RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13691
(103 letters)
>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 89
Score = 65.6 bits (160), Expect = 2e-16
Identities = 29/79 (36%), Positives = 54/79 (68%), Gaps = 4/79 (5%)
Query: 11 PSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLSG 70
P+A+I RLIKEALP+ +VSK+ R A +AAS+F + +T+ + ++A+++N KT++
Sbjct: 1 PNAVIGRLIKEALPES----ASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITA 56
Query: 71 VDVIEGVKQIGFEVIIEIL 89
D+++ + ++ FE + L
Sbjct: 57 KDILQTLTELDFESFVPSL 75
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 66.5 bits (162), Expect = 4e-16
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 6 DDLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNR 65
DDL +P A I ++IKE LP + V+ D R + FI +++EA I N+ +
Sbjct: 1 DDLTIPRAAINKMIKETLPN-----VRVANDARELVVNCCTEFIHLISSEANEICNKSEK 55
Query: 66 KTLSGVDVIEGVKQIGFEVIIEIL 89
KT+S VI+ ++ +GF I +
Sbjct: 56 KTISPEHVIQALESLGFGSYISEV 79
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta
(Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 60.6 bits (147), Expect = 2e-14
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 8 LNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKT 67
+ LP A + R++K A+P+ ++KD + + S FI +T+EA +++ RKT
Sbjct: 1 IYLPIANVARIMKNAIPQT----GKIAKDAKECVQECVSEFISFITSEASERCHQEKRKT 56
Query: 68 LSGVDVIEGVKQIGFEVIIEIL 89
++G D++ + +GF+ +E L
Sbjct: 57 INGEDILFAMSTLGFDSYVEPL 78
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus
horikoshii) [TaxId: 53953]}
Length = 66
Score = 47.4 bits (113), Expect = 2e-09
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 10 LPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLS 69
LP A + RLI++A + VS+ + + + + +A+ A RKT+
Sbjct: 3 LPIAPVDRLIRKAGAE------RVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVK 56
Query: 70 GVDVIEGVK 78
D+ +K
Sbjct: 57 VEDIKLAIK 65
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus
fervidus, histone A [TaxId: 2180]}
Length = 68
Score = 46.3 bits (110), Expect = 6e-09
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 10 LPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLS 69
LP A I R+IK A + VS D R+A K + +EA+ +A RKT+
Sbjct: 4 LPIAPIGRIIKNAGAE------RVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIK 57
Query: 70 GVDVIEGVKQ 79
D+ K
Sbjct: 58 AEDIELARKM 67
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit
gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 43.3 bits (102), Expect = 1e-07
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 10 LPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLS 69
LP A I++++K E +S + + KAA +FI LT A + R+TL
Sbjct: 1 LPLARIKKIMKLD-----EDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQ 55
Query: 70 GVDVIEGVKQIG-FEVIIEILGK 91
D+ + + F+ +I+I+ +
Sbjct: 56 RNDIAMAITKFDQFDFLIDIVPR 78
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 42.4 bits (100), Expect = 2e-07
Identities = 14/69 (20%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 10 LPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLS 69
P A I+++++ E V+ V + +A LF+ L +A + +N KT++
Sbjct: 3 FPPARIKKIMQTD-----EEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMT 57
Query: 70 GVDVIEGVK 78
+ + ++
Sbjct: 58 TSHLKQCIE 66
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus
kandleri [TaxId: 2320]}
Length = 151
Score = 40.2 bits (94), Expect = 6e-06
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Query: 3 ESLDDLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANE 62
E D A ++R++K A + S D K L +A A+E
Sbjct: 73 EDYDGELFGRATVRRILKRAGIE------RASSDAVDLYNKLICRATEELGEKAAEYADE 126
Query: 63 KNRKTLSGVDVIEGVKQ 79
RKT+ G DV + +
Sbjct: 127 DGRKTVQGEDVEKAITY 143
Score = 37.8 bits (88), Expect = 4e-05
Identities = 13/74 (17%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 10 LPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTLS 69
LP A I+R+ ++ + + +S+D + ++ A S+ + +KTL
Sbjct: 2 LPKAAIERIFRQGIGER-----RLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLM 56
Query: 70 GVDVIEGVKQIGFE 83
+ + E
Sbjct: 57 EEHLKALADVLMVE 70
>d2byka1 a.22.1.3 (A:29-100) Chrac-16 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 72
Score = 32.4 bits (74), Expect = 0.001
Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 32 NVSKDVRLAAGKAASLFILHLTTEALSIANEKN-RKTLSGVDVIEGVKQIG-FEVIIEIL 89
++ +V K LF+ HL A + + + L + + V + E +++I+
Sbjct: 9 LITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLLQIV 68
Query: 90 GK 91
+
Sbjct: 69 PQ 70
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog
(Xenopus laevis) [TaxId: 8355]}
Length = 82
Score = 29.0 bits (65), Expect = 0.029
Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 9 NLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANEKNRKTL 68
+ I+RL + G +S + +F+ ++ +A++ RKT+
Sbjct: 9 GITKPAIRRLARRG------GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTV 62
Query: 69 SGVDVIEGVKQIG 81
+ +DV+ +K+ G
Sbjct: 63 TAMDVVYALKRQG 75
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC
{Human(Homo sapiens), E2 S [TaxId: 9606]}
Length = 151
Score = 26.3 bits (57), Expect = 0.62
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 9 NLPSAIIQRLIKE 21
NLP II+ + KE
Sbjct: 2 NLPPHIIRLVYKE 14
>d1bh9b_ a.22.1.3 (B:) TAF(II)28 {Human (Homo sapiens) [TaxId:
9606]}
Length = 89
Score = 23.5 bits (51), Expect = 3.5
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 3 ESLDDLNLPSAIIQRLIKEALPKDAEGKINVSKDVRLAAGKAASLFILHLTTEALSIANE 62
E P A I+RLI+ +VS++V +A + +F+ + EAL + +
Sbjct: 10 EMYRRSAFPKAAIKRLIQSITG------TSVSQNVVIAMSGISKVFVGEVVEEALDVCEK 63
Query: 63 KN 64
Sbjct: 64 WG 65
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.132 0.338
Gapped
Lambda K H
0.267 0.0565 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 340,188
Number of extensions: 13397
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 21
Length of query: 103
Length of database: 2,407,596
Length adjustment: 64
Effective length of query: 39
Effective length of database: 1,528,876
Effective search space: 59626164
Effective search space used: 59626164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.3 bits)