN=NFYB PE=2 SV=1
Length = 207
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 4/83 (4%)
Query: 7 DLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRK 66
D+ LP A + R++K A+P+ GKI +KD + + S FI +T+EA +++ RK
Sbjct: 56 DIYLPIANVARIMKNAIPQ--TGKI--AKDAKECVQECVSEFISFITSEASERCHQEKRK 111
Query: 67 TLSGVDVIEGVKQIGFEVIIEIL 89
T++G D++ + +GF+ +E L
Sbjct: 112 TINGEDILFAMSTLGFDSYVEPL 134
>sp|P25209|NFYB_MAIZE Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2
SV=1
Length = 179
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 7 DLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRK 66
D LP A I R++K+A+P A GKI +KD + + S FI +T+EA + RK
Sbjct: 33 DRFLPIANISRIMKKAIP--ANGKI--AKDAKETVQECVSEFISFITSEASDKCQREKRK 88
Query: 67 TLSGVDVIEGVKQIGFEVIIEIL 89
T++G D++ + +GFE IE L
Sbjct: 89 TINGDDLLWAMATLGFEDYIEPL 111
>sp|Q5XI68|NC2B_RAT Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 SV=1
Length = 176
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 6 DDLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNR 65
DDL +P A I ++IKE LP + V+ D R + FI +++EA I N+ +
Sbjct: 9 DDLTIPRAAINKMIKETLPN-----VRVANDARELVVNCCTEFIHLISSEANEICNKSEK 63
Query: 66 KTLSGVDVIEGVKQIGF 82
KT+S VI+ ++ +GF
Sbjct: 64 KTISPEHVIQALESLGF 80
>sp|Q91WV0|NC2B_MOUSE Protein Dr1 OS=Mus musculus GN=Dr1 PE=2 SV=1
Length = 176
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 6 DDLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNR 65
DDL +P A I ++IKE LP + V+ D R + FI +++EA I N+ +
Sbjct: 9 DDLTIPRAAINKMIKETLPN-----VRVANDARELVVNCCTEFIHLISSEANEICNKSEK 63
Query: 66 KTLSGVDVIEGVKQIGF 82
KT+S VI+ ++ +GF
Sbjct: 64 KTISPEHVIQALESLGF 80
>sp|Q01658|NC2B_HUMAN Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1
Length = 176
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 6 DDLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNR 65
DDL +P A I ++IKE LP + V+ D R + FI +++EA I N+ +
Sbjct: 9 DDLTIPRAAINKMIKETLPN-----VRVANDARELVVNCCTEFIHLISSEANEICNKSEK 63
Query: 66 KTLSGVDVIEGVKQIGF 82
KT+S VI+ ++ +GF
Sbjct: 64 KTISPEHVIQALESLGF 80
>sp|Q5ZMV3|NC2B_CHICK Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1
Length = 176
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 6 DDLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNR 65
DDL +P A I ++IKE LP + V+ D R + FI +++EA I N+ +
Sbjct: 9 DDLTIPRAAINKMIKETLPN-----VRVANDARELVVNCCTEFIHLISSEANEICNKSEK 63
Query: 66 KTLSGVDVIEGVKQIGF 82
KT+S VI+ ++ +GF
Sbjct: 64 KTISPEHVIQALESLGF 80
>sp|P25208|NFYB_HUMAN Nuclear transcription factor Y subunit beta OS=Homo sapiens GN=NFYB
PE=1 SV=2
Length = 207
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 4/83 (4%)
Query: 7 DLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRK 66
D+ LP A + R++K A+P+ GKI +KD + + S FI +T+EA +++ RK
Sbjct: 56 DIYLPIANVARIMKNAIPQ--TGKI--AKDAKECVQECVSEFISFITSEASERCHQEKRK 111
Query: 67 TLSGVDVIEGVKQIGFEVIIEIL 89
T++G D++ + +GF+ +E L
Sbjct: 112 TINGEDILFAMSTLGFDSYVEPL 134
>sp|P63140|NFYB_RAT Nuclear transcription factor Y subunit beta OS=Rattus norvegicus
GN=Nfyb PE=1 SV=1
Length = 207
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 4/83 (4%)
Query: 7 DLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRK 66
D+ LP A + R++K A+P+ GKI +KD + + S FI +T+EA +++ RK
Sbjct: 56 DIYLPIANVARIMKNAIPQ--TGKI--AKDAKECVQECVSEFISFITSEASERCHQEKRK 111
Query: 67 TLSGVDVIEGVKQIGFEVIIEIL 89
T++G D++ + +GF+ +E L
Sbjct: 112 TINGEDILFAMSTLGFDSYVEPL 134
>sp|P63139|NFYB_MOUSE Nuclear transcription factor Y subunit beta OS=Mus musculus GN=Nfyb
PE=1 SV=1
Length = 207
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 4/83 (4%)
Query: 7 DLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRK 66
D+ LP A + R++K A+P+ GKI +KD + + S FI +T+EA +++ RK
Sbjct: 56 DIYLPIANVARIMKNAIPQ--TGKI--AKDAKECVQECVSEFISFITSEASERCHQEKRK 111
Query: 67 TLSGVDVIEGVKQIGFEVIIEIL 89
T++G D++ + +GF+ +E L
Sbjct: 112 TINGEDILFAMSTLGFDSYVEPL 134
>sp|Q6CJD7|DPB4_KLULA DNA polymerase epsilon subunit D OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=DPB4 PE=3 SV=1
Length = 216
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 4 SLDDLNLPSAIIQRLIKEALPK-----DAEGKINVSKDVRLAAGKAASLFILHLTTEALS 58
S+DDL P +II L KE+L + E +I VSKD LA ++A++F+ HL A
Sbjct: 27 SIDDLLFPKSIITSLAKESLQNAFQKGEEERRITVSKDAALAMQRSATVFVNHLLMFARM 86
Query: 59 IANEKNRKTLSGVDVIEGVKQIGFEVIIEIL 89
A + NRK+ + D++ + +G + IL
Sbjct: 87 NAKDSNRKSCNDQDIMAALDTLGLGALESIL 117
>sp|O23310|NFYB3_ARATH Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana
GN=NFYB3 PE=2 SV=1
Length = 161
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 7 DLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRK 66
D LP A + R++K+ALP +A+ +SKD + + S FI +T EA + RK
Sbjct: 23 DRFLPIANVSRIMKKALPANAK----ISKDAKETVQECVSEFISFITGEASDKCQREKRK 78
Query: 67 TLSGVDVIEGVKQIGFEVIIEIL 89
T++G D++ + +GFE +E L
Sbjct: 79 TINGDDLLWAMTTLGFEDYVEPL 101
>sp|P25207|NFYB_CHICK Nuclear transcription factor Y subunit beta OS=Gallus gallus
GN=NFYB PE=2 SV=2
Length = 205
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 4/83 (4%)
Query: 7 DLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRK 66
D+ LP A + R++K A+P+ GKI +KD + + S FI +T+EA +++ RK
Sbjct: 54 DIYLPIANVARIMKNAIPQ--TGKI--AKDAKECVQECVSEFISFITSEASERCHQEKRK 109
Query: 67 TLSGVDVIEGVKQIGFEVIIEIL 89
T++G D++ + +GF+ +E L
Sbjct: 110 TINGEDILFAMSTLGFDSYVEPL 132
>sp|Q9FGJ3|NFYB2_ARATH Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana
GN=NFYB2 PE=2 SV=1
Length = 190
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 7 DLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRK 66
D LP A + R++K+ALP +A+ +SKD + + S FI +T EA ++ RK
Sbjct: 29 DRFLPIANVSRIMKKALPANAK----ISKDAKETMQECVSEFISFVTGEASDKCQKEKRK 84
Query: 67 TLSGVDVIEGVKQIGFEVIIEIL 89
T++G D++ + +GFE +E L
Sbjct: 85 TINGDDLLWAMTTLGFEDYVEPL 107
>sp|P25210|NFYB_PETMA Nuclear transcription factor Y subunit beta OS=Petromyzon marinus
GN=NFYB PE=2 SV=1
Length = 209
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 52/87 (59%), Gaps = 5/87 (5%)
Query: 7 DLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRK 66
D+ LP A + R++K ++P + GKI +KD + + S FI +T+EA +++ RK
Sbjct: 57 DIYLPIANVARIMKTSIP--SSGKI--AKDAKECVQECVSEFISFITSEASERCHQEKRK 112
Query: 67 TLSGVDVIEGVKQIGFEVIIEILGKSY 93
T++G D++ + +GF+ +E L K Y
Sbjct: 113 TINGEDILFAMSTLGFDSYVEPL-KQY 138
>sp|Q9SLG0|NFYB1_ARATH Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana
GN=NFYB1 PE=1 SV=2
Length = 141
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 7 DLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRK 66
D LP A I R++K+ALP + GKI KD + + S FI +T+EA ++ RK
Sbjct: 23 DRYLPIANISRIMKKALPPN--GKIG--KDAKDTVQECVSEFISFITSEASDKCQKEKRK 78
Query: 67 TLSGVDVIEGVKQIGFEVIIEIL 89
T++G D++ + +GFE +E L
Sbjct: 79 TVNGDDLLWAMATLGFEDYLEPL 101
>sp|P87174|DPB4_SCHPO DNA polymerase epsilon subunit D OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dpb4 PE=1 SV=1
Length = 210
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 5 LDDLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKN 64
LDDL LP +II RL+K LP+ K V K+ A +A+LF+ LT+ + IA N
Sbjct: 12 LDDLALPRSIIMRLVKGVLPE----KSLVQKEALKAMINSATLFVSFLTSASGEIATNNN 67
Query: 65 RKTLSGVDVIEGVKQIGFEVIIEILGKSYNA 95
RK L DV+ + +I + + L K A
Sbjct: 68 RKILMPQDVLNALDEIEYPEFSKTLKKHLEA 98
>sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana
GN=NFYB8 PE=2 SV=1
Length = 173
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 7 DLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRK 66
D LP A I R++K LP A GKI +KD + + S FI +T+EA + RK
Sbjct: 32 DRFLPIANISRIMKRGLP--ANGKI--AKDAKEIVQECVSEFISFVTSEASDKCQREKRK 87
Query: 67 TLSGVDVIEGVKQIGFEVIIEIL 89
T++G D++ + +GFE +E L
Sbjct: 88 TINGDDLLWAMATLGFEDYMEPL 110
>sp|O04027|NFYB4_ARATH Nuclear transcription factor Y subunit B-4 OS=Arabidopsis
thaliana GN=NFYB4 PE=1 SV=1
Length = 139
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 6 DDLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNR 65
+D LP A + RL+K+ LP +A+ +SK+ + + A+ FI +T EA + +NR
Sbjct: 4 EDRLLPIANVGRLMKQILPSNAK----ISKEAKQTVQECATEFISFVTCEASEKCHRENR 59
Query: 66 KTLSGVDVIEGVKQIGFEVIIEILGK 91
KT++G D+ + +G + + +G+
Sbjct: 60 KTVNGDDIWWALSTLGLDNYADAVGR 85
>sp|Q5QMG3|NFYB2_ORYSJ Nuclear transcription factor Y subunit B-2 OS=Oryza sativa subsp.
japonica GN=NFYB2 PE=2 SV=1
Length = 178
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 7 DLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRK 66
D LP A I R++K+A+P A GKI +KD + + S FI +T+EA ++ RK
Sbjct: 36 DRFLPIANISRIMKKAVP--ANGKI--AKDAKETLQECVSEFISFVTSEASDKCQKEKRK 91
Query: 67 TLSGVDVIEGVKQIGFEVIIEIL 89
T++G D++ + +GFE ++ L
Sbjct: 92 TINGEDLLFAMGTLGFEEYVDPL 114
>sp|P40914|HAP3_KLULA Transcriptional activator HAP3 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=HAP3 PE=3 SV=1
Length = 205
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 7 DLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRK 66
D LP + RL+K LP VSKD + + S FI +T+EA RK
Sbjct: 24 DRWLPINNVARLMKNTLP----ATTKVSKDAKECMQECVSEFISFVTSEACDRCTSGKRK 79
Query: 67 TLSGVDVIEGVKQIGFEVIIEIL 89
T++G D++ + +GFE E+L
Sbjct: 80 TINGEDILLSLHALGFENYAEVL 102
>sp|Q9VJQ5|NC2B_DROME Protein Dr1 OS=Drosophila melanogaster GN=NC2beta PE=1 SV=1
Length = 183
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 6 DDLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNR 65
D+L LP A I ++IKE +P + V+ + R S FI +++EA + N +N+
Sbjct: 16 DELTLPRASINKIIKELVPT-----VRVANESRELILNCCSEFIHLISSEANEVCNMRNK 70
Query: 66 KTLSGVDVIEGVKQIGF 82
KT++ V+E ++++GF
Sbjct: 71 KTINAEHVLEALERLGF 87
>sp|Q65XK1|NFYB4_ORYSJ Nuclear transcription factor Y subunit B-4 OS=Oryza sativa subsp.
japonica GN=NFYB4 PE=2 SV=2
Length = 143
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 4/83 (4%)
Query: 7 DLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRK 66
D LP A I R+++ A+P++ GKI +KD + + + S FI +T+EA ++ RK
Sbjct: 24 DRFLPIANIGRIMRRAVPEN--GKI--AKDSKESVQECVSEFISFITSEASDKCLKEKRK 79
Query: 67 TLSGVDVIEGVKQIGFEVIIEIL 89
T++G D+I + +GFE +E L
Sbjct: 80 TINGDDLIWSMGTLGFEDYVEPL 102
>sp|Q9SIT9|NFYB7_ARATH Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana
GN=NFYB7 PE=2 SV=1
Length = 215
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 7 DLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRK 66
D LP A + R++K+ LP GKI SKD + + S FI +T EA + RK
Sbjct: 38 DRFLPIANVGRIMKKVLP--GNGKI--SKDAKETVQECVSEFISFVTGEASDKCQREKRK 93
Query: 67 TLSGVDVIEGVKQIGFEVIIEIL 89
T++G D+I + +GFE + L
Sbjct: 94 TINGDDIIWAITTLGFEDYVAPL 116
>sp|Q6CHS6|DPB4_YARLI DNA polymerase epsilon subunit D OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=DPB4 PE=3 SV=1
Length = 163
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 4 SLDDLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEK 63
S+DDL P + I+ L KE LP DA +SKD A +AA+LF+ ++ + + A
Sbjct: 31 SIDDLLYPKSTIKNLAKETLPDDAI----ISKDALTAIQRAATLFVSYMASHGNASAEAG 86
Query: 64 NRKTLSGVDVIEGVKQIGFEVIIEILGKSYN 94
RK ++ DV +K + + + +S N
Sbjct: 87 GRKKITPQDVFVALKDVDLAQFVPSVTQSVN 117
>sp|Q67XJ2|NFYBA_ARATH Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana
GN=NFYB10 PE=2 SV=1
Length = 176
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 7 DLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRK 66
D LP A I R++K LP + GKI +KD + + S FI +T+EA + RK
Sbjct: 31 DRFLPIANISRIMKRGLPLN--GKI--AKDAKETMQECVSEFISFVTSEASDKCQREKRK 86
Query: 67 TLSGVDVIEGVKQIGFEVIIEIL 89
T++G D++ + +GFE I+ L
Sbjct: 87 TINGDDLLWAMATLGFEDYIDPL 109
>sp|Q55DJ5|NC2B_DICDI Protein Dr1 homolog OS=Dictyostelium discoideum GN=dr1 PE=3 SV=1
Length = 178
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 6 DDLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNR 65
D+L+LP A + +LIKE LP+D + S + R + FI +++EA I + +
Sbjct: 9 DNLSLPKATVSKLIKEMLPQD----VKCSNETRDLILECCVEFIHLISSEANDICGREQK 64
Query: 66 KTLSGVDVIEGVKQIGFEVIIEILGKSYN 94
+T++ VI+ + ++GF + + Y+
Sbjct: 65 RTIAAEHVIKALTELGFSDYTQKVSDVYD 93
>sp|P13434|HAP3_YEAST Transcriptional activator HAP3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HAP3 PE=1 SV=1
Length = 144
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 7 DLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRK 66
D LP + RL+K LP A+ VSKD + + S I +T+EA RK
Sbjct: 39 DRWLPINNVARLMKNTLPPSAK----VSKDAKECMQECVSELISFVTSEASDRCAADKRK 94
Query: 67 TLSGVDVIEGVKQIGFEVIIEIL 89
T++G D++ + +GFE E+L
Sbjct: 95 TINGEDILISLHALGFENYAEVL 117
>sp|P49592|NC2B_ARATH Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1 PE=2 SV=1
Length = 159
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 53/90 (58%), Gaps = 4/90 (4%)
Query: 4 SLDDLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEK 63
S +D +LP A + ++IKE LP D + V++D + + FI +++E+ + N++
Sbjct: 10 SKEDASLPKATMTKIIKEMLPPD----VRVARDAQDLLIECCVEFINLVSSESNDVCNKE 65
Query: 64 NRKTLSGVDVIEGVKQIGFEVIIEILGKSY 93
+++T++ V++ ++ +GF IE + +Y
Sbjct: 66 DKRTIAPEHVLKALQVLGFGEYIEEVYAAY 95
>sp|O82248|NFYB5_ARATH Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana
GN=NFYB5 PE=2 SV=1
Length = 160
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 1 MAESLDDLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIA 60
M + D L LP A + R++K LP +A+ VSK+ + + S FI +T EA
Sbjct: 48 MVKEQDRL-LPIANVGRIMKNILPANAK----VSKEAKETMQECVSEFISFVTGEASDKC 102
Query: 61 NEKNRKTLSGVDVIEGVKQIGFE 83
+++ RKT++G D+ + +GF+
Sbjct: 103 HKEKRKTVNGDDICWAMANLGFD 125
>sp|Q04603|DPB4_YEAST DNA polymerase epsilon subunit D OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DPB4 PE=1 SV=1
Length = 196
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 4 SLDDLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEK 63
++ DL P + I L +E +P+ + K+ ++KD LA + A++F+ HL A IA +
Sbjct: 27 TIQDLLFPKSTIVNLARE-VPQQSGKKLLINKDASLALQRGATVFVNHLLLFAREIAKSQ 85
Query: 64 NRKTLSGVDVIEGVKQIGF 82
++K+ S DV+ + IG
Sbjct: 86 DKKSCSVDDVLSALDHIGH 104
>sp|Q6BIP4|DPB4_DEBHA DNA polymerase epsilon subunit D OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DPB4 PE=3 SV=2
Length = 247
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Query: 4 SLDDLNLPSAIIQRLIKEALPKDA-EGKINV--SKDVRLAAGKAASLFILHLTTEALSIA 60
S+D++ P A +Q+L K + + EG N+ +KD +A +++++F+ HL +A I+
Sbjct: 25 SIDEILFPRATVQKLAKNIMNASSDEGASNMILAKDSMIALQRSSTVFVSHLMFQARQIS 84
Query: 61 NEKNRKTLSGVDVIEGVKQIGFEVII 86
++ RKT++ D++ +++ F I
Sbjct: 85 KDEGRKTINAQDILSALEKAEFSGFI 110
>sp|Q84W66|NFYB6_ARATH Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana
GN=NFYB6 PE=1 SV=2
Length = 234
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 6 DDLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNR 65
D +P A + R+++ LP A+ +S D + + S +I +T EA + R
Sbjct: 59 QDRFMPIANVIRIMRRILPAHAK----ISDDSKETIQECVSEYISFITGEANERCQREQR 114
Query: 66 KTLSGVDVIEGVKQIGFEVIIEIL 89
KT++ DV+ + ++GF+ IE L
Sbjct: 115 KTITAEDVLWAMSKLGFDDYIEPL 138
>sp|Q9SFD8|NFYB9_ARATH Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana
GN=NFYB9 PE=1 SV=2
Length = 238
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 7 DLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRK 66
D +P A + R++++ LP A+ +S D + + S +I +T EA + RK
Sbjct: 61 DQYMPIANVIRIMRKTLPSHAK----ISDDAKETIQECVSEYISFVTGEANERCQREQRK 116
Query: 67 TLSGVDVIEGVKQIGFEVIIEIL 89
T++ D++ + ++GF+ ++ L
Sbjct: 117 TITAEDILWAMSKLGFDNYVDPL 139
>sp|Q92317|NCB2_YEAST Negative cofactor 2 complex subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NCB2 PE=1
SV=1
Length = 146
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 1 MAESLDDLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIA 60
MA D+++LP A +Q++I E L +D + +KD R + FI+ L++ A +A
Sbjct: 1 MAGDSDNVSLPKATVQKMISEILDQD----LMFTKDAREIIINSGIEFIMILSSMASEMA 56
Query: 61 NEKNRKTLSGVDVIEGVKQIGFEVIIEIL 89
+ + +KT++ VI+ ++++ + I L
Sbjct: 57 DNEAKKTIAPEHVIKALEELEYNEFIPFL 85
>sp|O14348|NC2B_SCHPO Negative cofactor 2 complex subunit beta OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ncb2 PE=3 SV=1
Length = 161
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 6 DDLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNR 65
D+L+LP A +Q+++ + LP D + +K+ R + FI +++EA I ++ +
Sbjct: 8 DELSLPKATVQKMVSDILPVD----LTFTKEARDLLIECCVEFIHLVSSEANEICEKEAK 63
Query: 66 KTLSGVDVIEGVKQIGF-EVIIEIL 89
KT++ +I+ ++ + F E I E L
Sbjct: 64 KTIAAEHIIKALENLEFKEYIAEAL 88
>sp|Q02516|HAP5_YEAST Transcriptional activator HAP5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HAP5 PE=1 SV=1
Length = 242
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 9/94 (9%)
Query: 2 AESLDDL---NLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALS 58
+E DD +LP A I++++K D + K+ +S + + KA +FI LT A
Sbjct: 149 SEHQDDFKSHSLPFARIRKVMK----TDEDVKM-ISAEAPIIFAKACEIFITELTMRAWC 203
Query: 59 IANEKNRKTLSGVDVIEGVKQIG-FEVIIEILGK 91
+A R+TL D+ E +++ F+ +I+++ +
Sbjct: 204 VAERNKRRTLQKADIAEALQKSDMFDFLIDVVPR 237
>sp|P79007|HAP5_SCHPO Transcriptional activator hap5 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=hap5 PE=2 SV=1
Length = 415
Score = 36.2 bits (82), Expect = 0.056, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 3 ESLDDLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANE 62
+++ L+LP A I++++K D + K+ +S + K + +FI LT A A +
Sbjct: 102 QAVKTLHLPLARIKKVMKT--DDDVKNKM-ISAEAPFLFAKGSEIFIAELTMRAWLHAKK 158
Query: 63 KNRKTLSGVDVIEGV-KQIGFEVIIEILGKSYN 94
R+TL D+ V K ++ +I+I+ K N
Sbjct: 159 NQRRTLQRSDIANAVSKSEMYDFLIDIISKDNN 191
>sp|Q6FXD0|DPB4_CANGA DNA polymerase epsilon subunit D OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=DPB4 PE=3 SV=1
Length = 191
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 36/62 (58%)
Query: 21 EALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQI 80
E + K K+ V+KD +A +A++F+ HL A +A E++R++ + D++ ++ +
Sbjct: 62 EPVEKTPAKKLVVTKDASMALQHSATVFVNHLLMYARELAKEQDRRSCNVDDILNALEHM 121
Query: 81 GF 82
G
Sbjct: 122 GH 123
>sp|P25211|NFYB_XENLA Nuclear transcription factor Y subunit beta (Fragment) OS=Xenopus
laevis GN=nfyb PE=2 SV=1
Length = 122
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 29/47 (61%)
Query: 43 KAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQIGFEVIIEIL 89
+ S FI +T+EA +++ RKT++G D++ + +GF+ +E L
Sbjct: 3 ECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPL 49
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.132 0.338
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,724,347
Number of Sequences: 539616
Number of extensions: 1074226
Number of successful extensions: 3853
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 3782
Number of HSP's gapped (non-prelim): 98
length of query: 103
length of database: 191,569,459
effective HSP length: 72
effective length of query: 31
effective length of database: 152,717,107
effective search space: 4734230317
effective search space used: 4734230317
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)