Query psy13691
Match_columns 103
No_of_seqs 122 out of 567
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 18:02:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13691.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13691hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2byk_B Chrac-14; nucleosome sl 100.0 6E-34 2.1E-38 195.9 10.3 97 1-101 1-97 (128)
2 1jfi_B DR1 protein, transcript 100.0 2.1E-32 7.1E-37 197.2 11.8 92 4-100 10-101 (179)
3 1n1j_A NF-YB; histone-like PAI 100.0 6.6E-32 2.3E-36 176.2 11.8 91 4-98 3-93 (93)
4 3b0c_W CENP-W, centromere prot 99.9 2.9E-24 9.9E-29 135.5 7.7 69 7-80 2-70 (76)
5 1f1e_A Histone fold protein; a 99.9 1.3E-22 4.4E-27 143.2 7.4 74 9-87 4-77 (154)
6 1b67_A Protein (histone HMFA); 99.9 3E-21 1E-25 118.9 8.4 66 9-80 2-67 (68)
7 3b0c_T CENP-T, centromere prot 99.8 8.1E-20 2.8E-24 122.7 7.0 88 4-97 2-89 (111)
8 2byk_A Chrac-16; nucleosome sl 99.8 3.2E-20 1.1E-24 129.2 2.7 91 5-100 15-109 (140)
9 4g92_C HAPE; transcription fac 99.8 5.3E-19 1.8E-23 119.9 7.2 75 7-86 39-113 (119)
10 1n1j_B NF-YC; histone-like PAI 99.8 1.2E-18 4.2E-23 114.2 7.4 78 5-87 15-92 (97)
11 1f1e_A Histone fold protein; a 99.8 4.4E-18 1.5E-22 120.0 9.2 70 4-79 77-146 (154)
12 2hue_C Histone H4; mini beta s 99.7 6.1E-17 2.1E-21 103.7 6.8 76 4-85 5-80 (84)
13 1ku5_A HPHA, archaeal histon; 99.7 1.8E-16 6.2E-21 98.0 8.1 64 9-78 6-69 (70)
14 1id3_B Histone H4; nucleosome 99.7 1.3E-16 4.6E-21 105.6 7.3 75 5-85 24-98 (102)
15 1tzy_D Histone H4-VI; histone- 99.6 1.1E-15 3.7E-20 101.1 7.2 75 5-85 25-99 (103)
16 2yfw_B Histone H4, H4; cell cy 99.6 1.5E-15 5E-20 100.6 7.6 75 5-85 25-99 (103)
17 1jfi_A Transcription regulator 99.6 1.2E-15 4.1E-20 100.2 6.4 77 7-88 9-85 (98)
18 2hue_B Histone H3; mini beta s 99.4 4.9E-13 1.7E-17 84.5 7.8 74 7-81 1-74 (77)
19 2yfv_A Histone H3-like centrom 99.3 6.1E-12 2.1E-16 83.0 7.0 75 4-78 22-98 (100)
20 3nqj_A Histone H3-like centrom 99.3 1.6E-11 5.4E-16 78.4 8.0 74 8-81 2-76 (82)
21 1tzy_C Histone H3; histone-fol 99.2 3.6E-11 1.2E-15 83.1 6.9 77 4-81 57-133 (136)
22 3nqu_A Histone H3-like centrom 99.2 2.9E-11 1E-15 83.9 6.4 79 4-82 56-135 (140)
23 3r45_A Histone H3-like centrom 99.2 3E-11 1E-15 85.0 6.2 78 4-81 72-150 (156)
24 1taf_B TFIID TBP associated fa 99.1 6.7E-10 2.3E-14 68.9 9.1 65 8-78 5-69 (70)
25 4dra_A Centromere protein S; D 99.0 2.3E-09 7.9E-14 72.0 7.8 64 14-80 32-95 (113)
26 3b0b_B CENP-S, centromere prot 98.9 1.3E-08 4.4E-13 67.8 8.2 79 14-97 24-102 (107)
27 3v9r_A MHF1, uncharacterized p 98.8 1.4E-08 4.7E-13 65.7 7.8 64 14-80 17-80 (90)
28 2nqb_C Histone H2A; nucleosome 98.8 1.7E-08 5.9E-13 68.5 8.2 67 7-78 21-87 (123)
29 2f8n_G Core histone macro-H2A. 98.8 1.9E-08 6.6E-13 68.0 8.2 67 7-78 20-86 (120)
30 1tzy_A Histone H2A-IV; histone 98.8 2.2E-08 7.5E-13 68.5 8.2 67 7-78 23-89 (129)
31 3vh5_A CENP-S; histone fold, c 98.8 1.9E-08 6.5E-13 69.7 7.8 64 14-80 24-87 (140)
32 1f66_C Histone H2A.Z; nucleoso 98.8 2.3E-08 7.9E-13 68.3 8.1 69 7-79 25-93 (128)
33 1id3_C Histone H2A.1; nucleoso 98.8 2.1E-08 7E-13 68.8 7.5 67 7-78 23-89 (131)
34 2ly8_A Budding yeast chaperone 98.7 2.3E-08 8E-13 67.8 6.8 57 29-85 61-117 (121)
35 2f8n_K Histone H2A type 1; nuc 98.7 3.9E-08 1.3E-12 68.8 8.0 67 7-78 42-108 (149)
36 1taf_A TFIID TBP associated fa 98.7 7.6E-08 2.6E-12 59.3 8.3 61 13-79 5-65 (68)
37 2jss_A Chimera of histone H2B. 98.6 1.5E-07 5.1E-12 67.9 7.6 68 7-78 103-170 (192)
38 4dra_E Centromere protein X; D 98.6 5.9E-07 2E-11 57.4 8.9 77 1-80 4-80 (84)
39 2nqb_D Histone H2B; nucleosome 98.5 3.6E-07 1.2E-11 62.0 7.7 67 13-84 37-103 (123)
40 2l5a_A Histone H3-like centrom 98.5 1.6E-07 5.5E-12 69.8 6.4 76 6-81 8-85 (235)
41 1tzy_B Histone H2B; histone-fo 98.5 4.7E-07 1.6E-11 61.6 7.6 67 13-84 40-106 (126)
42 2l5a_A Histone H3-like centrom 98.4 5.9E-07 2E-11 66.8 5.9 53 29-81 175-227 (235)
43 3b0b_C CENP-X, centromere prot 98.4 3.6E-06 1.2E-10 53.3 8.7 73 5-80 4-76 (81)
44 2jss_A Chimera of histone H2B. 98.2 4.9E-06 1.7E-10 59.9 8.3 63 12-79 6-68 (192)
45 1h3o_B Transcription initiatio 98.2 1.6E-05 5.3E-10 49.8 8.7 66 9-79 5-70 (76)
46 1bh9_B TAFII28; histone fold, 97.9 9.2E-05 3.1E-09 47.5 8.6 67 9-81 16-83 (89)
47 3v9r_B MHF2, uncharacterized p 97.3 0.00065 2.2E-08 43.5 5.9 50 10-62 2-51 (88)
48 2ly8_A Budding yeast chaperone 97.1 0.00043 1.5E-08 46.7 4.0 61 10-70 2-67 (121)
49 3uk6_A RUVB-like 2; hexameric 93.8 0.3 1E-05 36.0 7.8 81 10-93 259-344 (368)
50 3ksy_A SOS-1, SON of sevenless 93.7 0.29 1E-05 42.4 8.6 67 7-79 102-168 (1049)
51 2c9o_A RUVB-like 1; hexameric 89.6 1.3 4.4E-05 34.4 7.4 80 11-93 367-451 (456)
52 2v1u_A Cell division control p 89.3 2.3 7.7E-05 30.9 8.2 71 12-83 203-279 (387)
53 1fnn_A CDC6P, cell division co 87.3 3.2 0.00011 30.2 8.0 74 10-84 193-278 (389)
54 2qby_A CDC6 homolog 1, cell di 87.1 5.6 0.00019 28.7 9.1 76 10-86 197-278 (386)
55 3kw6_A 26S protease regulatory 86.9 0.76 2.6E-05 27.2 3.6 43 38-80 27-73 (78)
56 1khy_A CLPB protein; alpha hel 84.8 1.5 5.1E-05 28.4 4.6 35 32-78 5-39 (148)
57 3fh2_A Probable ATP-dependent 84.1 1.7 5.7E-05 28.5 4.6 36 32-79 6-41 (146)
58 3aji_B S6C, proteasome (prosom 81.5 1.7 5.7E-05 25.9 3.5 33 49-81 40-72 (83)
59 2dzn_B 26S protease regulatory 81.4 1.8 6.2E-05 25.8 3.7 30 52-81 40-69 (82)
60 1wwi_A Hypothetical protein TT 81.2 5.3 0.00018 27.5 6.3 58 10-73 3-60 (148)
61 2y1q_A CLPC N-domain, negative 81.0 3.7 0.00013 26.6 5.4 35 32-78 5-39 (150)
62 2y1q_A CLPC N-domain, negative 81.0 6.3 0.00021 25.4 6.5 56 11-78 56-113 (150)
63 3k1j_A LON protease, ATP-depen 80.9 11 0.00038 30.2 9.1 64 31-95 313-389 (604)
64 3fh2_A Probable ATP-dependent 80.3 9.6 0.00033 24.7 8.8 60 9-80 55-117 (146)
65 1g8p_A Magnesium-chelatase 38 80.1 6.4 0.00022 28.3 6.9 50 31-80 266-322 (350)
66 3vlf_B 26S protease regulatory 79.9 2 6.8E-05 26.1 3.5 45 39-83 26-74 (88)
67 3fes_A ATP-dependent CLP endop 79.3 5.7 0.00019 25.9 5.9 37 31-79 6-42 (145)
68 2krk_A 26S protease regulatory 78.5 2.5 8.5E-05 25.8 3.6 32 49-80 50-81 (86)
69 1k6k_A ATP-dependent CLP prote 78.1 1.9 6.4E-05 27.8 3.2 33 33-77 2-34 (143)
70 2qby_B CDC6 homolog 3, cell di 77.6 14 0.00049 26.7 8.2 71 10-83 197-273 (384)
71 2r44_A Uncharacterized protein 77.4 17 0.0006 26.1 8.7 49 31-79 225-296 (331)
72 3zri_A CLPB protein, CLPV; cha 76.0 5.5 0.00019 27.3 5.2 39 29-79 95-134 (171)
73 3fes_A ATP-dependent CLP endop 74.8 14 0.00049 23.8 8.5 59 11-81 58-118 (145)
74 1r4v_A Hypothetical protein AQ 73.9 7.4 0.00025 27.4 5.4 59 9-73 26-84 (171)
75 1k6k_A ATP-dependent CLP prote 72.8 15 0.0005 23.4 6.5 37 31-79 78-114 (143)
76 2f3n_A SH3 and multiple ankyri 68.1 4.5 0.00015 23.9 2.9 23 68-90 5-27 (76)
77 3zri_A CLPB protein, CLPV; cha 67.9 4.6 0.00016 27.7 3.3 36 32-79 24-59 (171)
78 3h4m_A Proteasome-activating n 66.0 7.4 0.00025 27.3 4.1 33 48-80 226-258 (285)
79 2chg_A Replication factor C sm 64.5 14 0.00049 23.9 5.1 63 10-78 161-224 (226)
80 3bq7_A Diacylglycerol kinase d 63.6 6.2 0.00021 23.6 2.9 24 67-90 9-32 (81)
81 1khy_A CLPB protein; alpha hel 63.5 20 0.00069 22.8 5.7 36 31-78 81-116 (148)
82 1uxc_A FRUR (1-57), fructose r 60.3 13 0.00045 21.3 3.9 36 8-48 10-45 (65)
83 1njg_A DNA polymerase III subu 60.0 21 0.00071 23.3 5.3 63 10-77 185-248 (250)
84 2kru_A Light-independent proto 59.6 7 0.00024 23.1 2.5 50 31-81 4-54 (63)
85 2gle_A Neurabin-1; SAM domain, 58.9 5.8 0.0002 23.1 2.1 22 68-89 7-28 (74)
86 1lv7_A FTSH; alpha/beta domain 58.3 13 0.00045 25.7 4.3 33 49-81 221-253 (257)
87 4b4t_I 26S protease regulatory 57.2 11 0.00039 29.8 4.1 32 48-79 391-422 (437)
88 4b4t_L 26S protease subunit RP 57.1 12 0.0004 29.5 4.1 31 49-79 391-421 (437)
89 2l09_A ASR4154 protein; proto- 55.6 8.1 0.00028 22.7 2.3 50 31-81 3-53 (62)
90 3pxg_A Negative regulator of g 55.1 36 0.0012 26.3 6.6 60 9-80 54-115 (468)
91 1in4_A RUVB, holliday junction 55.1 45 0.0015 24.3 6.9 53 31-83 198-253 (334)
92 3bos_A Putative DNA replicatio 54.9 31 0.0011 22.8 5.6 46 31-78 192-241 (242)
93 4b4t_J 26S protease regulatory 54.7 14 0.00048 28.9 4.2 32 48-79 357-388 (405)
94 3pxg_A Negative regulator of g 54.5 29 0.001 26.8 6.1 37 32-80 5-41 (468)
95 4b4t_M 26S protease regulatory 52.6 12 0.0004 29.5 3.4 33 48-80 390-422 (434)
96 4b4t_H 26S protease regulatory 52.4 12 0.00041 29.9 3.6 32 49-80 419-450 (467)
97 3pxi_A Negative regulator of g 50.2 49 0.0017 27.0 7.0 60 9-80 54-115 (758)
98 1w5s_A Origin recognition comp 50.0 70 0.0024 23.1 8.3 67 10-81 215-294 (412)
99 3pvs_A Replication-associated 49.4 61 0.0021 25.1 7.1 72 9-81 164-245 (447)
100 1kw4_A Polyhomeotic; SAM domai 48.5 14 0.00048 22.6 2.7 24 67-90 16-40 (89)
101 3li6_A Calcium-binding protein 46.4 31 0.0011 18.0 4.0 22 58-79 43-64 (66)
102 4b4t_K 26S protease regulatory 46.2 23 0.0008 27.6 4.3 31 49-79 383-413 (428)
103 1ixz_A ATP-dependent metallopr 46.1 21 0.00072 24.6 3.7 29 50-78 226-254 (254)
104 1tiz_A Calmodulin-related prot 44.6 33 0.0011 17.8 4.1 25 59-83 9-33 (67)
105 3pxi_A Negative regulator of g 43.5 51 0.0017 26.9 6.1 37 32-80 5-41 (758)
106 1iy2_A ATP-dependent metallopr 42.9 25 0.00086 24.7 3.7 28 51-78 251-278 (278)
107 2d8c_A Phosphatidylcholine:cer 42.2 7.5 0.00025 24.5 0.7 23 67-89 19-41 (97)
108 2qz4_A Paraplegin; AAA+, SPG7, 42.2 9.8 0.00034 26.1 1.4 33 48-80 217-249 (262)
109 5pal_A Parvalbumin; calcium-bi 41.3 32 0.0011 20.1 3.6 80 9-95 5-88 (109)
110 1ygt_A Cytoplasmic dynein ligh 41.3 8.2 0.00028 24.5 0.8 25 1-25 1-25 (111)
111 1qvr_A CLPB protein; coiled co 41.1 26 0.00089 29.2 4.0 35 32-78 5-39 (854)
112 1v85_A Similar to ring finger 40.2 22 0.00075 21.6 2.7 23 67-89 19-43 (91)
113 1jr3_A DNA polymerase III subu 40.2 62 0.0021 23.1 5.6 68 9-81 177-245 (373)
114 2joj_A Centrin protein; N-term 39.3 43 0.0015 18.0 3.7 20 63-82 19-38 (77)
115 1hqc_A RUVB; extended AAA-ATPa 39.3 55 0.0019 23.0 5.1 70 10-82 168-240 (324)
116 3pm8_A PFCDPK2, calcium-depend 38.8 81 0.0028 20.7 5.7 69 8-83 20-89 (197)
117 2kz2_A Calmodulin, CAM; TR2C, 38.0 57 0.002 18.9 4.3 28 56-83 34-61 (94)
118 3f8t_A Predicted ATPase involv 37.3 1.6E+02 0.0054 23.8 7.9 68 9-80 393-483 (506)
119 1r6b_X CLPA protein; AAA+, N-t 37.2 30 0.001 28.2 3.7 33 33-77 2-34 (758)
120 1r6b_X CLPA protein; AAA+, N-t 36.9 75 0.0026 25.8 6.1 37 31-79 78-114 (758)
121 1lng_A SRP19, signal recogniti 36.9 18 0.00061 22.4 1.8 27 60-86 13-47 (87)
122 2ns0_A Hypothetical protein; r 36.0 77 0.0026 19.6 5.1 34 62-95 19-52 (85)
123 3fs7_A Parvalbumin, thymic; ca 35.0 67 0.0023 18.6 5.3 79 9-94 6-88 (109)
124 1sxj_D Activator 1 41 kDa subu 35.0 39 0.0013 24.0 3.7 68 9-81 191-264 (353)
125 4a4j_A Pacszia, cation-transpo 34.4 21 0.00072 19.1 1.8 18 66-83 48-65 (69)
126 2e8o_A SAM domain and HD domai 34.3 19 0.00067 22.4 1.8 22 68-89 30-53 (103)
127 3omb_A Extracellular solute-bi 34.2 31 0.0011 26.5 3.3 63 33-97 471-534 (535)
128 3ezq_B Protein FADD; apoptosis 34.1 92 0.0031 20.0 5.1 35 60-95 57-91 (122)
129 3bs7_A Protein aveugle; sterIl 34.1 27 0.00093 20.2 2.3 23 68-90 6-30 (78)
130 1ixs_A Holliday junction DNA h 33.5 19 0.00064 20.7 1.5 14 71-84 18-31 (62)
131 2l8n_A Transcriptional repress 33.4 38 0.0013 19.4 2.8 32 9-48 20-51 (67)
132 2lv7_A Calcium-binding protein 33.4 27 0.00093 21.1 2.3 41 31-83 28-68 (100)
133 3pfi_A Holliday junction ATP-d 33.0 47 0.0016 23.7 3.9 69 12-83 186-257 (338)
134 1ofh_A ATP-dependent HSL prote 33.0 88 0.003 21.6 5.3 51 31-81 233-300 (310)
135 2ktg_A Calmodulin, putative; e 32.8 48 0.0016 18.3 3.2 26 58-83 21-46 (85)
136 1avs_A Troponin C; muscle cont 32.7 68 0.0023 18.0 4.0 27 57-83 26-52 (90)
137 2chq_A Replication factor C sm 32.4 1.2E+02 0.0042 20.9 6.0 66 9-80 160-226 (319)
138 3mse_B Calcium-dependent prote 32.4 98 0.0033 19.7 9.3 60 32-94 18-80 (180)
139 1pva_A Parvalbumin; calcium bi 32.0 76 0.0026 18.3 5.0 41 55-95 46-89 (110)
140 1ich_A TNF-1, tumor necrosis f 31.7 57 0.0019 21.1 3.7 36 59-94 64-99 (112)
141 1z4h_A TORI, TOR inhibition pr 30.8 28 0.00095 19.6 1.9 19 8-26 20-39 (66)
142 2pmy_A RAS and EF-hand domain- 30.7 78 0.0027 18.0 4.5 28 56-83 32-59 (91)
143 2lmt_A Calmodulin-related prot 30.6 97 0.0033 19.1 5.4 42 54-95 86-127 (148)
144 1j7q_A CAVP, calcium vector pr 30.2 50 0.0017 18.3 3.0 23 61-83 24-46 (86)
145 1kvn_A SRP19; RNA binding prot 30.1 24 0.00083 22.5 1.7 26 61-86 17-50 (104)
146 1s6j_A CDPK, calcium-dependent 29.7 56 0.0019 18.1 3.2 40 56-95 28-67 (87)
147 1whz_A Hypothetical protein; a 29.5 26 0.0009 20.0 1.7 17 67-83 4-20 (70)
148 2opo_A Polcalcin CHE A 3; calc 29.3 69 0.0024 17.7 3.6 13 68-80 28-40 (86)
149 3iwl_A Copper transport protei 29.1 27 0.00092 19.0 1.6 17 67-83 45-61 (68)
150 2kn2_A Calmodulin; S MAPK phos 28.5 82 0.0028 17.6 4.0 11 67-77 61-71 (92)
151 3dxs_X Copper-transporting ATP 28.4 26 0.00088 19.1 1.4 18 66-83 49-66 (74)
152 1jid_A Signal recognition part 27.9 29 0.001 23.0 1.8 27 60-86 28-62 (128)
153 1rwy_A Parvalbumin alpha; EF-h 27.9 91 0.0031 17.9 4.4 65 9-80 5-70 (109)
154 3eus_A DNA-binding protein; st 27.6 91 0.0031 17.8 4.3 34 61-94 47-80 (86)
155 2ovk_C Myosin catalytic light 27.3 1.1E+02 0.0038 18.7 4.6 29 55-83 89-117 (159)
156 2r62_A Cell division protease 27.2 28 0.00097 24.0 1.8 30 52-81 225-254 (268)
157 3dlu_A SRP19, signal recogniti 27.0 32 0.0011 22.0 1.9 25 60-84 16-48 (106)
158 2q2e_B Type 2 DNA topoisomeras 27.0 24 0.00081 29.1 1.5 47 32-78 443-491 (621)
159 2zbk_B Type 2 DNA topoisomeras 26.8 19 0.00064 29.0 0.8 49 31-79 434-484 (530)
160 3vfd_A Spastin; ATPase, microt 26.6 1.9E+02 0.0065 21.2 8.1 68 12-82 284-367 (389)
161 2pvb_A Protein (parvalbumin); 26.5 97 0.0033 17.8 5.5 80 10-95 6-88 (108)
162 3bs5_B Connector enhancer of k 26.4 49 0.0017 19.2 2.5 23 68-90 7-31 (80)
163 1pk1_B Sex COMB on midleg CG94 26.3 43 0.0015 20.5 2.3 24 67-90 16-41 (89)
164 3nbx_X ATPase RAVA; AAA+ ATPas 26.1 2.4E+02 0.0082 22.2 8.6 46 31-76 224-282 (500)
165 3b9p_A CG5977-PA, isoform A; A 26.0 1.3E+02 0.0044 20.9 5.1 52 32-83 208-275 (297)
166 2lbf_B 60S acidic ribosomal pr 25.8 52 0.0018 19.4 2.6 28 56-83 7-34 (70)
167 3bs5_A Protein aveugle; sterIl 25.4 45 0.0015 20.9 2.3 23 67-89 25-49 (106)
168 2fi0_A Conserved domain protei 25.4 32 0.0011 20.5 1.5 20 64-83 57-76 (81)
169 1k9u_A Polcalcin PHL P 7; poll 25.0 75 0.0026 17.1 3.1 17 63-79 50-66 (78)
170 2xns_C RGS14, regulator of G-p 25.0 19 0.00065 19.2 0.4 32 47-79 4-35 (40)
171 2eam_A Putative 47 kDa protein 24.7 47 0.0016 19.5 2.2 25 67-91 9-33 (80)
172 3i5g_C Myosin catalytic light 24.5 1.4E+02 0.0048 19.0 4.8 29 55-83 89-117 (159)
173 2mys_C Myosin; muscle protein, 24.4 1.2E+02 0.004 18.0 4.4 10 66-75 61-70 (149)
174 1sxj_B Activator 1 37 kDa subu 23.9 1.2E+02 0.0042 20.9 4.7 66 10-81 166-232 (323)
175 2p2u_A HOST-nuclease inhibitor 23.8 23 0.00079 24.3 0.7 19 69-87 108-126 (171)
176 2mys_B Myosin; muscle protein, 23.7 1.3E+02 0.0046 18.4 4.5 21 62-82 36-56 (166)
177 2ovk_B RLC, myosin regulatory 23.7 1.3E+02 0.0044 18.2 4.8 25 60-84 25-49 (153)
178 1alv_A Calpain, S-camld; calci 23.4 1.4E+02 0.0049 18.6 5.7 67 8-83 42-109 (173)
179 2xmm_A SSR2857 protein, ATX1; 23.3 41 0.0014 17.0 1.6 16 68-83 47-62 (64)
180 3vlv_A ALGQ1; sugar binding pr 23.3 57 0.002 24.8 3.0 67 31-99 424-492 (502)
181 3a09_A ALGQ1; sugar binding pr 23.2 65 0.0022 23.8 3.2 27 70-96 463-489 (490)
182 1u5t_A Appears to BE functiona 23.2 1.1E+02 0.0036 22.2 4.2 37 45-81 88-142 (233)
183 1zav_U 50S ribosomal protein L 23.1 80 0.0027 15.6 2.8 25 68-92 1-25 (30)
184 2kg5_A ARF-GAP, RHO-GAP domain 23.1 60 0.002 20.2 2.6 23 69-91 25-47 (100)
185 1dlw_A Hemoglobin; oxygen stor 23.0 60 0.002 19.9 2.6 35 67-101 72-114 (116)
186 1jr3_D DNA polymerase III, del 22.7 76 0.0026 22.8 3.5 48 31-78 160-207 (343)
187 1o7b_T Tumor necrosis factor-i 22.7 67 0.0023 20.1 2.8 29 54-83 17-45 (98)
188 1bh9_A TAFII18; histone fold, 22.4 1E+02 0.0035 16.5 5.9 39 15-58 6-44 (45)
189 2qac_A Myosin A tail domain in 22.3 1.2E+02 0.004 18.2 3.9 22 62-83 25-47 (146)
190 2qkq_A Ephrin type-B receptor 22.1 64 0.0022 19.0 2.5 22 70-91 15-36 (83)
191 3j04_B Myosin regulatory light 21.8 1E+02 0.0036 18.3 3.6 38 57-94 82-119 (143)
192 1b4f_A EPHB2; SAM domain, EPH 21.7 66 0.0023 18.8 2.5 22 70-91 11-32 (82)
193 2jrf_A Tubulin polymerization- 21.7 1.3E+02 0.0046 21.0 4.4 54 8-80 28-82 (184)
194 3f9v_A Minichromosome maintena 21.7 78 0.0027 25.4 3.6 49 32-80 521-587 (595)
195 3hil_A Ephrin type-A receptor 21.5 67 0.0023 19.2 2.5 24 68-91 21-44 (82)
196 1u5t_B Defective in vacuolar p 21.2 1.2E+02 0.004 20.6 4.0 14 67-80 59-72 (169)
197 3u0k_A Rcamp; fluorescent prot 21.1 2E+02 0.007 22.7 5.8 51 31-93 294-344 (440)
198 1wlz_A DJBP, CAP-binding prote 21.0 1.3E+02 0.0044 17.2 5.1 29 55-83 28-56 (105)
199 1uhk_A Aequorin 2, aequorin; E 21.0 1.6E+02 0.0055 18.3 4.5 29 55-83 113-141 (191)
200 2heo_A Z-DNA binding protein 1 20.9 44 0.0015 18.9 1.5 19 7-25 34-52 (67)
201 1jfj_A Ehcabp, calcium-binding 20.8 1.3E+02 0.0045 17.3 4.0 22 57-78 42-63 (134)
202 2znd_A Programmed cell death p 20.8 1.6E+02 0.0055 18.2 5.4 66 9-83 40-106 (172)
203 1ucv_A Ephrin type-A receptor 20.7 71 0.0024 18.8 2.5 22 70-91 7-28 (81)
204 1rro_A RAT oncomodulin; calciu 20.7 1.3E+02 0.0045 17.2 3.8 67 9-81 5-71 (108)
205 3i5g_B Myosin regulatory light 20.5 1.7E+02 0.0058 18.4 5.6 49 31-91 8-56 (153)
206 2kso_A Ephrin type-A receptor 20.4 67 0.0023 19.1 2.3 23 69-91 15-37 (82)
207 1y1x_A Leishmania major homolo 20.4 1.8E+02 0.0061 18.6 5.6 30 54-83 96-125 (191)
208 2roe_A Heavy metal binding pro 20.2 45 0.0015 17.4 1.4 16 68-83 46-61 (66)
209 2bl0_C Myosin regulatory light 20.2 1.2E+02 0.0039 18.0 3.5 16 63-78 54-69 (142)
210 2lnz_A Ubiquitin-like protein 20.1 1.4E+02 0.0049 17.4 3.7 22 5-26 24-45 (64)
211 2dkz_A Hypothetical protein LO 20.0 87 0.003 19.4 2.8 22 65-86 15-36 (84)
212 3e3r_A Calcyphosin, calcyphosi 20.0 1.5E+02 0.0051 18.8 4.2 25 59-83 45-69 (204)
No 1
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=100.00 E-value=6e-34 Score=195.94 Aligned_cols=97 Identities=36% Similarity=0.617 Sum_probs=85.0
Q ss_pred CCCCccCCCCcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhc
Q psy13691 1 MAESLDDLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQI 80 (103)
Q Consensus 1 m~~~~~d~~LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~l 80 (103)
||++++|+.||+|+|.||||+++|+. .+||+||+.+|++||++||+|||++|+++|.+++||||+++||++||+.+
T Consensus 1 m~e~~~d~~LP~A~I~rImK~~~pd~----~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l 76 (128)
T 2byk_B 1 MVERIEDLNLPNAVIGRLIKEALPES----ASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTEL 76 (128)
T ss_dssp ----------CCSHHHHHHHHHSCTT----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHT
T ss_pred CCCccccccCCHHHHHHHHHHhCccc----ceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHc
Confidence 99999999999999999999999988 99999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHhccc
Q psy13691 81 GFEVIIEILGKSYNAAVSIKV 101 (103)
Q Consensus 81 gf~~~~~~l~~~l~~~k~~~~ 101 (103)
||.+|+++|+.+|+.||+.+.
T Consensus 77 ~f~~fl~~lk~~l~~yr~~~~ 97 (128)
T 2byk_B 77 DFESFVPSLTQDLEVYRKVVK 97 (128)
T ss_dssp TCTTTHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998764
No 2
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.98 E-value=2.1e-32 Score=197.21 Aligned_cols=92 Identities=30% Similarity=0.506 Sum_probs=88.2
Q ss_pred CccCCCCcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcCch
Q psy13691 4 SLDDLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQIGFE 83 (103)
Q Consensus 4 ~~~d~~LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~ 83 (103)
..+|+.||+|+|.||||++|| + ++||+||+++|++||++||+|||++|+++|.++|||||+++||++||+.|||+
T Consensus 10 ~~eD~~LP~A~V~RImK~alp-~----~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~ 84 (179)
T 1jfi_B 10 NDDDLTIPRAAINKMIKETLP-N----VRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFG 84 (179)
T ss_dssp --CCCCCCHHHHHHHHHHHST-T----CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTG
T ss_pred chhhhhcCHHHHHHHHHHhCC-c----cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChH
Confidence 568999999999999999999 7 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q psy13691 84 VIIEILGKSYNAAVSIK 100 (103)
Q Consensus 84 ~~~~~l~~~l~~~k~~~ 100 (103)
+|+++|+.+|+.||+.+
T Consensus 85 ~fv~~lk~~L~~yre~~ 101 (179)
T 1jfi_B 85 SYISEVKEVLQECKTVA 101 (179)
T ss_dssp GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999865
No 3
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.98 E-value=6.6e-32 Score=176.19 Aligned_cols=91 Identities=27% Similarity=0.444 Sum_probs=85.7
Q ss_pred CccCCCCcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcCch
Q psy13691 4 SLDDLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQIGFE 83 (103)
Q Consensus 4 ~~~d~~LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~ 83 (103)
+++|+.||+++|.||||+.+|++ .+||+||+.++++||++||.||+++|++.|.++|||||+++||..|++.+||+
T Consensus 3 ~~~d~~LP~a~i~ri~K~~~~~~----~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F~ 78 (93)
T 1n1j_A 3 REQDIYLPIANVARIMKNAIPQT----GKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFD 78 (93)
T ss_dssp ----CCCCHHHHHHHHHHTSCTT----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTCG
T ss_pred CcccccCChhHHHHHHHHhCCcc----ceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcH
Confidence 57899999999999999999988 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy13691 84 VIIEILGKSYNAAVS 98 (103)
Q Consensus 84 ~~~~~l~~~l~~~k~ 98 (103)
+|+++++.++++||+
T Consensus 79 ~~i~~~~~~l~~~r~ 93 (93)
T 1n1j_A 79 SYVEPLKLYLQKFRE 93 (93)
T ss_dssp GGHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHhC
Confidence 999999999999985
No 4
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.91 E-value=2.9e-24 Score=135.55 Aligned_cols=69 Identities=23% Similarity=0.342 Sum_probs=64.3
Q ss_pred CCCCcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhc
Q psy13691 7 DLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQI 80 (103)
Q Consensus 7 d~~LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~l 80 (103)
...||+|+|.||||+++| + ++||+||+++|++|+++||++|+++|++.|.++|||||+++||..|++.+
T Consensus 2 ~~~LP~A~V~rI~K~~~p-~----~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~l 70 (76)
T 3b0c_W 2 RRTVPRGTLRKIIKKHKP-H----LRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVI 70 (76)
T ss_dssp --CCCHHHHHHHHHHHCT-T----CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHhCC-C----CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 358999999999999999 4 79999999999999999999999999999999999999999999999754
No 5
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.87 E-value=1.3e-22 Score=143.24 Aligned_cols=74 Identities=18% Similarity=0.216 Sum_probs=71.2
Q ss_pred CCcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcCchHHHH
Q psy13691 9 NLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQIGFEVIIE 87 (103)
Q Consensus 9 ~LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~~~~~ 87 (103)
+||+++|.||||++||. .+||+||++.+++|+++|+.+++++|++.|.++|||||+++||++||..|||++|.+
T Consensus 4 ~LP~a~V~Riik~~lg~-----~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~~v~d 77 (154)
T 1f1e_A 4 ELPKAAIERIFRQGIGE-----RRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVED 77 (154)
T ss_dssp CCCHHHHHHHHHTTSTT-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTTSTT
T ss_pred cCCccHHHHHHHhcCCc-----cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccccCCc
Confidence 89999999999999986 699999999999999999999999999999999999999999999999999998753
No 6
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.85 E-value=3e-21 Score=118.88 Aligned_cols=66 Identities=33% Similarity=0.391 Sum_probs=63.2
Q ss_pred CCcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhc
Q psy13691 9 NLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQI 80 (103)
Q Consensus 9 ~LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~l 80 (103)
.||+++|.||||+. ++ .+||+||..++++|+++|+.+|+.+|+..|.++|||||+++||..|++.|
T Consensus 2 ~lP~a~v~Ri~k~~--~~----~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 2 ELPIAPIGRIIKNA--GA----ERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp CSCHHHHHHHHHHT--TC----SEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred CCCccHHHHHHhcC--Cc----ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 69999999999998 34 79999999999999999999999999999999999999999999999876
No 7
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.80 E-value=8.1e-20 Score=122.73 Aligned_cols=88 Identities=15% Similarity=0.176 Sum_probs=76.9
Q ss_pred CccCCCCcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcCch
Q psy13691 4 SLDDLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQIGFE 83 (103)
Q Consensus 4 ~~~d~~LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~ 83 (103)
..+|..||++.|.||+|.. .. .+||+|+.+++.+|+.+|+..++.+|...|+++|||||+++||..|++..|+.
T Consensus 2 ~~~d~~lP~a~I~Ri~r~~--g~----~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~ 75 (111)
T 3b0c_T 2 STREPEIASSLIKQIFSHY--VK----TPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLV 75 (111)
T ss_dssp --------CHHHHHHHHHH--HC----SCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSS
T ss_pred CCCCCCCCHHHHHHHHHHC--CC----CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCc
Confidence 4578899999999999998 23 79999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy13691 84 VIIEILGKSYNAAV 97 (103)
Q Consensus 84 ~~~~~l~~~l~~~k 97 (103)
.|..++..++++|.
T Consensus 76 ~~~~~l~~l~~~~l 89 (111)
T 3b0c_T 76 TDKMPLHVLVERHL 89 (111)
T ss_dssp BTTBCHHHHHHHHS
T ss_pred cccccHHHHHHHhC
Confidence 99999999999993
No 8
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.78 E-value=3.2e-20 Score=129.17 Aligned_cols=91 Identities=15% Similarity=0.184 Sum_probs=61.6
Q ss_pred ccCCCCcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCCcChhhHHHhhhh---c
Q psy13691 5 LDDLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIA-NEKNRKTLSGVDVIEGVKQ---I 80 (103)
Q Consensus 5 ~~d~~LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a-~~~~RkTI~~eDV~~Al~~---l 80 (103)
..+..||.++|.||||.. |+. .+||++|..++++|++.||.+|+.+|+..| ...+||||+++||..|+.. +
T Consensus 15 ~~~~~LPlaRIKrIMK~d-pdv----~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~ 89 (140)
T 2byk_A 15 TAETFLPLSRVRTIMKSS-MDT----GLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNL 89 (140)
T ss_dssp --------------CCSS-SSC----SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTT
T ss_pred ccCCCCCHHHHHHHHhcC-ccc----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchh
Confidence 356789999999999998 666 699999999999999999999999999999 9999999999999999985 5
Q ss_pred CchHHHHHHHHHHHHHHhcc
Q psy13691 81 GFEVIIEILGKSYNAAVSIK 100 (103)
Q Consensus 81 gf~~~~~~l~~~l~~~k~~~ 100 (103)
+|..++.|.+..+++|++..
T Consensus 90 dFL~divP~ki~l~~~~~~~ 109 (140)
T 2byk_A 90 EFLLQIVPQKIRVHQFQEML 109 (140)
T ss_dssp GGGTTTSCSCC---------
T ss_pred hhHhccccchhhHHHHHHHH
Confidence 55555568899999998765
No 9
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.77 E-value=5.3e-19 Score=119.88 Aligned_cols=75 Identities=24% Similarity=0.340 Sum_probs=68.8
Q ss_pred CCCCcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcCchHHH
Q psy13691 7 DLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQIGFEVII 86 (103)
Q Consensus 7 d~~LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~~~~ 86 (103)
...||.|+|.||||.. |+. .+||+||..++++|++.||.+|+.+|+..|..++||||+++||..|++..+..+|+
T Consensus 39 ~~~lPvaRIkrImK~d-~~~----~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL 113 (119)
T 4g92_C 39 IHQLPLARIKKVMKAD-PEV----KMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFL 113 (119)
T ss_dssp CCSSCHHHHHHHHHTS-TTC----CEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGG
T ss_pred cCCCCHHHHHHHHhhC-Ccc----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhHH
Confidence 5679999999999976 666 79999999999999999999999999999999999999999999999877665564
No 10
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.76 E-value=1.2e-18 Score=114.21 Aligned_cols=78 Identities=23% Similarity=0.274 Sum_probs=68.7
Q ss_pred ccCCCCcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcCchH
Q psy13691 5 LDDLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQIGFEV 84 (103)
Q Consensus 5 ~~d~~LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~~ 84 (103)
..+..||.|+|.||||.. |+. .+||+||..++++|++.|+.+|+.+|++.|.++|||||+++||..|++..++.+
T Consensus 15 ~~~~~lP~arIkrImK~~-~~~----~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~ 89 (97)
T 1n1j_B 15 FRVQELPLARIKKIMKLD-EDV----KMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFD 89 (97)
T ss_dssp -----CCHHHHHHHHTTS-TTC----CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGG
T ss_pred cCCCcCCHHHHHHHHccC-ccc----cccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHH
Confidence 346789999999999998 554 589999999999999999999999999999999999999999999999988888
Q ss_pred HHH
Q psy13691 85 IIE 87 (103)
Q Consensus 85 ~~~ 87 (103)
|+.
T Consensus 90 FL~ 92 (97)
T 1n1j_B 90 FLI 92 (97)
T ss_dssp GGT
T ss_pred HHH
Confidence 764
No 11
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.75 E-value=4.4e-18 Score=120.03 Aligned_cols=70 Identities=26% Similarity=0.224 Sum_probs=66.0
Q ss_pred CccCCCCcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhh
Q psy13691 4 SLDDLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQ 79 (103)
Q Consensus 4 ~~~d~~LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~ 79 (103)
..+++.||+++|.||||+. .. .|||+||++.+++|+++|+.+++++|.+.|.++|||||+++||.+|++.
T Consensus 77 d~~~l~lP~a~V~Ri~k~~--g~----~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~ 146 (154)
T 1f1e_A 77 DYDGELFGRATVRRILKRA--GI----ERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITY 146 (154)
T ss_dssp TCCSCCCCHHHHHHHHHHT--TC----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred ccccccCCccHHHHHHHHc--CC----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 4678899999999999998 33 7999999999999999999999999999999999999999999999985
No 12
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.68 E-value=6.1e-17 Score=103.68 Aligned_cols=76 Identities=17% Similarity=0.245 Sum_probs=69.5
Q ss_pred CccCCCCcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcCch
Q psy13691 4 SLDDLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQIGFE 83 (103)
Q Consensus 4 ~~~d~~LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~ 83 (103)
+.....||+++|.||++.... .+||+|+.+.++++.++|+..++.+|...|+++|||||+++||..||+.+|++
T Consensus 5 r~~~~~ip~~~I~Riar~~Gv------~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~~ 78 (84)
T 2hue_C 5 RDNIQGITKPAIRRLARRGGV------KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 78 (84)
T ss_dssp GGGCCSSCHHHHHHHHHHTTC------CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCEE
T ss_pred cccCCCCCHHHHHHHHHHcCc------hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCC
Confidence 344567999999999999743 58999999999999999999999999999999999999999999999999987
Q ss_pred HH
Q psy13691 84 VI 85 (103)
Q Consensus 84 ~~ 85 (103)
-|
T Consensus 79 lY 80 (84)
T 2hue_C 79 LY 80 (84)
T ss_dssp EE
T ss_pred CC
Confidence 55
No 13
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.68 E-value=1.8e-16 Score=98.04 Aligned_cols=64 Identities=25% Similarity=0.350 Sum_probs=60.8
Q ss_pred CCcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhh
Q psy13691 9 NLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVK 78 (103)
Q Consensus 9 ~LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~ 78 (103)
.||+++|.||+|+. .. .++|+++..+++++++.|+..|+..|+..|.++|||||+++||..|++
T Consensus 6 ~lp~a~v~Rl~r~~--g~----~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA--GA----ERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp CSCHHHHHHHHHHT--TC----SEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred cCChHHHHHHHHHc--Cc----ceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 79999999999996 23 699999999999999999999999999999999999999999999986
No 14
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.67 E-value=1.3e-16 Score=105.58 Aligned_cols=75 Identities=16% Similarity=0.221 Sum_probs=69.0
Q ss_pred ccCCCCcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcCchH
Q psy13691 5 LDDLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQIGFEV 84 (103)
Q Consensus 5 ~~d~~LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~~ 84 (103)
.....||+++|.||++.... .+||+|+.+.++++.++|+..++.+|...|++++||||+++||..||+.+|++-
T Consensus 24 ~~i~~ip~~~I~Rlar~~Gv------~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g~~l 97 (102)
T 1id3_B 24 DNIQGITKPAIRRLARRGGV------KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTL 97 (102)
T ss_dssp CCGGGSCHHHHHHHHHHTTC------CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCCE
T ss_pred hccCCCCHHHHHHHHHHcCc------hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCC
Confidence 34557999999999999743 589999999999999999999999999999999999999999999999999875
Q ss_pred H
Q psy13691 85 I 85 (103)
Q Consensus 85 ~ 85 (103)
|
T Consensus 98 Y 98 (102)
T 1id3_B 98 Y 98 (102)
T ss_dssp E
T ss_pred C
Confidence 5
No 15
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.62 E-value=1.1e-15 Score=101.13 Aligned_cols=75 Identities=17% Similarity=0.249 Sum_probs=68.8
Q ss_pred ccCCCCcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcCchH
Q psy13691 5 LDDLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQIGFEV 84 (103)
Q Consensus 5 ~~d~~LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~~ 84 (103)
...-.||+++|.||++.... .+||.|+.+.+.++.+.|+..|+.+|...|++++||||+++||..||+.+|++.
T Consensus 25 ~~~~gip~~~I~Rlar~~G~------~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g~~l 98 (103)
T 1tzy_D 25 DNIQGITKPAIRRLARRGGV------KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTL 98 (103)
T ss_dssp CGGGGSCHHHHHHHHHHTTC------CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCEE
T ss_pred hhcccCCHHHHHHHHHHcCc------cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcCCCC
Confidence 34556999999999999844 489999999999999999999999999999999999999999999999999865
Q ss_pred H
Q psy13691 85 I 85 (103)
Q Consensus 85 ~ 85 (103)
|
T Consensus 99 Y 99 (103)
T 1tzy_D 99 Y 99 (103)
T ss_dssp E
T ss_pred c
Confidence 4
No 16
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.61 E-value=1.5e-15 Score=100.56 Aligned_cols=75 Identities=17% Similarity=0.236 Sum_probs=63.6
Q ss_pred ccCCCCcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcCchH
Q psy13691 5 LDDLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQIGFEV 84 (103)
Q Consensus 5 ~~d~~LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~~ 84 (103)
...-.||+++|.||++.... .+||.|+.+.+.++.+.|+..|+.+|...|++++||||+++||..||+.+|++.
T Consensus 25 ~~~~gip~~~I~Rlar~~G~------~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~~l 98 (103)
T 2yfw_B 25 DNIQGITKPAIRRLARRGGV------KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTL 98 (103)
T ss_dssp -----CCHHHHHHHHHHTTC------CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC---
T ss_pred hhhccCCHHHHHHHHHHcCc------cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCC
Confidence 33456999999999999744 489999999999999999999999999999999999999999999999999875
Q ss_pred H
Q psy13691 85 I 85 (103)
Q Consensus 85 ~ 85 (103)
|
T Consensus 99 Y 99 (103)
T 2yfw_B 99 Y 99 (103)
T ss_dssp -
T ss_pred c
Confidence 5
No 17
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.60 E-value=1.2e-15 Score=100.19 Aligned_cols=77 Identities=18% Similarity=0.273 Sum_probs=59.4
Q ss_pred CCCCcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcCchHHH
Q psy13691 7 DLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQIGFEVII 86 (103)
Q Consensus 7 d~~LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~~~~ 86 (103)
...||.++|.||||.. |+. .+||.||..++.++++.|+.+|+..|+..|.+.|||||+++||..|++.-+..+|+
T Consensus 9 ~~~fPvaRIkrimK~~-~~~----~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL 83 (98)
T 1jfi_A 9 NARFPPARIKKIMQTD-EEI----GKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAAN 83 (98)
T ss_dssp -CCCCHHHHHHHHTTS-TTC----CCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC--------
T ss_pred CCCCChHHHHHHHHcC-ccc----cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHH
Confidence 5789999999999985 444 59999999999999999999999999999999999999999999999876666665
Q ss_pred HH
Q psy13691 87 EI 88 (103)
Q Consensus 87 ~~ 88 (103)
..
T Consensus 84 ~d 85 (98)
T 1jfi_A 84 KA 85 (98)
T ss_dssp --
T ss_pred Hh
Confidence 43
No 18
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=99.43 E-value=4.9e-13 Score=84.53 Aligned_cols=74 Identities=16% Similarity=0.157 Sum_probs=66.0
Q ss_pred CCCCcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcC
Q psy13691 7 DLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQIG 81 (103)
Q Consensus 7 d~~LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lg 81 (103)
++.+|++++.|++|+...+. .++.+++.+|..+||++++.|+.-|...||..|.+.||+||.++||.-|..--|
T Consensus 1 ~lli~k~PF~RLVRei~~~~-~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg 74 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDF-KTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRG 74 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTT-CSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred CCccccchHHHHHHHHHHHc-CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhC
Confidence 46899999999999996543 234899999999999999999999999999999999999999999999987554
No 19
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=99.30 E-value=6.1e-12 Score=83.00 Aligned_cols=75 Identities=17% Similarity=0.159 Sum_probs=61.4
Q ss_pred CccCCCCcHHHHHHHHHhhCCCCCc--ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhh
Q psy13691 4 SLDDLNLPSAIIQRLIKEALPKDAE--GKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVK 78 (103)
Q Consensus 4 ~~~d~~LP~a~V~ri~K~~l~~~~~--~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~ 78 (103)
+..++.+|++++.|++++...+... .+.+++.+|..+||++++.|+.-|...||..|.+.||+||.++||.-|..
T Consensus 22 kst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 22 RSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp ------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 4678899999999999999754311 24899999999999999999999999999999999999999999998863
No 20
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=99.28 E-value=1.6e-11 Score=78.42 Aligned_cols=74 Identities=27% Similarity=0.225 Sum_probs=64.5
Q ss_pred CCCcHHHHHHHHHhhCCCCC-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcC
Q psy13691 8 LNLPSAIIQRLIKEALPKDA-EGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQIG 81 (103)
Q Consensus 8 ~~LP~a~V~ri~K~~l~~~~-~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lg 81 (103)
+.+|++++.|++|+...+-. +.+.+++.+|..+||++++.|+.-|...||..|.+.||+||.++|+.-|..--|
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg 76 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 76 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcc
Confidence 46899999999999874210 123799999999999999999999999999999999999999999999976544
No 21
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=99.20 E-value=3.6e-11 Score=83.09 Aligned_cols=77 Identities=17% Similarity=0.186 Sum_probs=67.9
Q ss_pred CccCCCCcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcC
Q psy13691 4 SLDDLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQIG 81 (103)
Q Consensus 4 ~~~d~~LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lg 81 (103)
...++.||++++.|++++...+. .++.+++.+|..+||++++.|+.-|...||..|.+.||+||.++||..|..--|
T Consensus 57 kst~lLIpk~PF~RLVREI~~~~-~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg 133 (136)
T 1tzy_C 57 KSTELLIRKLPFQRLVREIAQDF-KTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133 (136)
T ss_dssp HCCSCCSCHHHHHHHHHHHHHHH-CTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHT
T ss_pred cchhhhhccchHHHHHHHHHHHh-hhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhC
Confidence 45789999999999999995421 123899999999999999999999999999999999999999999999986544
No 22
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=99.20 E-value=2.9e-11 Score=83.87 Aligned_cols=79 Identities=25% Similarity=0.213 Sum_probs=66.6
Q ss_pred CccCCCCcHHHHHHHHHhhCCCCC-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcCc
Q psy13691 4 SLDDLNLPSAIIQRLIKEALPKDA-EGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQIGF 82 (103)
Q Consensus 4 ~~~d~~LP~a~V~ri~K~~l~~~~-~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lgf 82 (103)
...++.||++.+.|++++...+-. +.+.+++.+|..+||++++.|+.-|...||..|.+.||+||.++||..|..--|.
T Consensus 56 kst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrirg~ 135 (140)
T 3nqu_A 56 KSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 135 (140)
T ss_dssp ---CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC-
T ss_pred cccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhccc
Confidence 467899999999999999874210 1137999999999999999999999999999999999999999999999876554
No 23
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=99.19 E-value=3e-11 Score=84.99 Aligned_cols=78 Identities=26% Similarity=0.207 Sum_probs=66.7
Q ss_pred CccCCCCcHHHHHHHHHhhCCCCC-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcC
Q psy13691 4 SLDDLNLPSAIIQRLIKEALPKDA-EGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQIG 81 (103)
Q Consensus 4 ~~~d~~LP~a~V~ri~K~~l~~~~-~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lg 81 (103)
...++.||++.+.||+++...+-. +.+.+++.+|..+||++++.|+.-|...||..|.+.||+||.++||..|..--|
T Consensus 72 kSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIrg 150 (156)
T 3r45_A 72 KSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 150 (156)
T ss_dssp ---CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHcc
Confidence 467899999999999999975421 124799999999999999999999999999999999999999999999976443
No 24
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.11 E-value=6.7e-10 Score=68.92 Aligned_cols=65 Identities=15% Similarity=0.168 Sum_probs=60.8
Q ss_pred CCCcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhh
Q psy13691 8 LNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVK 78 (103)
Q Consensus 8 ~~LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~ 78 (103)
..||.++|.+|.++..- .++|.|+...|.+-.+..+..|+.+|...+.+.||||++.+||-.||+
T Consensus 5 s~lp~~~v~~iaes~Gi------~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 5 SSISAESMKVIAESIGV------GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCCHHHHHHHHHHTTC------CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHCCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 38999999999999843 379999999999999999999999999999999999999999999985
No 25
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.97 E-value=2.3e-09 Score=71.97 Aligned_cols=64 Identities=16% Similarity=0.087 Sum_probs=58.1
Q ss_pred HHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhc
Q psy13691 14 IIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQI 80 (103)
Q Consensus 14 ~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~l 80 (103)
+|.||+++...+ .++.+|+++..+|.+.+..|+.-++..+...|+++|||||+++||..+++..
T Consensus 32 ~V~rIvke~gae---r~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~ 95 (113)
T 4dra_A 32 TVGCLCEEVALD---KEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRS 95 (113)
T ss_dssp HHHHHHHHHHHH---HTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC
T ss_pred HHHHHHHHHHHH---cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhC
Confidence 588999988543 1277999999999999999999999999999999999999999999999875
No 26
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.86 E-value=1.3e-08 Score=67.75 Aligned_cols=79 Identities=11% Similarity=0.085 Sum_probs=63.9
Q ss_pred HHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcCchHHHHHHHHHH
Q psy13691 14 IIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQIGFEVIIEILGKSY 93 (103)
Q Consensus 14 ~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~~~~~~l~~~l 93 (103)
+|.||+++...+ ...++|+++..+|.+.+..|+.-++..|...|++.|||||+.+||.-|++.. +.....++.+.
T Consensus 24 ~V~rI~~~~g~~---~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn--~~l~~~l~~~~ 98 (107)
T 3b0b_B 24 TTGCLCQDVAED---KGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRS--NSLLKYITQKS 98 (107)
T ss_dssp HHHHHHHHHHHH---HTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHhhh---cCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhC--HHHHHHHHHHH
Confidence 488999887542 1168999999999999999999999999999999999999999999999875 23344444444
Q ss_pred HHHH
Q psy13691 94 NAAV 97 (103)
Q Consensus 94 ~~~k 97 (103)
++-+
T Consensus 99 ~el~ 102 (107)
T 3b0b_B 99 DELA 102 (107)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 27
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.85 E-value=1.4e-08 Score=65.73 Aligned_cols=64 Identities=11% Similarity=0.150 Sum_probs=58.4
Q ss_pred HHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhc
Q psy13691 14 IIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQI 80 (103)
Q Consensus 14 ~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~l 80 (103)
.|.||+.+.++.+ ++.+|+++..+|.+.+..++..++..+...|+++|||||+++||.-+++..
T Consensus 17 ~V~ki~~e~~~~~---g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn 80 (90)
T 3v9r_A 17 RVEERLQQVLSSE---DIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQ 80 (90)
T ss_dssp HHHHHHHHHSCSS---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhc---CceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC
Confidence 5789999997643 278999999999999999999999999999999999999999999998864
No 28
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=98.83 E-value=1.7e-08 Score=68.52 Aligned_cols=67 Identities=12% Similarity=0.158 Sum_probs=62.3
Q ss_pred CCCCcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhh
Q psy13691 7 DLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVK 78 (103)
Q Consensus 7 d~~LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~ 78 (103)
.+.||.+.|.|+||+.-.. .+|+.+|...|..+.+.|...|...|...|.+.+|++|+++||..|++
T Consensus 21 gL~fPV~ri~R~Lk~~~~a-----~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 87 (123)
T 2nqb_C 21 GLQFPVGRIHRLLRKGNYA-----ERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 87 (123)
T ss_dssp TCSSCHHHHHHHHHHTTSC-----SEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CeeccHHHHHHHHHccccc-----cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHh
Confidence 5789999999999997322 599999999999999999999999999999999999999999999987
No 29
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=98.82 E-value=1.9e-08 Score=68.00 Aligned_cols=67 Identities=12% Similarity=0.220 Sum_probs=62.4
Q ss_pred CCCCcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhh
Q psy13691 7 DLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVK 78 (103)
Q Consensus 7 d~~LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~ 78 (103)
.+.||.+.|.|+||+.-. . .+|+.+|...|..+.+.|...|...|...|.+.||++|+++||..|++
T Consensus 20 gLqfPV~ri~R~Lk~~~~-a----~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~ 86 (120)
T 2f8n_G 20 GVIFPVGRMLRYIKKGHP-K----YRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA 86 (120)
T ss_dssp TCSSCHHHHHHHHHHHSS-S----CEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CccCChHHHHHHHHcCcc-c----cccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 578999999999999843 2 599999999999999999999999999999999999999999999987
No 30
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=98.80 E-value=2.2e-08 Score=68.51 Aligned_cols=67 Identities=10% Similarity=0.157 Sum_probs=62.3
Q ss_pred CCCCcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhh
Q psy13691 7 DLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVK 78 (103)
Q Consensus 7 d~~LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~ 78 (103)
.+.||.+.|.|+||+.-.. .+|+.+|...|..+.+.|...|...|...|.+.+|++|+++||..|++
T Consensus 23 gLqfPV~rI~R~Lk~~~~a-----~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 89 (129)
T 1tzy_A 23 GLQFPVGRVHRLLRKGNYA-----ERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (129)
T ss_dssp TCSSCHHHHHHHHHHTTSS-----SEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ceeccHHHHHHHHHccccc-----cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 5789999999999997322 599999999999999999999999999999999999999999999987
No 31
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.80 E-value=1.9e-08 Score=69.67 Aligned_cols=64 Identities=14% Similarity=0.079 Sum_probs=57.4
Q ss_pred HHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhc
Q psy13691 14 IIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQI 80 (103)
Q Consensus 14 ~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~l 80 (103)
+|.||+++...+. ++.+|+++..+|.+.+..|+..|+..+...|++.|||||+++||..+++..
T Consensus 24 ~VgkIvee~~~~~---~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn 87 (140)
T 3vh5_A 24 TTGALAQDVAEDK---GVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRS 87 (140)
T ss_dssp HHHHHHHHHHHHH---TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhc---CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC
Confidence 5788888874431 278999999999999999999999999999999999999999999999875
No 32
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=98.80 E-value=2.3e-08 Score=68.31 Aligned_cols=69 Identities=12% Similarity=0.129 Sum_probs=63.1
Q ss_pred CCCCcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhh
Q psy13691 7 DLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQ 79 (103)
Q Consensus 7 d~~LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~ 79 (103)
.+.||.+.|.|+||+.-.-. .+|+.+|...|..+.+.|...|...|...|.+.||++|+++||..|+..
T Consensus 25 gLqfPV~ri~R~Lk~~~~a~----~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 25 GLQFPVGRIHRHLKSRTTSH----GRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp TCSSCHHHHHHHHHHTSCSS----CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred CccCChHHHHHHHHHcccch----hhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 57899999999999975322 4999999999999999999999999999999999999999999999873
No 33
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.78 E-value=2.1e-08 Score=68.81 Aligned_cols=67 Identities=9% Similarity=0.148 Sum_probs=62.3
Q ss_pred CCCCcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhh
Q psy13691 7 DLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVK 78 (103)
Q Consensus 7 d~~LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~ 78 (103)
.+.||.+.|.|+||+.-.. .+|+.+|...|..+.+.|...|...|...|.+.+|++|+++||..|++
T Consensus 23 gLqfPV~rI~R~Lk~~~~a-----~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~ 89 (131)
T 1id3_C 23 GLTFPVGRVHRLLRRGNYA-----QRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (131)
T ss_dssp TCSSCHHHHHHHHHTTCSC-----SEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CeecCHHHHHHHHHccccc-----cccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 6799999999999997322 599999999999999999999999999999999999999999999987
No 34
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=98.75 E-value=2.3e-08 Score=67.79 Aligned_cols=57 Identities=18% Similarity=0.292 Sum_probs=47.7
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcCchHH
Q psy13691 29 GKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQIGFEVI 85 (103)
Q Consensus 29 ~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~~~ 85 (103)
|..|||.|+-+.+.+..+.|+..+...|...+++.|||||+++||.-||+..|-.-|
T Consensus 61 GvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~~ly 117 (121)
T 2ly8_A 61 GSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLY 117 (121)
T ss_dssp CSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTCGGG
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCCcCC
Confidence 455777777777777777777888889999999999999999999999999886543
No 35
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=98.74 E-value=3.9e-08 Score=68.81 Aligned_cols=67 Identities=10% Similarity=0.160 Sum_probs=62.2
Q ss_pred CCCCcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhh
Q psy13691 7 DLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVK 78 (103)
Q Consensus 7 d~~LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~ 78 (103)
.+.||.+.|.|+||+.-.- .||+.+|...|..+.+.|...|...|...|.+.+|++|+++||..|++
T Consensus 42 gLqFPVgrI~R~LK~~~~a-----~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~ 108 (149)
T 2f8n_K 42 GLQFPVGRVHRLLRKGNYS-----ERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 108 (149)
T ss_dssp TCSSCHHHHHHHHHHTTSC-----SEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CeeccHHHHHHHHHccccc-----cccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHh
Confidence 5789999999999997322 599999999999999999999999999999999999999999999987
No 36
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.74 E-value=7.6e-08 Score=59.26 Aligned_cols=61 Identities=18% Similarity=0.111 Sum_probs=55.8
Q ss_pred HHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhh
Q psy13691 13 AIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQ 79 (103)
Q Consensus 13 a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~ 79 (103)
..|.||+|+..- .+++.++...|.+.+..++.-+..+|...|.+.|||||+.+||..|++.
T Consensus 5 ~~i~~iLk~~G~------~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 5 QVIMSILKELNV------QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHHTTC------CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHCCC------cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 368899999743 3799999999999999999999999999999999999999999999874
No 37
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.59 E-value=1.5e-07 Score=67.89 Aligned_cols=68 Identities=13% Similarity=0.158 Sum_probs=62.4
Q ss_pred CCCCcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhh
Q psy13691 7 DLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVK 78 (103)
Q Consensus 7 d~~LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~ 78 (103)
.+.||.+.|.|+||+.-... .+|+.+|...|..+.+.+...|...|...|.+.||++|+|+||..|+.
T Consensus 103 gl~fPv~ri~R~lk~~~~a~----~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~ 170 (192)
T 2jss_A 103 GLQFPVGRIKRYLKRHATGR----TRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIR 170 (192)
T ss_dssp SCCSCHHHHHHHHHHTTCSS----CCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHhcCccc----cccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Confidence 67999999999999973222 489999999999999999999999999999999999999999999987
No 38
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=98.56 E-value=5.9e-07 Score=57.36 Aligned_cols=77 Identities=14% Similarity=0.182 Sum_probs=63.5
Q ss_pred CCCCccCCCCcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhc
Q psy13691 1 MAESLDDLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQI 80 (103)
Q Consensus 1 m~~~~~d~~LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~l 80 (103)
|.+...+..+|..+|.||++....++ +.+||+||..++.+....|+..-...|...+..++..+|..+|+-+.+-.|
T Consensus 4 ~~~~~~~~~i~~~li~ril~~~F~~~---kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~pQL 80 (84)
T 4dra_E 4 MEGAGAGSGFRKELVSRLLHLHFKDD---KTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQL 80 (84)
T ss_dssp -------CCCCHHHHHHHHHTTCSST---TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred cccCCCCCCCCHHHHHHHHHHHhcCC---CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 44455678999999999999988743 389999999999999999999999999999999999999999998877544
No 39
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=98.53 E-value=3.6e-07 Score=62.03 Aligned_cols=67 Identities=15% Similarity=0.179 Sum_probs=60.7
Q ss_pred HHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcCchH
Q psy13691 13 AIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQIGFEV 84 (103)
Q Consensus 13 a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~~ 84 (103)
..|+|++|++-|+ ..||.+|...|+.....+..-|+.+|...+...+|+||+.+||..|++.+==++
T Consensus 37 ~YIyKVLKQVhpd-----~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpGE 103 (123)
T 2nqb_D 37 IYIYTVLKQVHPD-----TGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGE 103 (123)
T ss_dssp HHHHHHHHHHCTT-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHhCCC-----CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhCcHH
Confidence 5689999999886 589999999999999999999999999999999999999999999997554343
No 40
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.53 E-value=1.6e-07 Score=69.80 Aligned_cols=76 Identities=17% Similarity=0.164 Sum_probs=65.4
Q ss_pred cCCCCcHHHHHHHHHhhCCCCCc--ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcC
Q psy13691 6 DDLNLPSAIIQRLIKEALPKDAE--GKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQIG 81 (103)
Q Consensus 6 ~d~~LP~a~V~ri~K~~l~~~~~--~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lg 81 (103)
..+.+|+.+++|++++..++... .+.+++.+|..+||++++.|+.-|...+|-.|.+.||.||.+.|+.-|..--|
T Consensus 8 ~~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg 85 (235)
T 2l5a_A 8 KKLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRG 85 (235)
T ss_dssp ---CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSC
T ss_pred ccccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhh
Confidence 46789999999999999776322 25899999999999999999999999999999999999999999999976544
No 41
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=98.50 E-value=4.7e-07 Score=61.64 Aligned_cols=67 Identities=13% Similarity=0.169 Sum_probs=60.7
Q ss_pred HHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcCchH
Q psy13691 13 AIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQIGFEV 84 (103)
Q Consensus 13 a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~~ 84 (103)
..|+|++|++-|+ ..||.+|...|+.....+..-|+.+|...+...+|+||+.+||..|++.+==++
T Consensus 40 ~YIyKVLKQVhpd-----~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpGE 106 (126)
T 1tzy_B 40 IYVYKVLKQVHPD-----TGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGE 106 (126)
T ss_dssp HHHHHHHHHHCTT-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHhCCC-----CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCcHH
Confidence 4699999999886 589999999999999999999999999999999999999999999997554443
No 42
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.36 E-value=5.9e-07 Score=66.77 Aligned_cols=53 Identities=19% Similarity=0.316 Sum_probs=50.5
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcC
Q psy13691 29 GKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQIG 81 (103)
Q Consensus 29 ~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lg 81 (103)
|.-|||.++.+.+....+.|+.-+...|...|++.+||||+++||..||+..|
T Consensus 175 GVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~g 227 (235)
T 2l5a_A 175 GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 227 (235)
T ss_dssp TCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcC
Confidence 44699999999999999999999999999999999999999999999999776
No 43
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=98.36 E-value=3.6e-06 Score=53.34 Aligned_cols=73 Identities=14% Similarity=0.184 Sum_probs=63.6
Q ss_pred ccCCCCcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhc
Q psy13691 5 LDDLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQI 80 (103)
Q Consensus 5 ~~d~~LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~l 80 (103)
..+..+|...|.||++....+. +.||++||..++.+....||..-...|...++.++-..|..+|+-+.+-.|
T Consensus 4 ~~~~~~~~~lI~ril~~~f~~~---ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~pqL 76 (81)
T 3b0b_C 4 EREGGFRKETVERLLRLHFRDG---RTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQL 76 (81)
T ss_dssp ---CCCCHHHHHHHHHHHCCST---TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHhccC---cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHHHH
Confidence 3467899999999999998854 379999999999999999999999999999999999999999998876543
No 44
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.24 E-value=4.9e-06 Score=59.89 Aligned_cols=63 Identities=19% Similarity=0.269 Sum_probs=58.6
Q ss_pred HHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhh
Q psy13691 12 SAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQ 79 (103)
Q Consensus 12 ~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~ 79 (103)
..-|+|+.|+.-|+ ..||.+|...|......+...|+.+|...+...+|+||+.+||..|++.
T Consensus 6 ~~yi~kvLkqv~p~-----~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl 68 (192)
T 2jss_A 6 SSYIYKVLKQTHPD-----TGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRL 68 (192)
T ss_dssp HHHHHHHHHHHCSS-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHH
T ss_pred HHHHHHHHcccCCC-----CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 35689999999885 5899999999999999999999999999999999999999999999973
No 45
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=98.19 E-value=1.6e-05 Score=49.83 Aligned_cols=66 Identities=26% Similarity=0.274 Sum_probs=61.5
Q ss_pred CCcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhh
Q psy13691 9 NLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQ 79 (103)
Q Consensus 9 ~LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~ 79 (103)
-|++..+..++++.-|. ..+..|+.++|.+.|..||.-++..|...|++-|-.|+...||.-.|++
T Consensus 5 vl~k~~L~~Lv~~idp~-----~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDPN-----EQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp SSCHHHHHHHHHHHCSS-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 47999999999999664 6999999999999999999999999999999999999999999998874
No 46
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=97.91 E-value=9.2e-05 Score=47.49 Aligned_cols=67 Identities=25% Similarity=0.383 Sum_probs=60.3
Q ss_pred CCcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCcChhhHHHhhhhcC
Q psy13691 9 NLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKN-RKTLSGVDVIEGVKQIG 81 (103)
Q Consensus 9 ~LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~-RkTI~~eDV~~Al~~lg 81 (103)
.||++.|.|+|...++ ..++.+...++.-.+-+||..|..+|.++..+.+ +..|.|.||-.|...|.
T Consensus 16 ~f~k~~vKrl~~~~~~------~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~ 83 (89)
T 1bh9_B 16 AFPKAAIKRLIQSITG------TSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLK 83 (89)
T ss_dssp CCCHHHHHHHHHHHHS------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHcC------CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 7999999999999974 4799999999999999999999999999997765 55899999999988764
No 47
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=97.30 E-value=0.00065 Score=43.45 Aligned_cols=50 Identities=12% Similarity=0.225 Sum_probs=43.0
Q ss_pred CcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13691 10 LPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANE 62 (103)
Q Consensus 10 LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~ 62 (103)
+|+.+|.||++....+. +.||++||..++++....||..-...|++....
T Consensus 2 ip~~llaRIL~~~F~~~---kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~ 51 (88)
T 3v9r_B 2 LSKEALIKILSQNEGGN---DMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKD 51 (88)
T ss_dssp CCSHHHHHHHTTTSCSS---CCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhCCC---CceecHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 79999999999877654 489999999999999999999888888765544
No 48
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.00043 Score=46.69 Aligned_cols=61 Identities=18% Similarity=0.227 Sum_probs=48.7
Q ss_pred CcHHHHHHHHHhhCCCCC--cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCcCh
Q psy13691 10 LPSAIIQRLIKEALPKDA--EGKINVSKDVRLAAGKAASLFILHLTTEALSIANEK---NRKTLSG 70 (103)
Q Consensus 10 LP~a~V~ri~K~~l~~~~--~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~---~RkTI~~ 70 (103)
+|+.+..|++++...+-. +.+.+++.+|..+||++++.|+.-|...+|-.|.+. |=|-|+.
T Consensus 2 I~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~ 67 (121)
T 2ly8_A 2 ISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISG 67 (121)
T ss_dssp CSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSS
T ss_pred CCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhH
Confidence 788999999988654311 124899999999999999999999999999888776 4455665
No 49
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.77 E-value=0.3 Score=35.99 Aligned_cols=81 Identities=7% Similarity=0.101 Sum_probs=54.5
Q ss_pred CcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhh-cCchH
Q psy13691 10 LPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAAS----LFILHLTTEALSIANEKNRKTLSGVDVIEGVKQ-IGFEV 84 (103)
Q Consensus 10 LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~----~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~-lgf~~ 84 (103)
++...+..|++..+... ...++.++...+.+.+. -.+..+...|...|...++++|+.+||..|++. ++...
T Consensus 259 ~~~~e~~~il~~~~~~~---~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~~~~~~ 335 (368)
T 3uk6_A 259 YSEKDTKQILRIRCEEE---DVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDESR 335 (368)
T ss_dssp CCHHHHHHHHHHHHHHT---TCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHSBCHHH
T ss_pred CCHHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCHHH
Confidence 34556666666544321 16799999999988876 245556666777788889999999999999986 55444
Q ss_pred HHHHHHHHH
Q psy13691 85 IIEILGKSY 93 (103)
Q Consensus 85 ~~~~l~~~l 93 (103)
-...++++-
T Consensus 336 ~~~~~~~~~ 344 (368)
T 3uk6_A 336 STQYMKEYQ 344 (368)
T ss_dssp HHHHHC---
T ss_pred HHHHHHHhh
Confidence 444444433
No 50
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=93.70 E-value=0.29 Score=42.41 Aligned_cols=67 Identities=15% Similarity=0.158 Sum_probs=56.0
Q ss_pred CCCCcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhh
Q psy13691 7 DLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQ 79 (103)
Q Consensus 7 d~~LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~ 79 (103)
.+.+|.++|.|++|.... -||+..|..-+.-..+-....+...|-..|...+++.|+++|+..|+..
T Consensus 102 ~l~~pv~~~~~~l~~~~~------~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~ 168 (1049)
T 3ksy_A 102 PLSLPVEKIHPLLKEVLG------YKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCA 168 (1049)
T ss_dssp SCSSCHHHHHHHHHHHHC------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHH
T ss_pred CccccHHHHHHHhhcccc------cccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccC
Confidence 578999999999976643 4899999988888777777777777778888899999999999999863
No 51
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=89.61 E-value=1.3 Score=34.39 Aligned_cols=80 Identities=18% Similarity=0.197 Sum_probs=52.3
Q ss_pred cHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHH-H---HHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhc-CchHH
Q psy13691 11 PSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAA-S---LFILHLTTEALSIANEKNRKTLSGVDVIEGVKQI-GFEVI 85 (103)
Q Consensus 11 P~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~-~---~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~l-gf~~~ 85 (103)
+...+..+++..+... ...++.++...+.+.+ . .....+...|...|..+++..|+.+||..|+.-+ +...-
T Consensus 367 ~~~e~~~iL~~~~~~~---~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~~d~~~~ 443 (456)
T 2c9o_A 367 TPQEMKQIIKIRAQTE---GINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFYDAKSS 443 (456)
T ss_dssp CHHHHHHHHHHHHHHH---TCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHSCCHHHH
T ss_pred CHHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHhcChHHH
Confidence 3445555555443210 1568999988888876 2 3455666778888999999999999999998653 44444
Q ss_pred HHHHHHHH
Q psy13691 86 IEILGKSY 93 (103)
Q Consensus 86 ~~~l~~~l 93 (103)
+.-|+++.
T Consensus 444 ~~~~~~~~ 451 (456)
T 2c9o_A 444 AKILADQQ 451 (456)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHH
Confidence 44444433
No 52
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=89.32 E-value=2.3 Score=30.90 Aligned_cols=71 Identities=14% Similarity=0.091 Sum_probs=50.7
Q ss_pred HHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHH------HHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcCch
Q psy13691 12 SAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAAS------LFILHLTTEALSIANEKNRKTLSGVDVIEGVKQIGFE 83 (103)
Q Consensus 12 ~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~------~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~ 83 (103)
..-+..|++..+... ..+..++.++...+.+.+. -.+..+...|...|...++.+|+.+||..|++....+
T Consensus 203 ~~~~~~il~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~ 279 (387)
T 2v1u_A 203 APQLRDILETRAEEA-FNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIERD 279 (387)
T ss_dssp HHHHHHHHHHHHHHH-BCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh-ccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhhc
Confidence 556666666543210 0015789999998888876 4556667778888888899999999999999877433
No 53
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=87.25 E-value=3.2 Score=30.21 Aligned_cols=74 Identities=14% Similarity=0.170 Sum_probs=51.1
Q ss_pred CcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhCCCCCcChhhHHHhh
Q psy13691 10 LPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAA------------SLFILHLTTEALSIANEKNRKTLSGVDVIEGV 77 (103)
Q Consensus 10 LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~------------~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al 77 (103)
++...+..+++..+... .....++.++...+.+.+ --++..+...|...|..+++.+|+.+||..++
T Consensus 193 l~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~ 271 (389)
T 1fnn_A 193 YTKDQIFDILLDRAKAG-LAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSS 271 (389)
T ss_dssp CBHHHHHHHHHHHHHHH-BCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Confidence 34455666665544320 001368999999888887 23455666778888888899999999999998
Q ss_pred hhcCchH
Q psy13691 78 KQIGFEV 84 (103)
Q Consensus 78 ~~lgf~~ 84 (103)
+......
T Consensus 272 ~~~~~~~ 278 (389)
T 1fnn_A 272 KEVLFGI 278 (389)
T ss_dssp HHHSCCC
T ss_pred HHHhhhh
Confidence 8765443
No 54
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=87.10 E-value=5.6 Score=28.68 Aligned_cols=76 Identities=11% Similarity=0.007 Sum_probs=51.3
Q ss_pred CcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHH------HHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcCch
Q psy13691 10 LPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAAS------LFILHLTTEALSIANEKNRKTLSGVDVIEGVKQIGFE 83 (103)
Q Consensus 10 LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~------~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~ 83 (103)
|+..-+..+++..+... .....++.++...+.+.+. ..+..+...|...+..+++.+|+.+||..|++.+..+
T Consensus 197 l~~~~~~~il~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~ 275 (386)
T 2qby_A 197 YNAEELEDILTKRAQMA-FKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIERD 275 (386)
T ss_dssp CCHHHHHHHHHHHHHHH-BCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhh-ccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhhc
Confidence 34555666666533210 0014689999888887775 2344566778888888899999999999999877544
Q ss_pred HHH
Q psy13691 84 VII 86 (103)
Q Consensus 84 ~~~ 86 (103)
.+.
T Consensus 276 ~~~ 278 (386)
T 2qby_A 276 RVR 278 (386)
T ss_dssp HHH
T ss_pred hHH
Confidence 433
No 55
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=86.87 E-value=0.76 Score=27.18 Aligned_cols=43 Identities=16% Similarity=0.029 Sum_probs=33.7
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhCCCCCcChhhHHHhhhhc
Q psy13691 38 RLAAGKAASLF----ILHLTTEALSIANEKNRKTLSGVDVIEGVKQI 80 (103)
Q Consensus 38 ~~~l~~~~~~F----i~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~l 80 (103)
...|.+.+.-| |..|..+|...|...++..|+.+|+..|++..
T Consensus 27 l~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v 73 (78)
T 3kw6_A 27 LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 73 (78)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 44455555545 77788889888999999999999999999753
No 56
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=84.80 E-value=1.5 Score=28.39 Aligned_cols=35 Identities=14% Similarity=0.266 Sum_probs=30.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhh
Q psy13691 32 NVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVK 78 (103)
Q Consensus 32 ~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~ 78 (103)
+++..++.+|.. |...|...+...|.++|++.||=
T Consensus 5 ~~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHlLlaLl 39 (148)
T 1khy_A 5 RLTNKFQLALAD------------AQSLALGHDNQFIEPLHLMSALL 39 (148)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHH
T ss_pred hhhHHHHHHHHH------------HHHHHHHcCCCccCHHHHHHHHH
Confidence 678888888776 77889999999999999999984
No 57
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=84.10 E-value=1.7 Score=28.50 Aligned_cols=36 Identities=14% Similarity=0.095 Sum_probs=31.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhh
Q psy13691 32 NVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQ 79 (103)
Q Consensus 32 ~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~ 79 (103)
++|..+..+|+. |.+.|...+...|.++|++.||=.
T Consensus 6 ~~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHLLlaLl~ 41 (146)
T 3fh2_A 6 RFTDRARRVIVL------------AQEEARMLNHNYIGTEHILLGLIH 41 (146)
T ss_dssp GBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred hcCHHHHHHHHH------------HHHHHHHcCCCCchHHHHHHHHHh
Confidence 678888888876 778899999999999999999854
No 58
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=81.52 E-value=1.7 Score=25.89 Aligned_cols=33 Identities=21% Similarity=0.158 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcC
Q psy13691 49 ILHLTTEALSIANEKNRKTLSGVDVIEGVKQIG 81 (103)
Q Consensus 49 i~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lg 81 (103)
|..|..+|...|...++..|+.+|+..|++..-
T Consensus 40 i~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ 72 (83)
T 3aji_B 40 INSICQESGMLAVRENRYIVLAKDFEKAYKTVI 72 (83)
T ss_dssp HHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHc
Confidence 445667788888899999999999999998754
No 59
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=81.39 E-value=1.8 Score=25.84 Aligned_cols=30 Identities=27% Similarity=0.107 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhCCCCCcChhhHHHhhhhcC
Q psy13691 52 LTTEALSIANEKNRKTLSGVDVIEGVKQIG 81 (103)
Q Consensus 52 lt~~A~~~a~~~~RkTI~~eDV~~Al~~lg 81 (103)
|..+|...|...++..|+.+|+..|++..-
T Consensus 40 l~~eAa~~ai~~~~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 40 IMQEAGLRAVRKNRYVILQSDLEEAYATQV 69 (82)
T ss_dssp HHHHHHHHHHHTTCSEECHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccCCcCHHHHHHHHHHHH
Confidence 445677778888899999999999998763
No 60
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=81.20 E-value=5.3 Score=27.46 Aligned_cols=58 Identities=19% Similarity=0.121 Sum_probs=50.8
Q ss_pred CcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhH
Q psy13691 10 LPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDV 73 (103)
Q Consensus 10 LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV 73 (103)
+|-+.+.|+.+.+.+- -|-|+-..-+....+.=+.-|.--|...|+.+||.+|.+.|+
T Consensus 3 m~~~~~e~lFR~aa~L------dvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DL 60 (148)
T 1wwi_A 3 MKVAEFERLFRQAAGL------DVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDL 60 (148)
T ss_dssp SCHHHHHHHHHHHHCC------CCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGS
T ss_pred CCHHHHHHHHHHHhcc------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 5778899999999764 477888888888888888889999999999999999999886
No 61
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=81.00 E-value=3.7 Score=26.57 Aligned_cols=35 Identities=9% Similarity=0.081 Sum_probs=30.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhh
Q psy13691 32 NVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVK 78 (103)
Q Consensus 32 ~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~ 78 (103)
+++..+..+|+. |.+.|...+...|.++|++.||=
T Consensus 5 ~~t~~~~~al~~------------A~~~A~~~~h~~i~~eHlLlaLl 39 (150)
T 2y1q_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLV 39 (150)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHH
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHH
Confidence 688888888876 77789999999999999999984
No 62
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=80.97 E-value=6.3 Score=25.41 Aligned_cols=56 Identities=11% Similarity=0.148 Sum_probs=36.7
Q ss_pred cHHHHHHHHHhhCCCCC--cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhh
Q psy13691 11 PSAIIQRLIKEALPKDA--EGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVK 78 (103)
Q Consensus 11 P~a~V~ri~K~~l~~~~--~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~ 78 (103)
....+.+-+...+...+ .+...+|..+..+|.. |...|..-|...|+.+|++.||=
T Consensus 56 ~~~~l~~~l~~~l~~~~~~~~~~~~s~~~~~vL~~------------A~~~A~~~~~~~i~~ehlLlall 113 (150)
T 2y1q_A 56 GSEKIQKEVESLIGRAQEMSQTIHYTPRAKKVIEL------------SMDEARKLGHSYVGTEHILLGLI 113 (150)
T ss_dssp CHHHHHHHHHHHHCCC-----CCEECHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCcccccCCCCHHHHHHHHH------------HHHHHHHcCCCeecHHHHHHHHH
Confidence 34445555554443322 1235677777777665 67778888999999999999984
No 63
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=80.93 E-value=11 Score=30.18 Aligned_cols=64 Identities=20% Similarity=0.090 Sum_probs=45.8
Q ss_pred ccccHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcCchHHHHHHHHHHHH
Q psy13691 31 INVSKDVRLAAGKAAS-------------LFILHLTTEALSIANEKNRKTLSGVDVIEGVKQIGFEVIIEILGKSYNA 95 (103)
Q Consensus 31 ~~iskda~~~l~~~~~-------------~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~~~~~~l~~~l~~ 95 (103)
..++.++...|.+.+. .-+.-+...|..+|..+++..|+.+||..|++.-.. -.-..++.++..
T Consensus 313 ~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~~~~-i~~~~~e~~l~~ 389 (604)
T 3k1j_A 313 PHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKMAKP-LEKQLADWYIER 389 (604)
T ss_dssp CCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTCC-HHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHhhhh-hHHHHHHHHhcc
Confidence 4699999999888663 345556677888999999999999999999964322 222334444444
No 64
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=80.31 E-value=9.6 Score=24.70 Aligned_cols=60 Identities=10% Similarity=0.153 Sum_probs=42.4
Q ss_pred CCcHHHHHHHHHhhCCCCC---cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhc
Q psy13691 9 NLPSAIIQRLIKEALPKDA---EGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQI 80 (103)
Q Consensus 9 ~LP~a~V~ri~K~~l~~~~---~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~l 80 (103)
.+....+.+.+.+.++..+ ++...+|..+..+|.+ |...|...|...|+.+|++.||=.-
T Consensus 55 gv~~~~l~~~l~~~l~~~~~~~~~~~~~s~~~~~vL~~------------A~~~a~~~~~~~i~~eHlLlall~~ 117 (146)
T 3fh2_A 55 GISLDAVRQEVEEIIGQGSQPTTGHIPFTPRAKKVLEL------------SLREGLQMGHKYIGTEFLLLGLIRE 117 (146)
T ss_dssp TCCHHHHHHHHHHHHCCCSCCCCSCCCBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCCCcCCCcCCHHHHHHHHH------------HHHHHHHcCCCcCcHHHHHHHHHhC
Confidence 3444555555555544322 2346789999988887 6777888899999999999998543
No 65
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=80.09 E-value=6.4 Score=28.34 Aligned_cols=50 Identities=8% Similarity=-0.015 Sum_probs=39.8
Q ss_pred ccccHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhc
Q psy13691 31 INVSKDVRLAAGKAASL-------FILHLTTEALSIANEKNRKTLSGVDVIEGVKQI 80 (103)
Q Consensus 31 ~~iskda~~~l~~~~~~-------Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~l 80 (103)
+.++.++...|.+.+.. -+..+...|...|...++.+|+.+||..|+...
T Consensus 266 ~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 266 VEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMA 322 (350)
T ss_dssp CBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHH
Confidence 58999999998877653 345566667778888899999999999998753
No 66
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=79.94 E-value=2 Score=26.15 Aligned_cols=45 Identities=18% Similarity=0.098 Sum_probs=32.6
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcCch
Q psy13691 39 LAAGKAASLF----ILHLTTEALSIANEKNRKTLSGVDVIEGVKQIGFE 83 (103)
Q Consensus 39 ~~l~~~~~~F----i~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~ 83 (103)
..|.+.+.-| |.-|..+|...|...++..|+.+|+..|++..-.+
T Consensus 26 ~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~ 74 (88)
T 3vlf_B 26 ELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISG 74 (88)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC-
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcC
Confidence 3344444444 56667778888888889999999999999976543
No 67
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=79.32 E-value=5.7 Score=25.86 Aligned_cols=37 Identities=11% Similarity=0.163 Sum_probs=31.8
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhh
Q psy13691 31 INVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQ 79 (103)
Q Consensus 31 ~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~ 79 (103)
-+++..++.+|.. |...|...+...|.++|++.||=.
T Consensus 6 ~~~T~~a~~~l~~------------A~~~A~~~~~~~i~~eHLLlaLl~ 42 (145)
T 3fes_A 6 NRFTQRAKKAIDL------------AFESAKSLGHNIVGSEHILLGLLR 42 (145)
T ss_dssp CCBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHH
T ss_pred cccCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHHh
Confidence 3688999988877 777899999999999999999854
No 68
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=78.48 E-value=2.5 Score=25.77 Aligned_cols=32 Identities=22% Similarity=0.163 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhCCCCCcChhhHHHhhhhc
Q psy13691 49 ILHLTTEALSIANEKNRKTLSGVDVIEGVKQI 80 (103)
Q Consensus 49 i~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~l 80 (103)
|.-|..+|...|...++..|+.+|+..|++..
T Consensus 50 L~~l~~eAa~~alr~~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 50 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 44566778888888889999999999999753
No 69
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=78.14 E-value=1.9 Score=27.79 Aligned_cols=33 Identities=12% Similarity=0.259 Sum_probs=26.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhh
Q psy13691 33 VSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGV 77 (103)
Q Consensus 33 iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al 77 (103)
+|+.+..+|+. |.+.|...|...|.++|++.||
T Consensus 2 ~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHlLlaL 34 (143)
T 1k6k_A 2 LNQELELSLNM------------AFARAREHRHEFMTVEHLLLAL 34 (143)
T ss_dssp BCHHHHHHHHH------------HHHHHHHHTBSEECHHHHHHHH
T ss_pred CCHHHHHHHHH------------HHHHHHHcCCCCcCHHHHHHHH
Confidence 45666666655 7778888899999999999987
No 70
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=77.55 E-value=14 Score=26.73 Aligned_cols=71 Identities=8% Similarity=-0.016 Sum_probs=45.9
Q ss_pred CcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHH---H---HHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcCch
Q psy13691 10 LPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAAS---L---FILHLTTEALSIANEKNRKTLSGVDVIEGVKQIGFE 83 (103)
Q Consensus 10 LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~---~---Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~ 83 (103)
++..-+..|++..+... -....++.++...+.+.+. - .+..+...|...|. ++.+|+.+||..|++....+
T Consensus 197 l~~~~~~~il~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~~~ 273 (384)
T 2qby_B 197 YDAEQLKFILSKYAEYG-LIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYEQE 273 (384)
T ss_dssp CCHHHHHHHHHHHHHHT-SCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhh-cccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHhcc
Confidence 34566666776643210 0014788999888888776 1 23445555666665 67899999999999887433
No 71
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=77.43 E-value=17 Score=26.09 Aligned_cols=49 Identities=16% Similarity=0.077 Sum_probs=35.4
Q ss_pred ccccHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHhCCCCCcChhhHHHhhhh
Q psy13691 31 INVSKDVRLAAGKAASLF-----------------------ILHLTTEALSIANEKNRKTLSGVDVIEGVKQ 79 (103)
Q Consensus 31 ~~iskda~~~l~~~~~~F-----------------------i~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~ 79 (103)
+.++.++...+.+.+... ...+...|...|.-.+|..|+++||..++..
T Consensus 225 v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~ 296 (331)
T 2r44_A 225 VTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYD 296 (331)
T ss_dssp CBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 678888888776654321 2234455666777889999999999998874
No 72
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=76.05 E-value=5.5 Score=27.28 Aligned_cols=39 Identities=10% Similarity=-0.043 Sum_probs=33.5
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCcChhhHHHhhhh
Q psy13691 29 GKINVSKDVRLAAGKAASLFILHLTTEALSIAN-EKNRKTLSGVDVIEGVKQ 79 (103)
Q Consensus 29 ~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~-~~~RkTI~~eDV~~Al~~ 79 (103)
+...+|.++..+|++ |...|. +-|...|+.+|++.||=.
T Consensus 95 ~~~~~S~~l~~vL~~------------A~~~A~l~~gd~~I~teHLLLALl~ 134 (171)
T 3zri_A 95 TYPAFSPLLVELLQE------------AWLLSSTELEQAELRSGAIFLAALT 134 (171)
T ss_dssp SCCEECHHHHHHHHH------------HHHHHHTTTCCSSBCHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHH------------HHHHHHHHcCCCEEcHHHHHHHHHh
Confidence 346799999998887 888899 899999999999999843
No 73
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=74.76 E-value=14 Score=23.82 Aligned_cols=59 Identities=15% Similarity=0.112 Sum_probs=40.6
Q ss_pred cHHHHHHHHHhhCCCCC--cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcC
Q psy13691 11 PSAIIQRLIKEALPKDA--EGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQIG 81 (103)
Q Consensus 11 P~a~V~ri~K~~l~~~~--~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lg 81 (103)
....+.+-+...+...+ ++...+|..+..+|.+ |...|...|...|+.+|++.||=.-+
T Consensus 58 d~~~l~~~l~~~l~~~~~~~~~~~~s~~~~~vl~~------------A~~~A~~~~~~~v~~eHlLlAll~~~ 118 (145)
T 3fes_A 58 TEAYLEGKIVDMEGKGEEISEDIVLSPRSKQILEL------------SGMFANKLKTNYIGTEHILLAIIQEG 118 (145)
T ss_dssp CHHHHHHHHHHHHCCCSCCCSCCEECHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhCC
Confidence 33444444444433221 2346789998888877 77788889999999999999986544
No 74
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=73.89 E-value=7.4 Score=27.35 Aligned_cols=59 Identities=10% Similarity=-0.014 Sum_probs=52.6
Q ss_pred CCcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhH
Q psy13691 9 NLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDV 73 (103)
Q Consensus 9 ~LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV 73 (103)
-+|-+.+.|+.+.+.+- -|-|+-..-+....+.=+.-|.--|...|+.+||.+|.+.|+
T Consensus 26 vmg~~kferlFR~aagL------DvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DL 84 (171)
T 1r4v_A 26 PKGFDKLDHYFRTELDI------DLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADL 84 (171)
T ss_dssp CTTHHHHHHHHHHHHCC------CCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGS
T ss_pred cCChHHHHHHHHHHhcc------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 67899999999999764 488888888999999888888889999999999999999886
No 75
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=72.77 E-value=15 Score=23.37 Aligned_cols=37 Identities=11% Similarity=0.194 Sum_probs=30.9
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhh
Q psy13691 31 INVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQ 79 (103)
Q Consensus 31 ~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~ 79 (103)
..+|..+..++.. |...+...|...|+.+|++.||=.
T Consensus 78 ~~~s~~~~~~l~~------------A~~~A~~~~~~~i~~ehLLlall~ 114 (143)
T 1k6k_A 78 TQPTLSFQRVLQR------------AVFHVQSSGRNEVTGANVLVAIFS 114 (143)
T ss_dssp CEECHHHHHHHHH------------HHHHHHSSSCSCBCHHHHHHHHTT
T ss_pred CCCCHHHHHHHHH------------HHHHHHHcCCCccCHHHHHHHHHh
Confidence 5688888877766 777888889999999999999854
No 76
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=68.15 E-value=4.5 Score=23.93 Aligned_cols=23 Identities=17% Similarity=0.072 Sum_probs=19.5
Q ss_pred cChhhHHHhhhhcCchHHHHHHH
Q psy13691 68 LSGVDVIEGVKQIGFEVIIEILG 90 (103)
Q Consensus 68 I~~eDV~~Al~~lgf~~~~~~l~ 90 (103)
=+++||..-|+.+||++|.+...
T Consensus 5 Ws~~~V~~WL~~lgl~~Y~~~F~ 27 (76)
T 2f3n_A 5 WSKFDVGDWLESIHLGEHRDRFE 27 (76)
T ss_dssp CCHHHHHHHHHHTTCGGGHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHHH
Confidence 37899999999999999987654
No 77
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=67.86 E-value=4.6 Score=27.66 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=28.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhh
Q psy13691 32 NVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQ 79 (103)
Q Consensus 32 ~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~ 79 (103)
+++..++.+|+. |.+.|...+...|.++|++.||=+
T Consensus 24 kfT~~a~~aL~~------------A~~~A~~~~h~~I~~EHLLlaLL~ 59 (171)
T 3zri_A 24 KLNAQSKLALEQ------------AASLCIERQHPEVTLEHYLDVLLD 59 (171)
T ss_dssp HBCHHHHHHHHH------------HHHHHHHHTCSEECHHHHHHHHTT
T ss_pred HcCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHH
Confidence 466677776665 777888989999999999999843
No 78
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=66.04 E-value=7.4 Score=27.32 Aligned_cols=33 Identities=24% Similarity=0.111 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhc
Q psy13691 48 FILHLTTEALSIANEKNRKTLSGVDVIEGVKQI 80 (103)
Q Consensus 48 Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~l 80 (103)
-|..|...|...|...++.+|+.+|+..|+++.
T Consensus 226 ~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 226 ELKAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 455677788888889999999999999999865
No 79
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=64.46 E-value=14 Score=23.91 Aligned_cols=63 Identities=10% Similarity=0.024 Sum_probs=40.5
Q ss_pred CcHHHHHHHHHhhCCC-CCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhh
Q psy13691 10 LPSAIIQRLIKEALPK-DAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVK 78 (103)
Q Consensus 10 LP~a~V~ri~K~~l~~-~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~ 78 (103)
++..-+..+++..+.. + ..++.++...+.+.+.--+..+-......+... ++|+.+||..++.
T Consensus 161 ~~~~~~~~~l~~~~~~~~----~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 161 VPKEAMKKRLLEICEKEG----VKITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp CCHHHHHHHHHHHHHHHT----CCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 4455666666654432 2 568888888887776554554444444444433 6899999998875
No 80
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=63.64 E-value=6.2 Score=23.61 Aligned_cols=24 Identities=8% Similarity=0.086 Sum_probs=20.1
Q ss_pred CcChhhHHHhhhhcCchHHHHHHH
Q psy13691 67 TLSGVDVIEGVKQIGFEVIIEILG 90 (103)
Q Consensus 67 TI~~eDV~~Al~~lgf~~~~~~l~ 90 (103)
.=+++||..-|+.+||++|.+...
T Consensus 9 ~Ws~~~V~~WL~~lgl~~Y~~~F~ 32 (81)
T 3bq7_A 9 LWGTEEVAAWLEHLSLCEYKDIFT 32 (81)
T ss_dssp GCCHHHHHHHHHHTTCGGGHHHHH
T ss_pred hCCHHHHHHHHHHCCCHHHHHHHH
Confidence 357899999999999999987554
No 81
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=63.52 E-value=20 Score=22.77 Aligned_cols=36 Identities=11% Similarity=0.083 Sum_probs=27.6
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhh
Q psy13691 31 INVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVK 78 (103)
Q Consensus 31 ~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~ 78 (103)
..+|..+..++.. |...+...+...|+.+|++.||=
T Consensus 81 ~~~s~~~~~vl~~------------A~~~a~~~~~~~i~~ehlLlall 116 (148)
T 1khy_A 81 VQPSQDLVRVLNL------------CDKLAQKRGDNFISSELFVLAAL 116 (148)
T ss_dssp -CBCHHHHHHHHH------------HHHHHHHHTCSSBCHHHHHHHHH
T ss_pred cCcCHHHHHHHHH------------HHHHHHHcCCCeecHHHHHHHHH
Confidence 4567777666655 66777777889999999999985
No 82
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=60.31 E-value=13 Score=21.34 Aligned_cols=36 Identities=11% Similarity=0.015 Sum_probs=27.0
Q ss_pred CCCcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHH
Q psy13691 8 LNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLF 48 (103)
Q Consensus 8 ~~LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~F 48 (103)
..++.++|.|++...- .. ..||.+.+.-|.+++.++
T Consensus 10 aGVS~sTVSrvLng~~-~~----~~vs~et~~rI~~aa~~l 45 (65)
T 1uxc_A 10 AGVSRTTASYVINGKA-KQ----YRVSDKTVEKVMAVVREH 45 (65)
T ss_dssp HTSCHHHHHHHHHTCT-TT----TTCTTHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHcCCC-CC----CCCCHHHHHHHHHHHHHh
Confidence 3678999999997641 11 269999999998887654
No 83
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=60.02 E-value=21 Score=23.29 Aligned_cols=63 Identities=13% Similarity=0.011 Sum_probs=40.8
Q ss_pred CcHHHHHHHHHhhCCC-CCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhh
Q psy13691 10 LPSAIIQRLIKEALPK-DAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGV 77 (103)
Q Consensus 10 LP~a~V~ri~K~~l~~-~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al 77 (103)
++..-+..+++..+.. + ..++.++...+.+.+.--..++-......+ ..++++|+.+||..++
T Consensus 185 l~~~e~~~~l~~~~~~~~----~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~-~~~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 185 LDVEQIRHQLEHILNEEH----IAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVSTQAVSAML 248 (250)
T ss_dssp CCHHHHHHHHHHHHHHTT----CCBCHHHHHHHHHHHTTCHHHHHHHHHHHH-TTTTSSBCHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH-hccCceecHHHHHHHh
Confidence 4455566666654422 2 578899988888877655555555444433 3345689999998876
No 84
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=59.65 E-value=7 Score=23.11 Aligned_cols=50 Identities=12% Similarity=0.212 Sum_probs=38.0
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCCCcChhhHHHhhhhcC
Q psy13691 31 INVSKDVRLAAGKAASLFILHLTTEAL-SIANEKNRKTLSGVDVIEGVKQIG 81 (103)
Q Consensus 31 ~~iskda~~~l~~~~~~Fi~~lt~~A~-~~a~~~~RkTI~~eDV~~Al~~lg 81 (103)
+..+.||...|.+. =-|+.--..... ..|...|...|+.+.+..|=+.+|
T Consensus 4 l~Wt~EAe~~LkkI-P~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~~~~ 54 (63)
T 2kru_A 4 LSWTAEAEKMLGKV-PFFVRKKVRKNTDNYAREIGEPVVTADVFRKAKEHLG 54 (63)
T ss_dssp CEECHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHHhh
Confidence 67899999988883 356655554444 668999999999999998876554
No 85
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=58.85 E-value=5.8 Score=23.09 Aligned_cols=22 Identities=9% Similarity=0.048 Sum_probs=18.5
Q ss_pred cChhhHHHhhhhcCchHHHHHH
Q psy13691 68 LSGVDVIEGVKQIGFEVIIEIL 89 (103)
Q Consensus 68 I~~eDV~~Al~~lgf~~~~~~l 89 (103)
=+++||..-|+.+||++|.+..
T Consensus 7 Ws~~~V~~WL~~~gl~~y~~~F 28 (74)
T 2gle_A 7 WSVQQVSHWLVGLSLDQYVSEF 28 (74)
T ss_dssp CCSGGGHHHHHHTTTHHHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHH
Confidence 4689999999999999887643
No 86
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=58.31 E-value=13 Score=25.70 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcC
Q psy13691 49 ILHLTTEALSIANEKNRKTLSGVDVIEGVKQIG 81 (103)
Q Consensus 49 i~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lg 81 (103)
+..+..+|...|...++.+|+.+|+..|++..-
T Consensus 221 l~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 221 LANLVNEAALFAARGNKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHh
Confidence 445556777778888899999999999998653
No 87
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.19 E-value=11 Score=29.81 Aligned_cols=32 Identities=22% Similarity=0.175 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCcChhhHHHhhhh
Q psy13691 48 FILHLTTEALSIANEKNRKTLSGVDVIEGVKQ 79 (103)
Q Consensus 48 Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~ 79 (103)
=|.-|..+|...|..++|..|+.+|+..|++.
T Consensus 391 DI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 391 DIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp HHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 36677788888899999999999999999975
No 88
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.14 E-value=12 Score=29.52 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhCCCCCcChhhHHHhhhh
Q psy13691 49 ILHLTTEALSIANEKNRKTLSGVDVIEGVKQ 79 (103)
Q Consensus 49 i~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~ 79 (103)
|..|..+|...|..+++..|+.+|+..|++.
T Consensus 391 i~~l~~eA~~~air~~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 391 IRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421 (437)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 5667778888888999999999999999975
No 89
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=55.56 E-value=8.1 Score=22.74 Aligned_cols=50 Identities=8% Similarity=0.127 Sum_probs=36.1
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCCCcChhhHHHhhhhcC
Q psy13691 31 INVSKDVRLAAGKAASLFILHLTTEA-LSIANEKNRKTLSGVDVIEGVKQIG 81 (103)
Q Consensus 31 ~~iskda~~~l~~~~~~Fi~~lt~~A-~~~a~~~~RkTI~~eDV~~Al~~lg 81 (103)
+..+.||...|.+. =-|+.--.... -..|...|...|+.+.+..|=+.+|
T Consensus 3 l~Wt~EAe~~LkkI-P~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~~~~ 53 (62)
T 2l09_A 3 LRWTSEAKTKLKNI-PFFARSQAKARIEQLARQAEQDIVTPELVEQARLEFG 53 (62)
T ss_dssp CEECHHHHHHHHTS-CGGGHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHHHh
Confidence 56788888888773 34555444433 3668999999999999998866443
No 90
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=55.13 E-value=36 Score=26.33 Aligned_cols=60 Identities=12% Similarity=0.159 Sum_probs=42.7
Q ss_pred CCcHHHHHHHHHhhCCCCC--cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhc
Q psy13691 9 NLPSAIIQRLIKEALPKDA--EGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQI 80 (103)
Q Consensus 9 ~LP~a~V~ri~K~~l~~~~--~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~l 80 (103)
.+....+.+-+...++..+ .+...+|..+..+|.. |...|..-|...|..+|++.||=.-
T Consensus 54 gvd~~~l~~~l~~~l~~~~~~~~~~~~S~~~~~vL~~------------A~~~A~~~g~~~I~teHLLlaLl~~ 115 (468)
T 3pxg_A 54 GLGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIEL------------SMDEARKLGHSYVGTEHILLGLIRE 115 (468)
T ss_dssp TCCHHHHHHHHHTTSCCCCTTCSSCEECHHHHHHHHH------------HHHHHHTTTCSSBCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhcccCCCCCCCCCCHHHHHHHHH------------HHHHHHHcCCCeecHHHHHHHHHhc
Confidence 3445556666666665432 1235689998888876 7777888899999999999998543
No 91
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=55.08 E-value=45 Score=24.28 Aligned_cols=53 Identities=8% Similarity=0.144 Sum_probs=37.5
Q ss_pred ccccHHHHHHHHHHHH---HHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcCch
Q psy13691 31 INVSKDVRLAAGKAAS---LFILHLTTEALSIANEKNRKTLSGVDVIEGVKQIGFE 83 (103)
Q Consensus 31 ~~iskda~~~l~~~~~---~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~ 83 (103)
+.++.++...|.+.+. -.+.-+...+.+.|...++..|+.+++..|++.++.+
T Consensus 198 ~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~~~ 253 (334)
T 1in4_A 198 VEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNID 253 (334)
T ss_dssp CCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHTCC
T ss_pred CCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCC
Confidence 5688888877766432 2333444556666766778899999999999987654
No 92
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=54.87 E-value=31 Score=22.81 Aligned_cols=46 Identities=13% Similarity=0.005 Sum_probs=29.4
Q ss_pred ccccHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCCCCcChhhHHHhhh
Q psy13691 31 INVSKDVRLAAGKAAS----LFILHLTTEALSIANEKNRKTLSGVDVIEGVK 78 (103)
Q Consensus 31 ~~iskda~~~l~~~~~----~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~ 78 (103)
..++.++...+.+.+. .....| ..+...|..++ ++|+.+||..+++
T Consensus 192 ~~~~~~~~~~l~~~~~g~~r~l~~~l-~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 192 LQLPEDVGRFLLNRMARDLRTLFDVL-DRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp CCCCHHHHHHHHHHTTTCHHHHHHHH-HHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHccCCHHHHHHHH-HHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 5788888888877654 223322 23434444444 5699999998875
No 93
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.73 E-value=14 Score=28.88 Aligned_cols=32 Identities=22% Similarity=0.065 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCcChhhHHHhhhh
Q psy13691 48 FILHLTTEALSIANEKNRKTLSGVDVIEGVKQ 79 (103)
Q Consensus 48 Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~ 79 (103)
=|.-|..+|...|..++|..|+.+|+..|++.
T Consensus 357 Di~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 357 DVKGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp HHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 46677788888898999999999999999975
No 94
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=54.52 E-value=29 Score=26.80 Aligned_cols=37 Identities=8% Similarity=0.066 Sum_probs=31.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhc
Q psy13691 32 NVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQI 80 (103)
Q Consensus 32 ~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~l 80 (103)
+++..+..+|.. |...|...+...|.++|++.||=.-
T Consensus 5 ~ft~~a~~al~~------------A~~~A~~~~h~~v~~eHLLlaLl~~ 41 (468)
T 3pxg_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVRE 41 (468)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHS
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhc
Confidence 688888888876 7778999999999999999998544
No 95
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.56 E-value=12 Score=29.49 Aligned_cols=33 Identities=24% Similarity=0.351 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhc
Q psy13691 48 FILHLTTEALSIANEKNRKTLSGVDVIEGVKQI 80 (103)
Q Consensus 48 Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~l 80 (103)
=|..|..+|...|...++..|+.+|+..|++..
T Consensus 390 Di~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 390 QLKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp HHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 356777788888888899999999999999754
No 96
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.42 E-value=12 Score=29.91 Aligned_cols=32 Identities=25% Similarity=0.302 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhCCCCCcChhhHHHhhhhc
Q psy13691 49 ILHLTTEALSIANEKNRKTLSGVDVIEGVKQI 80 (103)
Q Consensus 49 i~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~l 80 (103)
|.-|..+|...|..++|+.|+.+|+..|++..
T Consensus 419 I~~l~~eAa~~Air~~~~~it~~Df~~Al~kV 450 (467)
T 4b4t_H 419 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKV 450 (467)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 56677888888888899999999999999854
No 97
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=50.18 E-value=49 Score=27.02 Aligned_cols=60 Identities=12% Similarity=0.159 Sum_probs=42.8
Q ss_pred CCcHHHHHHHHHhhCCCCC--cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhc
Q psy13691 9 NLPSAIIQRLIKEALPKDA--EGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQI 80 (103)
Q Consensus 9 ~LP~a~V~ri~K~~l~~~~--~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~l 80 (103)
.+....+.+-+...++..+ .+...+|..+..+|.. |...|..-|...|+.+|++.||=.-
T Consensus 54 gvd~~~l~~~l~~~l~~~~~~~~~~~~s~~~~~vl~~------------A~~~A~~~~~~~I~~ehlLlall~~ 115 (758)
T 3pxi_A 54 GLGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIEL------------SMDEARKLGHSYVGTEHILLGLIRE 115 (758)
T ss_dssp TCCHHHHHHHHHTTSCCCCTTCSSCEECHHHHHHHHH------------HHHHHHTTTCSSBCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhccCCCCCCCCCCCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhc
Confidence 3445556666666665442 1345788998888876 7777888899999999999998543
No 98
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=49.99 E-value=70 Score=23.14 Aligned_cols=67 Identities=13% Similarity=0.005 Sum_probs=47.5
Q ss_pred CcHHHHHHHHHhh----CCCCCcccccccHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhCCCCCcChhhHHHh
Q psy13691 10 LPSAIIQRLIKEA----LPKDAEGKINVSKDVRLAAGKAAS---------LFILHLTTEALSIANEKNRKTLSGVDVIEG 76 (103)
Q Consensus 10 LP~a~V~ri~K~~----l~~~~~~~~~iskda~~~l~~~~~---------~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~A 76 (103)
|+..-+..+++.. .++ ..++.++...+.+.+. -++..+...|...+...++.+|+.+|+..+
T Consensus 215 l~~~e~~~ll~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~ 289 (412)
T 1w5s_A 215 YKSRELYTILEQRAELGLRD-----TVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKA 289 (412)
T ss_dssp CCHHHHHHHHHHHHHHHBCT-----TSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCC-----CCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 4455566666433 222 3588888888887776 367777777888888888999999999888
Q ss_pred hhhcC
Q psy13691 77 VKQIG 81 (103)
Q Consensus 77 l~~lg 81 (103)
+....
T Consensus 290 ~~~~~ 294 (412)
T 1w5s_A 290 VSENE 294 (412)
T ss_dssp HHHC-
T ss_pred HHHHh
Confidence 87653
No 99
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=49.43 E-value=61 Score=25.06 Aligned_cols=72 Identities=14% Similarity=0.167 Sum_probs=45.3
Q ss_pred CCcHHHHHHHHHhhCCCCC----cccccccHHHHHHHHHHHH----HHHHHHHHHHHHHHHhC--CCCCcChhhHHHhhh
Q psy13691 9 NLPSAIIQRLIKEALPKDA----EGKINVSKDVRLAAGKAAS----LFILHLTTEALSIANEK--NRKTLSGVDVIEGVK 78 (103)
Q Consensus 9 ~LP~a~V~ri~K~~l~~~~----~~~~~iskda~~~l~~~~~----~Fi~~lt~~A~~~a~~~--~RkTI~~eDV~~Al~ 78 (103)
.+|..-+..+++..+.... .....++.++...|.+.+. ..++.|- .|...|... ++.+|+.+||..++.
T Consensus 164 ~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le-~a~~~a~~~~~~~~~It~e~v~~~l~ 242 (447)
T 3pvs_A 164 SLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLE-MMADMAEVDDSGKRVLKPELLTEIAG 242 (447)
T ss_dssp CCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHH-HHHHHSCBCTTSCEECCHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHH-HHHHhcccccCCCCccCHHHHHHHHh
Confidence 3566667777776654310 0236799999999988753 2233222 233344322 667899999999998
Q ss_pred hcC
Q psy13691 79 QIG 81 (103)
Q Consensus 79 ~lg 81 (103)
...
T Consensus 243 ~~~ 245 (447)
T 3pvs_A 243 ERS 245 (447)
T ss_dssp CCC
T ss_pred hhh
Confidence 653
No 100
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=48.45 E-value=14 Score=22.65 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=19.8
Q ss_pred CcChhhHHHhhhhc-CchHHHHHHH
Q psy13691 67 TLSGVDVIEGVKQI-GFEVIIEILG 90 (103)
Q Consensus 67 TI~~eDV~~Al~~l-gf~~~~~~l~ 90 (103)
.=+.+||..-|+.+ ||++|.+...
T Consensus 16 ~Ws~edV~~wL~~l~gl~~y~~~F~ 40 (89)
T 1kw4_A 16 SWSVDDVSNFIRELPGCQDYVDDFI 40 (89)
T ss_dssp GCCHHHHHHHHHTSTTCGGGHHHHH
T ss_pred hCCHHHHHHHHHHCcChHHHHHHHH
Confidence 35789999999999 9999886544
No 101
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}
Probab=46.39 E-value=31 Score=18.03 Aligned_cols=22 Identities=0% Similarity=-0.061 Sum_probs=11.4
Q ss_pred HHHHhCCCCCcChhhHHHhhhh
Q psy13691 58 SIANEKNRKTLSGVDVIEGVKQ 79 (103)
Q Consensus 58 ~~a~~~~RkTI~~eDV~~Al~~ 79 (103)
..+-.++...|+.++....+..
T Consensus 43 ~~~D~~~~g~i~~~ef~~~~~~ 64 (66)
T 3li6_A 43 KSIDADGNGEIDQNEFAKFYGS 64 (66)
T ss_dssp HHHCTTCSSSCCHHHHHHHHTC
T ss_pred HHHCCCCCCCCCHHHHHHHHHh
Confidence 3343445555666666555543
No 102
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.19 E-value=23 Score=27.64 Aligned_cols=31 Identities=29% Similarity=0.180 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhCCCCCcChhhHHHhhhh
Q psy13691 49 ILHLTTEALSIANEKNRKTLSGVDVIEGVKQ 79 (103)
Q Consensus 49 i~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~ 79 (103)
|.-|..+|...|...+|..|+.+|+..|+..
T Consensus 383 i~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 383 IAAIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 6777888888899999999999999999864
No 103
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=46.05 E-value=21 Score=24.60 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhCCCCCcChhhHHHhhh
Q psy13691 50 LHLTTEALSIANEKNRKTLSGVDVIEGVK 78 (103)
Q Consensus 50 ~~lt~~A~~~a~~~~RkTI~~eDV~~Al~ 78 (103)
.-+..+|...|...++.+|+.+|+..|++
T Consensus 226 ~~~~~~a~~~a~~~~~~~I~~~dl~~a~~ 254 (254)
T 1ixz_A 226 ENLLNEAALLAAREGRRKITMKDLEEAAS 254 (254)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCCcCHHHHHHHhC
Confidence 34445666677778889999999998863
No 104
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=44.58 E-value=33 Score=17.84 Aligned_cols=25 Identities=12% Similarity=-0.109 Sum_probs=15.5
Q ss_pred HHHhCCCCCcChhhHHHhhhhcCch
Q psy13691 59 IANEKNRKTLSGVDVIEGVKQIGFE 83 (103)
Q Consensus 59 ~a~~~~RkTI~~eDV~~Al~~lgf~ 83 (103)
..-.++.-.|+.+++..++..+|..
T Consensus 9 ~~D~d~~G~i~~~el~~~l~~~~~~ 33 (67)
T 1tiz_A 9 KFDKNKDGKLSLDEFREVALAFSPY 33 (67)
T ss_dssp HHCTTSSSCEEHHHHHHHHHHTCTT
T ss_pred HHCCCCCCcCcHHHHHHHHHHhCCC
Confidence 3334555567777777777766654
No 105
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=43.51 E-value=51 Score=26.94 Aligned_cols=37 Identities=8% Similarity=0.066 Sum_probs=31.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhc
Q psy13691 32 NVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQI 80 (103)
Q Consensus 32 ~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~l 80 (103)
+++..++.+|.. |.+.|...+...|+++|++.||=.-
T Consensus 5 ~~t~~a~~~l~~------------A~~~A~~~~h~~i~~eHlLlaLl~~ 41 (758)
T 3pxi_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVRE 41 (758)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHS
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhc
Confidence 688888888876 7778999999999999999998543
No 106
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=42.89 E-value=25 Score=24.71 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhCCCCCcChhhHHHhhh
Q psy13691 51 HLTTEALSIANEKNRKTLSGVDVIEGVK 78 (103)
Q Consensus 51 ~lt~~A~~~a~~~~RkTI~~eDV~~Al~ 78 (103)
-+..+|...|...++.+|+.+|+..|++
T Consensus 251 ~l~~~a~~~a~~~~~~~I~~~dl~~a~~ 278 (278)
T 1iy2_A 251 NLLNEAALLAAREGRRKITMKDLEEAAS 278 (278)
T ss_dssp HHHHHHHHHHHHTTCCSBCHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHhC
Confidence 4445666677778888999999998863
No 107
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=42.24 E-value=7.5 Score=24.48 Aligned_cols=23 Identities=17% Similarity=-0.003 Sum_probs=19.3
Q ss_pred CcChhhHHHhhhhcCchHHHHHH
Q psy13691 67 TLSGVDVIEGVKQIGFEVIIEIL 89 (103)
Q Consensus 67 TI~~eDV~~Al~~lgf~~~~~~l 89 (103)
.=+++||..-|+.+||.+|++..
T Consensus 19 ~Ws~edV~~WL~~~Gl~~Y~~~F 41 (97)
T 2d8c_A 19 YWSPKKVADWLLENAMPEYCEPL 41 (97)
T ss_dssp SCCTTHHHHHHHHTTCTTTTTTT
T ss_pred hCCHHHHHHHHHHcCCHHHHHHH
Confidence 35889999999999999987543
No 108
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=42.19 E-value=9.8 Score=26.10 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhc
Q psy13691 48 FILHLTTEALSIANEKNRKTLSGVDVIEGVKQI 80 (103)
Q Consensus 48 Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~l 80 (103)
-|.-+..+|...|...++.+|+.+|+..|+++.
T Consensus 217 ~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~ 249 (262)
T 2qz4_A 217 DIANICNEAALHAAREGHTSVHTLNFEYAVERV 249 (262)
T ss_dssp HHHHHHHHHHTC--------CCBCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 344555667667777888999999999999865
No 109
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=41.31 E-value=32 Score=20.07 Aligned_cols=80 Identities=11% Similarity=-0.019 Sum_probs=44.7
Q ss_pred CCcHHHHHHHHHhhCCCCCcccccccHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhc---CchH
Q psy13691 9 NLPSAIIQRLIKEALPKDAEGKINVSKD-VRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQI---GFEV 84 (103)
Q Consensus 9 ~LP~a~V~ri~K~~l~~~~~~~~~iskd-a~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~l---gf~~ 84 (103)
.++..-|.++++..=.+ -.|+-+ ...++... ..-. .-...+....-.++.-.|+.+++..+|..+ |..-
T Consensus 5 ~~s~~ei~~~~~~~d~~-----g~i~~~eF~~~~~~~-~~~~-~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~g~~~ 77 (109)
T 5pal_A 5 VLKADDINKAISAFKDP-----GTFDYKRFFHLVGLK-GKTD-AQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDL 77 (109)
T ss_dssp TSCHHHHHHHHHHTCST-----TCCCHHHHHHHHTCT-TCCH-HHHHHHHHHHCTTCSSEECHHHHHTHHHHHCTTCCCC
T ss_pred cCCHHHHHHHHHHhCCC-----CcCcHHHHHHHHhhc-cCcH-HHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHcCCCC
Confidence 36778888888886332 244432 22221100 0000 011345566666788899999999999988 6553
Q ss_pred HHHHHHHHHHH
Q psy13691 85 IIEILGKSYNA 95 (103)
Q Consensus 85 ~~~~l~~~l~~ 95 (103)
--+.++..++.
T Consensus 78 ~~~~~~~~~~~ 88 (109)
T 5pal_A 78 NDTETKALLAA 88 (109)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 33444444443
No 110
>1ygt_A Cytoplasmic dynein light chain; domain swapping, protein transport; 1.70A {Drosophila melanogaster} PDB: 2pg1_E 3fm7_A
Probab=41.28 E-value=8.2 Score=24.51 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=15.8
Q ss_pred CCCCccCCCCcHHHHHHHHHhhCCC
Q psy13691 1 MAESLDDLNLPSAIIQRLIKEALPK 25 (103)
Q Consensus 1 m~~~~~d~~LP~a~V~ri~K~~l~~ 25 (103)
|..+.++..+|...|.+||++++..
T Consensus 1 ~~~~~~~~~F~~~~v~~ii~~~l~~ 25 (111)
T 1ygt_A 1 MDDSREESQFIVDDVSKTIKEAIET 25 (111)
T ss_dssp -------CCCCCCHHHHHHHHHHHH
T ss_pred CCCcccCCCCCHHHHHHHHHHHHHH
Confidence 6677788899999999999998753
No 111
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=41.09 E-value=26 Score=29.23 Aligned_cols=35 Identities=11% Similarity=0.076 Sum_probs=30.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhh
Q psy13691 32 NVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVK 78 (103)
Q Consensus 32 ~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~ 78 (103)
+++..+..+|.. |...|...+...|+++|++.||=
T Consensus 5 ~~t~~a~~al~~------------A~~~A~~~~h~~i~~eHLLlaLl 39 (854)
T 1qvr_A 5 RWTQAAREALAQ------------AQVLAQRMKHQAIDLPHLWAVLL 39 (854)
T ss_dssp CSCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHC
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHH
Confidence 678888888876 77789999999999999999983
No 112
>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=40.22 E-value=22 Score=21.60 Aligned_cols=23 Identities=13% Similarity=0.187 Sum_probs=18.9
Q ss_pred CcChhhHHHhhhhcCc--hHHHHHH
Q psy13691 67 TLSGVDVIEGVKQIGF--EVIIEIL 89 (103)
Q Consensus 67 TI~~eDV~~Al~~lgf--~~~~~~l 89 (103)
.=+++||..-|+.+|| ++|.+..
T Consensus 19 ~Wt~~dV~~WL~~~gl~~~~Y~~~F 43 (91)
T 1v85_A 19 KWTTEEVVLWLEQLGPWASLYRDRF 43 (91)
T ss_dssp GCCHHHHHHHHHHHCGGGHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4578999999999999 8887544
No 113
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=40.20 E-value=62 Score=23.15 Aligned_cols=68 Identities=12% Similarity=0.017 Sum_probs=39.9
Q ss_pred CCcHHHHHHHHHhhCCC-CCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcC
Q psy13691 9 NLPSAIIQRLIKEALPK-DAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQIG 81 (103)
Q Consensus 9 ~LP~a~V~ri~K~~l~~-~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lg 81 (103)
.++...+..+++..+.. + ..++.++...+.+.+.--...+-......+.. +..+|+.+||..++....
T Consensus 177 ~l~~~~~~~~l~~~~~~~~----~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~-~~~~i~~~~v~~~~~~~~ 245 (373)
T 1jr3_A 177 ALDVEQIRHQLEHILNEEH----IAHEPRALQLLARAAEGSLRDALSLTDQAIAS-GDGQVSTQAVSAMLGTLD 245 (373)
T ss_dssp CCCHHHHHHHHHHHHHHHT----CCBCHHHHHHHHHHSSSCHHHHHHHHHHHHHH-TTTCBCHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHh-cCCcccHHHHHHHhCCCC
Confidence 34556666666654422 2 57889988888776554444333333322222 245799999887776543
No 114
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=39.30 E-value=43 Score=18.04 Aligned_cols=20 Identities=10% Similarity=0.345 Sum_probs=10.6
Q ss_pred CCCCCcChhhHHHhhhhcCc
Q psy13691 63 KNRKTLSGVDVIEGVKQIGF 82 (103)
Q Consensus 63 ~~RkTI~~eDV~~Al~~lgf 82 (103)
++.-.|+.+++..+|..+|+
T Consensus 19 d~~G~i~~~el~~~l~~~g~ 38 (77)
T 2joj_A 19 NKTGSIDYHELKVAMRALGF 38 (77)
T ss_dssp SSSSEEEHHHHHHHHHHHTC
T ss_pred CCCCCCcHHHHHHHHHHhCC
Confidence 34445555555555555554
No 115
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=39.26 E-value=55 Score=23.00 Aligned_cols=70 Identities=9% Similarity=0.146 Sum_probs=44.1
Q ss_pred CcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHH---HHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcCc
Q psy13691 10 LPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLF---ILHLTTEALSIANEKNRKTLSGVDVIEGVKQIGF 82 (103)
Q Consensus 10 LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~F---i~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lgf 82 (103)
+|..-+..+++..+... ...++.++...+.+.+.-. +..+...+...|...+...|+.+|+..+++.++.
T Consensus 168 ~~~~e~~~~l~~~~~~~---~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~ 240 (324)
T 1hqc_A 168 YTPEELAQGVMRDARLL---GVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGL 240 (324)
T ss_dssp CCHHHHHHHHHHHHHTT---TCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcc
Confidence 44555666666554321 1578999988888775322 2333334444455556788999999999887654
No 116
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=38.77 E-value=81 Score=20.66 Aligned_cols=69 Identities=23% Similarity=0.344 Sum_probs=36.7
Q ss_pred CCCcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcCch
Q psy13691 8 LNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLF-ILHLTTEALSIANEKNRKTLSGVDVIEGVKQIGFE 83 (103)
Q Consensus 8 ~~LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~F-i~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~ 83 (103)
..|....+.|+-+=. .. .++.+.+...+....+.- +..| .++....-.++.-+|+.+++..+|..+|+.
T Consensus 20 ~~l~~~~~~~l~~f~--~~----~~lk~~~l~~i~~~l~~~e~~~l-~~~F~~~D~d~~G~Is~~El~~~l~~~g~~ 89 (197)
T 3pm8_A 20 VELSSTLLKNLKNFK--KE----NELKKIALTIIAKHLCDVEINNL-RNIFIALDVDNSGTLSSQEILDGLKKIGYQ 89 (197)
T ss_dssp CCCCTTHHHHHHHTT--TS----CHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHCTTCSSEECHHHHHHHHHHHC--
T ss_pred CCCCHHHHHHHHHHH--Hc----cHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHCCCCCCcCCHHHHHHHHHHhCCC
Confidence 345555555554332 11 245555544444322211 1111 234444446678899999999999999875
No 117
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=37.98 E-value=57 Score=18.91 Aligned_cols=28 Identities=11% Similarity=0.273 Sum_probs=20.7
Q ss_pred HHHHHHhCCCCCcChhhHHHhhhhcCch
Q psy13691 56 ALSIANEKNRKTLSGVDVIEGVKQIGFE 83 (103)
Q Consensus 56 A~~~a~~~~RkTI~~eDV~~Al~~lgf~ 83 (103)
+....-.++.-.|+.+++..+|..+|..
T Consensus 34 ~F~~~D~d~~G~I~~~El~~~l~~~g~~ 61 (94)
T 2kz2_A 34 AFRVEDKDGNGYISAAELRHVMTNLGEK 61 (94)
T ss_dssp HHHHHCTTCCSCBCHHHHHHHHHHHTCC
T ss_pred HHHHHCCCCcCcCCHHHHHHHHHHhCCC
Confidence 3444456677789999999999888864
No 118
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=37.27 E-value=1.6e+02 Score=23.83 Aligned_cols=68 Identities=10% Similarity=0.029 Sum_probs=42.6
Q ss_pred CCcHHHHHHHHHhhC--CCCCcccccccHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHhCCC
Q psy13691 9 NLPSAIIQRLIKEAL--PKDAEGKINVSKDVRLAAGKAASLF---------------------ILHLTTEALSIANEKNR 65 (103)
Q Consensus 9 ~LP~a~V~ri~K~~l--~~~~~~~~~iskda~~~l~~~~~~F---------------------i~~lt~~A~~~a~~~~R 65 (103)
.++...+.+.+.-+= .-. ..+++++.+.|.+....- +..|-..|.-.|.-.+|
T Consensus 393 ~ls~e~L~~yi~~ar~~~~~----p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR 468 (506)
T 3f8t_A 393 VPSYTLLRRYLLYAIREHPA----PELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLS 468 (506)
T ss_dssp -CCHHHHHHHHHHHHHHCSC----CEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHhcCCC----ceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCc
Confidence 355555555554331 002 468888887776543221 12344556667889999
Q ss_pred CCcChhhHHHhhhhc
Q psy13691 66 KTLSGVDVIEGVKQI 80 (103)
Q Consensus 66 kTI~~eDV~~Al~~l 80 (103)
..++++||..|++-+
T Consensus 469 ~~V~~eDV~~Ai~L~ 483 (506)
T 3f8t_A 469 DDVEPEDVDIAAELV 483 (506)
T ss_dssp SEECHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999998644
No 119
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=37.16 E-value=30 Score=28.16 Aligned_cols=33 Identities=12% Similarity=0.259 Sum_probs=26.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhh
Q psy13691 33 VSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGV 77 (103)
Q Consensus 33 iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al 77 (103)
++..+..+|.. |...|...+...|+++|++.||
T Consensus 2 ~t~~a~~~l~~------------A~~~A~~~~h~~i~~eHLLlaL 34 (758)
T 1r6b_X 2 LNQELELSLNM------------AFARAREHRHEFMTVEHLLLAL 34 (758)
T ss_dssp BCHHHHHHHHH------------HHHHHHHTTBSEECHHHHHHHH
T ss_pred CCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHH
Confidence 45555655554 7788999999999999999997
No 120
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=36.93 E-value=75 Score=25.77 Aligned_cols=37 Identities=11% Similarity=0.194 Sum_probs=29.0
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhh
Q psy13691 31 INVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQ 79 (103)
Q Consensus 31 ~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~ 79 (103)
..+|..+..+|++ |...+...|..-|+.+|++.||=.
T Consensus 78 ~~~s~~~~~vl~~------------A~~~a~~~~~~~I~~ehlLlall~ 114 (758)
T 1r6b_X 78 TQPTLSFQRVLQR------------AVFHVQSSGRNEVTGANVLVAIFS 114 (758)
T ss_dssp CEECHHHHHHHHH------------HHHHHHHHTCSSBCHHHHHHHHTT
T ss_pred CCcCHHHHHHHHH------------HHHHHHHcCCCEeeHHHHHHHHhc
Confidence 5688888888776 566676678889999999988753
No 121
>1lng_A SRP19, signal recognition particle 19 kDa protein; protein-RNA complex, signaling protein/RNA complex; 2.30A {Methanocaldococcus jannaschii} SCOP: d.201.1.1 PDB: 2v3c_A 3ndb_A 1l9a_A*
Probab=36.91 E-value=18 Score=22.41 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=20.7
Q ss_pred HHhCCCCC--------cChhhHHHhhhhcCchHHH
Q psy13691 60 ANEKNRKT--------LSGVDVIEGVKQIGFEVII 86 (103)
Q Consensus 60 a~~~~RkT--------I~~eDV~~Al~~lgf~~~~ 86 (103)
+..+||+. -+.++|..|++.|||.-.+
T Consensus 13 tr~eGRrv~k~~aV~~P~~~EI~~a~~~lgl~~~~ 47 (87)
T 1lng_A 13 SRREGRKVPEELAIEKPSLKDIEKALKKLGLEPKI 47 (87)
T ss_dssp CTTTTCCSCTTTCBSSCCHHHHHHHHHHTTCCCEE
T ss_pred ChhhcCccCHHHhccCCCHHHHHHHHHHcCCCeEE
Confidence 34566664 6789999999999998544
No 122
>2ns0_A Hypothetical protein; rhodococcus structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} SCOP: a.4.5.76
Probab=35.98 E-value=77 Score=19.58 Aligned_cols=34 Identities=12% Similarity=0.197 Sum_probs=27.3
Q ss_pred hCCCCCcChhhHHHhhhhcCchHHHHHHHHHHHH
Q psy13691 62 EKNRKTLSGVDVIEGVKQIGFEVIIEILGKSYNA 95 (103)
Q Consensus 62 ~~~RkTI~~eDV~~Al~~lgf~~~~~~l~~~l~~ 95 (103)
..--|||.|.||..||..-++-.+.+++....-.
T Consensus 19 R~~~kTicPSEvARal~~~~Wr~lM~~vR~~A~~ 52 (85)
T 2ns0_A 19 RADSASICPSDVARAVAPDDWRPLMEPVREAAGR 52 (85)
T ss_dssp SCTTCCBCHHHHHHHHCTTSCGGGHHHHHHHHHH
T ss_pred hCCCCCcCHHHHHHHhCchhHHHHhHHHHHHHHH
Confidence 3445999999999999887888888888776543
No 123
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=35.02 E-value=67 Score=18.58 Aligned_cols=79 Identities=8% Similarity=-0.030 Sum_probs=43.9
Q ss_pred CCcHHHHHHHHHhhCCCCCcccccccHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhc---CchH
Q psy13691 9 NLPSAIIQRLIKEALPKDAEGKINVSKD-VRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQI---GFEV 84 (103)
Q Consensus 9 ~LP~a~V~ri~K~~l~~~~~~~~~iskd-a~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~l---gf~~ 84 (103)
.++..-|.++++..=++ -.|+-+ ...++... ..- .--...+....-.++.-.|+.+++..+|..+ |..-
T Consensus 6 ~~~~~ei~~~~~~~D~~-----g~i~~~eF~~~~~~~-~~~-~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~ 78 (109)
T 3fs7_A 6 ILSAKDIESALSSCQAA-----DSFNYKSFFSTVGLS-SKT-PDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVL 78 (109)
T ss_dssp TSCHHHHHHHHHHTCST-----TCCCHHHHHHHHTCT-TCC-HHHHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTTSCCC
T ss_pred cCCHHHHHHHHHhcCCC-----CcCcHHHHHHHHhcC-CCc-HHHHHHHHHHHCCCCCCeEeHHHHHHHHHHHhcccccC
Confidence 57788899999886322 244433 22222100 000 0012345555666778899999999999998 5443
Q ss_pred HHHHHHHHHH
Q psy13691 85 IIEILGKSYN 94 (103)
Q Consensus 85 ~~~~l~~~l~ 94 (103)
--..+...++
T Consensus 79 ~~~~~~~~~~ 88 (109)
T 3fs7_A 79 TSAETKAFLA 88 (109)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 3334444443
No 124
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=35.01 E-value=39 Score=24.05 Aligned_cols=68 Identities=13% Similarity=-0.002 Sum_probs=40.3
Q ss_pred CCcHHHHHHHHHhhCC-CCCcccccccHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCC-CCCcChhhHHHhhhhcC
Q psy13691 9 NLPSAIIQRLIKEALP-KDAEGKINVSKDVRLAAGKAAS----LFILHLTTEALSIANEKN-RKTLSGVDVIEGVKQIG 81 (103)
Q Consensus 9 ~LP~a~V~ri~K~~l~-~~~~~~~~iskda~~~l~~~~~----~Fi~~lt~~A~~~a~~~~-RkTI~~eDV~~Al~~lg 81 (103)
.++...+..+++..+. .+ +.++.++...+.+.+. ..++.+-. +...+...+ ++.|+.+||..++....
T Consensus 191 ~~~~~~~~~~l~~~~~~~~----~~i~~~~l~~l~~~~~G~~r~~~~~l~~-~~~~~~~~~~~~~It~~~v~~~~~~~~ 264 (353)
T 1sxj_D 191 ALDASNAIDRLRFISEQEN----VKCDDGVLERILDISAGDLRRGITLLQS-ASKGAQYLGDGKNITSTQVEELAGVVP 264 (353)
T ss_dssp CCCHHHHHHHHHHHHHTTT----CCCCHHHHHHHHHHTSSCHHHHHHHHHH-THHHHHHHCSCCCCCHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHHhC----CCCCHHHHHHHHHHcCCCHHHHHHHHHH-HHHhcCCCccCccccHHHHHHHhCCCC
Confidence 3455556666655432 23 6789999888887643 33333333 222333333 33899999999887554
No 125
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=34.37 E-value=21 Score=19.13 Aligned_cols=18 Identities=11% Similarity=0.259 Sum_probs=15.2
Q ss_pred CCcChhhHHHhhhhcCch
Q psy13691 66 KTLSGVDVIEGVKQIGFE 83 (103)
Q Consensus 66 kTI~~eDV~~Al~~lgf~ 83 (103)
..++.+++..+++.+||.
T Consensus 48 ~~~~~~~i~~~i~~~Gy~ 65 (69)
T 4a4j_A 48 GETTPQILTDAVERAGYH 65 (69)
T ss_dssp TTCCHHHHHHHHHHTTCE
T ss_pred CCCCHHHHHHHHHHcCCc
Confidence 457888999999999985
No 126
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.29 E-value=19 Score=22.38 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=17.5
Q ss_pred cChhhHHHhhhhcCchH--HHHHH
Q psy13691 68 LSGVDVIEGVKQIGFEV--IIEIL 89 (103)
Q Consensus 68 I~~eDV~~Al~~lgf~~--~~~~l 89 (103)
=+++||..-|+.+||++ |.+..
T Consensus 30 Ws~~~V~~WL~~lgl~~~~y~~~F 53 (103)
T 2e8o_A 30 WGPEQVCSFLRRGGFEEPVLLKNI 53 (103)
T ss_dssp CHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred CCHHHHHHHHHHcCCChHHHHHHH
Confidence 46789999999999987 66543
No 127
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Probab=34.24 E-value=31 Score=26.46 Aligned_cols=63 Identities=8% Similarity=0.007 Sum_probs=43.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc-ChhhHHHhhhhcCchHHHHHHHHHHHHHH
Q psy13691 33 VSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTL-SGVDVIEGVKQIGFEVIIEILGKSYNAAV 97 (103)
Q Consensus 33 iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI-~~eDV~~Al~~lgf~~~~~~l~~~l~~~k 97 (103)
++.|-.+-+...-+..-.|+.......-... + .. .-+..++-|+.+|+++|++..+..+++|+
T Consensus 471 ~t~~e~~~~~~~~~~i~~~~~~~~~~~i~g~-~-~~~~wd~y~~~l~~~g~~~~~~~~q~~yd~~~ 534 (535)
T 3omb_A 471 MDPSDATKLNTNNAEIFNTTMQKTATWMSKG-G-IDEEWDAYCKQLDSIGLQESTKIWQKWYDTYT 534 (535)
T ss_dssp SCHHHHHHHHHHHHHHTTTHHHHHHHHHHHC-C-HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhHHHHHHHHHHHHHhCC-C-cHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhh
Confidence 6666666666555555555554444443333 2 22 25678899999999999999999999996
No 128
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=34.10 E-value=92 Score=20.04 Aligned_cols=35 Identities=6% Similarity=0.244 Sum_probs=28.1
Q ss_pred HHhCCCCCcChhhHHHhhhhcCchHHHHHHHHHHHH
Q psy13691 60 ANEKNRKTLSGVDVIEGVKQIGFEVIIEILGKSYNA 95 (103)
Q Consensus 60 a~~~~RkTI~~eDV~~Al~~lgf~~~~~~l~~~l~~ 95 (103)
....|+ .-+.+.++.||..+|..+..+.++..++.
T Consensus 57 ~~r~G~-~ATv~~L~~AL~~i~~~diAe~Ie~~l~~ 91 (122)
T 3ezq_B 57 KNTEKE-NATVAHLVGALRSCQMNLVADLVQEVQQA 91 (122)
T ss_dssp HHHCTT-TCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhCC-CchHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344553 34789999999999999999999888764
No 129
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}
Probab=34.09 E-value=27 Score=20.24 Aligned_cols=23 Identities=9% Similarity=0.173 Sum_probs=18.1
Q ss_pred cChhhHHHhhhhc--CchHHHHHHH
Q psy13691 68 LSGVDVIEGVKQI--GFEVIIEILG 90 (103)
Q Consensus 68 I~~eDV~~Al~~l--gf~~~~~~l~ 90 (103)
=+++||..-|+.+ ||++|.+...
T Consensus 6 Wt~~~V~~WL~~~~~gl~~y~~~F~ 30 (78)
T 3bs7_A 6 WTVSDVLKWYRRHCGEYTQYEQLFA 30 (78)
T ss_dssp CCHHHHHHHHHHHSGGGGGGHHHHH
T ss_pred CCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3688999999987 8888876543
No 130
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=33.52 E-value=19 Score=20.74 Aligned_cols=14 Identities=14% Similarity=0.463 Sum_probs=12.6
Q ss_pred hhHHHhhhhcCchH
Q psy13691 71 VDVIEGVKQIGFEV 84 (103)
Q Consensus 71 eDV~~Al~~lgf~~ 84 (103)
+|++.||..|||..
T Consensus 18 ~ea~~AL~aLGY~~ 31 (62)
T 1ixs_A 18 EEAVMALAALGFKE 31 (62)
T ss_dssp HHHHHHHHHTTCCH
T ss_pred HHHHHHHHHcCCCH
Confidence 68999999999985
No 131
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=33.45 E-value=38 Score=19.42 Aligned_cols=32 Identities=25% Similarity=0.262 Sum_probs=24.1
Q ss_pred CCcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHH
Q psy13691 9 NLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLF 48 (103)
Q Consensus 9 ~LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~F 48 (103)
.+..++|.|++... -.||.+.+.-+.+++.++
T Consensus 20 GVS~sTVSr~ln~~--------~~vs~~t~~rV~~~a~~l 51 (67)
T 2l8n_A 20 KVSTATVSRALMNP--------DKVSQATRNRVEKAAREV 51 (67)
T ss_dssp TCCHHHHHHTTTCC--------CCSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHcCC--------CCCCHHHHHHHHHHHHHh
Confidence 56788888877542 358999999988887765
No 132
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=33.37 E-value=27 Score=21.13 Aligned_cols=41 Identities=10% Similarity=0.268 Sum_probs=31.8
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcCch
Q psy13691 31 INVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQIGFE 83 (103)
Q Consensus 31 ~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~ 83 (103)
..++.+-..-|.+ |....-.+|.-+|+.+++..+|+.+|+.
T Consensus 28 ~~l~~~~~~el~~------------~F~~~D~d~~G~I~~~El~~~l~~lg~~ 68 (100)
T 2lv7_A 28 VDIPEDELEEIRE------------AFKVFDRDGNGFISKQELGTAMRSLGYM 68 (100)
T ss_dssp CCCCGGGHHHHHH------------HHHHTCSSCSSCBCHHHHHHHHHHHTCC
T ss_pred ccCCHHHHHHHHH------------HHHHHcCCCCCcCCHHHHHHHHHHhCCC
Confidence 4577776665544 6666677888899999999999999875
No 133
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=32.99 E-value=47 Score=23.71 Aligned_cols=69 Identities=13% Similarity=0.203 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcCch
Q psy13691 12 SAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASL---FILHLTTEALSIANEKNRKTLSGVDVIEGVKQIGFE 83 (103)
Q Consensus 12 ~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~---Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~ 83 (103)
..-+..+++..+... ...++.++...+.+.+.- .+..+...+...|...++..|+.+|+..++..++++
T Consensus 186 ~~e~~~il~~~~~~~---~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~ 257 (338)
T 3pfi_A 186 DSELALILQKAALKL---NKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVN 257 (338)
T ss_dssp HHHHHHHHHHHHHHT---TCEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHhCCc
Confidence 444555555443321 156889998888875433 233334455566777788899999999999877654
No 134
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=32.98 E-value=88 Score=21.59 Aligned_cols=51 Identities=12% Similarity=0.164 Sum_probs=31.0
Q ss_pred ccccHHHHHHHHHHHHH------------HHHHHHH---H-HHHHHHhCCCC-CcChhhHHHhhhhcC
Q psy13691 31 INVSKDVRLAAGKAASL------------FILHLTT---E-ALSIANEKNRK-TLSGVDVIEGVKQIG 81 (103)
Q Consensus 31 ~~iskda~~~l~~~~~~------------Fi~~lt~---~-A~~~a~~~~Rk-TI~~eDV~~Al~~lg 81 (103)
..++.++...|.+.+.. ....+-. . +.+.+..+++. +|+.+||..+++.+.
T Consensus 233 ~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 233 IAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp EEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSSS
T ss_pred eccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhhh
Confidence 47999999998887632 2222221 1 11223233333 599999999998664
No 135
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=32.76 E-value=48 Score=18.27 Aligned_cols=26 Identities=12% Similarity=0.281 Sum_probs=16.2
Q ss_pred HHHHhCCCCCcChhhHHHhhhhcCch
Q psy13691 58 SIANEKNRKTLSGVDVIEGVKQIGFE 83 (103)
Q Consensus 58 ~~a~~~~RkTI~~eDV~~Al~~lgf~ 83 (103)
...-.++.-.|+.+++..+|..+|+.
T Consensus 21 ~~~D~d~~G~i~~~el~~~l~~~g~~ 46 (85)
T 2ktg_A 21 QLFDKDNDNKLTAEELGTVMRALGAN 46 (85)
T ss_dssp HHTCTTCCSEEEHHHHHHHHHTTSSC
T ss_pred HHHCCCCCCcCcHHHHHHHHHHhCCC
Confidence 33344555667777777777776654
No 136
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=32.69 E-value=68 Score=17.97 Aligned_cols=27 Identities=7% Similarity=0.169 Sum_probs=17.9
Q ss_pred HHHHHhCCCCCcChhhHHHhhhhcCch
Q psy13691 57 LSIANEKNRKTLSGVDVIEGVKQIGFE 83 (103)
Q Consensus 57 ~~~a~~~~RkTI~~eDV~~Al~~lgf~ 83 (103)
....-.++.-.|+.+++..+|..+|+.
T Consensus 26 F~~~D~d~~G~i~~~el~~~l~~~g~~ 52 (90)
T 1avs_A 26 FDMFDADGGGDISTKELGTVMRMLGQN 52 (90)
T ss_dssp HHHHCTTCSSEECHHHHHHHHHHTTCC
T ss_pred HHHHCCCCCCcCcHHHHHHHHHHhCCC
Confidence 333444566677888888887777764
No 137
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=32.42 E-value=1.2e+02 Score=20.85 Aligned_cols=66 Identities=9% Similarity=0.015 Sum_probs=38.8
Q ss_pred CCcHHHHHHHHHhhCCC-CCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhc
Q psy13691 9 NLPSAIIQRLIKEALPK-DAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQI 80 (103)
Q Consensus 9 ~LP~a~V~ri~K~~l~~-~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~l 80 (103)
.+|...+.++++..+.. + ..++.++...+.+.+.--+..+-......+.. ...|+.+||..++...
T Consensus 160 ~~~~~~~~~~l~~~~~~~~----~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~--~~~i~~~~v~~~~~~~ 226 (319)
T 2chq_A 160 PVPKEAMKKRLLEICEKEG----VKITEDGLEALIYISGGDFRKAINALQGAAAI--GEVVDADTIYQITATA 226 (319)
T ss_dssp CCCHHHHHHHHHHHHHTTC----CCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHS--SSCBCHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHCCC
Confidence 34556666666654432 3 67899998888776554333333333233322 3468989888776543
No 138
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=32.41 E-value=98 Score=19.70 Aligned_cols=60 Identities=12% Similarity=0.107 Sum_probs=36.4
Q ss_pred cccHHHHHHHHHHHH---HHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcCchHHHHHHHHHHH
Q psy13691 32 NVSKDVRLAAGKAAS---LFILHLTTEALSIANEKNRKTLSGVDVIEGVKQIGFEVIIEILGKSYN 94 (103)
Q Consensus 32 ~iskda~~~l~~~~~---~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~~~~~~l~~~l~ 94 (103)
++.+.+...+..... .-+..+ .++....-.++.-+|+.+++..+|+.+|+.. ..+...+.
T Consensus 18 ~l~~~~l~~~~~~l~~~~~~~~~l-~~~F~~~D~d~~G~i~~~El~~~l~~~g~~~--~~~~~~~~ 80 (180)
T 3mse_B 18 NIRNIIINIMAHELSVINNHIKYI-NELFYKLDTNHNGSLSHREIYTVLASVGIKK--WDINRILQ 80 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCTTCSSSEEHHHHHHHHHHTTCCH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCHHHHHHH-HHHHHHhCCCCCCcCCHHHHHHHHHHcCCCH--HHHHHHHH
Confidence 555655555544332 222222 3344555567788999999999999999873 34444333
No 139
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=32.01 E-value=76 Score=18.30 Aligned_cols=41 Identities=7% Similarity=0.009 Sum_probs=27.4
Q ss_pred HHHHHHHhCCCCCcChhhHHHhhhhc---CchHHHHHHHHHHHH
Q psy13691 55 EALSIANEKNRKTLSGVDVIEGVKQI---GFEVIIEILGKSYNA 95 (103)
Q Consensus 55 ~A~~~a~~~~RkTI~~eDV~~Al~~l---gf~~~~~~l~~~l~~ 95 (103)
.+....-.++.-.|+.+++..+|..+ |..--...+...+..
T Consensus 46 ~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~ 89 (110)
T 1pva_A 46 KVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKA 89 (110)
T ss_dssp HHHHHHCTTCSSSBCHHHHHTGGGGTCTTCCCCCHHHHHHHHHH
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Confidence 45566666788899999999999998 543223334444433
No 140
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=31.71 E-value=57 Score=21.08 Aligned_cols=36 Identities=6% Similarity=-0.024 Sum_probs=30.6
Q ss_pred HHHhCCCCCcChhhHHHhhhhcCchHHHHHHHHHHH
Q psy13691 59 IANEKNRKTLSGVDVIEGVKQIGFEVIIEILGKSYN 94 (103)
Q Consensus 59 ~a~~~~RkTI~~eDV~~Al~~lgf~~~~~~l~~~l~ 94 (103)
.....|++--+.++++.||+++++..-.+.+++.+.
T Consensus 64 W~~~~G~~~Atv~~L~~aLr~~~l~~~ae~Ie~~l~ 99 (112)
T 1ich_A 64 WRRRTPRREATLELLGRVLRDMDLLGCLEDIEEALC 99 (112)
T ss_dssp HHHHSCCSSCHHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHhcCCCCCcHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 566778888899999999999999988888877664
No 141
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=30.75 E-value=28 Score=19.60 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=15.3
Q ss_pred CCCcHHHHHHHHHhh-CCCC
Q psy13691 8 LNLPSAIIQRLIKEA-LPKD 26 (103)
Q Consensus 8 ~~LP~a~V~ri~K~~-l~~~ 26 (103)
+.+.+++|++.+++. +|..
T Consensus 20 lgvsrstiy~~~~~g~fP~p 39 (66)
T 1z4h_A 20 TGFGKTFIYDRIKSGDLPKA 39 (66)
T ss_dssp HSSCHHHHHHHHHHHHCCCS
T ss_pred HCcCHHHHHHHHHCCCCCCC
Confidence 478999999999875 6654
No 142
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=30.71 E-value=78 Score=18.02 Aligned_cols=28 Identities=4% Similarity=0.075 Sum_probs=21.8
Q ss_pred HHHHHHhCCCCCcChhhHHHhhhhcCch
Q psy13691 56 ALSIANEKNRKTLSGVDVIEGVKQIGFE 83 (103)
Q Consensus 56 A~~~a~~~~RkTI~~eDV~~Al~~lgf~ 83 (103)
+....-.++.-.|+.+++..+|..+|+.
T Consensus 32 ~F~~~D~d~~G~I~~~El~~~l~~~g~~ 59 (91)
T 2pmy_A 32 VFAACDANRSGRLEREEFRALCTELRVR 59 (91)
T ss_dssp HHHHHCTTCSSSEEHHHHHHHHHHTTCC
T ss_pred HHHHHCCCCCCCCcHHHHHHHHHHcCcC
Confidence 4445556777789999999999999864
No 143
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=30.61 E-value=97 Score=19.07 Aligned_cols=42 Identities=17% Similarity=0.137 Sum_probs=30.6
Q ss_pred HHHHHHHHhCCCCCcChhhHHHhhhhcCchHHHHHHHHHHHH
Q psy13691 54 TEALSIANEKNRKTLSGVDVIEGVKQIGFEVIIEILGKSYNA 95 (103)
Q Consensus 54 ~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~~~~~~l~~~l~~ 95 (103)
..|....-.+|.-.|+.+++..+|..+|..---..+...+..
T Consensus 86 ~~aF~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~ 127 (148)
T 2lmt_A 86 REAFKIFDRDGDGFISPAELRFVMINLGEKVTDEEIDEMIRE 127 (148)
T ss_dssp HHHHHHHHSSCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHCCCCcCcCcHHHHHHHHHHcCccccHHHHHHHHHH
Confidence 346666677888899999999999999876544455554443
No 144
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=30.16 E-value=50 Score=18.35 Aligned_cols=23 Identities=9% Similarity=0.221 Sum_probs=14.9
Q ss_pred HhCCCCCcChhhHHHhhhhcCch
Q psy13691 61 NEKNRKTLSGVDVIEGVKQIGFE 83 (103)
Q Consensus 61 ~~~~RkTI~~eDV~~Al~~lgf~ 83 (103)
-.++.-.|+.+++..+|..+|+.
T Consensus 24 D~d~~G~I~~~el~~~l~~~g~~ 46 (86)
T 1j7q_A 24 DRNAENIAPVSDTMDMLTKLGQT 46 (86)
T ss_dssp STTTTSCBCHHHHHHHHHHTSCC
T ss_pred CCCCCCcCcHHHHHHHHHHHcCC
Confidence 34455567777777777777654
No 145
>1kvn_A SRP19; RNA binding protein; NMR {Archaeoglobus fulgidus} SCOP: d.201.1.1 PDB: 1kvv_A
Probab=30.13 E-value=24 Score=22.52 Aligned_cols=26 Identities=15% Similarity=0.377 Sum_probs=19.9
Q ss_pred HhCCCCC--------cChhhHHHhhhhcCchHHH
Q psy13691 61 NEKNRKT--------LSGVDVIEGVKQIGFEVII 86 (103)
Q Consensus 61 ~~~~RkT--------I~~eDV~~Al~~lgf~~~~ 86 (103)
..+||+. .+.++|..|++.|||.-.+
T Consensus 17 r~eGRRv~k~~aV~nP~~~EI~~a~~~Lgl~~~v 50 (104)
T 1kvn_A 17 RAEGRRIPRRFAVPNVKLHELVEASKELGLKFRA 50 (104)
T ss_dssp TTTTCCSCGGGCCSSCCHHHHHHHHHHHTSSEEE
T ss_pred hhhCCccCHHHhccCCCHHHHHHHHHHcCCCeEE
Confidence 4556663 6789999999999997543
No 146
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=29.68 E-value=56 Score=18.08 Aligned_cols=40 Identities=18% Similarity=0.324 Sum_probs=25.4
Q ss_pred HHHHHHhCCCCCcChhhHHHhhhhcCchHHHHHHHHHHHH
Q psy13691 56 ALSIANEKNRKTLSGVDVIEGVKQIGFEVIIEILGKSYNA 95 (103)
Q Consensus 56 A~~~a~~~~RkTI~~eDV~~Al~~lgf~~~~~~l~~~l~~ 95 (103)
+....-.++.-.|+.+++..+|..+|..-=-..+...+..
T Consensus 28 ~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~ 67 (87)
T 1s6j_A 28 LFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDA 67 (87)
T ss_dssp HHHHHCTTCSSCEEHHHHHHHHHTTTSSCCHHHHHHHHHH
T ss_pred HHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 3334445677789999999999988865333344444433
No 147
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=29.52 E-value=26 Score=19.98 Aligned_cols=17 Identities=18% Similarity=0.378 Sum_probs=14.8
Q ss_pred CcChhhHHHhhhhcCch
Q psy13691 67 TLSGVDVIEGVKQIGFE 83 (103)
Q Consensus 67 TI~~eDV~~Al~~lgf~ 83 (103)
.++..|+++.|+..||.
T Consensus 4 p~~~~elik~L~~~G~~ 20 (70)
T 1whz_A 4 PPRPEEVARKLRRLGFV 20 (70)
T ss_dssp CCCHHHHHHHHHHTTCE
T ss_pred CCCHHHHHHHHHHCCCE
Confidence 36789999999999995
No 148
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=29.28 E-value=69 Score=17.66 Aligned_cols=13 Identities=15% Similarity=0.396 Sum_probs=4.9
Q ss_pred cChhhHHHhhhhc
Q psy13691 68 LSGVDVIEGVKQI 80 (103)
Q Consensus 68 I~~eDV~~Al~~l 80 (103)
|+.+++..+|..+
T Consensus 28 i~~~el~~~l~~~ 40 (86)
T 2opo_A 28 ISSSELGDALKTL 40 (86)
T ss_dssp EEHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHc
Confidence 3333333333333
No 149
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=29.11 E-value=27 Score=19.01 Aligned_cols=17 Identities=18% Similarity=0.128 Sum_probs=14.6
Q ss_pred CcChhhHHHhhhhcCch
Q psy13691 67 TLSGVDVIEGVKQIGFE 83 (103)
Q Consensus 67 TI~~eDV~~Al~~lgf~ 83 (103)
.+++++|..+++++||.
T Consensus 45 ~~~~~~i~~~i~~~Gy~ 61 (68)
T 3iwl_A 45 EHSMDTLLATLKKTGKT 61 (68)
T ss_dssp SSCHHHHHHHHHTTCSC
T ss_pred cCCHHHHHHHHHHcCCc
Confidence 46889999999999985
No 150
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=28.54 E-value=82 Score=17.58 Aligned_cols=11 Identities=0% Similarity=0.063 Sum_probs=4.5
Q ss_pred CcChhhHHHhh
Q psy13691 67 TLSGVDVIEGV 77 (103)
Q Consensus 67 TI~~eDV~~Al 77 (103)
+|+.++.+..+
T Consensus 61 ~i~~~eF~~~~ 71 (92)
T 2kn2_A 61 QVNYEEFVKMM 71 (92)
T ss_dssp SEEHHHHHHHH
T ss_pred cEeHHHHHHHH
Confidence 34444444333
No 151
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=28.38 E-value=26 Score=19.11 Aligned_cols=18 Identities=28% Similarity=0.534 Sum_probs=15.0
Q ss_pred CCcChhhHHHhhhhcCch
Q psy13691 66 KTLSGVDVIEGVKQIGFE 83 (103)
Q Consensus 66 kTI~~eDV~~Al~~lgf~ 83 (103)
..++.++|..+++.+||.
T Consensus 49 ~~~~~~~i~~~i~~~Gy~ 66 (74)
T 3dxs_X 49 NLVKEEDIKEEIEDAGFE 66 (74)
T ss_dssp TTCCHHHHHHHHHHHTCE
T ss_pred CCCCHHHHHHHHHHCCCc
Confidence 346888999999999985
No 152
>1jid_A Signal recognition particle 19 kDa protein; signal recognition particle (SRP), protein-RNA complex, GGAG tetraloop, signaling protein/RNA complex; HET: 5BU A23; 1.80A {Homo sapiens} SCOP: d.201.1.1 PDB: 3ktv_B* 1mfq_B* 1ry1_B* 2go5_B 2j37_B
Probab=27.93 E-value=29 Score=23.02 Aligned_cols=27 Identities=11% Similarity=0.358 Sum_probs=20.6
Q ss_pred HHhCCCCC--------cChhhHHHhhhhcCchHHH
Q psy13691 60 ANEKNRKT--------LSGVDVIEGVKQIGFEVII 86 (103)
Q Consensus 60 a~~~~RkT--------I~~eDV~~Al~~lgf~~~~ 86 (103)
+..+||+. -+.++|..|++.|||.-.+
T Consensus 28 tr~eGRRV~k~~aVenPt~~EI~~a~~~Lgl~~~v 62 (128)
T 1jid_A 28 TIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFL 62 (128)
T ss_dssp CTTTTCCSCTTTCBSSCCHHHHHHHHHHTTCCEEE
T ss_pred ChhhcCccCHHHhccCCCHHHHHHHHHHcCCCeEE
Confidence 34567764 6789999999999997543
No 153
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A
Probab=27.88 E-value=91 Score=17.90 Aligned_cols=65 Identities=9% Similarity=-0.004 Sum_probs=36.5
Q ss_pred CCcHHHHHHHHHhhCCCCCcccccccHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhc
Q psy13691 9 NLPSAIIQRLIKEALPKDAEGKINVSKDV-RLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQI 80 (103)
Q Consensus 9 ~LP~a~V~ri~K~~l~~~~~~~~~iskda-~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~l 80 (103)
.++..-+.++++..=.+ -.|+-+- ..++.. ...-. --...+....-.++.-.|+.+++..+|..+
T Consensus 5 ~~t~~e~~~~~~~~d~~-----g~i~~~eF~~~~~~-~~~~~-~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 70 (109)
T 1rwy_A 5 LLSAEDIKKAIGAFTAA-----DSFDHKKFFQMVGL-KKKSA-DDVKKVFHILDKDKSGFIEEDELGSILKGF 70 (109)
T ss_dssp HSCHHHHHHHHHTTCST-----TCCCHHHHHHHHTG-GGSCH-HHHHHHHHHHSTTCSSEECHHHHHTHHHHH
T ss_pred cCCHHHHHHHHHHcCCC-----CcEeHHHHHHHHhc-CcchH-HHHHHHHHHHCCCCCCeEcHHHHHHHHHHH
Confidence 35667788888775211 2454332 222110 00000 111345555666778899999999999998
No 154
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=27.56 E-value=91 Score=17.83 Aligned_cols=34 Identities=6% Similarity=-0.000 Sum_probs=26.9
Q ss_pred HhCCCCCcChhhHHHhhhhcCchHHHHHHHHHHH
Q psy13691 61 NEKNRKTLSGVDVIEGVKQIGFEVIIEILGKSYN 94 (103)
Q Consensus 61 ~~~~RkTI~~eDV~~Al~~lgf~~~~~~l~~~l~ 94 (103)
.+.|+..++.+.+....+.||.++....+-..+.
T Consensus 47 ~E~G~~~p~~~~l~~ia~~l~v~~~~~~l~~~~~ 80 (86)
T 3eus_A 47 VETRERRLDVIEFAKWMAACEGLDVVSEIVATIA 80 (86)
T ss_dssp HHTTSSCCBHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 4567788999999999999999887666655544
No 155
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=27.34 E-value=1.1e+02 Score=18.67 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=23.1
Q ss_pred HHHHHHHhCCCCCcChhhHHHhhhhcCch
Q psy13691 55 EALSIANEKNRKTLSGVDVIEGVKQIGFE 83 (103)
Q Consensus 55 ~A~~~a~~~~RkTI~~eDV~~Al~~lgf~ 83 (103)
.|....-.++.-.|+.+++..+|..+|..
T Consensus 89 ~~F~~~D~d~~G~I~~~El~~~l~~~g~~ 117 (159)
T 2ovk_C 89 EAFKTFDREGQGLISSAEIRNVLKMLGER 117 (159)
T ss_dssp HHHHHTCTTSSSEECHHHHHHHHHHSSSC
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHHHhCCC
Confidence 45565666778899999999999999854
No 156
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=27.16 E-value=28 Score=24.00 Aligned_cols=30 Identities=23% Similarity=0.235 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhCCCCCcChhhHHHhhhhcC
Q psy13691 52 LTTEALSIANEKNRKTLSGVDVIEGVKQIG 81 (103)
Q Consensus 52 lt~~A~~~a~~~~RkTI~~eDV~~Al~~lg 81 (103)
+...|...|...+++.|+.+|+..|++..-
T Consensus 225 l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~ 254 (268)
T 2r62_A 225 IINEAALLAGRNNQKEVRQQHLKEAVERGI 254 (268)
T ss_dssp HHHHHHHTTSSSCCCSCCHHHHHTSCTTCC
T ss_pred HHHHHHHHHHHhccCCcCHHHHHHHHHHHh
Confidence 444565667777889999999999988653
No 157
>3dlu_A SRP19, signal recognition particle 19 kDa protein; protein-RNA, cytoplasm, ribonucleoprotein, RNA-binding, RNA binding protein; 1.80A {Pyrococcus furiosus} PDB: 3dlv_B
Probab=26.97 E-value=32 Score=22.04 Aligned_cols=25 Identities=12% Similarity=0.294 Sum_probs=19.6
Q ss_pred HHhCCCCC--------cChhhHHHhhhhcCchH
Q psy13691 60 ANEKNRKT--------LSGVDVIEGVKQIGFEV 84 (103)
Q Consensus 60 a~~~~RkT--------I~~eDV~~Al~~lgf~~ 84 (103)
+..+||+. .+.++|..|++.|||.-
T Consensus 16 sr~eGRRV~k~~aV~nPt~~EI~~a~~~lgl~~ 48 (106)
T 3dlu_A 16 SRKYGRIVPRSIAVESPRVEEIVRAAEELKFKV 48 (106)
T ss_dssp CGGGTCCSCTTTSBSSCCHHHHHHHHHHTTCEE
T ss_pred ChhhcCccCHHHhccCCCHHHHHHHHHHcCCCc
Confidence 34566663 77899999999999974
No 158
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=26.96 E-value=24 Score=29.12 Aligned_cols=47 Identities=11% Similarity=0.088 Sum_probs=33.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcC--hhhHHHhhh
Q psy13691 32 NVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLS--GVDVIEGVK 78 (103)
Q Consensus 32 ~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~--~eDV~~Al~ 78 (103)
-|-+|.+.+|++||...=.||.......-..++++++. -.+|..+|.
T Consensus 443 ei~~ei~~a~~~~~r~l~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 491 (621)
T 2q2e_B 443 VIKEEIDLAIKEVARKLKHYLSKQSNLKKRREKEIIITKVLPKLAAKVA 491 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHTTSSHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999998776554444455544 234444443
No 159
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=26.85 E-value=19 Score=29.05 Aligned_cols=49 Identities=14% Similarity=0.069 Sum_probs=35.6
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcC--hhhHHHhhhh
Q psy13691 31 INVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLS--GVDVIEGVKQ 79 (103)
Q Consensus 31 ~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~--~eDV~~Al~~ 79 (103)
--|-+|.+.+|++||...=.||.......-...+++++. -.+|..+|..
T Consensus 434 ~ei~~ei~~a~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (530)
T 2zbk_B 434 ENIEKEIKNALMEVARKLKQYLSEKRKEQEAKKKLLAYLKYIPEVSRSLAT 484 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999999999988665544444455543 3466666664
No 160
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=26.63 E-value=1.9e+02 Score=21.21 Aligned_cols=68 Identities=15% Similarity=0.068 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHH----HHHHHHHHHHHHHHhC------------CCCCcChhhHHH
Q psy13691 12 SAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASL----FILHLTTEALSIANEK------------NRKTLSGVDVIE 75 (103)
Q Consensus 12 ~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~----Fi~~lt~~A~~~a~~~------------~RkTI~~eDV~~ 75 (103)
......|++..+... ...++.+....|.+.+.- -|..|...|...+..+ ....|+.+|+..
T Consensus 284 ~~~r~~il~~~~~~~---~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~ 360 (389)
T 3vfd_A 284 EETRLLLLKNLLCKQ---GSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTE 360 (389)
T ss_dssp HHHHHHHHHHHHTTS---CCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHH
Confidence 344555565554331 146788887777776543 4556666666555544 456899999999
Q ss_pred hhhhcCc
Q psy13691 76 GVKQIGF 82 (103)
Q Consensus 76 Al~~lgf 82 (103)
+++...-
T Consensus 361 al~~~~~ 367 (389)
T 3vfd_A 361 SLKKIKR 367 (389)
T ss_dssp HHHHCCC
T ss_pred HHHHcCC
Confidence 9987643
No 161
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=26.46 E-value=97 Score=17.78 Aligned_cols=80 Identities=9% Similarity=-0.046 Sum_probs=43.9
Q ss_pred CcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhc---CchHHH
Q psy13691 10 LPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQI---GFEVII 86 (103)
Q Consensus 10 LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~l---gf~~~~ 86 (103)
++..-|.++++..=++ -.|+-+--..+......- .--...+....-.++.-.|+.+++..+|..+ |..---
T Consensus 6 ~~~~e~~~l~~~~d~~-----g~i~~~eF~~~~~~~~~~-~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~ 79 (108)
T 2pvb_A 6 LKDADVAAALAACSAA-----DSFKHKEFFAKVGLASKS-LDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTD 79 (108)
T ss_dssp SCHHHHHHHHHHTCST-----TCCCHHHHHHHHTGGGSC-HHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTSCCCCH
T ss_pred CCHHHHHHHHHHhCCC-----CcCcHHHHHHHHhCChhH-HHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHhccCCCCCH
Confidence 6778888888886322 245543222111100000 0112345566666788899999999999998 543223
Q ss_pred HHHHHHHHH
Q psy13691 87 EILGKSYNA 95 (103)
Q Consensus 87 ~~l~~~l~~ 95 (103)
..+...+..
T Consensus 80 ~~~~~~~~~ 88 (108)
T 2pvb_A 80 AETKAFLAD 88 (108)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444433
No 162
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}
Probab=26.39 E-value=49 Score=19.17 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=17.5
Q ss_pred cChhhHHHhhhhc--CchHHHHHHH
Q psy13691 68 LSGVDVIEGVKQI--GFEVIIEILG 90 (103)
Q Consensus 68 I~~eDV~~Al~~l--gf~~~~~~l~ 90 (103)
=+++||..-|+.+ |+++|.+...
T Consensus 7 Ws~~~V~~WL~~l~~gl~~Y~~~F~ 31 (80)
T 3bs5_B 7 WSPSQVVDWMKGLDDCLQQYIKNFE 31 (80)
T ss_dssp CCHHHHHHHHHTSCGGGGGGHHHHH
T ss_pred CCHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3678898889888 4888876654
No 163
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A
Probab=26.29 E-value=43 Score=20.45 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=18.9
Q ss_pred CcChhhHHHhhhhc--CchHHHHHHH
Q psy13691 67 TLSGVDVIEGVKQI--GFEVIIEILG 90 (103)
Q Consensus 67 TI~~eDV~~Al~~l--gf~~~~~~l~ 90 (103)
.=+.+||..-|+.+ ||.+|.+...
T Consensus 16 ~WsvedV~~wl~~~~~g~~~y~~~F~ 41 (89)
T 1pk1_B 16 DWTIEEVIQYIESNDNSLAVHGDLFR 41 (89)
T ss_dssp GCCHHHHHHHHHHHCGGGGGGHHHHH
T ss_pred hCCHHHHHHHHHHHccchHHHHHHHH
Confidence 45789999999988 7888876543
No 164
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=26.12 E-value=2.4e+02 Score=22.18 Aligned_cols=46 Identities=15% Similarity=-0.086 Sum_probs=32.7
Q ss_pred ccccHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHhCCCCCcChhhHHHh
Q psy13691 31 INVSKDVRLAAGKAASL-------------FILHLTTEALSIANEKNRKTLSGVDVIEG 76 (103)
Q Consensus 31 ~~iskda~~~l~~~~~~-------------Fi~~lt~~A~~~a~~~~RkTI~~eDV~~A 76 (103)
+.++.+..+.+.+.+.. -...+...|...|.-.||..|+++||..|
T Consensus 224 v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~~a 282 (500)
T 3nbx_X 224 ITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLILL 282 (500)
T ss_dssp CBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGGGG
T ss_pred ccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHHHH
Confidence 67888888777766532 22234455666788899999999999933
No 165
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=26.00 E-value=1.3e+02 Score=20.87 Aligned_cols=52 Identities=12% Similarity=0.109 Sum_probs=34.6
Q ss_pred cccHHHHHHHHHHHHHH----HHHHHHHHHHHHHhCC------------CCCcChhhHHHhhhhcCch
Q psy13691 32 NVSKDVRLAAGKAASLF----ILHLTTEALSIANEKN------------RKTLSGVDVIEGVKQIGFE 83 (103)
Q Consensus 32 ~iskda~~~l~~~~~~F----i~~lt~~A~~~a~~~~------------RkTI~~eDV~~Al~~lgf~ 83 (103)
.++.++...+.+.+.-| +..|..+|...+..+. ...|+.+|+..|++...-.
T Consensus 208 ~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s 275 (297)
T 3b9p_A 208 PLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRS 275 (297)
T ss_dssp CSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCCCS
T ss_pred CCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCCC
Confidence 46777777777665443 3355556655555433 3689999999999987654
No 166
>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A
Probab=25.83 E-value=52 Score=19.44 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=22.6
Q ss_pred HHHHHHhCCCCCcChhhHHHhhhhcCch
Q psy13691 56 ALSIANEKNRKTLSGVDVIEGVKQIGFE 83 (103)
Q Consensus 56 A~~~a~~~~RkTI~~eDV~~Al~~lgf~ 83 (103)
|+-++...|...++.+||...|+..|.+
T Consensus 7 A~Lll~~~g~~~~ta~~I~~il~aaGve 34 (70)
T 2lbf_B 7 SYLLAALGGNSSPSAKDIKKILDSVGIE 34 (70)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHTTTCC
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHcCCC
Confidence 4556666777799999999999988875
No 167
>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Drosophila melanogaster}
Probab=25.39 E-value=45 Score=20.93 Aligned_cols=23 Identities=9% Similarity=0.147 Sum_probs=19.3
Q ss_pred CcChhhHHHhhhhc--CchHHHHHH
Q psy13691 67 TLSGVDVIEGVKQI--GFEVIIEIL 89 (103)
Q Consensus 67 TI~~eDV~~Al~~l--gf~~~~~~l 89 (103)
.=+++||..-|+.+ ||++|.+..
T Consensus 25 ~Wt~~~V~~WL~~~~~gl~~Y~~~F 49 (106)
T 3bs5_A 25 LWTVSDVLKWYRRHCGEYTQYEQLF 49 (106)
T ss_dssp GCCHHHHHHHHHHHSGGGGGGHHHH
T ss_pred cCCHHHHHHHHHHHHcchHHHHHHH
Confidence 46889999999999 999987654
No 168
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=25.38 E-value=32 Score=20.46 Aligned_cols=20 Identities=10% Similarity=0.187 Sum_probs=17.1
Q ss_pred CCCCcChhhHHHhhhhcCch
Q psy13691 64 NRKTLSGVDVIEGVKQIGFE 83 (103)
Q Consensus 64 ~RkTI~~eDV~~Al~~lgf~ 83 (103)
.++-|..+.++..|+++||.
T Consensus 57 ~~~gid~d~l~~~L~~~g~~ 76 (81)
T 2fi0_A 57 KLAGTPMDKIVRTLEANGYE 76 (81)
T ss_dssp HHHTCCHHHHHHHHHHTTCE
T ss_pred HHcCCCHHHHHHHHHHcCCE
Confidence 45668999999999999995
No 169
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10
Probab=24.99 E-value=75 Score=17.12 Aligned_cols=17 Identities=6% Similarity=-0.083 Sum_probs=8.7
Q ss_pred CCCCCcChhhHHHhhhh
Q psy13691 63 KNRKTLSGVDVIEGVKQ 79 (103)
Q Consensus 63 ~~RkTI~~eDV~~Al~~ 79 (103)
++...|+.++....+..
T Consensus 50 ~~dg~i~~~ef~~~~~~ 66 (78)
T 1k9u_A 50 DGDGFIDFNEFISFCNA 66 (78)
T ss_dssp TCSSSEEHHHHHHHHHH
T ss_pred CCCCeEcHHHHHHHHHH
Confidence 34445555555555443
No 170
>2xns_C RGS14, regulator of G-protein signaling 14; hydrolase-peptide complex, ADP-ribosylation, arginine finger binding, lipoprotein, nucleotide-binding; HET: GDP SRT; 3.41A {Homo sapiens}
Probab=24.95 E-value=19 Score=19.23 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhh
Q psy13691 47 LFILHLTTEALSIANEKNRKTLSGVDVIEGVKQ 79 (103)
Q Consensus 47 ~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~ 79 (103)
.|+..|+. |...-.++.|--++.||+..||-+
T Consensus 4 ~~~Ellsr-aQs~radDQRGLL~KEdLv~~l~d 35 (40)
T 2xns_C 4 GLVELLNR-VQSSGAHDQRGLLSNEEVFRALRD 35 (40)
T ss_dssp HHHHHHHH-HTTCSCCSCSSSCCHHHHHHHHHH
T ss_pred HHHHHHHH-HHhcccccccccccHHHHHHHhHH
Confidence 45555544 433335568889999999999864
No 171
>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.67 E-value=47 Score=19.46 Aligned_cols=25 Identities=16% Similarity=-0.002 Sum_probs=20.0
Q ss_pred CcChhhHHHhhhhcCchHHHHHHHH
Q psy13691 67 TLSGVDVIEGVKQIGFEVIIEILGK 91 (103)
Q Consensus 67 TI~~eDV~~Al~~lgf~~~~~~l~~ 91 (103)
.....+|..-|+.+|+++|.+....
T Consensus 9 ~~~~~~V~~WL~~lgL~~Y~~~F~~ 33 (80)
T 2eam_A 9 RCPVQTVGQWLESIGLPQYENHLMA 33 (80)
T ss_dssp CCCCCCHHHHHHHHTCGGGHHHHHH
T ss_pred CCChhHHHHHHHHCCCHHHHHHHHH
Confidence 4556789999999999999876544
No 172
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=24.47 E-value=1.4e+02 Score=18.98 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=23.9
Q ss_pred HHHHHHHhCCCCCcChhhHHHhhhhcCch
Q psy13691 55 EALSIANEKNRKTLSGVDVIEGVKQIGFE 83 (103)
Q Consensus 55 ~A~~~a~~~~RkTI~~eDV~~Al~~lgf~ 83 (103)
+|...--.+|.-+|+.+++..+|..+|..
T Consensus 89 ~aF~~fD~d~~G~I~~~el~~~l~~~g~~ 117 (159)
T 3i5g_C 89 EAFKTFDREGQGLISSAEIRNVLKMLGER 117 (159)
T ss_dssp HHHHHHCTTSSSEECHHHHHHHHHHSSSC
T ss_pred HHHHHHhcCCCCcCcHHHHHHHHHHhCCC
Confidence 46666667788899999999999999975
No 173
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=24.36 E-value=1.2e+02 Score=18.00 Aligned_cols=10 Identities=0% Similarity=0.085 Sum_probs=3.8
Q ss_pred CCcChhhHHH
Q psy13691 66 KTLSGVDVIE 75 (103)
Q Consensus 66 kTI~~eDV~~ 75 (103)
.+|+.++.+.
T Consensus 61 g~i~~~eF~~ 70 (149)
T 2mys_C 61 AAITFEEFLP 70 (149)
T ss_pred CcCcHHHHHH
Confidence 3333333333
No 174
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=23.92 E-value=1.2e+02 Score=20.88 Aligned_cols=66 Identities=12% Similarity=0.019 Sum_probs=37.1
Q ss_pred CcHHHHHHHHHhhCC-CCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcC
Q psy13691 10 LPSAIIQRLIKEALP-KDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQIG 81 (103)
Q Consensus 10 LP~a~V~ri~K~~l~-~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lg 81 (103)
++...+.++++..+. .+ ..++.++...+.+.+.--+..+-......+.. .+.|+.+||..++....
T Consensus 166 ~~~~~~~~~l~~~~~~~~----~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~--~~~i~~~~v~~~~~~~~ 232 (323)
T 1sxj_B 166 LSDEDVLKRLLQIIKLED----VKYTNDGLEAIIFTAEGDMRQAINNLQSTVAG--HGLVNADNVFKIVDSPH 232 (323)
T ss_dssp CCHHHHHHHHHHHHHHHT----CCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HSSBCHHHHHHHHTSCC
T ss_pred CCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc--CCCcCHHHHHHHHCCCC
Confidence 445556666655432 12 56888888888777653332222222222211 24688899888876544
No 175
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=23.76 E-value=23 Score=24.28 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=16.3
Q ss_pred ChhhHHHhhhhcCchHHHH
Q psy13691 69 SGVDVIEGVKQIGFEVIIE 87 (103)
Q Consensus 69 ~~eDV~~Al~~lgf~~~~~ 87 (103)
+.+.|+..|+.+||.+|+.
T Consensus 108 ~~~~vle~Lk~~gl~~~Ir 126 (171)
T 2p2u_A 108 TKDMTLERLRQFGISEGIR 126 (171)
T ss_dssp CHHHHHHHHHHTTCCTTCC
T ss_pred CHHHHHHHHHHCCcHhhee
Confidence 4578999999999999874
No 176
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=23.73 E-value=1.3e+02 Score=18.41 Aligned_cols=21 Identities=14% Similarity=0.185 Sum_probs=13.0
Q ss_pred hCCCCCcChhhHHHhhhhcCc
Q psy13691 62 EKNRKTLSGVDVIEGVKQIGF 82 (103)
Q Consensus 62 ~~~RkTI~~eDV~~Al~~lgf 82 (103)
.++--+|+.+++..+|..+|+
T Consensus 36 ~d~~G~i~~~el~~~l~~~g~ 56 (166)
T 2mys_B 36 QNADGIIDKDDLRETFAAMGR 56 (166)
T ss_pred CCCCCcCCHHHHHHHHHHhCC
Confidence 345556666666666666665
No 177
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=23.66 E-value=1.3e+02 Score=18.20 Aligned_cols=25 Identities=8% Similarity=0.064 Sum_probs=16.7
Q ss_pred HHhCCCCCcChhhHHHhhhhcCchH
Q psy13691 60 ANEKNRKTLSGVDVIEGVKQIGFEV 84 (103)
Q Consensus 60 a~~~~RkTI~~eDV~~Al~~lgf~~ 84 (103)
.-.++.-+|+.+++..+|..+|+.-
T Consensus 25 ~D~d~~G~i~~~el~~~l~~~g~~~ 49 (153)
T 2ovk_B 25 IDQDRDGFIGMEDLKDMFSSLGRVP 49 (153)
T ss_dssp HCCSTTTCCCHHHHHHHTTTTTSCC
T ss_pred hCCCCCCeECHHHHHHHHHHhCCCC
Confidence 3345566777777777777777643
No 178
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Probab=23.36 E-value=1.4e+02 Score=18.59 Aligned_cols=67 Identities=4% Similarity=0.009 Sum_probs=38.8
Q ss_pred CCCcHHHHHHHHHhhCCCCCcccccccHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcCch
Q psy13691 8 LNLPSAIIQRLIKEALPKDAEGKINVSKD-VRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQIGFE 83 (103)
Q Consensus 8 ~~LP~a~V~ri~K~~l~~~~~~~~~iskd-a~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~ 83 (103)
..++...+.++++..-.++ + -.|+-+ ...++... --...+....-.++.-+|+.+++..+|..+|..
T Consensus 42 ~~~~~~~~~~l~~~~D~~~-~--g~i~~~eF~~~~~~~------~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~ 109 (173)
T 1alv_A 42 DGFGIDTCRSMVAVMDSDT-T--GKLGFEEFKYLWNNI------KKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFH 109 (173)
T ss_dssp SCCCHHHHHHHHHHHCTTC-S--SSBCHHHHHHHHHHH------HHHHHHHHHHCTTCCSSBCTTTHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHcCCC-C--CccCHHHHHHHHHHH------HHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCC
Confidence 4556667777776653221 2 234432 22222211 112345555566788899999999999988864
No 179
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A
Probab=23.33 E-value=41 Score=17.02 Aligned_cols=16 Identities=19% Similarity=0.414 Sum_probs=12.9
Q ss_pred cChhhHHHhhhhcCch
Q psy13691 68 LSGVDVIEGVKQIGFE 83 (103)
Q Consensus 68 I~~eDV~~Al~~lgf~ 83 (103)
++.+++..+++.+||.
T Consensus 47 ~~~~~i~~~i~~~G~~ 62 (64)
T 2xmm_A 47 LGEEQLRTAIASAGYE 62 (64)
T ss_dssp SCHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHcCCC
Confidence 5678888999998884
No 180
>3vlv_A ALGQ1; sugar binding protein, alginate; HET: MAW LGU; 1.50A {Sphingomonas SP} SCOP: c.94.1.1 PDB: 3vlu_A* 3vlw_A* 1y3n_A* 1y3p_A* 1y3q_A 1j1n_A* 1kwh_A
Probab=23.25 E-value=57 Score=24.84 Aligned_cols=67 Identities=16% Similarity=0.101 Sum_probs=39.0
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc--ChhhHHHhhhhcCchHHHHHHHHHHHHHHhc
Q psy13691 31 INVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTL--SGVDVIEGVKQIGFEVIIEILGKSYNAAVSI 99 (103)
Q Consensus 31 ~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI--~~eDV~~Al~~lgf~~~~~~l~~~l~~~k~~ 99 (103)
..++.|-...+..-.+..-.++.......-. |+.-+ .-+..++-|+.+|++++++..++.+++|++.
T Consensus 424 ~~~~~~e~~~~~~~~~~l~~~~~e~~~~~i~--G~~d~d~~~d~~v~~l~~~G~d~~~~~~q~~~d~~~~~ 492 (502)
T 3vlv_A 424 VNLTVEEREIYDKYWPDVKTYMFEMGQSWVM--GTKDPEKTWNDYQQQLKNRGFYQVMIVMQKAYDRQYGG 492 (502)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--TSSCHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC--
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh--CCCchhhHHHHHHHHHHHCChHHHHHHHHHHHHHHHhh
Confidence 4566554333333333333333322222222 23334 2567788899999999999999999999654
No 181
>3a09_A ALGQ1; sugar binding protein, alginate; HET: MAW BEM MAV; 1.40A {Sphingomonas} PDB: 1y3p_A* 1y3q_A 1y3n_A* 3vlv_A* 3vlu_A* 3vlw_A* 1j1n_A* 1kwh_A
Probab=23.23 E-value=65 Score=23.84 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=23.3
Q ss_pred hhhHHHhhhhcCchHHHHHHHHHHHHH
Q psy13691 70 GVDVIEGVKQIGFEVIIEILGKSYNAA 96 (103)
Q Consensus 70 ~eDV~~Al~~lgf~~~~~~l~~~l~~~ 96 (103)
-++.++-|+.+|.+++++..++.+++|
T Consensus 463 ~d~~v~~l~~~G~d~~~~~~q~~ydr~ 489 (490)
T 3a09_A 463 WNDYQQQLKNRGFYQVMIVMQKAYDRQ 489 (490)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHhccc
Confidence 456778889999999999999998877
No 182
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=23.20 E-value=1.1e+02 Score=22.21 Aligned_cols=37 Identities=8% Similarity=0.165 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCC------------------CCcChhhHHHhhhhcC
Q psy13691 45 ASLFILHLTTEALSIANEKNR------------------KTLSGVDVIEGVKQIG 81 (103)
Q Consensus 45 ~~~Fi~~lt~~A~~~a~~~~R------------------kTI~~eDV~~Al~~lg 81 (103)
...|-.-|+-+=.++|..... -.|+++||+.|++.|.
T Consensus 88 ~gdfy~eLavqIvEvC~~tr~~nGGli~l~el~~~~~r~~~IS~dDi~rAik~L~ 142 (233)
T 1u5t_A 88 VNDFYYEVCLKVIEICRQTKDMNGGVISFQELEKVHFRKLNVGLDDLEKSIDMLK 142 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSSCEEHHHHHHTTTTTTTCCHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHhhcCCCHHHHHHHHHHhh
Confidence 378888888888888876432 2799999999998764
No 183
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=23.13 E-value=80 Score=15.61 Aligned_cols=25 Identities=16% Similarity=0.360 Sum_probs=15.2
Q ss_pred cChhhHHHhhhhcCchHHHHHHHHH
Q psy13691 68 LSGVDVIEGVKQIGFEVIIEILGKS 92 (103)
Q Consensus 68 I~~eDV~~Al~~lgf~~~~~~l~~~ 92 (103)
|+.++++.+++.+-.-+..+-++..
T Consensus 1 ~~~~~iie~i~~lTvlEl~eLvk~l 25 (30)
T 1zav_U 1 MTIDEIIEAIEKLTVSELAELVKKL 25 (30)
T ss_dssp CCHHHHHHHHHHSBHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCcHHHHHHHHHHH
Confidence 3557788888877665544444433
No 184
>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens}
Probab=23.06 E-value=60 Score=20.19 Aligned_cols=23 Identities=9% Similarity=0.215 Sum_probs=19.2
Q ss_pred ChhhHHHhhhhcCchHHHHHHHH
Q psy13691 69 SGVDVIEGVKQIGFEVIIEILGK 91 (103)
Q Consensus 69 ~~eDV~~Al~~lgf~~~~~~l~~ 91 (103)
...+|..-|+.+|+++|.+....
T Consensus 25 ~~~~V~~WL~~lgL~qY~~~F~~ 47 (100)
T 2kg5_A 25 QDLDIAVWLATVHLEQYADTFRR 47 (100)
T ss_dssp TTCBHHHHHGGGTCGGGHHHHHH
T ss_pred CcChHHHHHHHCCCHHHHHHHHH
Confidence 56789999999999999876643
No 185
>1dlw_A Hemoglobin; oxygen storage/transport complex; HET: HEM; 1.54A {Paramecium caudatum} SCOP: a.1.1.1 PDB: 1uvy_A*
Probab=23.01 E-value=60 Score=19.93 Aligned_cols=35 Identities=11% Similarity=0.084 Sum_probs=24.7
Q ss_pred CcChhh-------HHHhhhhcCc-hHHHHHHHHHHHHHHhccc
Q psy13691 67 TLSGVD-------VIEGVKQIGF-EVIIEILGKSYNAAVSIKV 101 (103)
Q Consensus 67 TI~~eD-------V~~Al~~lgf-~~~~~~l~~~l~~~k~~~~ 101 (103)
.|+++| +..||+++|+ ++....+...++..+...|
T Consensus 72 ~I~~~~f~~wl~~~~~al~~~~~~~~~~~~~~~~~~~~a~~iv 114 (116)
T 1dlw_A 72 GVSNAQFTTVIGHLRSALTGAGVAAALVEQTVAVAETVRGDVV 114 (116)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHC
T ss_pred CcCHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHh
Confidence 466654 6778888888 4678888888777665443
No 186
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=22.74 E-value=76 Score=22.81 Aligned_cols=48 Identities=10% Similarity=-0.027 Sum_probs=28.7
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhh
Q psy13691 31 INVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVK 78 (103)
Q Consensus 31 ~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~ 78 (103)
..|+.++...|.+.+.-=...+..+-...+.-.+.++|+.+||...+.
T Consensus 160 ~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~ 207 (343)
T 1jr3_D 160 LELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVN 207 (343)
T ss_dssp CEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHh
Confidence 789999998888765532222223222233322345799888876654
No 187
>1o7b_T Tumor necrosis factor-inducible protein TSG-6; hyaluronan-binding domain, carbohydrate-binding domain, LINK module, cell adhesion, glycoprotein; NMR {Homo sapiens} SCOP: d.169.1.4 PDB: 1o7c_T 2pf5_A*
Probab=22.72 E-value=67 Score=20.13 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=25.8
Q ss_pred HHHHHHHHhCCCCCcChhhHHHhhhhcCch
Q psy13691 54 TEALSIANEKNRKTLSGVDVIEGVKQIGFE 83 (103)
Q Consensus 54 ~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~ 83 (103)
.+|.+.|...+-.-=+++.+..|-+ .||+
T Consensus 17 ~eA~~aC~~~ga~LAs~~QL~~A~~-~G~~ 45 (98)
T 1o7b_T 17 AEAKAVCEFEGGHLATYKQLEAARK-IGFH 45 (98)
T ss_dssp HHHHHHHHHSSCEECCHHHHHHHHT-TTCC
T ss_pred HHHHHHHHhcCCccCCHHHHHHHHH-cCcc
Confidence 6789999999999999999999987 7775
No 188
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=22.38 E-value=1e+02 Score=16.53 Aligned_cols=39 Identities=18% Similarity=0.100 Sum_probs=30.8
Q ss_pred HHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13691 15 IQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALS 58 (103)
Q Consensus 15 V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~ 58 (103)
|+.+|-.-.+ . ..-..|...++-+....||..+..+|.+
T Consensus 6 i~~mMy~fGD-~----~~P~~ETv~llEeiV~~~i~~l~~~A~~ 44 (45)
T 1bh9_A 6 LRCMMYGFGD-D----QNPYTESVDILEDLVIEFITEMTHKAMS 44 (45)
T ss_dssp HHHHHHHTTS-C----SSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-C----CCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5556655533 3 4678899999999999999999999865
No 189
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=22.26 E-value=1.2e+02 Score=18.24 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=16.3
Q ss_pred hCC-CCCcChhhHHHhhhhcCch
Q psy13691 62 EKN-RKTLSGVDVIEGVKQIGFE 83 (103)
Q Consensus 62 ~~~-RkTI~~eDV~~Al~~lgf~ 83 (103)
.++ .-+|+.+++..+|..+|+.
T Consensus 25 ~d~~~G~i~~~el~~~l~~~g~~ 47 (146)
T 2qac_A 25 EKSSGGKISIDNASYNARKLGLA 47 (146)
T ss_dssp HHCBTTBEEHHHHHHHHHHTTCC
T ss_pred ccCCCCcccHHHHHHHHHHhCCC
Confidence 345 5678888888888888765
No 190
>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens}
Probab=22.08 E-value=64 Score=18.98 Aligned_cols=22 Identities=18% Similarity=-0.043 Sum_probs=18.1
Q ss_pred hhhHHHhhhhcCchHHHHHHHH
Q psy13691 70 GVDVIEGVKQIGFEVIIEILGK 91 (103)
Q Consensus 70 ~eDV~~Al~~lgf~~~~~~l~~ 91 (103)
..+|..-|+.+|+++|.+....
T Consensus 15 ~~~V~~WL~~lgL~~Y~~~F~~ 36 (83)
T 2qkq_A 15 FGSVGEWLRAIKMGRYEESFAA 36 (83)
T ss_dssp CSSHHHHHHHTTCGGGHHHHHH
T ss_pred cchHHHHHHHCCCHHHHHHHHH
Confidence 3588899999999999887654
No 191
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=21.82 E-value=1e+02 Score=18.28 Aligned_cols=38 Identities=13% Similarity=0.126 Sum_probs=24.6
Q ss_pred HHHHHhCCCCCcChhhHHHhhhhcCchHHHHHHHHHHH
Q psy13691 57 LSIANEKNRKTLSGVDVIEGVKQIGFEVIIEILGKSYN 94 (103)
Q Consensus 57 ~~~a~~~~RkTI~~eDV~~Al~~lgf~~~~~~l~~~l~ 94 (103)
....-.++.-.|+.+++..+|..+|..-=-..+...+.
T Consensus 82 F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~ 119 (143)
T 3j04_B 82 FACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYR 119 (143)
T ss_dssp HTTSCSSSCCCCCTTTHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHCCCCCCeEcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 33334467778999999999999886432233444333
No 192
>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A
Probab=21.71 E-value=66 Score=18.83 Aligned_cols=22 Identities=18% Similarity=-0.011 Sum_probs=17.9
Q ss_pred hhhHHHhhhhcCchHHHHHHHH
Q psy13691 70 GVDVIEGVKQIGFEVIIEILGK 91 (103)
Q Consensus 70 ~eDV~~Al~~lgf~~~~~~l~~ 91 (103)
..+|..-|+.+|+++|.+....
T Consensus 11 ~~~v~~WL~~lgL~~Y~~~F~~ 32 (82)
T 1b4f_A 11 FNTVDEWLEAIKMGQYKESFAN 32 (82)
T ss_dssp CSSHHHHHHHTTCGGGHHHHHH
T ss_pred ccHHHHHHHHCCCHHHHHHHHH
Confidence 4688889999999999876654
No 193
>2jrf_A Tubulin polymerization-promoting protein family member 3; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=21.70 E-value=1.3e+02 Score=20.98 Aligned_cols=54 Identities=9% Similarity=0.127 Sum_probs=32.4
Q ss_pred CCCcHHHHHHHHHhh-CCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhc
Q psy13691 8 LNLPSAIIQRLIKEA-LPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQI 80 (103)
Q Consensus 8 ~~LP~a~V~ri~K~~-l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~l 80 (103)
..+-.++..+++|++ |=++ -.|+.-..+++ ...++..+.++|+.++.+.||+.+
T Consensus 28 ~eMd~~~F~KlcKD~~liDg----k~~T~tdvDIi---------------F~KvK~k~~rkI~feqF~~aL~~l 82 (184)
T 2jrf_A 28 QEMNGKNWAKLCKDCKVADG----KSVTGTDVDIV---------------FSKVKGKSARVINYEEFKKALEEL 82 (184)
T ss_dssp SEEEHHHHHHHHHHTTCCCS----SSSCHHHHHHH---------------HHHHCCSCCSEEEHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHcCCccC----CCCChhhcchh---------------hheeccCcceeecHHHHHHHHHHH
Confidence 356677888999887 2222 24554444432 222344556778888888888754
No 194
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=21.69 E-value=78 Score=25.44 Aligned_cols=49 Identities=6% Similarity=0.007 Sum_probs=35.3
Q ss_pred cccHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhc
Q psy13691 32 NVSKDVRLAAGKAASL------------------FILHLTTEALSIANEKNRKTLSGVDVIEGVKQI 80 (103)
Q Consensus 32 ~iskda~~~l~~~~~~------------------Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~l 80 (103)
.+++++...|.+.... -+..+...|...|.-.+|.+|+.+||..|++-+
T Consensus 521 ~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~ 587 (595)
T 3f9v_A 521 KITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIM 587 (595)
T ss_dssp CCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 5777777777665322 133455667778888999999999999998643
No 195
>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A
Probab=21.48 E-value=67 Score=19.22 Aligned_cols=24 Identities=17% Similarity=0.063 Sum_probs=19.7
Q ss_pred cChhhHHHhhhhcCchHHHHHHHH
Q psy13691 68 LSGVDVIEGVKQIGFEVIIEILGK 91 (103)
Q Consensus 68 I~~eDV~~Al~~lgf~~~~~~l~~ 91 (103)
-+.++|..-|+.+|++.|.+....
T Consensus 21 ~~~~~V~~WL~~lgL~qY~~~F~~ 44 (82)
T 3hil_A 21 IPYRTVSEWLESIRMKRYILHFHS 44 (82)
T ss_dssp CCCSSHHHHHHHTTCGGGHHHHHH
T ss_pred cchhHHHHHHHhCCHHHHHHHHHH
Confidence 456799999999999999986553
No 196
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=21.22 E-value=1.2e+02 Score=20.64 Aligned_cols=14 Identities=14% Similarity=0.321 Sum_probs=11.6
Q ss_pred CcChhhHHHhhhhc
Q psy13691 67 TLSGVDVIEGVKQI 80 (103)
Q Consensus 67 TI~~eDV~~Al~~l 80 (103)
-|+|+|+++|.+.+
T Consensus 59 lISp~Dl~~A~~~l 72 (169)
T 1u5t_B 59 LISPMEMREACERF 72 (169)
T ss_dssp CCCHHHHHHHHTTT
T ss_pred ccCHHHHHHHHHHH
Confidence 69999999998743
No 197
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=21.09 E-value=2e+02 Score=22.73 Aligned_cols=51 Identities=10% Similarity=0.089 Sum_probs=34.5
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcCchHHHHHHHHHH
Q psy13691 31 INVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQIGFEVIIEILGKSY 93 (103)
Q Consensus 31 ~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~~~~~~l~~~l 93 (103)
-++++|=...|.+ |....-.++.-+|+.+++..+|+.||+.-=-..++..+
T Consensus 294 E~Lt~EEI~ELRE------------aF~~fDkDgdG~IS~eELk~aLrsLG~~~TeeEI~~Lf 344 (440)
T 3u0k_A 294 DQLTEEQIAEFKE------------AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMI 344 (440)
T ss_dssp BCCCHHHHHHHHH------------HHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred hhhhHHHHHHHHH------------HHHHHcCCCCCEECHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 5778877766655 55555667788888888888888888753233333333
No 198
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=21.02 E-value=1.3e+02 Score=17.22 Aligned_cols=29 Identities=7% Similarity=-0.081 Sum_probs=21.5
Q ss_pred HHHHHHHhCCCCCcChhhHHHhhhhcCch
Q psy13691 55 EALSIANEKNRKTLSGVDVIEGVKQIGFE 83 (103)
Q Consensus 55 ~A~~~a~~~~RkTI~~eDV~~Al~~lgf~ 83 (103)
.+....-.++.-.|+.+++..+|..+|+.
T Consensus 28 ~~F~~~D~d~~G~i~~~el~~~l~~~g~~ 56 (105)
T 1wlz_A 28 QEFENFDTMKTNTISREEFRAICNRRVQI 56 (105)
T ss_dssp HHHHHHCTTCSSCBCHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHHHhCCC
Confidence 35555556677788888888888888764
No 199
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Probab=20.96 E-value=1.6e+02 Score=18.33 Aligned_cols=29 Identities=10% Similarity=0.093 Sum_probs=23.4
Q ss_pred HHHHHHHhCCCCCcChhhHHHhhhhcCch
Q psy13691 55 EALSIANEKNRKTLSGVDVIEGVKQIGFE 83 (103)
Q Consensus 55 ~A~~~a~~~~RkTI~~eDV~~Al~~lgf~ 83 (103)
.+....-.++.-.|+.+++..++..+|..
T Consensus 113 ~~F~~~D~d~~G~Is~~El~~~l~~~g~~ 141 (191)
T 1uhk_A 113 ALFDIVDKDQNGAITLDEWKAYTKAAGII 141 (191)
T ss_dssp HHHHHHCTTCSSEECHHHHHHHHHHHTSC
T ss_pred HHHHHhcCCCCCcCcHHHHHHHHHHhCCC
Confidence 56666667788889999999999988853
No 200
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=20.88 E-value=44 Score=18.86 Aligned_cols=19 Identities=5% Similarity=0.237 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHhhCCC
Q psy13691 7 DLNLPSAIIQRLIKEALPK 25 (103)
Q Consensus 7 d~~LP~a~V~ri~K~~l~~ 25 (103)
.+.+|+++|.|+++.--..
T Consensus 34 ~lglsr~tv~~~l~~L~~~ 52 (67)
T 2heo_A 34 KCQVPKKTLNQVLYRLKKE 52 (67)
T ss_dssp HHCSCHHHHHHHHHHHHHT
T ss_pred HHCcCHHHHHHHHHHHHHC
Confidence 4689999999999875433
No 201
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal binding protein; NMR {Entamoeba histolytica} SCOP: a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Probab=20.81 E-value=1.3e+02 Score=17.26 Aligned_cols=22 Identities=0% Similarity=-0.034 Sum_probs=15.3
Q ss_pred HHHHHhCCCCCcChhhHHHhhh
Q psy13691 57 LSIANEKNRKTLSGVDVIEGVK 78 (103)
Q Consensus 57 ~~~a~~~~RkTI~~eDV~~Al~ 78 (103)
....-.++..+|+.++...++.
T Consensus 42 ~~~~D~~~~g~i~~~ef~~~~~ 63 (134)
T 1jfj_A 42 FKSIDADGNGEIDQNEFAKFYG 63 (134)
T ss_dssp HHHHCSSCCSEEEHHHHHHHTT
T ss_pred HHHHcCCCCCeEcHHHHHHHHH
Confidence 3444456667788888888876
No 202
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Probab=20.78 E-value=1.6e+02 Score=18.24 Aligned_cols=66 Identities=6% Similarity=0.061 Sum_probs=38.3
Q ss_pred CCcHHHHHHHHHhhCCCCCcccccccHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcCch
Q psy13691 9 NLPSAIIQRLIKEALPKDAEGKINVSKD-VRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQIGFE 83 (103)
Q Consensus 9 ~LP~a~V~ri~K~~l~~~~~~~~~iskd-a~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~ 83 (103)
.++...+.++++..-.++ + -.|+-+ ...++... --...+....-.++.-.|+.+++..+|..+|..
T Consensus 40 ~~~~~~~~~l~~~~D~~~-~--g~i~~~ef~~~~~~~------~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~ 106 (172)
T 2znd_A 40 PFNPVTVRSIISMFDREN-K--AGVNFSEFTGVWKYI------TDWQNVFRTYDRDNSGMIDKNELKQALSGFGYR 106 (172)
T ss_dssp CCCHHHHHHHHHHHCSSS-S--SEECHHHHHHHHHHH------HHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHhCCCC-C--CcCCHHHHHHHHHHH------HHHHHHHHHHCCCCCCccCHHHHHHHHHHcCCC
Confidence 456667777777653222 2 245432 22222211 112345555556777889999999999988864
No 203
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=20.73 E-value=71 Score=18.75 Aligned_cols=22 Identities=14% Similarity=0.150 Sum_probs=17.5
Q ss_pred hhhHHHhhhhcCchHHHHHHHH
Q psy13691 70 GVDVIEGVKQIGFEVIIEILGK 91 (103)
Q Consensus 70 ~eDV~~Al~~lgf~~~~~~l~~ 91 (103)
..+|..-|+.+|+++|.+....
T Consensus 7 ~~~V~~WL~~lgL~~Y~~~F~~ 28 (81)
T 1ucv_A 7 GLTVGDWLDSIRMGRYRDHFAA 28 (81)
T ss_dssp CSBHHHHHHHTTCGGGHHHHHH
T ss_pred cchHHHHHHHCCCHHHHHHHHH
Confidence 4678889999999999876543
No 204
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Probab=20.73 E-value=1.3e+02 Score=17.18 Aligned_cols=67 Identities=7% Similarity=0.045 Sum_probs=38.6
Q ss_pred CCcHHHHHHHHHhhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcC
Q psy13691 9 NLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQIG 81 (103)
Q Consensus 9 ~LP~a~V~ri~K~~l~~~~~~~~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lg 81 (103)
.++...|.++++..=++ -.|+-+--..+......-.. -...+....-.++.-.|+.+++..+|..+|
T Consensus 5 ~~t~~e~~~~~~~~d~~-----g~i~~~eF~~~~~~~~~~~~-~l~~~F~~~D~d~~G~I~~~el~~~l~~~~ 71 (108)
T 1rro_A 5 ILSAEDIAAALQECQDP-----DTFEPQKFFQTSGLSKMSAS-QVKDIFRFIDNDQSGYLDGDELKYFLQKFQ 71 (108)
T ss_dssp TSCHHHHHHHHHHTCST-----TCCCHHHHHHHHSGGGSCHH-HHHHHHHHHCTTCSSEECTHHHHTGGGGTC
T ss_pred cCCHHHHHHHHHHccCC-----CCcCHHHHHHHHhcCcccHH-HHHHHHHHhCCCCCCcCCHHHHHHHHHHHh
Confidence 46778889999886322 24554322211110000001 113455555567778999999999999984
No 205
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=20.51 E-value=1.7e+02 Score=18.41 Aligned_cols=49 Identities=10% Similarity=0.096 Sum_probs=31.9
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChhhHHHhhhhcCchHHHHHHHH
Q psy13691 31 INVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSGVDVIEGVKQIGFEVIIEILGK 91 (103)
Q Consensus 31 ~~iskda~~~l~~~~~~Fi~~lt~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~~~~~~l~~ 91 (103)
.++|++-..-|.+ |...--.+|--+|+.+++..+|+.||+.---..+..
T Consensus 8 ~~Lt~~qi~elk~------------~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~ 56 (153)
T 3i5g_B 8 VKLSQRQMQELKE------------AFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNA 56 (153)
T ss_dssp TTCCHHHHHHHHH------------HHHHHCCSTTSCCCHHHHHHHHHHTTSCCCHHHHHH
T ss_pred cCCCHHHHHHHHH------------HHHHHCCCCCCeEcHHHHHHHHHHcCCCccHHHHHH
Confidence 5677766655544 444445566778888888888888887644444433
No 206
>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens}
Probab=20.37 E-value=67 Score=19.08 Aligned_cols=23 Identities=22% Similarity=0.143 Sum_probs=16.6
Q ss_pred ChhhHHHhhhhcCchHHHHHHHH
Q psy13691 69 SGVDVIEGVKQIGFEVIIEILGK 91 (103)
Q Consensus 69 ~~eDV~~Al~~lgf~~~~~~l~~ 91 (103)
..++|..-|+.+|+++|.+....
T Consensus 15 ~~~~V~~WL~~lgL~qY~~~F~~ 37 (82)
T 2kso_A 15 SHMTVSEWLESIKMQQYTEHFMA 37 (82)
T ss_dssp ---CHHHHHHHTTCTTHHHHHHH
T ss_pred CcchHHHHHHHCCCHHHHHHHHH
Confidence 35688889999999999876544
No 207
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=20.37 E-value=1.8e+02 Score=18.63 Aligned_cols=30 Identities=13% Similarity=0.254 Sum_probs=23.1
Q ss_pred HHHHHHHHhCCCCCcChhhHHHhhhhcCch
Q psy13691 54 TEALSIANEKNRKTLSGVDVIEGVKQIGFE 83 (103)
Q Consensus 54 ~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~ 83 (103)
..+....-.++.-.|+.+++..++..+|..
T Consensus 96 ~~~F~~~D~d~~G~i~~~e~~~~l~~~g~~ 125 (191)
T 1y1x_A 96 REGFRKRDSSGDGRLDSNEVRAALLSSGYQ 125 (191)
T ss_dssp HHHHHHHCTTSSSCBCHHHHHHHHHTTSCC
T ss_pred HHHHHHhCCCCCCeEcHHHHHHHHHHhCCC
Confidence 445566666777899999999999988753
No 208
>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A
Probab=20.24 E-value=45 Score=17.39 Aligned_cols=16 Identities=13% Similarity=0.403 Sum_probs=13.4
Q ss_pred cChhhHHHhhhhcCch
Q psy13691 68 LSGVDVIEGVKQIGFE 83 (103)
Q Consensus 68 I~~eDV~~Al~~lgf~ 83 (103)
++.+++..+++.+||.
T Consensus 46 ~~~~~i~~~i~~~Gy~ 61 (66)
T 2roe_A 46 ADPKALVQAVEEEGYK 61 (66)
T ss_dssp CCHHHHHHHHHTTTCE
T ss_pred CCHHHHHHHHHHcCCC
Confidence 5778899999999985
No 209
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=20.24 E-value=1.2e+02 Score=18.05 Aligned_cols=16 Identities=0% Similarity=-0.027 Sum_probs=8.4
Q ss_pred CCCCCcChhhHHHhhh
Q psy13691 63 KNRKTLSGVDVIEGVK 78 (103)
Q Consensus 63 ~~RkTI~~eDV~~Al~ 78 (103)
++..+|+.++.+.++.
T Consensus 54 ~~~g~i~~~eF~~~~~ 69 (142)
T 2bl0_C 54 TGNGKIQFPEFLSMMG 69 (142)
T ss_dssp TCSSEEEHHHHHHHHH
T ss_pred CCCCeeeHHHHHHHHH
Confidence 3444555555555554
No 210
>2lnz_A Ubiquitin-like protein MDY2; dimerization, homodimerization, protein binding; NMR {Saccharomyces cerevisiae}
Probab=20.11 E-value=1.4e+02 Score=17.39 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=18.4
Q ss_pred ccCCCCcHHHHHHHHHhhCCCC
Q psy13691 5 LDDLNLPSAIIQRLIKEALPKD 26 (103)
Q Consensus 5 ~~d~~LP~a~V~ri~K~~l~~~ 26 (103)
..++.+|...|..+.++.+.++
T Consensus 24 p~~l~VPWd~Ie~lL~n~l~n~ 45 (64)
T 2lnz_A 24 PQELTVPWDDIEALLKNNFEND 45 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHTTTC
T ss_pred CccccCCHHHHHHHHHHHhcCh
Confidence 4578999999999999998654
No 211
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.04 E-value=87 Score=19.36 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=19.2
Q ss_pred CCCcChhhHHHhhhhcCchHHH
Q psy13691 65 RKTLSGVDVIEGVKQIGFEVII 86 (103)
Q Consensus 65 RkTI~~eDV~~Al~~lgf~~~~ 86 (103)
=++++.++|..-|.-+|+++++
T Consensus 15 Ls~lSv~EVs~~Lr~igL~e~v 36 (84)
T 2dkz_A 15 LSGLSIEEVSKSLRFIGLSEDV 36 (84)
T ss_dssp CSSCCHHHHHHHGGGTCCCHHH
T ss_pred hhhcCHHHHHHHHHHcCCcHHH
Confidence 3689999999999999999764
No 212
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Probab=20.02 E-value=1.5e+02 Score=18.84 Aligned_cols=25 Identities=12% Similarity=0.369 Sum_probs=16.7
Q ss_pred HHHhCCCCCcChhhHHHhhhhcCch
Q psy13691 59 IANEKNRKTLSGVDVIEGVKQIGFE 83 (103)
Q Consensus 59 ~a~~~~RkTI~~eDV~~Al~~lgf~ 83 (103)
..-.++.-+|+.+++..+|..+|+.
T Consensus 45 ~~D~d~~G~i~~~e~~~~l~~~~~~ 69 (204)
T 3e3r_A 45 QLDRDGSRSLDADEFRQGLAKLGLV 69 (204)
T ss_dssp HHCTTCCSSBCHHHHHHHHHTTTCC
T ss_pred HHccCCCCCcCHHHHHHHHHHcCCC
Confidence 3344566677777777777777765
Done!