BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13692
(592 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GK1|A Chain A, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|C Chain C, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|E Chain E, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|G Chain G, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GJX|A Chain A, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|D Chain D, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|E Chain E, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|H Chain H, Crystallographic Structure Of Human Beta-Hexosaminidase A
Length = 507
Score = 391 bits (1005), Expect = e-109, Method: Compositional matrix adjust.
Identities = 215/498 (43%), Positives = 298/498 (59%), Gaps = 39/498 (7%)
Query: 42 FLFKVSGKS---CDILEDAILRYTEIL--KTNWRNLTKFDSVVTAPNIVGKTIKLKIRLL 96
F + VS + C +L++A RY ++L +W P + GK L+ +L
Sbjct: 24 FQYDVSSAAQPGCSVLDEAFQRYRDLLFGSGSWPR----------PYLTGKRHTLEKNVL 73
Query: 97 ------NECEKYPHIDMDEKYTLEIKNSSCLLTSQSIWGILRGLETFSQLPIPAPNGDQL 150
C + P ++ E YTL I + CLL S+++WG LRGLETFSQL + G
Sbjct: 74 VVSVVTPGCNQLPTLESVENYTLTINDDQCLLLSETVWGALRGLETFSQLVWKSAEGTFF 133
Query: 151 IIRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYE 210
I + + IEDFP+FPHRGLL+D SRHYLP+ +I LD+M+YNKLNV HWHLVDD SFPYE
Sbjct: 134 INKTE-IEDFPRFPHRGLLLDTSRHYLPLSSILDTLDVMAYNKLNVFHWHLVDDPSFPYE 192
Query: 211 SKKFPSLSLKGAFGP-DAIYTEKMIKNVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIH 269
S FP L KG++ P IYT + +K VIEYARLRGIRV+ E DTPGHT S PG+P +
Sbjct: 193 SFTFPELMRKGSYNPVTHIYTAQDVKEVIEYARLRGIRVLAEFDTPGHTLSWGPGIPGLL 252
Query: 270 CHCPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQNPE 329
C E GP++P+ N T +F+ F E+ FP+ Y+HLGGDEVDF CW+ NPE
Sbjct: 253 TPCYSGSEPSGTFGPVNPSLNNTYEFMSTFFLEVSSVFPDFYLHLGGDEVDFTCWKSNPE 312
Query: 330 IKAFMSTRQW--DGPQLQSYYMQYLLKAIKTIRKRSVVWEEVFQDWKNVNGDAQAMSMDK 387
I+ FM + + D QL+S+Y+Q LL + + K VVW+EVF + + +
Sbjct: 313 IQDFMRKKGFGEDFKQLESFYIQTLLDIVSSYGKGYVVWQEVFDN---------KVKIQP 363
Query: 388 DTIVQVWRGGGLEGASAAVKRVVSAGYKVINSIGWYLDNLEQ--EFETYHGIRVGSIDLT 445
DTI+QVWR ++ V AG++ + S WYL+ + +++ ++ + + + T
Sbjct: 364 DTIIQVWREDIPVNYMKELELVTKAGFRALLSAPWYLNRISYGPDWKDFYVVEPLAFEGT 423
Query: 446 PEEKKLFLGGEACMWGEKVDETNIESRVWPRACAAAEHLWSSPQPSNNT--KNRITEHVC 503
PE+K L +GGEACMWGE VD TN+ R+WPRA A AE LWS+ S+ T R++ C
Sbjct: 424 PEQKALVIGGEACMWGEYVDNTNLVPRLWPRAGAVAERLWSNKLTSDLTFAYERLSHFRC 483
Query: 504 RLKRRNVQAAPVYDISYC 521
L RR VQA P+ ++ +C
Sbjct: 484 ELLRRGVQAQPL-NVGFC 500
>pdb|1O7A|A Chain A, Human Beta-Hexosaminidase B
pdb|1O7A|B Chain B, Human Beta-Hexosaminidase B
pdb|1O7A|C Chain C, Human Beta-Hexosaminidase B
pdb|1O7A|D Chain D, Human Beta-Hexosaminidase B
pdb|1O7A|E Chain E, Human Beta-Hexosaminidase B
pdb|1O7A|F Chain F, Human Beta-Hexosaminidase B
Length = 515
Score = 389 bits (998), Expect = e-108, Method: Compositional matrix adjust.
Identities = 206/486 (42%), Positives = 288/486 (59%), Gaps = 28/486 (5%)
Query: 46 VSGKSCDILEDAILRYTEILKTNWR---NLTKFDSVVTAPNIVGKTIKLKIRLLNECEKY 102
+G SC +LE+A RY + ++ +F + ++ + I L +EC+ +
Sbjct: 45 TAGPSCTLLEEAFRRYHGYIFGFYKWHHEPAEFQAKTQVQQLL-----VSITLQSECDAF 99
Query: 103 PHIDMDEKYTLEIKNSSCLLTSQSIWGILRGLETFSQLPIPAPNGDQLIIRVQTIEDFPQ 162
P+I DE YTL +K +L + +WG LRGLETFSQL G I TI D P+
Sbjct: 100 PNISSDESYTLLVKEPVAVLKANRVWGALRGLETFSQLVYQDSYG-TFTINESTIIDSPR 158
Query: 163 FPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGA 222
F HRG+L+D SRHYLP+K I K LD M++NK NVLHWH+VDDQSFPY+S FP LS KG+
Sbjct: 159 FSHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGS 218
Query: 223 FGPDAIYTEKMIKNVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRVEGKTFV 282
+ +YT ++ VIEYARLRGIRV+PE DTPGHT S G + C R
Sbjct: 219 YSLSHVYTPNDVRMVIEYARLRGIRVLPEFDTPGHTLSWGKGQKDLLTPCYSRQNKLDSF 278
Query: 283 GPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQNPEIKAFMSTRQW--D 340
GP++PT N T F+ F E+ + FP+ ++HLGGDEV+F CWE NP+I+ FM + + D
Sbjct: 279 GPINPTLNTTYSFLTTFFKEISEVFPDQFIHLGGDEVEFKCWESNPKIQDFMRQKGFGTD 338
Query: 341 GPQLQSYYMQYLLKAIKTIRKRSVVWEEVFQDWKNVNGDAQAMSMDKDTIVQVWRGGGLE 400
+L+S+Y+Q +L I TI K S+VW+EVF D + TIV+VW+
Sbjct: 339 FKKLESFYIQKVLDIIATINKGSIVWQEVFDD---------KAKLAPGTIVEVWKDSAY- 388
Query: 401 GASAAVKRVVSAGYKVINSIGWYLDNLE--QEFETYHGIRVGSIDLTPEEKKLFLGGEAC 458
+ RV ++G+ VI S WYLD + Q++ Y+ + T ++K+LF+GGEAC
Sbjct: 389 --PEELSRVTASGFPVILSAPWYLDLISYGQDWRKYYKVEPLDFGGTQKQKQLFIGGEAC 446
Query: 459 MWGEKVDETNIESRVWPRACAAAEHLWSSP--QPSNNTKNRITEHVCRLKRRNVQAAPVY 516
+WGE VD TN+ R+WPRA A E LWSS + ++ +R+T H CR+ R + A P+Y
Sbjct: 447 LWGEYVDATNLTPRLWPRASAVGERLWSSKDVRDMDDAYDRLTRHRCRMVERGIAAQPLY 506
Query: 517 DISYCS 522
YC+
Sbjct: 507 -AGYCN 511
>pdb|3LMY|A Chain A, The Crystal Structure Of Beta-Hexosaminidase B In Complex
With Pyrimethamine
pdb|3LMY|B Chain B, The Crystal Structure Of Beta-Hexosaminidase B In Complex
With Pyrimethamine
Length = 556
Score = 388 bits (997), Expect = e-108, Method: Compositional matrix adjust.
Identities = 206/485 (42%), Positives = 288/485 (59%), Gaps = 28/485 (5%)
Query: 47 SGKSCDILEDAILRYTEILKTNWR---NLTKFDSVVTAPNIVGKTIKLKIRLLNECEKYP 103
+G SC +LE+A RY + ++ +F + ++ + I L +EC+ +P
Sbjct: 87 AGPSCTLLEEAFRRYHGYIFGFYKWHHEPAEFQAKTQVQQLL-----VSITLQSECDAFP 141
Query: 104 HIDMDEKYTLEIKNSSCLLTSQSIWGILRGLETFSQLPIPAPNGDQLIIRVQTIEDFPQF 163
+I DE YTL +K +L + +WG LRGLETFSQL G I TI D P+F
Sbjct: 142 NISSDESYTLLVKEPVAVLKANRVWGALRGLETFSQLVYQDSYG-TFTINESTIIDSPRF 200
Query: 164 PHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAF 223
HRG+L+D SRHYLP+K I K LD M++NK NVLHWH+VDDQSFPY+S FP LS KG++
Sbjct: 201 SHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGSY 260
Query: 224 GPDAIYTEKMIKNVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRVEGKTFVG 283
+YT ++ VIEYARLRGIRV+PE DTPGHT S G + C R G
Sbjct: 261 SLSHVYTPNDVRMVIEYARLRGIRVLPEFDTPGHTLSWGKGQKDLLTPCYSRQNKLDSFG 320
Query: 284 PLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQNPEIKAFMSTRQW--DG 341
P++PT N T F+ F E+ + FP+ ++HLGGDEV+F CWE NP+I+ FM + + D
Sbjct: 321 PINPTLNTTYSFLTTFFKEISEVFPDQFIHLGGDEVEFKCWESNPKIQDFMRQKGFGTDF 380
Query: 342 PQLQSYYMQYLLKAIKTIRKRSVVWEEVFQDWKNVNGDAQAMSMDKDTIVQVWRGGGLEG 401
+L+S+Y+Q +L I TI K S+VW+EVF D + TIV+VW+
Sbjct: 381 KKLESFYIQKVLDIIATINKGSIVWQEVFDD---------KAKLAPGTIVEVWKDSAY-- 429
Query: 402 ASAAVKRVVSAGYKVINSIGWYLDNLE--QEFETYHGIRVGSIDLTPEEKKLFLGGEACM 459
+ RV ++G+ VI S WYLD + Q++ Y+ + T ++K+LF+GGEAC+
Sbjct: 430 -PEELSRVTASGFPVILSAPWYLDLISYGQDWRKYYKVEPLDFGGTQKQKQLFIGGEACL 488
Query: 460 WGEKVDETNIESRVWPRACAAAEHLWSSP--QPSNNTKNRITEHVCRLKRRNVQAAPVYD 517
WGE VD TN+ R+WPRA A E LWSS + ++ +R+T H CR+ R + A P+Y
Sbjct: 489 WGEYVDATNLTPRLWPRASAVGERLWSSKDVRDMDDAYDRLTRHRCRMVERGIAAQPLY- 547
Query: 518 ISYCS 522
YC+
Sbjct: 548 AGYCN 552
>pdb|2GK1|B Chain B, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|D Chain D, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|F Chain F, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|H Chain H, X-Ray Crystal Structure Of Ngt-Bound Hexa
Length = 503
Score = 388 bits (997), Expect = e-108, Method: Compositional matrix adjust.
Identities = 206/486 (42%), Positives = 288/486 (59%), Gaps = 28/486 (5%)
Query: 46 VSGKSCDILEDAILRYTEILKTNWR---NLTKFDSVVTAPNIVGKTIKLKIRLLNECEKY 102
+G SC +LE+A RY + ++ +F + ++ + I L +EC+ +
Sbjct: 37 TAGPSCTLLEEAFRRYHGYIFGFYKWHHEPAEFQAKTQVQQLL-----VSITLQSECDAF 91
Query: 103 PHIDMDEKYTLEIKNSSCLLTSQSIWGILRGLETFSQLPIPAPNGDQLIIRVQTIEDFPQ 162
P+I DE YTL +K +L + +WG LRGLETFSQL G I TI D P+
Sbjct: 92 PNISSDESYTLLVKEPVAVLKANRVWGALRGLETFSQLVYQDSYG-TFTINESTIIDSPR 150
Query: 163 FPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGA 222
F HRG+L+D SRHYLP+K I K LD M++NK NVLHWH+VDDQSFPY+S FP LS KG+
Sbjct: 151 FSHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGS 210
Query: 223 FGPDAIYTEKMIKNVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRVEGKTFV 282
+ +YT ++ VIEYARLRGIRV+PE DTPGHT S G + C R
Sbjct: 211 YSLSHVYTPNDVRMVIEYARLRGIRVLPEFDTPGHTLSWGKGQKDLLTPCYSRQNKLDSF 270
Query: 283 GPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQNPEIKAFMSTRQW--D 340
GP++PT N T F+ F E+ + FP+ ++HLGGDEV+F CWE NP+I+ FM + + D
Sbjct: 271 GPINPTLNTTYSFLTTFFKEISEVFPDQFIHLGGDEVEFKCWESNPKIQDFMRQKGFGTD 330
Query: 341 GPQLQSYYMQYLLKAIKTIRKRSVVWEEVFQDWKNVNGDAQAMSMDKDTIVQVWRGGGLE 400
+L+S+Y+Q +L I TI K S+VW+EVF D + TIV+VW+
Sbjct: 331 FKKLESFYIQKVLDIIATINKGSIVWQEVFDD---------KAKLAPGTIVEVWKDSAY- 380
Query: 401 GASAAVKRVVSAGYKVINSIGWYLDNLE--QEFETYHGIRVGSIDLTPEEKKLFLGGEAC 458
+ RV ++G+ VI S WYLD + Q++ Y+ + T ++K+LF+GGEAC
Sbjct: 381 --PEELSRVTASGFPVILSAPWYLDLISYGQDWRKYYKVEPLDFGGTQKQKQLFIGGEAC 438
Query: 459 MWGEKVDETNIESRVWPRACAAAEHLWSSP--QPSNNTKNRITEHVCRLKRRNVQAAPVY 516
+WGE VD TN+ R+WPRA A E LWSS + ++ +R+T H CR+ R + A P+Y
Sbjct: 439 LWGEYVDATNLTPRLWPRASAVGERLWSSKDVRDMDDAYDRLTRHRCRMVERGIAAQPLY 498
Query: 517 DISYCS 522
YC+
Sbjct: 499 -AGYCN 503
>pdb|1NOU|A Chain A, Native Human Lysosomal Beta-Hexosaminidase Isoform B
pdb|1NOU|B Chain B, Native Human Lysosomal Beta-Hexosaminidase Isoform B
pdb|1NOW|A Chain A, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With (2r,3r,
4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride
(Galnac-Isofagomine)
pdb|1NOW|B Chain B, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With (2r,3r,
4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride
(Galnac-Isofagomine)
pdb|1NP0|A Chain A, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With Intermediate Analogue Nag-Thiazoline
pdb|1NP0|B Chain B, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With Intermediate Analogue Nag-Thiazoline
pdb|2GJX|B Chain B, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|C Chain C, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|F Chain F, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|G Chain G, Crystallographic Structure Of Human Beta-Hexosaminidase A
Length = 507
Score = 388 bits (997), Expect = e-108, Method: Compositional matrix adjust.
Identities = 206/486 (42%), Positives = 288/486 (59%), Gaps = 28/486 (5%)
Query: 46 VSGKSCDILEDAILRYTEILKTNWR---NLTKFDSVVTAPNIVGKTIKLKIRLLNECEKY 102
+G SC +LE+A RY + ++ +F + ++ + I L +EC+ +
Sbjct: 37 TAGPSCTLLEEAFRRYHGYIFGFYKWHHEPAEFQAKTQVQQLL-----VSITLQSECDAF 91
Query: 103 PHIDMDEKYTLEIKNSSCLLTSQSIWGILRGLETFSQLPIPAPNGDQLIIRVQTIEDFPQ 162
P+I DE YTL +K +L + +WG LRGLETFSQL G I TI D P+
Sbjct: 92 PNISSDESYTLLVKEPVAVLKANRVWGALRGLETFSQLVYQDSYG-TFTINESTIIDSPR 150
Query: 163 FPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGA 222
F HRG+L+D SRHYLP+K I K LD M++NK NVLHWH+VDDQSFPY+S FP LS KG+
Sbjct: 151 FSHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGS 210
Query: 223 FGPDAIYTEKMIKNVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRVEGKTFV 282
+ +YT ++ VIEYARLRGIRV+PE DTPGHT S G + C R
Sbjct: 211 YSLSHVYTPNDVRMVIEYARLRGIRVLPEFDTPGHTLSWGKGQKDLLTPCYSRQNKLDSF 270
Query: 283 GPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQNPEIKAFMSTRQW--D 340
GP++PT N T F+ F E+ + FP+ ++HLGGDEV+F CWE NP+I+ FM + + D
Sbjct: 271 GPINPTLNTTYSFLTTFFKEISEVFPDQFIHLGGDEVEFKCWESNPKIQDFMRQKGFGTD 330
Query: 341 GPQLQSYYMQYLLKAIKTIRKRSVVWEEVFQDWKNVNGDAQAMSMDKDTIVQVWRGGGLE 400
+L+S+Y+Q +L I TI K S+VW+EVF D + TIV+VW+
Sbjct: 331 FKKLESFYIQKVLDIIATINKGSIVWQEVFDD---------KAKLAPGTIVEVWKDSAY- 380
Query: 401 GASAAVKRVVSAGYKVINSIGWYLDNLE--QEFETYHGIRVGSIDLTPEEKKLFLGGEAC 458
+ RV ++G+ VI S WYLD + Q++ Y+ + T ++K+LF+GGEAC
Sbjct: 381 --PEELSRVTASGFPVILSAPWYLDLISYGQDWRKYYKVEPLDFGGTQKQKQLFIGGEAC 438
Query: 459 MWGEKVDETNIESRVWPRACAAAEHLWSSP--QPSNNTKNRITEHVCRLKRRNVQAAPVY 516
+WGE VD TN+ R+WPRA A E LWSS + ++ +R+T H CR+ R + A P+Y
Sbjct: 439 LWGEYVDATNLTPRLWPRASAVGERLWSSKDVRDMDDAYDRLTRHRCRMVERGIAAQPLY 498
Query: 517 DISYCS 522
YC+
Sbjct: 499 -AGYCN 503
>pdb|3S6T|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 V327g Complexed With Pugnac
Length = 575
Score = 222 bits (566), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 162/543 (29%), Positives = 266/543 (48%), Gaps = 75/543 (13%)
Query: 11 PTHKTLLLNFYERLVTNKQVLKDEYVGVLEPFLFKVSGKSCDILEDAILRYTEILKTNWR 70
PT + L NF ++ N +K +L+ G + D++E A R+ E
Sbjct: 50 PTGEADLGNFLSKINLNSIEVK-----ILK------KGATDDLMEAAAKRFKE------- 91
Query: 71 NLTKFDSVVTAPNIVGKTIKLKIRLLNECEKYPHIDMDEKYTLEIKNS-----SCLLTSQ 125
++ + P + GK + + + N EK ++MDE Y L + S + +T+
Sbjct: 92 QVSLAIPRGSTPKLTGKAVDVYLVNENPNEKAFSLEMDESYGLRVSPSGADRVNATITAN 151
Query: 126 SIWGILRGLETFSQLPIPAPNGDQLI-IRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKK 184
S +G+ GLET SQL + D L+ +R I D P +P+RG+L+D +R+Y I++IK+
Sbjct: 152 SFFGMRHGLETLSQLFVFDDIRDHLLMVRDVNISDKPVYPYRGILLDTARNYYSIESIKR 211
Query: 185 QLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLR 244
++ M+ KLN HWH+ D QSFP+ + K P+L GA P +YT+ I+ V+ + R
Sbjct: 212 TIEAMAAVKLNTFHWHITDSQSFPFVTTKRPNLYKFGALSPQKVYTKAAIREVVRFGLER 271
Query: 245 GIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRVE------GKTFVGPLDPTKNVTLDFVRD 298
G+RV+PE D P H G + E G+ G L+PTK+ ++ D
Sbjct: 272 GVRVLPEFDAPAHVGE---GWQDTDLTVCFKAEPWKSYCGEPPCGQLNPTKDELYQYLED 328
Query: 299 LFTELGQRFPESYV-HLGGDEVDFFCWEQNPEIKAFMSTRQWDGP-----QLQSYYMQYL 352
+++++ + F + + H+GGDEV CW + I+ FM +WD +L +Y+ Q
Sbjct: 329 IYSDMAEVFDTTDIFHMGGDEVSEACWNSSDSIQNFMMQNRWDLDKESFLKLWNYFQQKA 388
Query: 353 L-KAIKTIRKR--SVVWEEVFQDWKNVNGDAQAMSMDKDTIVQVWRGGGLEGASAAVKRV 409
KA K K+ ++W ++K+++ ++ D D I+QVW G +K +
Sbjct: 389 QDKAYKAFGKKLPLILWTSTLTNYKHID---DYLNKD-DYIIQVW----TTGVDPQIKGL 440
Query: 410 VSAGYKVINSIGWYLDNLEQEFETYHGIRVGS--------------IDLTP-----EEKK 450
+ GY++I S D L F+ +G VG+ D +P E +
Sbjct: 441 LEKGYRLIMS---NYDAL--YFDCGYGAWVGAGNNWCSPYIGWQKVYDNSPAVIALEHRD 495
Query: 451 LFLGGEACMWGEKVDETNIESRVWPRACAAAEHLWSSPQPS-NNTKNRITEHVCRLKRRN 509
LGGEA +W E+ D + ++ R+WPRA A AE LW+ P S + + R+ RL R
Sbjct: 496 QVLGGEAALWSEQSDTSTLDGRLWPRAAALAERLWAEPATSWQDAEYRMLHIRERLVRMG 555
Query: 510 VQA 512
+QA
Sbjct: 556 IQA 558
>pdb|3NSM|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 From Ostrinia Furnacalis
pdb|3NSN|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Tmg-Chitotriomycin
pdb|3OZP|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Pugnac
pdb|3OZO|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Ngt
Length = 572
Score = 220 bits (560), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 162/543 (29%), Positives = 267/543 (49%), Gaps = 75/543 (13%)
Query: 11 PTHKTLLLNFYERLVTNKQVLKDEYVGVLEPFLFKVSGKSCDILEDAILRYTEILKTNWR 70
PT + L NF ++ N +K +L+ G + D++E A R+ E
Sbjct: 47 PTGEADLGNFLSKINLNSIEVK-----ILK------KGATDDLMEAAAKRFKE------- 88
Query: 71 NLTKFDSVVTAPNIVGKTIKLKIRLLNECEKYPHIDMDEKYTLEIKNS-----SCLLTSQ 125
++ + P + GK + + + N EK ++MDE Y L + S + +T+
Sbjct: 89 QVSLAIPRGSTPKLTGKAVDVYLVNENPNEKAFSLEMDESYGLRVSPSGADRVNATITAN 148
Query: 126 SIWGILRGLETFSQLPIPAPNGDQLI-IRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKK 184
S +G+ GLET SQL + D L+ +R I D P +P+RG+L+D +R+Y I++IK+
Sbjct: 149 SFFGMRHGLETLSQLFVFDDIRDHLLMVRDVNISDKPVYPYRGILLDTARNYYSIESIKR 208
Query: 185 QLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLR 244
++ M+ KLN HWH+ D QSFP+ + K P+L GA P +YT+ I+ V+ + R
Sbjct: 209 TIEAMAAVKLNTFHWHITDSQSFPFVTTKRPNLYKFGALSPQKVYTKAAIREVVRFGLER 268
Query: 245 GIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRVE-GKTF-----VGPLDPTKNVTLDFVRD 298
G+RV+PE D P H G + E K++ G L+PTK+ ++ D
Sbjct: 269 GVRVLPEFDAPAHVGE---GWQDTDLTVCFKAEPWKSYCVEPPCGQLNPTKDELYQYLED 325
Query: 299 LFTELGQRFPESYV-HLGGDEVDFFCWEQNPEIKAFMSTRQWDGP-----QLQSYYMQYL 352
+++++ + F + + H+GGDEV CW + I+ FM +WD +L +Y+ Q
Sbjct: 326 IYSDMAEVFDTTDIFHMGGDEVSEACWNSSDSIQNFMMQNRWDLDKESFLKLWNYFQQKA 385
Query: 353 L-KAIKTIRKR--SVVWEEVFQDWKNVNGDAQAMSMDKDTIVQVWRGGGLEGASAAVKRV 409
KA K K+ ++W ++K+++ ++ D D I+QVW G +K +
Sbjct: 386 QDKAYKAFGKKLPLILWTSTLTNYKHID---DYLNKD-DYIIQVW----TTGVDPQIKGL 437
Query: 410 VSAGYKVINSIGWYLDNLEQEFETYHGIRVGS--------------IDLTP-----EEKK 450
+ GY++I S D L F+ +G VG+ D +P E +
Sbjct: 438 LEKGYRLIMS---NYDAL--YFDCGYGAWVGAGNNWCSPYIGWQKVYDNSPAVIALEHRD 492
Query: 451 LFLGGEACMWGEKVDETNIESRVWPRACAAAEHLWSSPQPS-NNTKNRITEHVCRLKRRN 509
LGGEA +W E+ D + ++ R+WPRA A AE LW+ P S + + R+ RL R
Sbjct: 493 QVLGGEAALWSEQSDTSTLDGRLWPRAAALAERLWAEPATSWQDAEYRMLHIRERLVRMG 552
Query: 510 VQA 512
+QA
Sbjct: 553 IQA 555
>pdb|3VTR|A Chain A, Crystal Structure Of Insect Beta-n-acetyl-d-hexosaminidase
Ofhex1 E328a Complexed With Tmg-chitotriomycin
Length = 572
Score = 217 bits (553), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 159/540 (29%), Positives = 262/540 (48%), Gaps = 69/540 (12%)
Query: 11 PTHKTLLLNFYERLVTNKQVLKDEYVGVLEPFLFKVSGKSCDILEDAILRYTEILKTNWR 70
PT + L NF ++ N +K +L+ G + D++E A R+ E
Sbjct: 47 PTGEADLGNFLSKINLNSIEVK-----ILK------KGATDDLMEAAAKRFKE------- 88
Query: 71 NLTKFDSVVTAPNIVGKTIKLKIRLLNECEKYPHIDMDEKYTLEIKNS-----SCLLTSQ 125
++ + P + GK + + + N EK ++MDE Y L + S + +T+
Sbjct: 89 QVSLAIPRGSTPKLTGKAVDVYLVNENPNEKAFSLEMDESYGLRVSPSGADRVNATITAN 148
Query: 126 SIWGILRGLETFSQLPIPAPNGDQLI-IRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKK 184
S +G+ GLET SQL + D L+ +R I D P +P+RG+L+D +R+Y I++IK+
Sbjct: 149 SFFGMRHGLETLSQLFVFDDIRDHLLMVRDVNISDKPVYPYRGILLDTARNYYSIESIKR 208
Query: 185 QLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLR 244
++ M+ KLN HWH+ D QSFP+ + K P+L GA P +YT+ I+ V+ + R
Sbjct: 209 TIEAMAAVKLNTNHWHITDSQSFPFVTTKRPNLYKFGALSPQKVYTKAAIREVVRFGLER 268
Query: 245 GIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRVEGKTFV---GPLDPTKNVTLDFVRDLFT 301
G+RV+PE D P H C + G L+PTK+ ++ D+++
Sbjct: 269 GVRVLPEFDAPAHVGEGWQDTDLTVCFKAEPWKSYCVAPPCGQLNPTKDELYQYLEDIYS 328
Query: 302 ELGQRFPESYV-HLGGDEVDFFCWEQNPEIKAFMSTRQWDGP-----QLQSYYMQYLL-K 354
++ + F + + H+GGDEV CW + I+ FM +WD +L +Y+ Q K
Sbjct: 329 DMAEVFDTTDIFHMGGDEVSEACWNSSDSIQNFMMQNRWDLDKESFLKLWNYFQQKAQDK 388
Query: 355 AIKTIRKR--SVVWEEVFQDWKNVNGDAQAMSMDKDTIVQVWRGGGLEGASAAVKRVVSA 412
A K K+ ++W ++K+++ ++ D D I+QVW G +K ++
Sbjct: 389 AYKAFGKKLPLILWTSTLTNYKHID---DYLNKD-DYIIQVW----TTGVDPQIKGLLEK 440
Query: 413 GYKVINSIGWYLDNLEQEFETYHGIRVGS--------------IDLTP-----EEKKLFL 453
GY++I S D L F+ +G VG+ D +P E + L
Sbjct: 441 GYRLIMS---NYDAL--YFDCGYGAWVGAGNNWCSPYIGWQKVYDNSPAVIALEHRDQVL 495
Query: 454 GGEACMWGEKVDETNIESRVWPRACAAAEHLWSSPQPS-NNTKNRITEHVCRLKRRNVQA 512
GGEA +W E+ D + ++ R+WPRA A AE LW+ P S + + R+ R R +QA
Sbjct: 496 GGEAALWSEQSDTSTLDGRLWPRAAALAERLWAEPATSWQDAEYRMLHIRERFVRMGIQA 555
>pdb|3GH4|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12
pdb|3GH5|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Glcnac
pdb|3GH7|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Galnac
pdb|3SUR|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nag-Thiazoline.
pdb|3SUS|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With
Gal-Nag-Thiazoline
pdb|3SUT|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Pugnac
pdb|3SUU|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Gal-Pugnac
pdb|3SUV|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nhac-Dnj
pdb|3SUW|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nhac-Cas
Length = 525
Score = 135 bits (341), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 123/433 (28%), Positives = 201/433 (46%), Gaps = 64/433 (14%)
Query: 108 DEKYTLEIKNSSCLLTSQSIWGILRGLETFSQLPIPAP-------NGDQLIIRVQTIEDF 160
+E Y L ++ LT+ G+ RG +T QL +PA +G Q +I I D
Sbjct: 121 NEGYDLITTSNQVTLTANKPEGVFRGNQTLLQL-LPAGIEKNTVVSGVQWVIPHSNISDK 179
Query: 161 PQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLK 220
P++ +RGL++D +RH+ + +K+Q+D+ S K+N H HL DDQ + E K +P L
Sbjct: 180 PEYEYRGLMLDVARHFFTVDEVKRQIDLASQYKINKFHMHLSDDQGWRIEIKSWPDLIEI 239
Query: 221 GA-----FGPDAIYTEKMIKNVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHR 275
G+ GP YT++ K+++ YA R I VIPEID PGHT++ +++ +
Sbjct: 240 GSKGQVGGGPGGYYTQEQFKDIVSYAAERYIEVIPEIDMPGHTNAALASYGELNPDGKRK 299
Query: 276 -VEGKTFVG--PLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQNPEIKA 332
+ T VG L P +T FV D+ +EL P Y+HLGGDE +
Sbjct: 300 AMRTDTAVGYSTLMPRAEITYQFVEDVISELAAISPSPYIHLGGDESN------------ 347
Query: 333 FMSTRQWDGPQLQSYYMQYLLKAIKTIRKRSVVWEEVFQDWKNVNGDAQAMSMDKDTIVQ 392
S +D Y+ + + K+ V W D + + A + D+++Q
Sbjct: 348 ATSAADYD------YFFGRVTAIANSYGKKVVGW-----DPSDTSSGATS-----DSVLQ 391
Query: 393 VWRGGGLEGASAAVKRVVSAGYKVINS-IGWYLDNLEQEFETYHGI---------RVGSI 442
W G +A K G KVI S YLD ++ ++ G+ R +
Sbjct: 392 NWTCSASTGTAAKAK-----GMKVIVSPANAYLD-MKYYSDSPIGLQWRGFVNTNRAYNW 445
Query: 443 DLTPEEKKL-FLGGEACMWGEK-VDETNIESRVWPRACAAAEHLWSSPQPSN--NTKNRI 498
D T K G E+ +W E V + +++ ++P+ + AE W++ N + K R+
Sbjct: 446 DPTDCIKGANIYGVESTLWTETFVTQDHLDYMLYPKLLSNAEVGWTARGDRNWDDFKERL 505
Query: 499 TEHVCRLKRRNVQ 511
EH RL+ + ++
Sbjct: 506 IEHTPRLQNKGIK 518
>pdb|1HP4|A Chain A, Crystal Structure Of Streptomyces Plicatus
Beta-N-Acetylhexosaminidase
pdb|1HP5|A Chain A, Streptomyces Plicatus Beta-N-Acetylhexosaminidase
Complexed With Intermediate Analouge Nag-Thiazoline
pdb|1JAK|A Chain A, Streptomyces Plicatus Beta-N-Acetylhexosaminidase In
Complex With (2r,
3r,4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride (Ifg)
pdb|1M01|A Chain A, Wildtype Streptomyces Plicatus Beta-Hexosaminidase In
Complex With Product (Glcnac)
Length = 512
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 112/225 (49%), Gaps = 13/225 (5%)
Query: 108 DEKYTLEIKNSSCLLTSQSIWGILRGLETFSQLPIPAPNGDQL-----IIRVQTIEDFPQ 162
DE Y L+ + +T++ G+ G++T QL PA D ++ TIED P+
Sbjct: 97 DEGYRLDSGPAGVTITARKAAGLFHGVQTLRQLLPPAVEKDSAQPGPWLVAGGTIEDTPR 156
Query: 163 FPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKG- 221
+ R ++D SRH+ + +K+ +D ++ K N LH HL DDQ + +P L+ G
Sbjct: 157 YAWRSAMLDVSRHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGG 216
Query: 222 ----AFGPDAIYTEKMIKNVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHC---PH 274
GP YT+ K ++ YA R + V+PEID PGHT++ +++C P
Sbjct: 217 STEVGGGPGGYYTKAEYKEIVRYAASRHLEVVPEIDMPGHTNAALASYAELNCDGVAPPL 276
Query: 275 RVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEV 319
K L K+VT DFV D+ EL P Y+H+GGDE
Sbjct: 277 YTGTKVGFSSLCVDKDVTYDFVDDVIGELAALTPGRYLHIGGDEA 321
>pdb|1M04|A Chain A, Mutant Streptomyces Plicatus Beta-Hexosaminidase (D313n)
In Complex With Product (Glcnac)
Length = 512
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 112/225 (49%), Gaps = 13/225 (5%)
Query: 108 DEKYTLEIKNSSCLLTSQSIWGILRGLETFSQLPIPAPNGDQL-----IIRVQTIEDFPQ 162
DE Y L+ + +T++ G+ G++T QL PA D ++ TIED P+
Sbjct: 97 DEGYRLDSGPAGVTITARKAAGLFHGVQTLRQLLPPAVEKDSAQPGPWLVAGGTIEDTPR 156
Query: 163 FPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKG- 221
+ R ++D SRH+ + +K+ +D ++ K N LH HL DDQ + +P L+ G
Sbjct: 157 YAWRSAMLDVSRHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGG 216
Query: 222 ----AFGPDAIYTEKMIKNVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHC---PH 274
GP YT+ K ++ YA R + V+PEID PGHT++ +++C P
Sbjct: 217 STEVGGGPGGYYTKAEYKEIVRYAASRHLEVVPEIDMPGHTNAALASYAELNCDGVAPPL 276
Query: 275 RVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEV 319
K L K+VT DFV D+ EL P Y+H+GG+E
Sbjct: 277 YTGTKVGFSSLCVDKDVTYDFVDDVIGELAALTPGRYLHIGGNEA 321
>pdb|1M03|A Chain A, Mutant Streptomyces Plicatus Beta-Hexosaminidase (D313a)
In Complex With Product (Glcnac)
Length = 512
Score = 122 bits (305), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 111/225 (49%), Gaps = 13/225 (5%)
Query: 108 DEKYTLEIKNSSCLLTSQSIWGILRGLETFSQLPIPAPNGDQL-----IIRVQTIEDFPQ 162
DE Y L+ + +T++ G+ G++T QL PA D ++ TIED P+
Sbjct: 97 DEGYRLDSGPAGVTITARKAAGLFHGVQTLRQLLPPAVEKDSAQPGPWLVAGGTIEDTPR 156
Query: 163 FPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKG- 221
+ R ++D SRH+ + +K+ +D ++ K N LH HL DDQ + +P L+ G
Sbjct: 157 YAWRSAMLDVSRHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGG 216
Query: 222 ----AFGPDAIYTEKMIKNVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHC---PH 274
GP YT+ K ++ YA R + V+PEID PGHT++ +++C P
Sbjct: 217 STEVGGGPGGYYTKAEYKEIVRYAASRHLEVVPEIDMPGHTNAALASYAELNCDGVAPPL 276
Query: 275 RVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEV 319
K L K+VT DFV D+ EL P Y+H+GG E
Sbjct: 277 YTGTKVGFSSLCVDKDVTYDFVDDVIGELAALTPGRYLHIGGAEA 321
>pdb|3RCN|A Chain A, Crystal Structure Of Beta-N-Acetylhexosaminidase From
Arthrobacter Aurescens
Length = 543
Score = 115 bits (287), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 125/479 (26%), Positives = 216/479 (45%), Gaps = 85/479 (17%)
Query: 93 IRLLNECEKYPHIDMDEKYTLEIKNSSCLLTSQSIWGILRGLETFSQLPIPAPNGDQLII 152
IRLL + P +D E Y LE+ ++ ++++ G G +T QL PA ++
Sbjct: 67 IRLLLD----PSLDA-EAYRLEVSDA-VVISAGGAAGAFYGAQTLLQLLGPAALRQAPVV 120
Query: 153 RVQ-------TIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQ 205
V+ ++ED P+F +RG +D +RH+ P + + +++ + +KLNVLH HL DDQ
Sbjct: 121 AVEGWSVPRVSVEDKPRFGYRGTXLDVARHFXPKDNVLRFIEVXAXHKLNVLHLHLTDDQ 180
Query: 206 SFPYESKKFPSLSLKGAFGPDA-----------------IYTEKMIKNVIEYARLRGIRV 248
+ + ++P L+ GA+ ++ YT+ ++ ++ +A R I V
Sbjct: 181 GWRXQINRYPKLTETGAWRRESSLGSWRAGVFDGRPHGGFYTQDDLREIVAFAADRHITV 240
Query: 249 IPEIDTPGHTDSMEPGMPQIH---CHCPHRVEGKTFVGPLDPTKNV---TLDFVRDLFTE 302
IPEID PGH+ + P++ VE T G + V +L+F R++ E
Sbjct: 241 IPEIDVPGHSQAAIAAYPELGAGPADGSSPVEVWTRWGINETVLEVSETSLEFYRNVLDE 300
Query: 303 LGQRFPESYVHLGGDEVDFFCWEQNPEIKAFMSTRQWDG-PQLQSYYMQYLLKAIKTIRK 361
+ + FP ++ LGGDEV W+ + + +A + D L S+++ L +K +
Sbjct: 301 VVEIFPSPWISLGGDEVPLTQWQASAQAQAKAAELGLDDVSGLHSWFVGQLALHLKHHGR 360
Query: 362 RSVVWEEVFQDWKNVNGDAQAMSMDKDTIVQVWRGGGLEGASAAVKRVVSAGYKVIN--S 419
+ VW+E+ GD + +V WR G EG A+++ GY V+
Sbjct: 361 ATSVWDEI--------GDG---GLPDGALVASWR--GYEGGIDALRK----GYDVVXCPE 403
Query: 420 IGWYLDNLEQ-------------------EFETYHGIRVGSIDLTPEEKKLFLGGEACMW 460
YLD+ + EFE G+ D LG +A +W
Sbjct: 404 HKLYLDHRQADGDDEPVPVGFVTTLQAVYEFEPLPGVE--GTDF----PGRLLGAQANIW 457
Query: 461 GEKVDE-TNIESRVWPRACAAAEHLWSSPQPSNNTK--NRIT-EHVCRLKRRNVQAAPV 515
E +D ++ +PR A +E WS+P + + R+T H+ RL+ V+ P+
Sbjct: 458 SEHLDSPRRVQFAAFPRLSAISEVFWSNPAGRDYDEFLTRLTGAHLARLEAXGVEYRPL 516
>pdb|1QBB|A Chain A, Bacterial Chitobiase Complexed With Chitobiose (Dinag)
pdb|1QBA|A Chain A, Bacterial Chitobiase, Glycosyl Hydrolase Family 20
Length = 858
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 131/315 (41%), Gaps = 41/315 (13%)
Query: 14 KTLLLNFYERLVTNKQVLKDEYVGVLE------PFLFKVSGKSCDILEDAILRYTEILKT 67
K +L+ R V+N L+ G L P KV + D+ + L + ++K
Sbjct: 162 KNILMTPASRFVSNAD-LQTLPAGALRGKIVPTPMQVKVHAQDADLRKGVALDLSTLVKP 220
Query: 68 NWRNLTKFDSVVTAP-NIVGKTIKLKIRLLNECEKYPHIDMDEKYTLEIKNSSCLLTSQS 126
+++ +++ P G IK I+ + + + Y L+I +
Sbjct: 221 AADVVSQRFALLGVPVQTNGYPIKTDIQ---PGKFKGAMAVSGAYELKIGKKEAQVIGFD 277
Query: 127 IWGILRGLETFSQLPIPAPNGDQLIIRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQL 186
G+ GL++ L P+ I D P+FP+RG+ +D +R++ A+ + L
Sbjct: 278 QAGVFYGLQSILSL---VPSDGSGKIATLDASDAPRFPYRGIFLDVARNFHKKDAVLRLL 334
Query: 187 DIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKG-----------------AFGPD--- 226
D M+ KLN H+HL DD+ + E P L+ G GPD
Sbjct: 335 DQMAAYKLNKFHFHLSDDEGWRIEIPGLPELTEVGGQRCHDLSETTCLLPQYGQGPDVYG 394
Query: 227 AIYTEKMIKNVIEYARLRGIRVIPEIDTPGHTD----SMEPGMPQIHCHCPHRVEGKTF- 281
++ + ++I+YA+ R I VIPEID P H SME ++H + E F
Sbjct: 395 GFFSRQDYIDIIKYAQARQIEVIPEIDMPAHARAAVVSMEARYKKLHAAGKEQ-EANEFR 453
Query: 282 -VGPLDPTKNVTLDF 295
V P D + ++ F
Sbjct: 454 LVDPTDTSNTTSVQF 468
>pdb|1C7S|A Chain A, Beta-N-Acetylhexosaminidase Mutant D539a Complexed With
Di- N-Acetyl-Beta-D-Glucosamine (Chitobiase)
Length = 858
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 121/288 (42%), Gaps = 38/288 (13%)
Query: 14 KTLLLNFYERLVTNKQVLKDEYVGVLE------PFLFKVSGKSCDILEDAILRYTEILKT 67
K +L+ R V+N L+ G L P KV + D+ + L + ++K
Sbjct: 162 KNILMTPASRFVSNAD-LQTLPAGALRGKIVPTPMQVKVHAQDADLRKGVALDLSTLVKP 220
Query: 68 NWRNLTKFDSVVTAP-NIVGKTIKLKIRLLNECEKYPHIDMDEKYTLEIKNSSCLLTSQS 126
+++ +++ P G IK I+ + + + Y L+I +
Sbjct: 221 AADVVSQRFALLGVPVQTNGYPIKTDIQ---PGKFKGAMAVSGAYELKIGKKEAQVIGFD 277
Query: 127 IWGILRGLETFSQLPIPAPNGDQLIIRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQL 186
G+ GL++ L P+ I D P+FP+RG+ +D +R++ A+ + L
Sbjct: 278 QAGVFYGLQSILSL---VPSDGSGKIATLDASDAPRFPYRGIFLDVARNFHKKDAVLRLL 334
Query: 187 DIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKG-----------------AFGPD--- 226
D M+ KLN H+HL DD+ + E P L+ G GPD
Sbjct: 335 DQMAAYKLNKFHFHLSDDEGWRIEIPGLPELTEVGGQRCHDLSETTCLLPQYGQGPDVYG 394
Query: 227 AIYTEKMIKNVIEYARLRGIRVIPEIDTPGHTD----SMEPGMPQIHC 270
++ + ++I+YA+ R I VIPEID P H SME ++H
Sbjct: 395 GFFSRQDYIDIIKYAQARQIEVIPEIDMPAHARAAVVSMEARYKKLHA 442
>pdb|1C7T|A Chain A, Beta-N-Acetylhexosaminidase Mutant E540d Complexed With
Di- N Acetyl-D-Glucosamine (Chitobiase)
Length = 858
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 121/288 (42%), Gaps = 38/288 (13%)
Query: 14 KTLLLNFYERLVTNKQVLKDEYVGVLE------PFLFKVSGKSCDILEDAILRYTEILKT 67
K +L+ R V+N L+ G L P KV + D+ + L + ++K
Sbjct: 162 KNILMTPASRFVSNAD-LQTLPAGALRGKIVPTPMQVKVHAQDADLRKGVALDLSTLVKP 220
Query: 68 NWRNLTKFDSVVTAP-NIVGKTIKLKIRLLNECEKYPHIDMDEKYTLEIKNSSCLLTSQS 126
+++ +++ P G IK I+ + + + Y L+I +
Sbjct: 221 AADVVSQRFALLGVPVQTNGYPIKTDIQ---PGKFKGAMAVSGAYELKIGKKEAQVIGFD 277
Query: 127 IWGILRGLETFSQLPIPAPNGDQLIIRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQL 186
G+ GL++ L P+ I D P+FP+RG+ +D +R++ A+ + L
Sbjct: 278 QAGVFYGLQSILSL---VPSDGSGKIATLDASDAPRFPYRGIFLDVARNFHKKDAVLRLL 334
Query: 187 DIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKG-----------------AFGPD--- 226
D M+ KLN H+HL DD+ + E P L+ G GPD
Sbjct: 335 DQMAAYKLNKFHFHLSDDEGWRIEIPGLPELTEVGGQRCHDLSETTCLLPQYGQGPDVYG 394
Query: 227 AIYTEKMIKNVIEYARLRGIRVIPEIDTPGHTD----SMEPGMPQIHC 270
++ + ++I+YA+ R I VIPEID P H SME ++H
Sbjct: 395 GFFSRQDYIDIIKYAQARQIEVIPEIDMPAHARAAVVSMEARYKKLHA 442
>pdb|1YHT|A Chain A, Crystal Structure Analysis Of Dispersin B
Length = 367
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 99/214 (46%), Gaps = 36/214 (16%)
Query: 167 GLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPD 226
GL++D +RH+ + IK +D +S + N LH H D +++ ES + G D
Sbjct: 20 GLMLDIARHFYSPEVIKSFIDTISLSGGNFLHLHFSDHENYAIESHLLNQRAENAVQGKD 79
Query: 227 AIY----------TEKMIKNVIEYARLRGIRVIPEIDTPGHTDSM------EPGMPQIHC 270
IY + + + ++ YA+ +GI +IPE+D+P H ++ + G+ +
Sbjct: 80 GIYINPYTGKPFLSYRQLDDIKAYAKAKGIELIPELDSPNHMTAIFKLVQKDRGVKYLQG 139
Query: 271 HCPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPES--YVHLGGDEVDFFCWEQNP 328
+V+ + +D T ++ F++ L +E+ F ++ + H+GGDE + E N
Sbjct: 140 LKSRQVDDE-----IDITNADSITFMQSLMSEVIDIFGDTSQHFHIGGDEFGYSV-ESNH 193
Query: 329 EI------------KAFMSTRQWDGPQLQSYYMQ 350
E K + TR W+ +++ + Q
Sbjct: 194 EFITYANKLSYFLEKKGLKTRMWNDGLIKNTFEQ 227
>pdb|2YL6|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 434
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 84/392 (21%), Positives = 144/392 (36%), Gaps = 59/392 (15%)
Query: 170 VDGSRHYLPIKAIKKQLDIMSYNKLNVLHW--------HLVDDQSFPYESKKFPSLSLKG 221
+D R Y + +K+ +D + LH ++DD S K + S +K
Sbjct: 12 IDAGRKYFSPEQLKEIIDKAKHYGYTDLHLLVGNDGLRFMLDDMSITANGKTYASDDVKR 71
Query: 222 AF--GPDAIY--------TEKMIKNVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCH 271
A G + Y TE + ++I YA+ +GI +IP +++PGH D++ M ++
Sbjct: 72 AIEKGTNDYYNDPNGNHLTESQMTDLINYAKDKGIGLIPTVNSPGHMDAILNAMKELGIQ 131
Query: 272 CPH-RVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQNPEI 330
P+ GK +D + F + L + F + + + F +
Sbjct: 132 NPNFSYFGKKSARTVDLDNEQAVAFTKALIDKYAAYFAK--------KTEIFNIGLDEYA 183
Query: 331 KAFMSTRQWDGPQLQSYYMQ--YLLKA----------IKTIRKRSVVWEEVFQDWKNVNG 378
+ W Q YY Y +K + I K + F D N
Sbjct: 184 NDATDAKGWSVLQADKYYPNEGYPVKGYEKFIAYANDLARIVKSHGLKPMAFNDGIYYNS 243
Query: 379 DAQAMSMDKDTIVQVWRGGGLEGASAAVKRVVSAGYKVINS--------------IGWYL 424
D S DKD IV +W GG A+ K + G++++N+ GWY
Sbjct: 244 DTSFGSFDKDIIVSMWTGGWGGYDVASSKLLAEKGHQILNTNDAWYYVLGRNADGQGWY- 302
Query: 425 DNLEQEFETYHGIRVGSIDLTPEEKKLFLGGEACMWGEKVDETNIESRVWPR----ACAA 480
NL+Q + S+ T +GG W + SR++ A A
Sbjct: 303 -NLDQGLNGIKNTPITSVPKTEGADIPIIGGMVAAWADTPSARYSPSRLFKLMRHFANAN 361
Query: 481 AEHLWSSPQPSNNTKNRITEHVCRLKRRNVQA 512
AE+ + + + N + + + R +V A
Sbjct: 362 AEYFAADYESAEQALNEVPKDLNRYTAESVTA 393
>pdb|2YLL|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 454
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 84/392 (21%), Positives = 144/392 (36%), Gaps = 59/392 (15%)
Query: 170 VDGSRHYLPIKAIKKQLDIMSYNKLNVLHW--------HLVDDQSFPYESKKFPSLSLKG 221
+D R Y + +K+ +D + LH ++DD S K + S +K
Sbjct: 32 IDAGRKYFSPEQLKEIIDKAKHYGYTDLHLLVGNDGLRFMLDDMSITANGKTYASDDVKR 91
Query: 222 AF--GPDAIY--------TEKMIKNVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCH 271
A G + Y TE + ++I YA+ +GI +IP +++PGH D++ M ++
Sbjct: 92 AIEKGTNDYYNDPNGNHLTESQMTDLINYAKDKGIGLIPTVNSPGHMDAILNAMKELGIQ 151
Query: 272 CPH-RVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQNPEI 330
P+ GK +D + F + L + F + + + F +
Sbjct: 152 NPNFSYFGKKSARTVDLDNEQAVAFTKALIDKYAAYFAK--------KTEIFNIGLDEYA 203
Query: 331 KAFMSTRQWDGPQLQSYYMQ--YLLKA----------IKTIRKRSVVWEEVFQDWKNVNG 378
+ W Q YY Y +K + I K + F D N
Sbjct: 204 NDATDAKGWSVLQADKYYPNEGYPVKGYEKFIAYANDLARIVKSHGLKPMAFNDGIYYNS 263
Query: 379 DAQAMSMDKDTIVQVWRGGGLEGASAAVKRVVSAGYKVINS--------------IGWYL 424
D S DKD IV +W GG A+ K + G++++N+ GWY
Sbjct: 264 DTSFGSFDKDIIVSMWTGGWGGYDVASSKLLAEKGHQILNTNDAWYYVLGRNADGQGWY- 322
Query: 425 DNLEQEFETYHGIRVGSIDLTPEEKKLFLGGEACMWGEKVDETNIESRVWPR----ACAA 480
NL+Q + S+ T +GG W + SR++ A A
Sbjct: 323 -NLDQGLNGIKNTPITSVPKTEGADIPIIGGMVAAWADTPSARYSPSRLFKLMRHFANAN 381
Query: 481 AEHLWSSPQPSNNTKNRITEHVCRLKRRNVQA 512
AE+ + + + N + + + R +V A
Sbjct: 382 AEYFAADYESAEQALNEVPKDLNRYTAESVTA 413
>pdb|2YL8|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 434
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 84/392 (21%), Positives = 144/392 (36%), Gaps = 59/392 (15%)
Query: 170 VDGSRHYLPIKAIKKQLDIMSYNKLNVLHW--------HLVDDQSFPYESKKFPSLSLKG 221
+D R Y + +K+ +D + LH ++DD S K + S +K
Sbjct: 12 IDAGRKYFSPEQLKEIIDKAKHYGYTDLHLLVGNDGLRFMLDDMSITANGKTYASDDVKR 71
Query: 222 AF--GPDAIY--------TEKMIKNVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCH 271
A G + Y TE + ++I YA+ +GI +IP +++PGH D++ M ++
Sbjct: 72 AIEKGTNDYYNDPNGNHLTESQMTDLINYAKDKGIGLIPTVNSPGHMDAILNAMKELGIQ 131
Query: 272 CPH-RVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQNPEI 330
P+ GK +D + F + L + F + + + F +
Sbjct: 132 NPNFSYFGKKSARTVDLDNEQAVAFTKALIDKYAAYFAK--------KTEIFNIGLDQYA 183
Query: 331 KAFMSTRQWDGPQLQSYYMQ--YLLKA----------IKTIRKRSVVWEEVFQDWKNVNG 378
+ W Q YY Y +K + I K + F D N
Sbjct: 184 NDATDAKGWSVLQADKYYPNEGYPVKGYEKFIAYANDLARIVKSHGLKPMAFNDGIYYNS 243
Query: 379 DAQAMSMDKDTIVQVWRGGGLEGASAAVKRVVSAGYKVINS--------------IGWYL 424
D S DKD IV +W GG A+ K + G++++N+ GWY
Sbjct: 244 DTSFGSFDKDIIVSMWTGGWGGYDVASSKLLAEKGHQILNTNDAWYYVLGRNADGQGWY- 302
Query: 425 DNLEQEFETYHGIRVGSIDLTPEEKKLFLGGEACMWGEKVDETNIESRVWPR----ACAA 480
NL+Q + S+ T +GG W + SR++ A A
Sbjct: 303 -NLDQGLNGIKNTPITSVPKTEGADIPIIGGMVAAWADTPSARYSPSRLFKLMRHFANAN 361
Query: 481 AEHLWSSPQPSNNTKNRITEHVCRLKRRNVQA 512
AE+ + + + N + + + R +V A
Sbjct: 362 AEYFAADYESAEQALNEVPKDLNRYTAESVTA 393
>pdb|2YL5|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 442
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 112/276 (40%), Gaps = 32/276 (11%)
Query: 170 VDGSRHYLPIKAIKKQLDIMS---YNKLNVLHWH-----LVDDQSFPYESKKFPSLSLKG 221
+D R Y + +K+ +D S Y+ +++L + L+DD + K + S +K
Sbjct: 15 IDAGRKYFTLNQLKRIVDKASELGYSDVHLLLGNDGLRFLLDDMTITANGKTYASDDVKK 74
Query: 222 AF--GPDAIY--------TEKMIKNVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCH 271
A G A Y T+ + +IEYA+ + I +IP I++PGH D+M M ++
Sbjct: 75 AIIEGTKAYYDDPNGTALTQAEVTELIEYAKSKDIGLIPAINSPGHMDAMLVAMEKLGIK 134
Query: 272 CPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQNPEIK 331
P K +D ++FV+ L + Y+ + F + +
Sbjct: 135 NPQAHFDKVSKTTMDLKNEEAMNFVKALIGK--------YMDFFAGKTKIFNFGTDEYAN 186
Query: 332 AFMSTRQW---DGPQLQSYYMQYLLKAIKTIRKRSVVWEEVFQDWKNVNGDAQAMSMDKD 388
S + W QL + +Y + + K + F D D + DKD
Sbjct: 187 DATSAQGWYYLKWYQLYGKFAEY-ANTLAAMAKERGLQPMAFNDGFYYE-DKDDVQFDKD 244
Query: 389 TIVQVWRGGGLEGASAAVKRVVSAGYKVINSIG-WY 423
++ W G A+ + + S GYK +N+ G WY
Sbjct: 245 VLISYWSKGWWGYNLASPQYLASKGYKFLNTNGDWY 280
>pdb|2YL9|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 457
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 112/276 (40%), Gaps = 32/276 (11%)
Query: 170 VDGSRHYLPIKAIKKQLDIMS---YNKLNVLHWH-----LVDDQSFPYESKKFPSLSLKG 221
+D R Y + +K+ +D S Y+ +++L + L+DD + K + S +K
Sbjct: 32 IDAGRKYFTLNQLKRIVDKASELGYSDVHLLLGNDGLRFLLDDMTITANGKTYASDDVKK 91
Query: 222 AF--GPDAIY--------TEKMIKNVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCH 271
A G A Y T+ + +IEYA+ + I +IP I++PGH D+M M ++
Sbjct: 92 AIIEGTKAYYDDPNGTALTQAEVTELIEYAKSKDIGLIPAINSPGHMDAMLVAMEKLGIK 151
Query: 272 CPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQNPEIK 331
P K +D ++FV+ L + Y+ + F + +
Sbjct: 152 NPQAHFDKVSKTTMDLKNEEAMNFVKALIGK--------YMDFFAGKTKIFNFGTDQYAN 203
Query: 332 AFMSTRQW---DGPQLQSYYMQYLLKAIKTIRKRSVVWEEVFQDWKNVNGDAQAMSMDKD 388
S + W QL + +Y + + K + F D D + DKD
Sbjct: 204 DATSAQGWYYLKWYQLYGKFAEY-ANTLAAMAKERGLQPMAFNDGFYYE-DKDDVQFDKD 261
Query: 389 TIVQVWRGGGLEGASAAVKRVVSAGYKVINSIG-WY 423
++ W G A+ + + S GYK +N+ G WY
Sbjct: 262 VLISYWSKGWWGYNLASPQYLASKGYKFLNTNGDWY 297
>pdb|2YLA|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 442
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 112/276 (40%), Gaps = 32/276 (11%)
Query: 170 VDGSRHYLPIKAIKKQLDIMS---YNKLNVLHWH-----LVDDQSFPYESKKFPSLSLKG 221
+D R Y + +K+ +D S Y+ +++L + L+DD + K + S +K
Sbjct: 15 IDAGRKYFTLNQLKRIVDKASELGYSDVHLLLGNDGLRFLLDDMTITANGKTYASDDVKK 74
Query: 222 AF--GPDAIY--------TEKMIKNVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCH 271
A G A Y T+ + +IEYA+ + I +IP I++PGH D+M M ++
Sbjct: 75 AIIEGTKAYYDDPNGTALTQAEVTELIEYAKSKDIGLIPAINSPGHMDAMLVAMEKLGIK 134
Query: 272 CPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQNPEIK 331
P K +D ++FV+ L + Y+ + F + +
Sbjct: 135 NPQAHFDKVSKTTMDLKNEEAMNFVKALIGK--------YMDFFAGKTKIFNFGTDQYAN 186
Query: 332 AFMSTRQW---DGPQLQSYYMQYLLKAIKTIRKRSVVWEEVFQDWKNVNGDAQAMSMDKD 388
S + W QL + +Y + + K + F D D + DKD
Sbjct: 187 DATSAQGWYYLKWYQLYGKFAEY-ANTLAAMAKERGLQPMAFNDGFYYE-DKDDVQFDKD 244
Query: 389 TIVQVWRGGGLEGASAAVKRVVSAGYKVINSIG-WY 423
++ W G A+ + + S GYK +N+ G WY
Sbjct: 245 VLISYWSKGWWGYNLASPQYLASKGYKFLNTNGDWY 280
>pdb|3RPM|A Chain A, Crystal Structure Of The First Gh20 Domain Of A Novel
Beta-N-Acetyl- Hexosaminidase Strh From Streptococcus
Pneumoniae R6
pdb|3RPM|B Chain B, Crystal Structure Of The First Gh20 Domain Of A Novel
Beta-N-Acetyl- Hexosaminidase Strh From Streptococcus
Pneumoniae R6
Length = 467
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 82/392 (20%), Positives = 140/392 (35%), Gaps = 59/392 (15%)
Query: 170 VDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHL--------VDDQSFPYESKKFPSLSLKG 221
+D R Y + +K+ +D + LH + +DD S K + S +K
Sbjct: 17 IDAGRKYFSPEQLKEIIDKAKHYGYTDLHLLVGNDGLRFXLDDXSITANGKTYASDDVKR 76
Query: 222 AF--GPDAIY--------TEKMIKNVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCH 271
A G + Y TE ++I YA+ +GI +IP +++PGH D++ ++
Sbjct: 77 AIEKGTNDYYNDPNGNHLTESQXTDLINYAKDKGIGLIPTVNSPGHXDAILNAXKELGIQ 136
Query: 272 CPH-RVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQNPEI 330
P+ GK +D + F + L + F + + + F +
Sbjct: 137 NPNFSYFGKKSARTVDLDNEQAVAFTKALIDKYAAYFAK--------KTEIFNIGLDEYA 188
Query: 331 KAFMSTRQWDGPQLQSYYMQ--YLLKA----------IKTIRKRSVVWEEVFQDWKNVNG 378
+ W Q YY Y +K + I K + F D N
Sbjct: 189 NDATDAKGWSVLQADKYYPNEGYPVKGYEKFIAYANDLARIVKSHGLKPXAFNDGIYYNS 248
Query: 379 DAQAMSMDKDTIVQVWRGGGLEGASAAVKRVVSAGYKVINS--------------IGWYL 424
D S DKD IV W GG A+ K + G++++N+ GWY
Sbjct: 249 DTSFGSFDKDIIVSXWTGGWGGYDVASSKLLAEKGHQILNTNDAWCYVLGRNADGQGWY- 307
Query: 425 DNLEQEFETYHGIRVGSIDLTPEEKKLFLGGEACMWGEKVDETNIESRVWPR----ACAA 480
NL+Q + S+ T +GG W + S ++ A A
Sbjct: 308 -NLDQGLNGIKNTPITSVPKTEGADIPIIGGXVAAWADTPSARYSPSHLFKLXRHFANAN 366
Query: 481 AEHLWSSPQPSNNTKNRITEHVCRLKRRNVQA 512
AE+ + + + N + + + R +V A
Sbjct: 367 AEYFAADYESAEQALNEVPKDLNRYTAESVAA 398
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 160 FPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSL 219
+ + H+G+++ S Y IK ++D + +NK L + F +S LSL
Sbjct: 6 YEKMLHKGMIIKNSNVYEKIK----EIDTIIFNKTGTLTYGTPIVTQFIGDS-----LSL 56
Query: 220 KGAFGPDAIYTEKMIKNVIEYARLRGIRVI 249
A +A+ + + K +++YA+ +G++++
Sbjct: 57 AYAASVEALSSHPIAKAIVKYAKEQGVKIL 86
>pdb|1V9J|A Chain A, Solution Structure Of A Bola-Like Protein From Mus
Musculus
Length = 113
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 70 RNLTKFDSVVTAPNIVGKTIKLKIRLLNEC--EKYPHIDMDEKYTL 113
R T F +V + GK + + RL+NEC E+ PHI E+ TL
Sbjct: 57 RCATSFRVLVVSAKFEGKPLLQRHRLVNECLAEELPHIHAFEQKTL 102
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 160 FPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSL 219
+ + H+G+++ S Y IK ++D + ++K L + F +S LSL
Sbjct: 6 YEKMLHKGMIIKNSNVYEKIK----EIDTIIFDKTGTLTYGTPIVTQFIGDS-----LSL 56
Query: 220 KGAFGPDAIYTEKMIKNVIEYARLRGIRVI 249
A +A+ + + K +++YA+ +G++++
Sbjct: 57 AYAASVEALSSHPIAKAIVKYAKEQGVKIL 86
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 160 FPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSL 219
+ + H+G+++ S Y IK ++D + + K L + F +S LSL
Sbjct: 6 YEKMLHKGMIIKNSNVYEKIK----EIDTIIFEKTGTLTYGTPIVTQFIGDS-----LSL 56
Query: 220 KGAFGPDAIYTEKMIKNVIEYARLRGIRVI 249
A +A+ + + K +++YA+ +G++++
Sbjct: 57 AYAASVEALSSHPIAKAIVKYAKEQGVKIL 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,002,045
Number of Sequences: 62578
Number of extensions: 829733
Number of successful extensions: 1936
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1838
Number of HSP's gapped (non-prelim): 34
length of query: 592
length of database: 14,973,337
effective HSP length: 104
effective length of query: 488
effective length of database: 8,465,225
effective search space: 4131029800
effective search space used: 4131029800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)