Query psy13692
Match_columns 592
No_of_seqs 300 out of 1625
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 18:03:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13692.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13692hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2499|consensus 100.0 4E-121 8E-126 958.4 40.6 490 19-526 35-539 (542)
2 cd06562 GH20_HexA_HexB-like Be 100.0 2.6E-89 5.7E-94 725.5 30.3 333 163-509 1-348 (348)
3 cd06570 GH20_chitobiase-like_1 100.0 3.3E-86 7.1E-91 690.2 28.5 304 163-498 1-311 (311)
4 cd06563 GH20_chitobiase-like T 100.0 1.3E-84 2.8E-89 692.3 28.7 319 163-498 1-357 (357)
5 cd06569 GH20_Sm-chitobiase-lik 100.0 2.4E-82 5.1E-87 689.7 30.7 329 159-491 1-421 (445)
6 cd06568 GH20_SpHex_like A subg 100.0 3.1E-79 6.7E-84 643.3 26.8 303 163-498 1-329 (329)
7 PF00728 Glyco_hydro_20: Glyco 100.0 4.8E-77 1E-81 631.1 19.9 317 163-488 1-351 (351)
8 cd02742 GH20_hexosaminidase Be 100.0 5E-76 1.1E-80 613.5 26.0 294 165-486 1-303 (303)
9 COG3525 Chb N-acetyl-beta-hexo 100.0 1.6E-72 3.5E-77 609.7 28.8 399 107-516 204-646 (732)
10 cd06564 GH20_DspB_LnbB-like Gl 100.0 2E-70 4.3E-75 577.0 24.0 292 164-487 1-326 (326)
11 cd06565 GH20_GcnA-like Glycosy 100.0 4.2E-51 9.1E-56 425.6 23.7 289 165-486 1-301 (301)
12 PF14845 Glycohydro_20b2: beta 99.8 7.1E-18 1.5E-22 154.6 12.7 119 20-140 1-128 (128)
13 PF02838 Glyco_hydro_20b: Glyc 99.5 7.5E-13 1.6E-17 120.2 14.2 122 19-160 3-124 (124)
14 PF02638 DUF187: Glycosyl hydr 97.7 0.0017 3.8E-08 68.6 17.9 189 165-360 2-220 (311)
15 PF13200 DUF4015: Putative gly 96.9 0.0078 1.7E-07 63.6 11.7 169 179-362 12-189 (316)
16 COG1649 Uncharacterized protei 96.6 0.084 1.8E-06 57.7 17.0 143 163-308 45-199 (418)
17 PF14871 GHL6: Hypothetical gl 95.8 0.075 1.6E-06 49.3 10.0 116 183-308 3-124 (132)
18 PF07555 NAGidase: beta-N-acet 95.1 0.42 9.1E-06 50.6 13.9 197 166-418 1-215 (306)
19 PF10566 Glyco_hydro_97: Glyco 93.3 0.23 5E-06 51.6 7.2 66 174-250 26-91 (273)
20 smart00642 Aamy Alpha-amylase 93.0 0.4 8.6E-06 46.1 8.0 75 178-260 17-97 (166)
21 PF02449 Glyco_hydro_42: Beta- 92.3 0.18 3.9E-06 54.5 5.1 126 177-321 7-140 (374)
22 PRK12313 glycogen branching en 92.3 1.3 2.8E-05 51.5 12.4 121 176-307 166-301 (633)
23 PRK14705 glycogen branching en 92.0 2.5 5.3E-05 52.5 14.7 169 182-376 768-965 (1224)
24 TIGR01515 branching_enzym alph 91.8 1.4 3E-05 51.1 11.8 117 179-307 155-287 (613)
25 TIGR02402 trehalose_TreZ malto 91.0 2.2 4.8E-05 48.7 12.3 115 179-306 110-235 (542)
26 PLN02960 alpha-amylase 90.4 2.3 5E-05 50.7 11.8 120 176-307 412-548 (897)
27 PRK14706 glycogen branching en 90.2 2.3 5.1E-05 49.5 11.6 120 176-307 163-298 (639)
28 PRK12568 glycogen branching en 89.3 3.6 7.7E-05 48.5 12.2 123 176-307 265-400 (730)
29 TIGR02403 trehalose_treC alpha 89.0 1.4 3.1E-05 50.2 8.7 71 178-260 25-102 (543)
30 PF00150 Cellulase: Cellulase 88.1 3.5 7.7E-05 41.7 10.1 156 164-368 9-172 (281)
31 TIGR02100 glgX_debranch glycog 87.5 3.7 8E-05 48.3 11.0 116 185-307 189-333 (688)
32 PRK05402 glycogen branching en 87.4 5.3 0.00012 47.3 12.3 121 176-307 261-396 (726)
33 PLN02447 1,4-alpha-glucan-bran 86.5 6.2 0.00013 46.8 12.0 179 177-375 247-452 (758)
34 PF02065 Melibiase: Melibiase; 86.1 4.5 9.8E-05 44.4 10.0 130 177-316 55-191 (394)
35 PRK03705 glycogen debranching 86.0 4.6 9.9E-05 47.3 10.6 117 185-308 184-329 (658)
36 PF00128 Alpha-amylase: Alpha 85.7 0.87 1.9E-05 46.5 4.1 70 179-260 3-79 (316)
37 cd06593 GH31_xylosidase_YicI Y 85.1 3.4 7.3E-05 43.5 8.3 122 161-305 7-147 (308)
38 TIGR02104 pulA_typeI pullulana 83.9 6.5 0.00014 45.5 10.5 126 179-307 163-311 (605)
39 TIGR02102 pullulan_Gpos pullul 83.5 11 0.00024 46.5 12.7 76 231-307 554-634 (1111)
40 TIGR02456 treS_nterm trehalose 82.5 4.6 0.0001 46.0 8.5 71 178-260 26-103 (539)
41 COG0296 GlgB 1,4-alpha-glucan 82.3 11 0.00024 43.7 11.3 127 168-307 150-295 (628)
42 cd06594 GH31_glucosidase_YihQ 82.3 5.4 0.00012 42.3 8.4 122 160-303 6-151 (317)
43 PRK10933 trehalose-6-phosphate 82.2 5.3 0.00011 45.8 8.8 71 178-260 31-108 (551)
44 COG3661 AguA Alpha-glucuronida 81.9 21 0.00046 39.4 12.5 165 107-309 92-279 (684)
45 PF03648 Glyco_hydro_67N: Glyc 81.5 2.1 4.5E-05 38.9 4.3 30 107-136 88-121 (122)
46 PRK10785 maltodextrin glucosid 80.3 6.2 0.00013 45.6 8.6 74 174-260 171-253 (598)
47 cd06592 GH31_glucosidase_KIAA1 80.0 8 0.00017 40.7 8.7 127 175-318 25-165 (303)
48 cd06595 GH31_xylosidase_XylS-l 79.7 6.3 0.00014 41.3 7.8 121 160-303 7-145 (292)
49 PLN02877 alpha-amylase/limit d 79.4 66 0.0014 39.4 16.9 29 231-260 465-493 (970)
50 PLN02784 alpha-amylase 79.0 8.1 0.00018 46.2 9.0 83 166-261 507-596 (894)
51 PRK14510 putative bifunctional 78.9 13 0.00028 46.6 11.3 113 184-305 191-333 (1221)
52 PRK09441 cytoplasmic alpha-amy 78.9 7.8 0.00017 43.5 8.7 71 180-260 22-108 (479)
53 PRK14511 maltooligosyl trehalo 77.8 7.8 0.00017 46.6 8.5 76 177-260 17-96 (879)
54 TIGR02103 pullul_strch alpha-1 77.5 49 0.0011 40.3 15.1 28 232-260 404-431 (898)
55 PLN02361 alpha-amylase 77.3 9.1 0.0002 42.1 8.4 67 180-259 29-102 (401)
56 TIGR02401 trehalose_TreY malto 74.6 12 0.00026 44.8 8.8 77 176-260 12-92 (825)
57 cd06598 GH31_transferase_CtsZ 73.8 13 0.00029 39.3 8.3 121 161-305 7-152 (317)
58 PLN00145 tyrosine/nicotianamin 73.2 11 0.00023 41.6 7.8 23 227-249 205-227 (430)
59 PF01055 Glyco_hydro_31: Glyco 72.8 16 0.00036 40.2 9.1 162 122-316 3-178 (441)
60 PLN02187 rooty/superroot1 71.6 13 0.00029 41.3 8.1 23 227-249 219-241 (462)
61 COG0436 Aspartate/tyrosine/aro 69.7 13 0.00028 40.7 7.3 24 227-250 178-201 (393)
62 PLN03244 alpha-amylase; Provis 69.6 14 0.00029 44.0 7.6 75 229-307 438-523 (872)
63 PRK10658 putative alpha-glucos 69.2 92 0.002 36.7 14.5 125 161-306 264-407 (665)
64 KOG0259|consensus 68.7 9 0.0002 41.6 5.5 32 227-259 214-245 (447)
65 PRK14582 pgaB outer membrane N 66.1 2.8E+02 0.006 32.8 18.3 164 165-339 314-489 (671)
66 PF14701 hDGE_amylase: glucano 65.8 52 0.0011 36.5 10.8 97 178-276 20-123 (423)
67 KOG0470|consensus 64.9 7.5 0.00016 45.3 4.3 116 182-306 257-393 (757)
68 cd06591 GH31_xylosidase_XylS X 64.0 31 0.00068 36.5 8.7 107 175-302 19-143 (319)
69 PLN00143 tyrosine/nicotianamin 63.2 23 0.00051 38.5 7.8 23 227-249 185-207 (409)
70 PRK07681 aspartate aminotransf 62.7 27 0.00058 37.8 8.0 23 227-249 181-203 (399)
71 TIGR02455 TreS_stutzeri trehal 61.4 23 0.0005 41.3 7.3 70 183-259 77-156 (688)
72 TIGR01531 glyc_debranch glycog 61.3 21 0.00045 45.0 7.4 82 178-272 130-227 (1464)
73 PLN00196 alpha-amylase; Provis 61.0 32 0.00069 38.2 8.3 69 179-260 43-119 (428)
74 PTZ00433 tyrosine aminotransfe 60.4 28 0.00061 37.9 7.7 23 227-249 192-214 (412)
75 PTZ00377 alanine aminotransfer 59.9 20 0.00042 40.1 6.5 23 227-249 233-255 (481)
76 PRK14507 putative bifunctional 59.2 28 0.00061 44.9 8.2 76 176-259 754-833 (1693)
77 PRK09257 aromatic amino acid a 58.4 37 0.0008 36.7 8.2 24 227-250 187-210 (396)
78 COG1874 LacA Beta-galactosidas 57.7 73 0.0016 37.5 10.7 131 178-324 28-167 (673)
79 TIGR03234 OH-pyruv-isom hydrox 57.2 11 0.00024 38.0 3.7 76 164-252 68-143 (254)
80 PRK06348 aspartate aminotransf 56.8 32 0.00068 37.0 7.3 23 227-249 177-199 (384)
81 PLN02450 1-aminocyclopropane-1 56.1 17 0.00036 40.7 5.2 23 227-249 206-228 (468)
82 COG0084 TatD Mg-dependent DNas 56.0 1E+02 0.0022 31.9 10.5 151 231-420 16-178 (256)
83 PLN02376 1-aminocyclopropane-1 55.1 26 0.00056 39.6 6.5 23 227-249 214-236 (496)
84 PF13199 Glyco_hydro_66: Glyco 53.7 29 0.00063 39.9 6.6 155 155-314 93-264 (559)
85 PRK09276 LL-diaminopimelate am 52.5 57 0.0012 34.9 8.4 23 227-249 181-203 (385)
86 PRK08636 aspartate aminotransf 52.2 56 0.0012 35.4 8.4 23 227-249 190-212 (403)
87 PRK06290 aspartate aminotransf 52.1 55 0.0012 35.8 8.3 23 227-249 194-216 (410)
88 KOG3625|consensus 51.7 1.2E+02 0.0026 36.9 10.9 161 178-358 140-313 (1521)
89 PLN02231 alanine transaminase 51.5 55 0.0012 37.4 8.4 24 227-250 286-309 (534)
90 PLN02368 alanine transaminase 50.2 44 0.00095 36.7 7.2 24 227-250 225-248 (407)
91 PRK09265 aminotransferase AlaT 50.0 75 0.0016 34.4 8.9 23 227-249 183-205 (404)
92 PRK10076 pyruvate formate lyas 49.8 51 0.0011 33.0 7.0 68 178-249 143-210 (213)
93 PF01301 Glyco_hydro_35: Glyco 49.3 45 0.00097 35.5 6.8 69 177-259 21-90 (319)
94 PLN02656 tyrosine transaminase 48.7 60 0.0013 35.3 7.9 23 227-249 184-206 (409)
95 PRK07366 succinyldiaminopimela 48.7 48 0.001 35.6 7.1 23 227-249 180-202 (388)
96 cd06603 GH31_GANC_GANAB_alpha 48.5 80 0.0017 33.7 8.6 111 175-305 19-147 (339)
97 PRK09082 methionine aminotrans 48.0 62 0.0014 34.8 7.9 23 227-249 178-200 (386)
98 PF01261 AP_endonuc_2: Xylose 47.9 16 0.00035 34.9 3.0 64 179-253 70-133 (213)
99 PRK09147 succinyldiaminopimela 47.2 61 0.0013 34.9 7.6 23 227-249 181-203 (396)
100 PRK07337 aminotransferase; Val 46.9 70 0.0015 34.3 8.0 25 227-251 178-202 (388)
101 PRK08068 transaminase; Reviewe 46.1 56 0.0012 35.1 7.1 23 227-249 182-204 (389)
102 PRK09505 malS alpha-amylase; R 45.4 78 0.0017 37.4 8.5 80 179-260 229-319 (683)
103 PF01212 Beta_elim_lyase: Beta 44.9 78 0.0017 33.2 7.7 58 175-249 104-162 (290)
104 cd06600 GH31_MGAM-like This fa 44.5 1.6E+02 0.0035 31.2 10.1 111 175-305 19-147 (317)
105 TIGR03537 DapC succinyldiamino 43.7 64 0.0014 34.1 7.1 23 227-249 151-173 (350)
106 PRK06552 keto-hydroxyglutarate 43.6 73 0.0016 32.0 6.9 119 178-318 23-165 (213)
107 PRK05764 aspartate aminotransf 42.8 71 0.0015 34.2 7.3 24 227-250 179-202 (393)
108 PRK00278 trpC indole-3-glycero 42.7 60 0.0013 33.5 6.4 47 185-256 125-171 (260)
109 COG1820 NagA N-acetylglucosami 42.7 26 0.00056 38.2 3.8 67 178-253 99-173 (380)
110 PRK13957 indole-3-glycerol-pho 42.6 22 0.00048 36.6 3.1 72 227-312 133-204 (247)
111 cd06589 GH31 The enzymes of gl 42.6 43 0.00092 34.4 5.3 81 161-253 7-87 (265)
112 COG2100 Predicted Fe-S oxidore 41.2 62 0.0013 34.7 6.1 93 119-245 162-284 (414)
113 PRK08960 hypothetical protein; 41.1 82 0.0018 33.8 7.4 24 227-250 180-203 (387)
114 PRK07683 aminotransferase A; V 40.9 80 0.0017 34.0 7.3 23 227-249 176-198 (387)
115 PRK10426 alpha-glucosidase; Pr 40.7 1.3E+02 0.0028 35.2 9.4 133 159-302 203-347 (635)
116 PRK13355 bifunctional HTH-doma 40.6 94 0.002 35.1 8.1 23 227-249 296-318 (517)
117 PRK05839 hypothetical protein; 40.0 1.3E+02 0.0029 32.1 8.8 23 227-249 170-192 (374)
118 TIGR03540 DapC_direct LL-diami 39.9 1.1E+02 0.0023 32.7 8.1 23 227-249 179-201 (383)
119 COG0134 TrpC Indole-3-glycerol 39.7 32 0.00069 35.6 3.7 74 227-314 138-211 (254)
120 PRK07324 transaminase; Validat 39.6 1.2E+02 0.0026 32.5 8.4 25 227-251 168-192 (373)
121 PRK05942 aspartate aminotransf 39.4 1.1E+02 0.0024 33.0 8.1 23 227-249 185-207 (394)
122 TIGR03538 DapC_gpp succinyldia 38.4 1.1E+02 0.0024 32.8 8.0 23 227-249 180-202 (393)
123 PF07488 Glyco_hydro_67M: Glyc 38.4 2.4E+02 0.0052 30.1 9.8 122 152-309 10-150 (328)
124 cd06604 GH31_glucosidase_II_Ma 37.9 1.3E+02 0.0027 32.2 8.1 117 175-305 19-147 (339)
125 PRK06358 threonine-phosphate d 37.3 1.1E+02 0.0023 32.6 7.5 23 227-249 156-178 (354)
126 PRK08363 alanine aminotransfer 37.0 1.1E+02 0.0023 33.1 7.5 23 227-249 181-203 (398)
127 PRK05301 pyrroloquinoline quin 36.3 98 0.0021 33.4 7.1 58 174-257 43-100 (378)
128 TIGR03586 PseI pseudaminic aci 36.2 1.1E+02 0.0023 32.9 7.2 73 178-252 15-97 (327)
129 PRK09856 fructoselysine 3-epim 35.7 53 0.0011 33.4 4.7 65 178-255 88-152 (275)
130 PF01565 FAD_binding_4: FAD bi 35.2 42 0.00092 30.4 3.5 28 230-259 9-36 (139)
131 PLN02607 1-aminocyclopropane-1 34.6 2.1E+02 0.0046 31.8 9.6 23 227-249 215-237 (447)
132 PRK13384 delta-aminolevulinic 34.4 1.7E+02 0.0037 31.2 8.1 122 199-339 37-186 (322)
133 TIGR01265 tyr_nico_aTase tyros 34.4 1E+02 0.0023 33.3 7.0 24 227-250 184-207 (403)
134 PF05913 DUF871: Bacterial pro 34.3 89 0.0019 33.9 6.3 55 178-253 12-68 (357)
135 KOG0258|consensus 34.3 1.8E+02 0.004 32.1 8.4 108 117-251 136-254 (475)
136 COG0113 HemB Delta-aminolevuli 33.5 1.9E+02 0.0042 30.8 8.2 109 179-299 16-155 (330)
137 TIGR02109 PQQ_syn_pqqE coenzym 33.5 1E+02 0.0023 32.8 6.7 59 174-258 34-92 (358)
138 PLN00175 aminotransferase fami 33.4 1.4E+02 0.0029 32.7 7.7 23 227-249 202-224 (413)
139 PF05213 Corona_NS2A: Coronavi 32.8 89 0.0019 31.5 5.4 103 125-263 18-124 (248)
140 cd00452 KDPG_aldolase KDPG and 32.4 46 0.00099 32.4 3.4 65 235-317 87-152 (190)
141 COG1856 Uncharacterized homolo 32.2 79 0.0017 32.3 5.0 92 159-253 50-157 (275)
142 PRK07550 hypothetical protein; 31.5 1.5E+02 0.0033 31.7 7.6 23 227-249 178-200 (386)
143 PF14542 Acetyltransf_CG: GCN5 31.3 54 0.0012 27.3 3.2 37 229-268 39-75 (78)
144 COG1313 PflX Uncharacterized F 30.7 90 0.002 33.0 5.3 69 174-250 261-333 (335)
145 PRK08361 aspartate aminotransf 30.7 1.6E+02 0.0035 31.6 7.6 23 227-249 181-203 (391)
146 cd06602 GH31_MGAM_SI_GAA This 30.2 4.2E+02 0.0091 28.3 10.6 114 175-306 19-153 (339)
147 COG1168 MalY Bifunctional PLP- 29.8 49 0.0011 36.1 3.3 26 227-252 173-199 (388)
148 PRK09283 delta-aminolevulinic 29.8 2.5E+02 0.0054 30.1 8.4 123 198-339 34-184 (323)
149 KOG0462|consensus 29.4 43 0.00094 38.3 2.9 31 230-260 92-138 (650)
150 PRK11145 pflA pyruvate formate 28.9 1.1E+02 0.0024 30.7 5.7 68 179-249 178-245 (246)
151 TIGR01866 cas_Csn2 CRISPR-asso 28.8 1E+02 0.0023 31.1 5.3 64 163-249 132-195 (216)
152 COG3977 Alanine-alpha-ketoisov 28.7 48 0.001 35.3 2.9 127 108-250 88-217 (417)
153 cd00384 ALAD_PBGS Porphobilino 28.6 2.8E+02 0.006 29.6 8.5 122 199-339 27-176 (314)
154 PF00155 Aminotran_1_2: Aminot 28.4 81 0.0017 33.1 4.8 24 227-250 163-186 (363)
155 TIGR01264 tyr_amTase_E tyrosin 28.1 1.9E+02 0.0042 31.1 7.7 23 227-249 183-205 (401)
156 PF02836 Glyco_hydro_2_C: Glyc 27.6 2.5E+02 0.0054 29.1 8.2 110 176-317 32-159 (298)
157 TIGR00542 hxl6Piso_put hexulos 27.5 1E+02 0.0022 31.5 5.2 61 179-252 93-153 (279)
158 smart00633 Glyco_10 Glycosyl h 27.3 1.5E+02 0.0032 30.2 6.3 63 227-310 11-73 (254)
159 COG1167 ARO8 Transcriptional r 27.0 4.3E+02 0.0093 29.5 10.4 32 227-259 242-273 (459)
160 PRK01060 endonuclease IV; Prov 27.0 2E+02 0.0044 29.3 7.3 59 167-248 5-63 (281)
161 PF14488 DUF4434: Domain of un 26.8 4E+02 0.0086 25.6 8.7 71 176-253 16-86 (166)
162 cd06597 GH31_transferase_CtsY 26.5 6.3E+02 0.014 27.0 11.2 136 161-305 7-174 (340)
163 PRK02308 uvsE putative UV dama 26.3 2.9E+02 0.0064 29.2 8.5 23 227-249 86-108 (303)
164 COG1306 Uncharacterized conser 26.2 8E+02 0.017 26.3 11.1 119 180-306 77-208 (400)
165 COG0366 AmyA Glycosidases [Car 26.1 2.3E+02 0.0049 31.2 8.0 69 179-259 28-103 (505)
166 TIGR01182 eda Entner-Doudoroff 25.9 1.6E+02 0.0034 29.5 5.9 80 178-261 18-117 (204)
167 PLN02763 hydrolase, hydrolyzin 25.9 3.7E+02 0.008 33.3 10.0 111 175-305 196-324 (978)
168 PF12971 NAGLU_N: Alpha-N-acet 25.3 1.1E+02 0.0023 26.1 4.1 32 107-138 30-62 (86)
169 PRK14335 (dimethylallyl)adenos 24.7 1.2E+02 0.0025 34.0 5.4 55 183-250 255-313 (455)
170 PF05089 NAGLU: Alpha-N-acetyl 24.4 86 0.0019 33.7 4.0 71 235-308 98-171 (333)
171 cd04824 eu_ALAD_PBGS_cysteine_ 24.1 3.3E+02 0.0071 29.2 8.0 91 198-299 26-146 (320)
172 PRK13309 ureC urease subunit a 24.0 1.8E+02 0.0039 33.7 6.7 74 179-256 179-256 (572)
173 COG3693 XynA Beta-1,4-xylanase 24.0 1E+02 0.0022 33.1 4.3 64 227-309 77-140 (345)
174 PF09183 DUF1947: Domain of un 23.6 53 0.0011 26.9 1.7 23 173-195 1-24 (65)
175 PF04904 NCD1: NAB conserved r 23.3 54 0.0012 27.7 1.8 49 309-360 26-74 (82)
176 PRK09148 aminotransferase; Val 23.3 3E+02 0.0064 29.9 8.1 23 227-249 180-202 (405)
177 PRK09427 bifunctional indole-3 22.9 70 0.0015 35.9 3.1 72 227-312 141-212 (454)
178 cd09013 BphC-JF8_N_like N-term 22.8 1E+02 0.0022 26.8 3.6 32 229-260 71-102 (121)
179 cd07265 2_3_CTD_N N-terminal d 22.4 1.2E+02 0.0026 26.3 4.0 29 229-257 70-100 (122)
180 PF13204 DUF4038: Protein of u 22.2 2.5E+02 0.0054 29.4 6.9 116 178-318 28-156 (289)
181 PRK13802 bifunctional indole-3 22.2 75 0.0016 37.6 3.3 42 227-268 142-183 (695)
182 KOG0464|consensus 22.2 73 0.0016 35.2 2.9 29 232-260 74-115 (753)
183 PRK14334 (dimethylallyl)adenos 21.1 1.2E+02 0.0025 33.8 4.4 58 183-253 234-293 (440)
184 cd07937 DRE_TIM_PC_TC_5S Pyruv 21.0 5.8E+02 0.013 26.3 9.4 53 176-253 87-139 (275)
185 PRK14327 (dimethylallyl)adenos 20.9 1.3E+02 0.0029 34.2 4.9 51 183-244 309-359 (509)
186 cd01299 Met_dep_hydrolase_A Me 20.7 4.1E+02 0.0089 27.7 8.3 63 178-252 118-180 (342)
187 PF02679 ComA: (2R)-phospho-3- 20.4 1.7E+02 0.0037 30.2 5.0 26 228-253 109-134 (244)
188 PRK14340 (dimethylallyl)adenos 20.4 1.3E+02 0.0028 33.6 4.5 54 183-249 245-302 (445)
189 PRK14331 (dimethylallyl)adenos 20.2 1.5E+02 0.0032 32.9 5.0 53 183-248 242-298 (437)
190 PF03102 NeuB: NeuB family; I 20.1 97 0.0021 31.8 3.2 23 227-249 51-73 (241)
191 COG2100 Predicted Fe-S oxidore 20.1 2.4E+02 0.0052 30.5 6.1 55 183-250 204-260 (414)
No 1
>KOG2499|consensus
Probab=100.00 E-value=3.7e-121 Score=958.41 Aligned_cols=490 Identities=41% Similarity=0.738 Sum_probs=420.9
Q ss_pred ccccccccceEEEcce-EEEec-cCEEEEeC-CCCchHHHHHHHHHHHHHHhcccccccccccccCCCccCcce-EEEEE
Q psy13692 19 NFYERLVTNKQVLKDE-YVGVL-EPFLFKVS-GKSCDILEDAILRYTEILKTNWRNLTKFDSVVTAPNIVGKTI-KLKIR 94 (592)
Q Consensus 19 ~~~~~~~~~~~~~~~~-~~~l~-~~f~~~~~-~~~~~~l~~a~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~ 94 (592)
.+||.| .+++.+++ ...+. ....++.+ +..|++|.+|++||..+|++...+..-. .+ .....+.-. -+.++
T Consensus 35 ~lWP~P--~~~~~~~~l~~~i~~~~~~~~~~~~~~~~il~a~~~ry~~~i~~~~~~~~p~-~~--~~~~~~~~~~~~~~~ 109 (542)
T KOG2499|consen 35 ALWPLP--RTFSCGDELAPEIFYSQIDINLGAGKGCAILRAAFDRYMNIIFGRVEWDPPL-LS--FHVKLGGEAALITLT 109 (542)
T ss_pred ccccCC--ccccccccccccccceeecccccCCcchhHHHHHHHHHhhhhhcccccCCcc-ce--eeeeccceEEEEEEe
Confidence 699999 66777777 22222 12222222 3348999999999999999865443211 00 000111111 12333
Q ss_pred EecCCCCCCCCCC-CCCeEEEEe--CCeEEEEecChhhHHHHHHHHhhCCCCCCCCCceeeeeeEEecCCCCCcccceec
Q psy13692 95 LLNECEKYPHIDM-DEKYTLEIK--NSSCLLTSQSIWGILRGLETFSQLPIPAPNGDQLIIRVQTIEDFPQFPHRGLLVD 171 (592)
Q Consensus 95 v~~~~~~~~~~~~-~EsY~L~I~--~~~i~I~a~t~~Ga~~gl~TL~QL~~~~~~~~~~~i~~~~I~D~P~f~~RGlmLD 171 (592)
++..|...|.+.+ ||||+|.|+ ...+.|.|+++|||+||||||+||+..+..++.+.+..+.|.|+|||+|||+|||
T Consensus 110 ~~~~c~s~p~l~~~dEsYtL~V~~~~~~a~i~A~tvwGAlrglETfSqLv~~d~~~~~~~~~~~~I~D~PrF~hRGlLlD 189 (542)
T KOG2499|consen 110 VTVECPSLPTLHGVDESYTLVVSTTATFAVILANTVWGALRGLETFSQLVWGDSIGGLFMIATAYIQDKPRFGHRGLLLD 189 (542)
T ss_pred ecCCCCCcCcccccccceEEEeecCcceEEEeehhHHHHHHHHHHHHHHheeccCCceEEeeeeeEeccCCCcccceEEe
Confidence 3556777777655 999999998 6789999999999999999999999855555577889999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEec
Q psy13692 172 GSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVIPE 251 (592)
Q Consensus 172 ~sR~f~~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VIPE 251 (592)
|||||+|++.||++||+||++|+||||||++|+||||||++++|+|..+|||++.++||.+|+++||+|||.|||||+||
T Consensus 190 TSRhylpv~~IkrtLeaMa~nKLNVlHWHivDs~SFPle~~~~PeL~~kGaYs~~~vYT~eDv~evV~yarlRGIRVlpE 269 (542)
T KOG2499|consen 190 TSRHYLPVKVIKRTLEAMAANKLNVLHWHIVDSQSFPLESPTFPELHRKGAYSPRHVYTREDVSEVVEYARLRGIRVLPE 269 (542)
T ss_pred cccceecHHHHHHHHHHHHhhhhceeEEEeecCCCCccccCCchhhhhcCCCCcceeecHHHHHHHHHHHHhccceeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccccccCCCccccCCCcccccccccCCCCCChhHHHHHHHHHHHHhhhcCCCeEEecCCccccccccCCHHHH
Q psy13692 252 IDTPGHTDSMEPGMPQIHCHCPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQNPEIK 331 (592)
Q Consensus 252 ID~PGH~~a~~~~~P~l~~~c~~~~~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~lFp~~~~HiGGDEv~~~~w~~~p~~~ 331 (592)
||+|||+++|+.++|++...|++.-...+.+++|||+++.+|+|++++|.||.+.||+++||+|||||...||+++|+||
T Consensus 270 fD~PgHt~sWg~g~~~fl~p~~~~~~~~~~~gplnP~~n~tydvls~i~~dv~evFp~~~~HlGGDEV~~~CW~s~~~Iq 349 (542)
T KOG2499|consen 270 FDTPGHTGSWGPGYPDFLTPCWSSFEVQPPFGPLNPTNNHTYDVLSEIFEDVSEVFPDEFFHLGGDEVSTPCWKSNPEIQ 349 (542)
T ss_pred ccCCcccccccCCCCcccCCcccccccCCCCcCCCCCchhHHHHHHHHHHHHHHhCcHHHeecCCceeecccccCChHHH
Confidence 99999999999999999988987222223489999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCC--ChhhHHHHHHHHHHHHHHhhccceeEeccccccccccCCccccCCCCCCeEEEecCCCCCCChHHHHHHH
Q psy13692 332 AFMSTRQW--DGPQLQSYYMQYLLKAIKTIRKRSVVWEEVFQDWKNVNGDAQAMSMDKDTIVQVWRGGGLEGASAAVKRV 409 (592)
Q Consensus 332 ~~m~~~g~--~~~~L~~~f~~~v~~~l~~~Gk~~i~W~D~l~~~~~~~g~~~~~~Lpkd~iv~~W~~~~~~~~~~~~~~~ 409 (592)
+||+++|+ +...|+.+|++++.+++...++++|+|+|++++ ..++++++|||.|..+.. . ....+.
T Consensus 350 ~fM~~kGfg~~~~~~~~~~~~~~~~i~~s~~~~~I~Wqevf~n---------~~~i~p~tiiq~W~~~~~--~-~~~~k~ 417 (542)
T KOG2499|consen 350 DFMRKKGFGLDTKSLERLYIQFLLDILNSWNKTVIVWQEVFDN---------KRKIDPRTIIQIWKIGTW--Y-PKELKI 417 (542)
T ss_pred HHHHhCCCCchHHHHHHHHHHHHHHHHHhcCceEEEeehhccc---------cccCCCCceeeeeccCCc--c-HHHHHH
Confidence 99999999 677799999999999999999999999999998 456789999999998631 1 233556
Q ss_pred HHcCCeEEec--CCcccccccc--cccccccccCCCCCCChhhhccccccceeeccCCCCCcchhhhhhhHHHHHHHhhc
Q psy13692 410 VSAGYKVINS--IGWYLDNLEQ--EFETYHGIRVGSIDLTPEEKKLFLGGEACMWGEKVDETNIESRVWPRACAAAEHLW 485 (592)
Q Consensus 410 ~~~Gy~vI~s--~~~YLD~~~~--~W~~~Y~~~P~~~~~~~~~~~~vlGge~~lWsE~vd~~~l~~~lwPR~~A~AErlW 485 (592)
+.+||++|+| .+||||++.| +|+++|+.+|.++.++.+++++|+|||+|||||++|++++++|+||||+|+|||||
T Consensus 418 v~~~~~~ivs~s~~wYLd~~~~g~dw~~~Y~~~p~~~~g~~~~k~lVlGGE~cmWgE~vD~t~L~~RlWPRAsA~AERLW 497 (542)
T KOG2499|consen 418 VTKGYRFIVSNSAAWYLDHIGYGSDWRKVYNTEPLSGMGTPEQKKLVLGGEVCMWGEYVDNTNLESRLWPRASAAAERLW 497 (542)
T ss_pred HhccCceEEEeccceEeeccccCCChhheeeccccccCCCHHHhhheecceeeeehhhccccccccccccchhHHHHHhh
Confidence 6666665555 4799999888 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC--ccHHHHHHHHHHHHHHCCCCccCCCCccccccCCC
Q psy13692 486 SSPQPS--NNTKNRITEHVCRLKRRNVQAAPVYDISYCSPVIP 526 (592)
Q Consensus 486 s~~~~~--~~~~~Rl~~~~~rl~~rGi~a~p~~~p~~C~~~~~ 526 (592)
|.+..+ .++++||..|||||++|||.|+|++ |+||.++..
T Consensus 498 S~~~~~~~~~A~~Rl~~~RcrLv~RGi~A~p~~-p~~C~~~~~ 539 (542)
T KOG2499|consen 498 SNKKVSRLLDAYPRLHLFRCRLVARGIGAQPVQ-PGWCLQEEG 539 (542)
T ss_pred cccccchHHHHHHHHHHHHHHHHhcCCCcCCCC-CcccccCCC
Confidence 966655 8899999999999999999999999 999999854
No 2
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=100.00 E-value=2.6e-89 Score=725.54 Aligned_cols=333 Identities=51% Similarity=0.920 Sum_probs=308.1
Q ss_pred CCcccceecCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHH
Q psy13692 163 FPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYAR 242 (592)
Q Consensus 163 f~~RGlmLD~sR~f~~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~ 242 (592)
|+|||+|||+||||+|+++||++||.||++|||+|||||+||||||+|+++||+|+.+|+|++.++||++||++||+||+
T Consensus 1 f~~RG~mlDvaR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~ 80 (348)
T cd06562 1 FPHRGLLLDTSRHFLSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYAR 80 (348)
T ss_pred CCccceeeeccccCCCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCeEEeccCCCCccccccccCCCccccCCCc---ccccccccCCCCCChhHHHHHHHHHHHHhhhcCCCeEEecCCcc
Q psy13692 243 LRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHR---VEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEV 319 (592)
Q Consensus 243 ~rGI~VIPEID~PGH~~a~~~~~P~l~~~c~~~---~~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~lFp~~~~HiGGDEv 319 (592)
+|||+||||||+|||+.+|++++|++.+.|.+. .......++|||++|+||+|+++|++|++++||++||||||||+
T Consensus 81 ~rgI~vIPEID~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~vl~E~~~lF~~~~iHiGgDE~ 160 (348)
T cd06562 81 LRGIRVIPEIDTPGHTGSWGQGYPELLTGCYAVWRKYCPEPPCGQLNPTNPKTYDFLKTLFKEVSELFPDKYFHLGGDEV 160 (348)
T ss_pred HcCCEEEEeccCchhhHHHHHhChhhhCCCCccccccccCCCCccccCCChhHHHHHHHHHHHHHHhcCCcceEeecCCC
Confidence 999999999999999999999999998776531 11222357899999999999999999999999999999999999
Q ss_pred ccccccCCHHHHHHHHhCCC-ChhhHHHHHHHHHHHHHHhhccceeEeccccccccccCCccccCCCCCCeEEEecCCCC
Q psy13692 320 DFFCWEQNPEIKAFMSTRQW-DGPQLQSYYMQYLLKAIKTIRKRSVVWEEVFQDWKNVNGDAQAMSMDKDTIVQVWRGGG 398 (592)
Q Consensus 320 ~~~~w~~~p~~~~~m~~~g~-~~~~L~~~f~~~v~~~l~~~Gk~~i~W~D~l~~~~~~~g~~~~~~Lpkd~iv~~W~~~~ 398 (592)
...||+++|.|+++|+++|+ +..+|+.+|++++.++++++||++++|+|++.+. ...++++++|++|++..
T Consensus 161 ~~~~w~~~p~~~~~m~~~g~~~~~~l~~~f~~~~~~~l~~~Gk~~i~W~d~~~~~--------~~~~~~~~iv~~W~~~~ 232 (348)
T cd06562 161 NFNCWNSNPEIQKFMKKNNGTDYSDLESYFIQRALDIVRSLGKTPIVWEEVFDNG--------VYLLPKDTIVQVWGGSD 232 (348)
T ss_pred CCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCeEEEeeecccCC--------CccCCCCeEEEECCCcH
Confidence 99999999999999999998 9999999999999999999999999999998761 12589999999999863
Q ss_pred CCChHHHHHHHHHcCCeEEecC--Ccccccccc-------cccccccccCCCCCCChhhhccccccceeeccCCCCCcch
Q psy13692 399 LEGASAAVKRVVSAGYKVINSI--GWYLDNLEQ-------EFETYHGIRVGSIDLTPEEKKLFLGGEACMWGEKVDETNI 469 (592)
Q Consensus 399 ~~~~~~~~~~~~~~Gy~vI~s~--~~YLD~~~~-------~W~~~Y~~~P~~~~~~~~~~~~vlGge~~lWsE~vd~~~l 469 (592)
.+.+++++||+||+|+ .||||+... +|+++|+++|..+..+++..++|+|||+|||+|++++.++
T Consensus 233 ------~~~~~~~~G~~vI~s~~~~~Yld~~~~~~~~~~~~~~~~y~~~p~~~~~~~~~~~~ilG~~~~lW~E~~~~~~~ 306 (348)
T cd06562 233 ------ELKNVLAAGYKVILSSYDFWYLDCGFGGWVGPGNDWCDPYKNWPRIYSGTPEQKKLVLGGEACMWGEQVDDTNL 306 (348)
T ss_pred ------HHHHHHHCCCCEEEeCCCcEEEeecCCCCCCCCCcHhhhhcCCCCCCCCChhhcccEEEEEEEeeeeeeCccce
Confidence 5678999999999998 699998643 7999999999877666677889999999999999999899
Q ss_pred hhhhhhHHHHHHHhhcCCCCCC--ccHHHHHHHHHHHHHHCC
Q psy13692 470 ESRVWPRACAAAEHLWSSPQPS--NNTKNRITEHVCRLKRRN 509 (592)
Q Consensus 470 ~~~lwPR~~A~AErlWs~~~~~--~~~~~Rl~~~~~rl~~rG 509 (592)
++++|||++|+||++|+++..+ .+|.+||..|+|||.+||
T Consensus 307 ~~~~~PR~~a~AE~~W~~~~~~~~~~f~~Rl~~~~~~l~~~g 348 (348)
T cd06562 307 DQRLWPRASALAERLWSGPSDTNLTDAEPRLVEFRCRLVRRG 348 (348)
T ss_pred eehhhhhHHHHHHHhhCCCcCCCHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999998765 889999999999999998
No 3
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=3.3e-86 Score=690.22 Aligned_cols=304 Identities=43% Similarity=0.783 Sum_probs=278.9
Q ss_pred CCcccceecCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHH
Q psy13692 163 FPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYAR 242 (592)
Q Consensus 163 f~~RGlmLD~sR~f~~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~ 242 (592)
|+|||+|||+||||+|+++||++||.||++|||+||||||||||||+|+++||+|+++|+++ ++||++||++||+||+
T Consensus 1 f~~RG~mlD~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~--~~yT~~di~elv~yA~ 78 (311)
T cd06570 1 FPWRGLLIDVSRHFIPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDG--LYYTQEQIREVVAYAR 78 (311)
T ss_pred CCccCeEEecCCCCcCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCC--CccCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999754 7899999999999999
Q ss_pred HcCCeEEeccCCCCccccccccCCCccccCCC----cccccccccCCCCCChhHHHHHHHHHHHHhhhcCCCeEEecCCc
Q psy13692 243 LRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPH----RVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDE 318 (592)
Q Consensus 243 ~rGI~VIPEID~PGH~~a~~~~~P~l~~~c~~----~~~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~lFp~~~~HiGGDE 318 (592)
+|||+||||||+|||+.+|+++||+|.+.|.. ..++. ...+|||++|+||+|+++|++|++++||++||||||||
T Consensus 79 ~rgI~vIPEId~PGH~~a~~~~ypel~~~~~~~~~~~~~~~-~~~~l~~~~p~t~~f~~~l~~E~~~lF~~~~iHiGgDE 157 (311)
T cd06570 79 DRGIRVVPEIDVPGHASAIAVAYPELASGPGPYVIERGWGV-FEPLLDPTNEETYTFLDNLFGEMAELFPDEYFHIGGDE 157 (311)
T ss_pred HcCCEEEEeecCccchHHHHHhCHHhccCCCcccccccccc-CCCccCCCChhHHHHHHHHHHHHHHhCCCCceEeeccC
Confidence 99999999999999999999999999876543 11221 13479999999999999999999999999999999999
Q ss_pred cccccccCCHHHHHHHHhCCC-ChhhHHHHHHHHHHHHHHhhccceeEeccccccccccCCccccCCCCCCeEEEecCCC
Q psy13692 319 VDFFCWEQNPEIKAFMSTRQW-DGPQLQSYYMQYLLKAIKTIRKRSVVWEEVFQDWKNVNGDAQAMSMDKDTIVQVWRGG 397 (592)
Q Consensus 319 v~~~~w~~~p~~~~~m~~~g~-~~~~L~~~f~~~v~~~l~~~Gk~~i~W~D~l~~~~~~~g~~~~~~Lpkd~iv~~W~~~ 397 (592)
+...||+++|.|+++|+++|+ +..+|+.+|++++.++++++||++++|+|++.. .+|+++|||.|.+.
T Consensus 158 ~~~~~W~~~p~~~~~~~~~g~~~~~~l~~~f~~~~~~~v~~~Gk~~~~W~d~~~~-----------~l~~~~iv~~W~~~ 226 (311)
T cd06570 158 VDPKQWNENPRIQAFMKEHGLKDAAALQAYFNQRVEKILSKHGKKMIGWDEVLHP-----------DLPKNVVIQSWRGH 226 (311)
T ss_pred CCCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCeEEEecccccc-----------CCCCCeEEEEeCCc
Confidence 999999999999999999999 889999999999999999999999999998753 48899999999864
Q ss_pred CCCChHHHHHHHHHcCCeEEecCCcccccccccccccccccCCCCCCChhhhccccccceeeccCCCCCcchhhhhhhHH
Q psy13692 398 GLEGASAAVKRVVSAGYKVINSIGWYLDNLEQEFETYHGIRVGSIDLTPEEKKLFLGGEACMWGEKVDETNIESRVWPRA 477 (592)
Q Consensus 398 ~~~~~~~~~~~~~~~Gy~vI~s~~~YLD~~~~~W~~~Y~~~P~~~~~~~~~~~~vlGge~~lWsE~vd~~~l~~~lwPR~ 477 (592)
..+.+++++||++|+|++||||+.+ +|..+|+++|. |+|||+|||+|++++.++++++|||+
T Consensus 227 ------~~~~~~~~~G~~vI~s~~~YlD~~~-~~~~~y~~~p~-----------ilG~~~~lW~E~v~~~~~~~~~~PR~ 288 (311)
T cd06570 227 ------DSLGEAAKAGYQGILSTGYYIDQPQ-PAAYHYRVDPM-----------ILGGEATMWAELVSEETIDSRLWPRT 288 (311)
T ss_pred ------hHHHHHHHCCCCEEEechhheeCCC-chhheeCCCCc-----------EEEEEEEEeecCcCHHHHHHHHhHHH
Confidence 3457899999999999999999965 46789999884 99999999999999889999999999
Q ss_pred HHHHHhhcCCCCCC--ccHHHHH
Q psy13692 478 CAAAEHLWSSPQPS--NNTKNRI 498 (592)
Q Consensus 478 ~A~AErlWs~~~~~--~~~~~Rl 498 (592)
+|+|||+||+++.+ ++|.+||
T Consensus 289 ~A~AE~~Ws~~~~~~~~~~~~Rl 311 (311)
T cd06570 289 AAIAERLWSAQDVRDEDDMYRRL 311 (311)
T ss_pred HHHHHHhhCCCcCCCHHHHHhhC
Confidence 99999999998865 7777775
No 4
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=1.3e-84 Score=692.32 Aligned_cols=319 Identities=35% Similarity=0.647 Sum_probs=289.1
Q ss_pred CCcccceecCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCC----------------C
Q psy13692 163 FPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGP----------------D 226 (592)
Q Consensus 163 f~~RGlmLD~sR~f~~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p----------------~ 226 (592)
|+|||+|||+||||+|+++||++||.||++|||+|||||+||||||+|+++||+|+++|+|++ .
T Consensus 1 f~~RG~mLD~aR~f~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~ 80 (357)
T cd06563 1 FSWRGLMLDVSRHFFPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYG 80 (357)
T ss_pred CCccceeeeccccCcCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccC
Confidence 899999999999999999999999999999999999999999999999999999999999986 4
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEeccCCCCccccccccCCCccccCCC-c--ccccccccCCCCCChhHHHHHHHHHHHH
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPH-R--VEGKTFVGPLDPTKNVTLDFVRDLFTEL 303 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VIPEID~PGH~~a~~~~~P~l~~~c~~-~--~~g~~~~~~lnp~~~~ty~fl~~ll~Ev 303 (592)
++||++||++||+||++|||+||||||+|||+.+|++++|+|.+.|.. . ..+....++|||++|+||+|+++|++|+
T Consensus 81 ~~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~~~pel~~~~~~~~~~~~~~~~~~~L~~~~~~t~~f~~~ll~E~ 160 (357)
T cd06563 81 GFYTQEEIREIVAYAAERGITVIPEIDMPGHALAALAAYPELGCTGGPGSVVSVQGVVSNVLCPGKPETYTFLEDVLDEV 160 (357)
T ss_pred ceECHHHHHHHHHHHHHcCCEEEEecCCchhHHHHHHhCccccCCCCCCccccccCcCCCccCCCChhHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999875543 1 1122235789999999999999999999
Q ss_pred hhhcCCCeEEecCCccccccccCCHHHHHHHHhCCC-ChhhHHHHHHHHHHHHHHhhccceeEeccccccccccCCcccc
Q psy13692 304 GQRFPESYVHLGGDEVDFFCWEQNPEIKAFMSTRQW-DGPQLQSYYMQYLLKAIKTIRKRSVVWEEVFQDWKNVNGDAQA 382 (592)
Q Consensus 304 ~~lFp~~~~HiGGDEv~~~~w~~~p~~~~~m~~~g~-~~~~L~~~f~~~v~~~l~~~Gk~~i~W~D~l~~~~~~~g~~~~ 382 (592)
+++||++||||||||+...||+++|.|+++|+++|+ +..+|+.+|++++.++++++|+++++|+|++..
T Consensus 161 ~~lF~~~~iHiGgDE~~~~~w~~~~~~~~~~~~~g~~~~~~l~~~f~~~~~~~v~~~G~~~i~W~d~~~~---------- 230 (357)
T cd06563 161 AELFPSPYIHIGGDEVPKGQWEKSPACQARMKEEGLKDEHELQSYFIKRVEKILASKGKKMIGWDEILEG---------- 230 (357)
T ss_pred HHhCCCCeEEEeccccCCcccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCEEEEeeccccc----------
Confidence 999999999999999999999999999999999999 889999999999999999999999999999865
Q ss_pred CCCCCCeEEEecCCCCCCChHHHHHHHHHcCCeEEecCC--cccccccc-------------cccccccccCCCCCCChh
Q psy13692 383 MSMDKDTIVQVWRGGGLEGASAAVKRVVSAGYKVINSIG--WYLDNLEQ-------------EFETYHGIRVGSIDLTPE 447 (592)
Q Consensus 383 ~~Lpkd~iv~~W~~~~~~~~~~~~~~~~~~Gy~vI~s~~--~YLD~~~~-------------~W~~~Y~~~P~~~~~~~~ 447 (592)
.+++++||++|++. ..+..++++||++|+|++ ||||+... +|+++|+++|......++
T Consensus 231 -~l~~~~iv~~W~~~------~~~~~~~~~G~~vI~s~~~~~Yld~~~~~~~~~~~~~~~~~~~~~~y~~~P~~~~~~~~ 303 (357)
T cd06563 231 -GLPPNATVMSWRGE------DGGIKAAKQGYDVIMSPGQYLYLDYAQSKGPDEPASWAGFNTLEKVYSFEPVPGGLTPE 303 (357)
T ss_pred -CCCCCcEEEECCCc------hHHHHHHHCCCCEEEeCCCceEEecCCCCCCCCCccccCCCCHHHHhcCCCCCCCCChh
Confidence 28999999999986 345789999999999984 89998642 689999999987655667
Q ss_pred hhccccccceeeccCCCC-CcchhhhhhhHHHHHHHhhcCCCCCC--ccHHHHH
Q psy13692 448 EKKLFLGGEACMWGEKVD-ETNIESRVWPRACAAAEHLWSSPQPS--NNTKNRI 498 (592)
Q Consensus 448 ~~~~vlGge~~lWsE~vd-~~~l~~~lwPR~~A~AErlWs~~~~~--~~~~~Rl 498 (592)
++++|+|||+|||+|+++ ..++++++|||++|+||++||++..+ ++|..||
T Consensus 304 ~~~~ilG~~~~lW~E~~~~~~~~~~~~~PR~~a~AE~~W~~~~~~~~~~f~~rl 357 (357)
T cd06563 304 QAKRILGVQANLWTEYIPTPERVEYMAFPRLLALAEVAWTPPEKKDWEDFRKRL 357 (357)
T ss_pred HhcCEEEEEEEecccccCCHHHHHHHHHHHHHHHHHHHhCCccCCCHHHHHhhC
Confidence 888999999999999995 45789999999999999999998754 6677664
No 5
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=2.4e-82 Score=689.67 Aligned_cols=329 Identities=27% Similarity=0.410 Sum_probs=281.5
Q ss_pred cCCCCCcccceecCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCC-------------
Q psy13692 159 DFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGP------------- 225 (592)
Q Consensus 159 D~P~f~~RGlmLD~sR~f~~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p------------- 225 (592)
|+|||+|||+|||+||||+|+++||++||.||++|||+|||||+||||||+|+++||+|+++|||+.
T Consensus 1 D~Prf~~RGlmLDvaR~f~~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~ 80 (445)
T cd06569 1 DAPRFEYRGMHLDVARNFHSKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQL 80 (445)
T ss_pred CCCCCcccceeeeccCCCCCHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhccccccccccccccccccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999841
Q ss_pred ----------CCCCcHHHHHHHHHHHHHcCCeEEeccCCCCcccccccc----CCCccccCCC---------cc------
Q psy13692 226 ----------DAIYTEKMIKNVIEYARLRGIRVIPEIDTPGHTDSMEPG----MPQIHCHCPH---------RV------ 276 (592)
Q Consensus 226 ----------~~~YT~edi~eIv~YA~~rGI~VIPEID~PGH~~a~~~~----~P~l~~~c~~---------~~------ 276 (592)
.++||++||++||+||++|||+||||||+|||+.+++++ ||+|.+.+.. .+
T Consensus 81 ~~~~~~~~~~~g~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~a~~~~yp~l~~~g~~~~~~~~~~~d~~~~~~~ 160 (445)
T cd06569 81 GSGPDTNNSGSGYYSRADYIEILKYAKARHIEVIPEIDMPGHARAAIKAMEARYRKLMAAGKPAEAEEYRLSDPADTSQY 160 (445)
T ss_pred ccCcccCcccCCccCHHHHHHHHHHHHHcCCEEEEccCCchhHHHHHHhhhccchhhhccCCccccccccccCccccccc
Confidence 378999999999999999999999999999999999876 7888643210 00
Q ss_pred -ccc-ccccCCCCCChhHHHHHHHHHHHHhhhc-----CCCeEEecCCccccccccCCHHHH--HHHHhCCC-ChhhHHH
Q psy13692 277 -EGK-TFVGPLDPTKNVTLDFVRDLFTELGQRF-----PESYVHLGGDEVDFFCWEQNPEIK--AFMSTRQW-DGPQLQS 346 (592)
Q Consensus 277 -~g~-~~~~~lnp~~~~ty~fl~~ll~Ev~~lF-----p~~~~HiGGDEv~~~~w~~~p~~~--~~m~~~g~-~~~~L~~ 346 (592)
... ...++|||++|+||+|+++||+||+++| |++||||||||++..||.++|.|+ ++|+++|+ +..+|+.
T Consensus 161 ~~~~~~~~~~L~p~~~~ty~fl~~vl~Ev~~lF~~~g~P~~yiHiGGDEv~~~~W~~~~~~~~~~~~~~~~~~~~~~l~~ 240 (445)
T cd06569 161 LSVQFYTDNVINPCMPSTYRFVDKVIDEIARMHQEAGQPLTTIHFGGDEVPEGAWGGSPACKAQLFAKEGSVKDVEDLKD 240 (445)
T ss_pred ccccccccccccCCchhHHHHHHHHHHHHHHHHhccCCCcceEEEeccccCCCcccCCHHHHHHHHHHhcCCCCHHHHHH
Confidence 000 1236899999999999999999999999 669999999999999999999999 99999998 8999999
Q ss_pred HHHHHHHHHHHhhccceeEeccccccccccCCccccCCCCCCeEEEecCCCCCCChHHHHHHHHHcCCeEEecCC--ccc
Q psy13692 347 YYMQYLLKAIKTIRKRSVVWEEVFQDWKNVNGDAQAMSMDKDTIVQVWRGGGLEGASAAVKRVVSAGYKVINSIG--WYL 424 (592)
Q Consensus 347 ~f~~~v~~~l~~~Gk~~i~W~D~l~~~~~~~g~~~~~~Lpkd~iv~~W~~~~~~~~~~~~~~~~~~Gy~vI~s~~--~YL 424 (592)
+|++++.++++++||++++|+|++....... ....++++++|++|+.....+ .+.+.+++++||+||+|++ |||
T Consensus 241 ~f~~~v~~~l~~~Gk~~i~W~e~~~~~~~~~---~~~~~~~~~~v~~W~~~~~~~-~~~~~~~~~~G~~vI~s~~~~~Yl 316 (445)
T cd06569 241 YFFERVSKILKAHGITLAGWEDGLLGKDTTN---VDGFATPYVWNNVWGWGYWGG-EDRAYKLANKGYDVVLSNATNLYF 316 (445)
T ss_pred HHHHHHHHHHHHcCCeEEEecccccCCCccc---ccccCCCCeEEEEccCCcccc-cHHHHHHHHCCCCEEEeCCCcEEE
Confidence 9999999999999999999999987621100 012467899999998642111 3456789999999999985 899
Q ss_pred ccccc---------------cccccccccCCCC----------------------CCChhhhccccccceeeccCCCCC-
Q psy13692 425 DNLEQ---------------EFETYHGIRVGSI----------------------DLTPEEKKLFLGGEACMWGEKVDE- 466 (592)
Q Consensus 425 D~~~~---------------~W~~~Y~~~P~~~----------------------~~~~~~~~~vlGge~~lWsE~vd~- 466 (592)
||.+. +|+++|+++|... ..+++++++|+|||+|||+|++++
T Consensus 317 D~~~~~~~~~~g~~w~~~~~~~~~~y~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilG~e~~lWsE~v~~~ 396 (445)
T cd06569 317 DFPYEKHPEERGYYWAGRFVDTKKVFSFMPDNLYANAEVTRDGDPIDDTALNGKVRLTLEGPKNILGLQGQLWSETIRTD 396 (445)
T ss_pred ecCCCCCCCcCCcccccCCCCHHHhhccCCchhhccchhhcccCccccccccccccCChhHhcceeEEEEeeeccccCCH
Confidence 98521 5677899998531 235677889999999999999964
Q ss_pred cchhhhhhhHHHHHHHhhcCCCCCC
Q psy13692 467 TNIESRVWPRACAAAEHLWSSPQPS 491 (592)
Q Consensus 467 ~~l~~~lwPR~~A~AErlWs~~~~~ 491 (592)
.++++++|||++|+||++||+....
T Consensus 397 ~~l~~~~~PR~~A~AE~~Ws~~~~~ 421 (445)
T cd06569 397 EQLEYMVFPRLLALAERAWHKAPWE 421 (445)
T ss_pred HHhHHHhhhHHHHHHHHHhcCCccc
Confidence 5799999999999999999997653
No 6
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=100.00 E-value=3.1e-79 Score=643.35 Aligned_cols=303 Identities=31% Similarity=0.523 Sum_probs=264.1
Q ss_pred CCcccceecCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCC-----CCCCCcHHHHHHH
Q psy13692 163 FPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFG-----PDAIYTEKMIKNV 237 (592)
Q Consensus 163 f~~RGlmLD~sR~f~~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~-----p~~~YT~edi~eI 237 (592)
|+|||+|||+||||+|+++||++||.||++|||+|||||+||||||+|+++||+|+..|+++ +.++||++||++|
T Consensus 1 f~~RG~mlD~aR~f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~el 80 (329)
T cd06568 1 FAYRGLMLDVARHFFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDI 80 (329)
T ss_pred CCccceeeeccCCCcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999874 4589999999999
Q ss_pred HHHHHHcCCeEEeccCCCCccccccccCCCccccCCCcc---cccccccCCCCCChhHHHHHHHHHHHHhhhcCCCeEEe
Q psy13692 238 IEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRV---EGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHL 314 (592)
Q Consensus 238 v~YA~~rGI~VIPEID~PGH~~a~~~~~P~l~~~c~~~~---~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~lFp~~~~Hi 314 (592)
|+||++|||+||||||+|||+.+|+++||+|.+.+...+ ......++|||++|+||+|+++|++|++++||++||||
T Consensus 81 v~yA~~rgI~vIPEiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~f~~~~iHi 160 (329)
T cd06568 81 VAYAAERHITVVPEIDMPGHTNAALAAYPELNCDGKAKPLYTGIEVGFSSLDVDKPTTYEFVDDVFRELAALTPGPYIHI 160 (329)
T ss_pred HHHHHHcCCEEEEecCCcHHHHHHHHhChhhccCCCCCccccccCCCCcccCCCCHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 999999999999999999999999999999975322111 11122468999999999999999999999999999999
Q ss_pred cCCccccccccCCHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhccceeEeccccccccccCCccccCCCCCCeEEEec
Q psy13692 315 GGDEVDFFCWEQNPEIKAFMSTRQWDGPQLQSYYMQYLLKAIKTIRKRSVVWEEVFQDWKNVNGDAQAMSMDKDTIVQVW 394 (592)
Q Consensus 315 GGDEv~~~~w~~~p~~~~~m~~~g~~~~~L~~~f~~~v~~~l~~~Gk~~i~W~D~l~~~~~~~g~~~~~~Lpkd~iv~~W 394 (592)
||||+.... .+++.+|++++.++++++||++++|+|++.. .+++++||++|
T Consensus 161 GgDE~~~~~------------------~~~~~~f~~~~~~~v~~~Gk~~~~W~d~~~~-----------~l~~~~iv~~W 211 (329)
T cd06568 161 GGDEAHSTP------------------HDDYAYFVNRVRAIVAKYGKTPVGWQEIARA-----------DLPAGTVAQYW 211 (329)
T ss_pred ecccCCCCc------------------hHHHHHHHHHHHHHHHHCCCeEEEECccccc-----------CCCCCeEEEEC
Confidence 999997531 3467899999999999999999999998653 38999999999
Q ss_pred CCCCCCChHHHHHHHHHcCCeEEecCC--ccccccc------------c-cccccccccCCCCCCChhhhccccccceee
Q psy13692 395 RGGGLEGASAAVKRVVSAGYKVINSIG--WYLDNLE------------Q-EFETYHGIRVGSIDLTPEEKKLFLGGEACM 459 (592)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~Gy~vI~s~~--~YLD~~~------------~-~W~~~Y~~~P~~~~~~~~~~~~vlGge~~l 459 (592)
++... .+.+.+++++||++|+|++ ||||+.. + +|+++|+++|.....+ +++++|+|||+||
T Consensus 212 ~~~~~---~~~~~~~~~~G~~vI~s~~~~~YlD~~~~~~~~~~~~~~~~~~~~~~y~~~P~~~~~~-~~~~~ilG~~~~l 287 (329)
T cd06568 212 SDRAP---DADAAAALDKGAKVILSPADKAYLDMKYDADSPLGLTWAGPVEVREAYDWDPAAYGPG-VPDEAILGVEAPL 287 (329)
T ss_pred CCCCC---chHHHHHHHCCCCEEEeCCCcEEEecCCCCCCCCCcccCCCCCHHHHeeeCCCCCCCc-chhhCEEEEEEee
Confidence 98531 2456889999999999984 9999852 1 7899999999765433 4677899999999
Q ss_pred ccCCCCCc-chhhhhhhHHHHHHHhhcCCCCCC--ccHHHHH
Q psy13692 460 WGEKVDET-NIESRVWPRACAAAEHLWSSPQPS--NNTKNRI 498 (592)
Q Consensus 460 WsE~vd~~-~l~~~lwPR~~A~AErlWs~~~~~--~~~~~Rl 498 (592)
|+|++++. ++++++|||++|+|||+||+++.+ ++|..||
T Consensus 288 W~E~~~~~~~~~~~~~PR~~a~AE~~Ws~~~~~~~~~f~~rl 329 (329)
T cd06568 288 WTETIRNLDDLEYMAFPRLAGVAEIGWSPQEARDWDDYKVRL 329 (329)
T ss_pred cccccCCHHHHHHHHHhHHHHHHHHHhCCCcCCCHHHHHhhC
Confidence 99999764 789999999999999999998754 6666664
No 7
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=100.00 E-value=4.8e-77 Score=631.07 Aligned_cols=317 Identities=40% Similarity=0.780 Sum_probs=271.8
Q ss_pred CCcccceecCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCCC---CCcHHHHHHHHH
Q psy13692 163 FPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDA---IYTEKMIKNVIE 239 (592)
Q Consensus 163 f~~RGlmLD~sR~f~~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~~---~YT~edi~eIv~ 239 (592)
|+|||+|||+||||+|+++||++||.||++|||+|||||+|+||||++++++|+|+..|++++.. +||++||++||+
T Consensus 1 f~~RG~~lD~aR~~~~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~ 80 (351)
T PF00728_consen 1 FPWRGLMLDVARHFFSVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVA 80 (351)
T ss_dssp SSEEEEEEETSSS-B-HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHH
T ss_pred CCccceeeccCCCCCCHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999998855 999999999999
Q ss_pred HHHHcCCeEEeccCCCCccccccccCCCccccC-CC------cccccccccCCCCCChhHHHHHHHHHHHHhhhcCCCeE
Q psy13692 240 YARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHC-PH------RVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYV 312 (592)
Q Consensus 240 YA~~rGI~VIPEID~PGH~~a~~~~~P~l~~~c-~~------~~~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~lFp~~~~ 312 (592)
||++|||+||||||+|||+++|++++|++...+ .. ........++|||++|+|++|+++|++|++++|+++||
T Consensus 81 yA~~~gI~VIPeid~PGH~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~~~~i 160 (351)
T PF00728_consen 81 YAKERGIEVIPEIDTPGHAEAWLKAYPELGCSAWPEDKSWPNSTCWYPDNGVLDPSNPETYEFLKDLLDEVADLFPSKYI 160 (351)
T ss_dssp HHHHTT-EEEEEEEESSS-HHHHHHHHHHCCCHTTCSSSCEEEETTSEEEEEE-TTSHHHHHHHHHHHHHHHHHHTSSEE
T ss_pred HHHHcCCceeeeccCchHHHHHHHhCchhhccccccccccccccccCCCcccCCCCcHHHHHHHHHHHHHHHhhCCCCeE
Confidence 999999999999999999999999999987531 11 01111223589999999999999999999999999999
Q ss_pred EecCCccccccccCCHHHHHHHHhCCC-ChhhHHHHHHHHHHHHHHhhccceeEeccccccccccCCccccCCCCCCeEE
Q psy13692 313 HLGGDEVDFFCWEQNPEIKAFMSTRQW-DGPQLQSYYMQYLLKAIKTIRKRSVVWEEVFQDWKNVNGDAQAMSMDKDTIV 391 (592)
Q Consensus 313 HiGGDEv~~~~w~~~p~~~~~m~~~g~-~~~~L~~~f~~~v~~~l~~~Gk~~i~W~D~l~~~~~~~g~~~~~~Lpkd~iv 391 (592)
|||||||+..||.++++|+++|+++|+ +..+|+.+|++++.++++++|+++++|+|++.+.++ ...++++++|
T Consensus 161 HiGgDEv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~v~~~g~~~~~W~D~~~~~~~------~~~~~~~~~i 234 (351)
T PF00728_consen 161 HIGGDEVNYNCWNNSPECQAWMKQNGLTDPNDLFQYFVNRLADIVKKHGKKPIIWNDMLDDFPD------ASLLPKDVII 234 (351)
T ss_dssp EEE-TSTTTHHHHCHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHTTSEEEEESTTTTTTCC------GHCSCTTEEE
T ss_pred EeCCcccccccccCCHHHhhHHhhcCCchHHHHHHHHHHHHHHHHHhcCCcEEEEccccccCCc------cccccCCceE
Confidence 999999999999999999999999999 899999999999999999999999999999987321 2358999999
Q ss_pred EecCCCCCCChHHHHHHHHHcCCeEEecC--Ccccccccc--------------cccccccccCCCCCCC-----hhhh-
Q psy13692 392 QVWRGGGLEGASAAVKRVVSAGYKVINSI--GWYLDNLEQ--------------EFETYHGIRVGSIDLT-----PEEK- 449 (592)
Q Consensus 392 ~~W~~~~~~~~~~~~~~~~~~Gy~vI~s~--~~YLD~~~~--------------~W~~~Y~~~P~~~~~~-----~~~~- 449 (592)
++|++.+ ....+..++++||++|+|+ .+|||+... +|.++|+++|...... +.+.
T Consensus 235 ~~W~~~~---~~~~~~~~~~~g~~vI~s~~~~~Yld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (351)
T PF00728_consen 235 QVWNYDW---GPASAQEFAKKGYKVINSPSDYLYLDPGQSPWPEEDGNYWAPFNTWSDFYNWDPAYFNTNSTQIDPAQKS 311 (351)
T ss_dssp EEESSTT---HHHHHHHHHHTTHEEEESTHGTGBTTTTSSTTTSSSSBHTTSTHHHHHHHHHHHCHCTTTCSTTTTHHHC
T ss_pred EEeeccc---cchhhhHHHHhcCcEEEcCCCceEEccCcCCCCccCcccccccccccccccccccccccccchhhhhccc
Confidence 9999864 1456788999999999998 699998643 3567788888655432 3444
Q ss_pred ccccccceeeccCCC-CCcchhhhhhhHHHHHHHhhcCCC
Q psy13692 450 KLFLGGEACMWGEKV-DETNIESRVWPRACAAAEHLWSSP 488 (592)
Q Consensus 450 ~~vlGge~~lWsE~v-d~~~l~~~lwPR~~A~AErlWs~~ 488 (592)
++|+||++|||+|.+ +..++++++|||++|+|||+||+.
T Consensus 312 ~~i~G~~~~~W~E~~~~~~~l~~~~~Pr~~A~AE~~Ws~~ 351 (351)
T PF00728_consen 312 ERILGGEAALWSENIRDEEDLDYRLWPRLAALAERLWSPQ 351 (351)
T ss_dssp CCEEEEEEEEETTTTTSHHHHHHHHTTHHHHHHHHHHSS-
T ss_pred CCCceeEEEeecCCCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 589999999999999 667799999999999999999973
No 8
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=5e-76 Score=613.55 Aligned_cols=294 Identities=40% Similarity=0.736 Sum_probs=261.7
Q ss_pred cccceecCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCC----CCCCCCCCcHHHHHHHHHH
Q psy13692 165 HRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKG----AFGPDAIYTEKMIKNVIEY 240 (592)
Q Consensus 165 ~RGlmLD~sR~f~~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~G----ay~p~~~YT~edi~eIv~Y 240 (592)
|||+|||+||||+|+++||++||.||++|||+|||||+||||||+|+++||+|+.+| ++++.++||++||++||+|
T Consensus 1 ~RG~mlD~aR~~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~y 80 (303)
T cd02742 1 IRGIMLDVSRHFLSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEY 80 (303)
T ss_pred CcceeeeccccCcCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999988 5667799999999999999
Q ss_pred HHHcCCeEEeccCCCCccccccccCCCccccCCC-cccccccccCCCCCChhHHHHHHHHHHHHhhhcCCCeEEecCCcc
Q psy13692 241 ARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPH-RVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEV 319 (592)
Q Consensus 241 A~~rGI~VIPEID~PGH~~a~~~~~P~l~~~c~~-~~~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~lFp~~~~HiGGDEv 319 (592)
|++|||+||||||+|||+.+|++++|++.+.|.. ...+. ..++|||++|++|+|+++|++|++++||++||||||||+
T Consensus 81 A~~rgI~viPEiD~PGH~~a~~~~~p~l~~~~~~~~~~~~-~~~~l~~~~~~t~~fl~~l~~e~~~lf~~~~iHiGgDE~ 159 (303)
T cd02742 81 AAARGIEVIPEIDMPGHSTAFVKSFPKLLTECYAGLKLRD-VFDPLDPTLPKGYDFLDDLFGEIAELFPDRYLHIGGDEA 159 (303)
T ss_pred HHHcCCEEEEeccchHHHHHHHHhCHHhccCccccCCCCC-CCCccCCCCccHHHHHHHHHHHHHHhCCCCeEEecceec
Confidence 9999999999999999999999999999987765 11111 246899999999999999999999999999999999999
Q ss_pred ccccccCCHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhccceeEeccccccccccCCccccCCCCCCeEEEecCCCCC
Q psy13692 320 DFFCWEQNPEIKAFMSTRQWDGPQLQSYYMQYLLKAIKTIRKRSVVWEEVFQDWKNVNGDAQAMSMDKDTIVQVWRGGGL 399 (592)
Q Consensus 320 ~~~~w~~~p~~~~~m~~~g~~~~~L~~~f~~~v~~~l~~~Gk~~i~W~D~l~~~~~~~g~~~~~~Lpkd~iv~~W~~~~~ 399 (592)
... .+..+|+.+|+++++++++++|+++++|+|++.. ...++++++|++|.+.+.
T Consensus 160 ~~~----------------~~~~~l~~~f~~~~~~~v~~~g~~~~~W~d~~~~---------~~~l~~~~ii~~W~~~~~ 214 (303)
T cd02742 160 HFK----------------QDRKHLMSQFIQRVLDIVKKKGKKVIVWQDGFDK---------KMKLKEDVIVQYWDYDGD 214 (303)
T ss_pred CCC----------------CCHHHHHHHHHHHHHHHHHHcCCeEEEecccccC---------CCCCCCCeEEEEccCCCC
Confidence 754 1346789999999999999999999999999875 236899999999999642
Q ss_pred CChHHHHHHHHHcCCeEEecCCccccc--ccc-cccccccccCCCCCCChhhhccccccceeeccCCCCCc-chhhhhhh
Q psy13692 400 EGASAAVKRVVSAGYKVINSIGWYLDN--LEQ-EFETYHGIRVGSIDLTPEEKKLFLGGEACMWGEKVDET-NIESRVWP 475 (592)
Q Consensus 400 ~~~~~~~~~~~~~Gy~vI~s~~~YLD~--~~~-~W~~~Y~~~P~~~~~~~~~~~~vlGge~~lWsE~vd~~-~l~~~lwP 475 (592)
. ....+.+++++||+||+|+++||++ ..+ +|+++|+++|... ..++.+++|+||++|||+|++++. ++++++||
T Consensus 215 ~-~~~~~~~~~~~G~~vi~s~~~yly~~~~~~~~~~~~y~~~p~~~-~~~~~~~~vlG~~~~lW~E~~~~~~~~~~~~~p 292 (303)
T cd02742 215 K-YNVELPEAAAKGFPVILSNGYYLDIFIDGALDARKVYKNDPLAV-PTPQQKDLVLGVIACLWGETVKDTKTLQYRFWP 292 (303)
T ss_pred c-chHHHHHHHHCCCCEEEeCCceeeeeCCCCCCHHHHhCCCCCCC-CCcccccceEEEEEeeeccccCCHHHHHHHHHH
Confidence 1 1356788999999999999999887 222 8999999999653 345667889999999999999887 79999999
Q ss_pred HHHHHHHhhcC
Q psy13692 476 RACAAAEHLWS 486 (592)
Q Consensus 476 R~~A~AErlWs 486 (592)
|++|+||++||
T Consensus 293 r~~a~AE~~Ws 303 (303)
T cd02742 293 RALAVAERSWS 303 (303)
T ss_pred HHHHHHHHhhC
Confidence 99999999997
No 9
>COG3525 Chb N-acetyl-beta-hexosaminidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-72 Score=609.74 Aligned_cols=399 Identities=28% Similarity=0.460 Sum_probs=344.4
Q ss_pred CCCCeEEEEeCCeEEEEecChhhHHHHHHHHhhCCC-CCCCCCceeeeeeEEecCCCCCcccceecCCCCCCCHHHHHHH
Q psy13692 107 MDEKYTLEIKNSSCLLTSQSIWGILRGLETFSQLPI-PAPNGDQLIIRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQ 185 (592)
Q Consensus 107 ~~EsY~L~I~~~~i~I~a~t~~Ga~~gl~TL~QL~~-~~~~~~~~~i~~~~I~D~P~f~~RGlmLD~sR~f~~v~~ik~~ 185 (592)
..|.|+|.+++.+|+|+|.+..|++||+.||.||+. .+...|.+.+|.++|.|+|||.|||+|+|+||||++++.+|++
T Consensus 204 ~~e~y~la~~d~ai~v~a~~~aG~~y~~~tl~qL~t~a~s~qg~~~~p~~~I~DaPRf~~rGllvDvaRqf~s~~~vk~~ 283 (732)
T COG3525 204 GEEAYRLAINDKAIKVTAHDLAGLFYADGTLLQLDTSADSFQGDIRFPAVTIVDAPRFAWRGLLVDVARQFHSTDDVKRL 283 (732)
T ss_pred cchhheeecccceeEEeeccccchhhhHHHHHhhhccccccCCCeeeeeeecccCcccchhhhhHhhhhhcCCHHHHHHH
Confidence 589999999999999999999999999999999986 3445567789999999999999999999999999999999999
Q ss_pred HHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCC----------------CCCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 186 LDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGP----------------DAIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 186 Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p----------------~~~YT~edi~eIv~YA~~rGI~VI 249 (592)
||.|+.+|||+||||++|||+||+|++++|+|+..|+++- +++||++++++|++||+.|+|+||
T Consensus 284 Id~laa~Kln~~hlHLtddegwrleIk~~PkLT~iga~R~~de~~~Pq~g~~pe~~ggfytqd~~relv~yAsar~Itvi 363 (732)
T COG3525 284 IDQLAAHKLNVLHLHLTDDEGWRLEIKRYPKLTTIGAWRIPDEPDLPQLGYGPERMGGFYTQDDIRELVAYASARQITVI 363 (732)
T ss_pred HHHHHHhhcceEEEeeccCcceeeccccCCccccccccccCCCcCCcccccCcccccCcccHHHHHHHHHHHhhcCceec
Confidence 9999999999999999999999999999999999999752 289999999999999999999999
Q ss_pred eccCCCCccccccccCCCccc---cCCCcccccc-cccCCCCCChhHHHHHHHHHHHHhhhcCCCeEEecCCcccccccc
Q psy13692 250 PEIDTPGHTDSMEPGMPQIHC---HCPHRVEGKT-FVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWE 325 (592)
Q Consensus 250 PEID~PGH~~a~~~~~P~l~~---~c~~~~~g~~-~~~~lnp~~~~ty~fl~~ll~Ev~~lFp~~~~HiGGDEv~~~~w~ 325 (592)
||||+|||+.+.+.++|++.. .|....+... ....|||+.+-+|+|++++++||.++||+.+|||||||+..+.|+
T Consensus 364 PeiD~PgHa~aav~A~p~~~l~~a~~ds~~sv~~~~n~~ln~tl~~t~~fldkv~dEv~~lfPs~~iHiGgDE~~~~qwk 443 (732)
T COG3525 364 PEIDMPGHARAAVVAYPDLNLGRADPDSYDSVQAYLNPVLNPTLDPTYQFLDKVLDEVADLFPSTTIHIGGDEFIDGQWK 443 (732)
T ss_pred CCcCCcchhhhhhhhCccccccccCCCcchhhhhcccccccccccHHHHHHHHHHHHHHHhCCcceEEeccchhccCeee
Confidence 999999999999999996542 1222111110 023689999999999999999999999999999999999999999
Q ss_pred C-CHHHHHHHHhCCC-ChhhHHHHHHHHHHHHHHhhccceeEeccccccccccCCccccCCCCCCeEEEecCCCCCCChH
Q psy13692 326 Q-NPEIKAFMSTRQW-DGPQLQSYYMQYLLKAIKTIRKRSVVWEEVFQDWKNVNGDAQAMSMDKDTIVQVWRGGGLEGAS 403 (592)
Q Consensus 326 ~-~p~~~~~m~~~g~-~~~~L~~~f~~~v~~~l~~~Gk~~i~W~D~l~~~~~~~g~~~~~~Lpkd~iv~~W~~~~~~~~~ 403 (592)
. +|.|++.|++.|. +..+|+.+|++++.++++++|++.++|+|.+.. .. .++..+-+++.|++|.+..
T Consensus 444 ~~sp~~q~l~~~~G~~d~~~lq~~fi~q~~k~l~~~Gr~~igW~e~~~~-~~----~~~~~~t~~~~vm~W~~~~----- 513 (732)
T COG3525 444 ASSPLVQALMEKLGNKDTFELQSYFITQVGKTLASKGRRLIGWDEGAHG-GD----VNGTALTANVTVMSWYGKD----- 513 (732)
T ss_pred ccCHHHHHHHHHhccCCcchhhHHHHHHHHHHHHhcCceEEeecchhcc-CC----CccccccCceEEEEEecch-----
Confidence 8 9999999999999 779999999999999999999999999999875 11 1122234899999999852
Q ss_pred HHHHHHHHcCCeEEecCC--cccccccc--------ccc------c-cccccCCCCCC-ChhhhccccccceeeccCCCC
Q psy13692 404 AAVKRVVSAGYKVINSIG--WYLDNLEQ--------EFE------T-YHGIRVGSIDL-TPEEKKLFLGGEACMWGEKVD 465 (592)
Q Consensus 404 ~~~~~~~~~Gy~vI~s~~--~YLD~~~~--------~W~------~-~Y~~~P~~~~~-~~~~~~~vlGge~~lWsE~vd 465 (592)
..-.++++||.||++++ .|||+.+. .|. + .|.++|..... .++.++.++|.++|+|+|++.
T Consensus 514 -~ai~~akqg~dvv~tp~~~~ylD~~q~~~peepg~~~a~t~~l~r~~y~~~~~g~~~~~de~~k~~~G~q~~lWse~~~ 592 (732)
T COG3525 514 -KAIELAKQGYDVVLTPAQFVYLDMLQIAAPEEPGYSWATTTPLERNKYAYDFAGKQPINDELAKRILGVQAALWSEHIQ 592 (732)
T ss_pred -hhHHHHhhcccccccchhhhhhhhhcccccccCCCccccccccchhhhhhcccCcccCChHHhhhhhhhHHHHHHHHhh
Confidence 33568999999999984 79998643 342 2 56666654333 378889999999999999987
Q ss_pred Cc-chhhhhhhHHHHHHHhhcCCCCCC--ccHHHHHHHHHHHHHHCCCCccCCC
Q psy13692 466 ET-NIESRVWPRACAAAEHLWSSPQPS--NNTKNRITEHVCRLKRRNVQAAPVY 516 (592)
Q Consensus 466 ~~-~l~~~lwPR~~A~AErlWs~~~~~--~~~~~Rl~~~~~rl~~rGi~a~p~~ 516 (592)
.. .+.+++|||++|+|||.|++...+ ..+..|+..+..+++..+|++.+.+
T Consensus 593 ~~~~f~~~vfprl~a~aEraw~p~a~~Dw~~~~~r~~~~~~l~~~~~~~~~~~w 646 (732)
T COG3525 593 TRGRFEYMVFPRLAAAAERAWTPMAFNDWLYYLDRLSAQLPLLVLISIPYNAWW 646 (732)
T ss_pred hhhHHHHHhcchHHHHHHhhCCchhhcchhhhhhhcchhcchhhhhcccccccc
Confidence 54 478899999999999999998765 6678899999999999998877765
No 10
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=2e-70 Score=576.95 Aligned_cols=292 Identities=28% Similarity=0.463 Sum_probs=251.0
Q ss_pred CcccceecCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCC---------------CCCCC
Q psy13692 164 PHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAF---------------GPDAI 228 (592)
Q Consensus 164 ~~RGlmLD~sR~f~~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay---------------~p~~~ 228 (592)
.+||+|||+||||+|+++||++||.||++|||+|||||+| +||++++.+|+++..|++ ++.++
T Consensus 1 ~~RG~mLD~aR~~~~~~~ik~~id~ma~~K~N~lhlHltD--~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (326)
T cd06564 1 EVRGFMLDVGRKYYSMDFLKDIIKTMSWYKMNDLQLHLND--NLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGY 78 (326)
T ss_pred CcceeEEEccCCCCCHHHHHHHHHHHHHcCCceEEEeecC--CcccccCCCchhhhhhhhhccccccccccCCCCCCCCc
Confidence 4899999999999999999999999999999999999999 899999999999976654 35689
Q ss_pred CcHHHHHHHHHHHHHcCCeEEeccCCCCccccccccCCCccccCCCcccccccccCCCCCChhHHHHHHHHHHHHhhhcC
Q psy13692 229 YTEKMIKNVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFP 308 (592)
Q Consensus 229 YT~edi~eIv~YA~~rGI~VIPEID~PGH~~a~~~~~P~l~~~c~~~~~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~lFp 308 (592)
||++||++||+||++|||+||||||+|||+.+|++++|++.+.|.. .+ ...++|||++|++|+|+++|++|++++|+
T Consensus 79 YT~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~~~pel~~~~~~-~~--~~~~~l~~~~~~t~~f~~~l~~E~~~~f~ 155 (326)
T cd06564 79 YTKEEFKELIAYAKDRGVNIIPEIDSPGHSLAFTKAMPELGLKNPF-SK--YDKDTLDISNPEAVKFVKALFDEYLDGFN 155 (326)
T ss_pred ccHHHHHHHHHHHHHcCCeEeccCCCcHHHHHHHHhhHHhcCCCcc-cC--CCcccccCCCHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999865431 11 12578999999999999999999999999
Q ss_pred --CCeEEecCCccccccccCCHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhccceeEeccccccccccCCccccCCCC
Q psy13692 309 --ESYVHLGGDEVDFFCWEQNPEIKAFMSTRQWDGPQLQSYYMQYLLKAIKTIRKRSVVWEEVFQDWKNVNGDAQAMSMD 386 (592)
Q Consensus 309 --~~~~HiGGDEv~~~~w~~~p~~~~~m~~~g~~~~~L~~~f~~~v~~~l~~~Gk~~i~W~D~l~~~~~~~g~~~~~~Lp 386 (592)
++||||||||+... .+..+++.+|+++++++++++||++++|+|++....+ ...++
T Consensus 156 ~~~~~~HiGgDE~~~~----------------~~~~~~~~~f~~~~~~~v~~~gk~~~~W~d~~~~~~~------~~~l~ 213 (326)
T cd06564 156 PKSDTVHIGADEYAGD----------------AGYAEAFRAYVNDLAKYVKDKGKTPRVWGDGIYYKGD------TTVLS 213 (326)
T ss_pred CCCCEEEecccccccc----------------CccHHHHHHHHHHHHHHHHHcCCeEEEeCCcccCCCC------cccCC
Confidence 99999999999764 1346788999999999999999999999999875221 14689
Q ss_pred CCeEEEecCCCCCCChHHHHHHHHHcCCeEEecCC--cccccccc------cccccccccC-CCCC----CChhhhcccc
Q psy13692 387 KDTIVQVWRGGGLEGASAAVKRVVSAGYKVINSIG--WYLDNLEQ------EFETYHGIRV-GSID----LTPEEKKLFL 453 (592)
Q Consensus 387 kd~iv~~W~~~~~~~~~~~~~~~~~~Gy~vI~s~~--~YLD~~~~------~W~~~Y~~~P-~~~~----~~~~~~~~vl 453 (592)
++++|++|++.+ ..+.+++++||+||+|++ +|||+... +|+++|++.+ ..+. ..++++++|+
T Consensus 214 ~~~iv~~W~~~~-----~~~~~~~~~G~~vI~s~~~~~Y~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~il 288 (326)
T cd06564 214 KDVIINYWSYGW-----ADPKELLNKGYKIINTNDGYLYIVPGAGYYGDYLNTEDIYNNWTPNKFGGTNATLPEGDPQIL 288 (326)
T ss_pred CCeEEEeCCCcc-----cCHHHHHHCCCcEEEeCCCcEEEeCCCccCCCccCHHHHHhcCCccccCCCCccCCCCCCCcc
Confidence 999999999864 345789999999999985 67776431 5788887544 3333 2355678999
Q ss_pred ccceeeccCCCCC----cchhhhhhhHHHHHHHhhcCC
Q psy13692 454 GGEACMWGEKVDE----TNIESRVWPRACAAAEHLWSS 487 (592)
Q Consensus 454 Gge~~lWsE~vd~----~~l~~~lwPR~~A~AErlWs~ 487 (592)
||++|||+|+++. .++++++|||++|+||++|++
T Consensus 289 G~~~~lW~E~~~~~~t~~~~~~~~~pr~~a~Ae~~W~~ 326 (326)
T cd06564 289 GGMFAIWNDDSDAGISEVDIYDRIFPALPAFAEKTWGG 326 (326)
T ss_pred hhheeeecCCCCcCcCHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999964 578999999999999999985
No 11
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=4.2e-51 Score=425.60 Aligned_cols=289 Identities=20% Similarity=0.241 Sum_probs=227.0
Q ss_pred cccceecCCC-CCCCHHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHH
Q psy13692 165 HRGLLVDGSR-HYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARL 243 (592)
Q Consensus 165 ~RGlmLD~sR-~f~~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~ 243 (592)
+||+|||+|| +|+++++||++||.||.+|+|+||||++| +||+ +++|++... .+.||++||++|++||++
T Consensus 1 ~RG~mlD~~R~~~~~~~~lk~~id~ma~~k~N~l~lhl~D--~f~~--~~~p~~~~~-----~~~yT~~ei~ei~~yA~~ 71 (301)
T cd06565 1 FRGVHLDLKRNAVPKVSYLKKLLRLLALLGANGLLLYYED--TFPY--EGEPEVGRM-----RGAYTKEEIREIDDYAAE 71 (301)
T ss_pred CceEEEecCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEec--ceec--CCCcccccC-----CCCcCHHHHHHHHHHHHH
Confidence 5999999999 99999999999999999999999999999 5666 468888641 266999999999999999
Q ss_pred cCCeEEeccCCCCccccccccCCCccccCCCcccccccccCCCCCChhHHHHHHHHHHHHhhhcCCCeEEecCCcccccc
Q psy13692 244 RGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFC 323 (592)
Q Consensus 244 rGI~VIPEID~PGH~~a~~~~~P~l~~~c~~~~~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~lFp~~~~HiGGDEv~~~~ 323 (592)
|||+||||||+|||+++|++ +|++...|... .+.++|||++|+||+|+++|++|++++|++++|||||||+...+
T Consensus 72 ~gI~vIPeid~pGH~~~~l~-~~~~~~l~~~~----~~~~~l~~~~~~t~~fi~~li~ev~~~f~s~~~HIG~DE~~~~g 146 (301)
T cd06565 72 LGIEVIPLIQTLGHLEFILK-HPEFRHLREVD----DPPQTLCPGEPKTYDFIEEMIRQVLELHPSKYIHIGMDEAYDLG 146 (301)
T ss_pred cCCEEEecCCCHHHHHHHHh-CcccccccccC----CCCCccCCCChhHHHHHHHHHHHHHHhCCCCeEEECCCcccccC
Confidence 99999999999999999987 56665444221 11578999999999999999999999999999999999998643
Q ss_pred ccCCHHHHHHHHhCCC-ChhhHHHHHHHHHHHHHHhhccceeEecccccc---ccccCCccccCCCCCCeEEEecCCCCC
Q psy13692 324 WEQNPEIKAFMSTRQW-DGPQLQSYYMQYLLKAIKTIRKRSVVWEEVFQD---WKNVNGDAQAMSMDKDTIVQVWRGGGL 399 (592)
Q Consensus 324 w~~~p~~~~~m~~~g~-~~~~L~~~f~~~v~~~l~~~Gk~~i~W~D~l~~---~~~~~g~~~~~~Lpkd~iv~~W~~~~~ 399 (592)
. ++.++ +.+. +..+|+..|+++++++++++|+++++|+|++.. .+.. ...||+++++++|.+...
T Consensus 147 ~--~~~~~----~~~~~~~~~l~~~~~~~v~~~v~~~g~~~~~W~D~~~~~~~~~~~-----~~~l~~~v~~~~W~y~~~ 215 (301)
T cd06565 147 R--GRSLR----KHGNLGRGELYLEHLKKVLKIIKKRGPKPMMWDDMLRKLSIEPEA-----LSGLPKLVTPVVWDYYAD 215 (301)
T ss_pred C--CHHHH----HhcCCCHHHHHHHHHHHHHHHHHHcCCEEEEEhHHhcCCCCChHH-----HhCCCCCeEEEEecCcCC
Confidence 2 33333 3344 788999999999999999999999999999876 2221 347999999999999653
Q ss_pred CCh-HHHHHHHHHcCCeEEecCC-ccccccccccccccc-cc----CCCCCCChhhhccccccceeeccCCCCCcchhhh
Q psy13692 400 EGA-SAAVKRVVSAGYKVINSIG-WYLDNLEQEFETYHG-IR----VGSIDLTPEEKKLFLGGEACMWGEKVDETNIESR 472 (592)
Q Consensus 400 ~~~-~~~~~~~~~~Gy~vI~s~~-~YLD~~~~~W~~~Y~-~~----P~~~~~~~~~~~~vlGge~~lWsE~vd~~~l~~~ 472 (592)
... ........+.|.+.+++++ |+ |..++. .+ ....-.....+..+.|...+.|+++... +....
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~g~~~-------w~~~~~~~~~~~~n~~~~~~~~~~~~~~G~~~T~W~d~g~~-~~~~~ 287 (301)
T cd06565 216 LDEHDRPIGLWKKYGSVFAVAWGASA-------WKGATPPNDKHLENIKSWLKAAKKNGVQGILLTGWGDYGHE-AVLCE 287 (301)
T ss_pred cchhhHhHHHHHHhCCCceEeeeech-------hccCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEecCCCCCc-ccHHH
Confidence 222 2345567778888888763 43 333320 00 0000012234566999999999998644 44588
Q ss_pred hhhHHHHHHHhhcC
Q psy13692 473 VWPRACAAAEHLWS 486 (592)
Q Consensus 473 lwPR~~A~AErlWs 486 (592)
++|.+.+.||..|+
T Consensus 288 ~~p~~~~~~~~~~~ 301 (301)
T cd06565 288 LLPGLIPSLALALG 301 (301)
T ss_pred HHHHHHHHHHHhcC
Confidence 89999999999985
No 12
>PF14845 Glycohydro_20b2: beta-acetyl hexosaminidase like; PDB: 1O7A_B 2GJX_C 2GK1_D 1NOW_B 1NOU_B 3LMY_B 1NP0_A 3S6T_A 3OZO_A 3NSN_A ....
Probab=99.76 E-value=7.1e-18 Score=154.64 Aligned_cols=119 Identities=29% Similarity=0.443 Sum_probs=79.8
Q ss_pred cccccccceEEEcceEEEec-cCEEEEeCCCC----chHHHHHHHHHHHHHHhcccccccccccc-cCCCccCcceEEEE
Q psy13692 20 FYERLVTNKQVLKDEYVGVL-EPFLFKVSGKS----CDILEDAILRYTEILKTNWRNLTKFDSVV-TAPNIVGKTIKLKI 93 (592)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~-~~f~~~~~~~~----~~~l~~a~~r~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~i 93 (592)
+||+| +++++|++.+.|+ .+|+|...+.. +++|++|++||.+.|+............. ........++.+.|
T Consensus 1 lWP~P--~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~l~~A~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~I 78 (128)
T PF14845_consen 1 LWPKP--QSISLGSTVFSLDPSNFKFNFSGSSSNSCSDILQEAIDRYLKLIFKQNPSPCASHSRGSSFKPKSGYLSSLEI 78 (128)
T ss_dssp -SS----SEEEEECEEEEEECCCEEEEEETTTSTTTHHHHHHHHHHHHHHHHT--TS-TT----S-----BE-ECEEEEE
T ss_pred CCCCC--cEEEECCceEEEchhhEEEEeCCCCcccHHHHHHHHHHHHHHHHhhhcccccccCCcccccccCCCcceEEEE
Confidence 69999 6699999999999 58999975443 49999999999999998765432211100 00002245678899
Q ss_pred EEecCCCC-CCCCCCCCCeEEEE-eCC-eEEEEecChhhHHHHHHHHhhC
Q psy13692 94 RLLNECEK-YPHIDMDEKYTLEI-KNS-SCLLTSQSIWGILRGLETFSQL 140 (592)
Q Consensus 94 ~v~~~~~~-~~~~~~~EsY~L~I-~~~-~i~I~a~t~~Ga~~gl~TL~QL 140 (592)
+|.+.+.. .+.+++||+|+|+| +.+ .|+|+|+++|||+||||||+||
T Consensus 79 ~v~~~~~~~~l~~~~DESY~L~v~s~~~~~~I~A~tv~GalrgLETlsQL 128 (128)
T PF14845_consen 79 TVTSDDEDSELQLGMDESYSLSVPSTNGQATITANTVWGALRGLETLSQL 128 (128)
T ss_dssp EESSSSTTSS--TT----EEEEETSSSEEEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEecCCccccCCCCCCCEEEEEecCCceEEEEECChhhhhHHHHHHhhC
Confidence 99654321 16899999999999 666 5999999999999999999997
No 13
>PF02838 Glyco_hydro_20b: Glycosyl hydrolase family 20, domain 2; InterPro: IPR015882 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside []. This entry represents the alpha and beta subunit of beta-N-acetylhexosaminidase. It contains a similar fold but lacks the catalytic centre.; GO: 0004563 beta-N-acetylhexosaminidase activity, 0005975 carbohydrate metabolic process; PDB: 3SUT_A 3SUS_A 3GH7_A 3SUR_A 3SUW_A 3SUV_A 3SUU_A 3GH5_A 3GH4_A 2J4G_B ....
Probab=99.48 E-value=7.5e-13 Score=120.21 Aligned_cols=122 Identities=21% Similarity=0.169 Sum_probs=82.7
Q ss_pred ccccccccceEEEcceEEEeccCEEEEeCCCCchHHHHHHHHHHHHHHhcccccccccccccCCCccCcceEEEEEEecC
Q psy13692 19 NFYERLVTNKQVLKDEYVGVLEPFLFKVSGKSCDILEDAILRYTEILKTNWRNLTKFDSVVTAPNIVGKTIKLKIRLLNE 98 (592)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~l~~a~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~ 98 (592)
+++|+| +++..+++.+.|+..+.+..... .+..+.+++.+.|....+...... ... ....|.+...
T Consensus 3 ~iiP~P--~~~~~~~g~~~l~~~~~i~~~~~---~~~~~~~~l~~~l~~~~g~~~~~~-------~~~--~~~~i~~~~~ 68 (124)
T PF02838_consen 3 SIIPQP--QSITLTGGTFTLPQSTKIVVDDP---ELKAAAERLQDILKRLTGISLSSS-------GSP--NKIDIRLLLD 68 (124)
T ss_dssp --SS----SEEEEEEEEEEETTTEEEEETTC---SHHHHHHHHHHHHHHHHTECCCEC-------SET--TSEEEEEECT
T ss_pred cEEccc--cEEEECCCEEEECCCcEEEECCc---ccHHHHHHHHHHHHHHhCCccccc-------CCC--CCceEEEeec
Confidence 578888 88999999999999999998863 356677777777764433221110 001 1223343211
Q ss_pred CCCCCCCCCCCCeEEEEeCCeEEEEecChhhHHHHHHHHhhCCCCCCCCCceeeeeeEEecC
Q psy13692 99 CEKYPHIDMDEKYTLEIKNSSCLLTSQSIWGILRGLETFSQLPIPAPNGDQLIIRVQTIEDF 160 (592)
Q Consensus 99 ~~~~~~~~~~EsY~L~I~~~~i~I~a~t~~Ga~~gl~TL~QL~~~~~~~~~~~i~~~~I~D~ 160 (592)
.+ ....+|+|+|+|++++|+|+|.+..|+|||++||.||+. ...+ ..||+++|+|+
T Consensus 69 ~~---~~~~~E~Y~L~i~~~~I~I~a~~~~G~~yg~qTL~Qll~-~~~~--~~lp~~~I~D~ 124 (124)
T PF02838_consen 69 DD---AGLGEEGYRLSISPKGITIEASDPAGLFYGLQTLRQLLR-QSGN--GTLPCVEIEDY 124 (124)
T ss_dssp TC---CTSTTT-EEEEEESSEEEEEESSHHHHHHHHHHHHHHSB-TCS---CEEEEEEEEE-
T ss_pred CC---CCCCCcceEEEEECCEEEEEEcCchHHHHHHHHHHHHhh-ccCC--CccceEEEEeC
Confidence 11 234699999999999999999999999999999999997 3222 28999999996
No 14
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.72 E-value=0.0017 Score=68.58 Aligned_cols=189 Identities=18% Similarity=0.225 Sum_probs=114.7
Q ss_pred cccceecCCC--CCCCHHHHHHHHHHHhhCCCcEEEEEeecCCccc-cccccCCccccC-CCCCCCCCCcHHHHHHHHHH
Q psy13692 165 HRGLLVDGSR--HYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFP-YESKKFPSLSLK-GAFGPDAIYTEKMIKNVIEY 240 (592)
Q Consensus 165 ~RGlmLD~sR--~f~~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp-~e~~~~P~Lt~~-Gay~p~~~YT~edi~eIv~Y 240 (592)
.||+=|++.. .+...+.+.++|+.|...+||++-++..- .|-. |.++-.|-.... |. +...-..+=++.+|+-
T Consensus 2 ~RgvWi~~~~~~~~~~~~~~~~~l~~l~~~~~N~V~~qVr~-~gda~Y~S~~~p~s~~~~g~--~~~~pg~DpL~~~I~e 78 (311)
T PF02638_consen 2 FRGVWISTVANIDWPSKEQIDEMLDDLKSAGFNAVFVQVRP-RGDALYPSDIEPWSGYLTGK--QGKDPGFDPLEFMIEE 78 (311)
T ss_pred eEEEEEeecCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEEe-CcEEEecccccccccccCCC--CCCCCCccHHHHHHHH
Confidence 5888888865 33467899999999999999999888764 2333 345555522110 11 1111134669999999
Q ss_pred HHHcCCeEEeccC--CCCcc-ccccccCCCccccC-CC--c----ccccccccCCCCCChhHHHHHHHHHHHHhhhcCCC
Q psy13692 241 ARLRGIRVIPEID--TPGHT-DSMEPGMPQIHCHC-PH--R----VEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPES 310 (592)
Q Consensus 241 A~~rGI~VIPEID--~PGH~-~a~~~~~P~l~~~c-~~--~----~~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~lFp~~ 310 (592)
|++|||+|.+=|. +.++. ..+...+|+..... .+ . ..+. ..-|||.+|++.+|+.+++.|++.-.+-.
T Consensus 79 aHkrGlevHAW~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~lnP~~PeVr~~i~~~v~Eiv~~YdvD 156 (311)
T PF02638_consen 79 AHKRGLEVHAWFRVGFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGG--YYWLNPGHPEVRDYIIDIVKEIVKNYDVD 156 (311)
T ss_pred HHHcCCEEEEEEEeecCCCchhhhhhcCchhheecCCCceeecccCCCC--ceEECCCCHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999998872 22222 12334456543211 11 0 0122 23599999999999999999999987755
Q ss_pred eEEecCCcccc--ccc-cCCHHHHHHHHhCCC----Chh---------hHHHHHHHHHHHHHHhhc
Q psy13692 311 YVHLGGDEVDF--FCW-EQNPEIKAFMSTRQW----DGP---------QLQSYYMQYLLKAIKTIR 360 (592)
Q Consensus 311 ~~HiGGDEv~~--~~w-~~~p~~~~~m~~~g~----~~~---------~L~~~f~~~v~~~l~~~G 360 (592)
=||+ |-... ..+ .+.+....|.+..|. +.. +--..|++++.+.+++.+
T Consensus 157 GIhl--Ddy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~k 220 (311)
T PF02638_consen 157 GIHL--DDYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIK 220 (311)
T ss_pred eEEe--cccccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5554 32221 111 123345566666542 111 223557777777777654
No 15
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=96.93 E-value=0.0078 Score=63.63 Aligned_cols=169 Identities=18% Similarity=0.220 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEeccCCCCcc
Q psy13692 179 IKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVIPEIDTPGHT 258 (592)
Q Consensus 179 v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VIPEID~PGH~ 258 (592)
.+.+.++|+.+...++|.+-+-+.||.|.-.--...|...+.|+..+ + ..|+++|++.++++||.+|--|-++-=.
T Consensus 12 ~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~---~-i~D~~~l~~~l~e~gIY~IARIv~FkD~ 87 (316)
T PF13200_consen 12 PERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKP---Y-IKDLKALVKKLKEHGIYPIARIVVFKDP 87 (316)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccc---c-ccCHHHHHHHHHHCCCEEEEEEEEecCh
Confidence 46789999999999999999999999986332234666666777543 2 4799999999999999999888666422
Q ss_pred ccccccCCCccccCCC-ccccc-ccccCCCCCChhHHHHHHHHHHHHhhhcCCCeEEecCCccccccccCCHHHHHHHHh
Q psy13692 259 DSMEPGMPQIHCHCPH-RVEGK-TFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQNPEIKAFMST 336 (592)
Q Consensus 259 ~a~~~~~P~l~~~c~~-~~~g~-~~~~~lnp~~~~ty~fl~~ll~Ev~~lFp~~~~HiGGDEv~~~~w~~~p~~~~~m~~ 336 (592)
. ....+|++...-.+ .+|.. ....-+||.++++.+.+-+|-+|.+.+ |-||+.++-- +-|. ...++.
T Consensus 88 ~-la~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~--------GFdEIqfDYI-RFP~-~~~~~~ 156 (316)
T PF13200_consen 88 V-LAEAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKL--------GFDEIQFDYI-RFPD-EGRLSG 156 (316)
T ss_pred H-HhhhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHc--------CCCEEEeeee-ecCC-CCcccc
Confidence 2 22347887642111 22211 113469999999999999999998875 5555544211 1111 000011
Q ss_pred CCC-------ChhhHHHHHHHHHHHHHHhhccc
Q psy13692 337 RQW-------DGPQLQSYYMQYLLKAIKTIRKR 362 (592)
Q Consensus 337 ~g~-------~~~~L~~~f~~~v~~~l~~~Gk~ 362 (592)
..+ +..+.-..|++.+.+.++..|..
T Consensus 157 l~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~~v~ 189 (316)
T PF13200_consen 157 LDYSENDTEESRVDAITDFLAYAREELHPYGVP 189 (316)
T ss_pred cccCCCCCcchHHHHHHHHHHHHHHHHhHcCCC
Confidence 111 12355678999999999988764
No 16
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.62 E-value=0.084 Score=57.73 Aligned_cols=143 Identities=23% Similarity=0.236 Sum_probs=91.9
Q ss_pred CCcccceec--CCCCCCCHHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccC-CCCCCCCCCcHHHHHHHHH
Q psy13692 163 FPHRGLLVD--GSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLK-GAFGPDAIYTEKMIKNVIE 239 (592)
Q Consensus 163 f~~RGlmLD--~sR~f~~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~-Gay~p~~~YT~edi~eIv~ 239 (592)
=+.||+=|| .++..+.-..++++||.+..+.+|++-.-+..+-.=-|.+...|.-... |......- .+=+..+|+
T Consensus 45 ~eiRGvWltn~~~~v~~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g--~DpLa~~I~ 122 (418)
T COG1649 45 QEIRGVWLTNADSRVLFQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPG--YDPLAFVIA 122 (418)
T ss_pred ccceeEEEecCCCcccccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCC--CChHHHHHH
Confidence 467999998 5677788999999999999999999987665432212334444433210 10000111 245799999
Q ss_pred HHHHcCCeEEeccCCCCcccc----ccccCCCccccC-CC----cccccccccCCCCCChhHHHHHHHHHHHHhhhcC
Q psy13692 240 YARLRGIRVIPEIDTPGHTDS----MEPGMPQIHCHC-PH----RVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFP 308 (592)
Q Consensus 240 YA~~rGI~VIPEID~PGH~~a----~~~~~P~l~~~c-~~----~~~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~lFp 308 (592)
-|++|||+|+|=+. ||-++- +-+.+|+-.... .+ ...|..--..|||..|++-+|+.+++-|+..-.+
T Consensus 123 ~AHkr~l~v~aWf~-~~~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Yd 199 (418)
T COG1649 123 EAHKRGLEVHAWFN-PYRMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYD 199 (418)
T ss_pred HHHhcCCeeeechh-hcccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCCC
Confidence 99999999999886 333221 112244433221 11 1111000235999999999999999999998765
No 17
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=95.83 E-value=0.075 Score=49.31 Aligned_cols=116 Identities=16% Similarity=0.199 Sum_probs=79.5
Q ss_pred HHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEeccCCCCcccccc
Q psy13692 183 KKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVIPEIDTPGHTDSME 262 (592)
Q Consensus 183 k~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VIPEID~PGH~~a~~ 262 (592)
+++++.|...+.|.+.+..-+-.+|.| ||-=. |. ....++.+=++++|+-|+++||+|+-=+|.--+.. +.
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~g~ay----YPt~~--~~--~hp~L~~Dllge~v~a~h~~Girv~ay~~~~~d~~-~~ 73 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHGGYAY----YPTKV--GP--RHPGLKRDLLGEQVEACHERGIRVPAYFDFSWDED-AA 73 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccccEEEE----ccCCC--Cc--CCCCCCcCHHHHHHHHHHHCCCEEEEEEeeecChH-HH
Confidence 678999999999999998777677654 33211 21 12345656679999999999999999998774443 44
Q ss_pred ccCCCccccCCC-cc-----cccccccCCCCCChhHHHHHHHHHHHHhhhcC
Q psy13692 263 PGMPQIHCHCPH-RV-----EGKTFVGPLDPTKNVTLDFVRDLFTELGQRFP 308 (592)
Q Consensus 263 ~~~P~l~~~c~~-~~-----~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~lFp 308 (592)
..|||......+ .+ ...+.+..+|+. ..-.+++...++|+++.++
T Consensus 74 ~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~n-s~Y~e~~~~~i~Ei~~~y~ 124 (132)
T PF14871_consen 74 ERHPEWFVRDADGRPMRGERFGYPGWYTCCLN-SPYREFLLEQIREILDRYD 124 (132)
T ss_pred HhCCceeeECCCCCCcCCCCcCCCCceecCCC-ccHHHHHHHHHHHHHHcCC
Confidence 569998754322 11 111113345554 4566999999999999886
No 18
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=95.13 E-value=0.42 Score=50.57 Aligned_cols=197 Identities=15% Similarity=0.234 Sum_probs=101.0
Q ss_pred ccceecCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCCCCCcHH---HHHHHHHHHH
Q psy13692 166 RGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEK---MIKNVIEYAR 242 (592)
Q Consensus 166 RGlmLD~sR~f~~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~e---di~eIv~YA~ 242 (592)
||+.=---....+.+.-+.+|+.|+.+|||++..=-.||. + .. ..|+ ..|+.+ ++++|++.|+
T Consensus 1 RGvIEGFYG~PWs~e~R~~l~~f~~~~kmN~YiYAPKdDp---y-------hr--~~Wr--e~Yp~~el~~l~~L~~~a~ 66 (306)
T PF07555_consen 1 RGVIEGFYGRPWSHEDRLDLIRFLGRYKMNTYIYAPKDDP---Y-------HR--SKWR--EPYPEEELAELKELADAAK 66 (306)
T ss_dssp EEEEE-SSSS---HHHHHHHHHHHHHTT--EEEE--TT-T---T-------TT--TTTT--S---HHHHHHHHHHHHHHH
T ss_pred CCceeCcCCCCCCHHHHHHHHHHHHHcCCceEEECCCCCh---H-------HH--hhhc--ccCCHHHHHHHHHHHHHHH
Confidence 4554333344567899999999999999999987766662 2 21 1232 446554 5788999999
Q ss_pred HcCCeEEeccCCCCccccccccCCCccccCCCcccccccccCCCCCChhHHHHHHHHHHHHhhhcCCCeEEecCCccccc
Q psy13692 243 LRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFF 322 (592)
Q Consensus 243 ~rGI~VIPEID~PGH~~a~~~~~P~l~~~c~~~~~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~lFp~~~~HiGGDEv~~~ 322 (592)
+.||++|--| .||... | -+.++.++.|..-|+++.++ .-..|-|=.|.+...
T Consensus 67 ~~~V~Fv~ai-sPg~~~------------~--------------~s~~~d~~~L~~K~~ql~~l-Gvr~FailfDDi~~~ 118 (306)
T PF07555_consen 67 ANGVDFVYAI-SPGLDI------------C--------------YSSEEDFEALKAKFDQLYDL-GVRSFAILFDDIDGD 118 (306)
T ss_dssp HTT-EEEEEE-BGTTT----------------------------TSHHHHHHHHHHHHHHHHCT-T--EEEEE-TS-SSC
T ss_pred HcCCEEEEEE-Cccccc------------c--------------cCcHHHHHHHHHHHHHHHhc-CCCEEEEeecCCCCc
Confidence 9999999777 244321 1 12457788888888888876 335555556666643
Q ss_pred cccCCHHHHHHHHhCCC-ChhhHHHHHHHHHHHHHHhhc--ccee------Eecccccc--ccccCCccccCCCCCCeEE
Q psy13692 323 CWEQNPEIKAFMSTRQW-DGPQLQSYYMQYLLKAIKTIR--KRSV------VWEEVFQD--WKNVNGDAQAMSMDKDTIV 391 (592)
Q Consensus 323 ~w~~~p~~~~~m~~~g~-~~~~L~~~f~~~v~~~l~~~G--k~~i------~W~D~l~~--~~~~~g~~~~~~Lpkd~iv 391 (592)
-|..+ +... ...+.|..++++|.+.+.+.. ..++ .+++.... ...+ +..||+++.|
T Consensus 119 ~~~~~--------~~~~~~~~~~q~~l~n~v~~~l~~~~~~~~~l~~cPt~Y~~~~~~~~Yl~~l-----~~~L~~~i~i 185 (306)
T PF07555_consen 119 LWHCD--------KDDFNSLAQAQARLLNRVNKELIKKKGDVKPLIFCPTEYCGDWASPEYLRTL-----GEQLDPDIQI 185 (306)
T ss_dssp --TTT--------TTT-SCHHHHHHHHHHHHHHHTTTCSSSS--EEEE-SS-SCHHHCCHHHHHH-----HHHS-TTSEE
T ss_pred ccccc--------ccccchHHHHHHHHHHHHHHHHhccCCCCCCceEEChhhcCCCCChHHHHHH-----HhhCCCCCEE
Confidence 22111 1111 456788899999987776542 2222 23322211 0111 2368898877
Q ss_pred EecCCCCC--CC-hHHHHHHHH-HcCCeEEe
Q psy13692 392 QVWRGGGL--EG-ASAAVKRVV-SAGYKVIN 418 (592)
Q Consensus 392 ~~W~~~~~--~~-~~~~~~~~~-~~Gy~vI~ 418 (592)
+ |.+... .. ..+.+..+. .-|.+.++
T Consensus 186 ~-WTG~~V~s~~is~~~~~~~~~~~~r~~~i 215 (306)
T PF07555_consen 186 F-WTGPKVCSSEISQEDLETFSEVFGRKPFI 215 (306)
T ss_dssp E-E-CSSSS-S-B-HHHHHHHHHHHTS-EEE
T ss_pred E-EcCCceecccCCHHHHHHHHHhhCCCcEE
Confidence 5 988531 11 123333332 33766655
No 19
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=93.29 E-value=0.23 Score=51.61 Aligned_cols=66 Identities=12% Similarity=0.164 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEe
Q psy13692 174 RHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVIP 250 (592)
Q Consensus 174 R~f~~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VIP 250 (592)
++-...+..|++||..|.+++-.+.+ |.+|.- ++- ...++....+...+|++||+||+++||.|+-
T Consensus 26 ~~g~~t~~~k~yIDfAa~~G~eYvlv----D~GW~~-----~~~--~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~l 91 (273)
T PF10566_consen 26 KHGATTETQKRYIDFAAEMGIEYVLV----DAGWYG-----WEK--DDDFDFTKPIPDFDLPELVDYAKEKGVGIWL 91 (273)
T ss_dssp -BSSSHHHHHHHHHHHHHTT-SEEEE----BTTCCG-----S----TTT--TT-B-TT--HHHHHHHHHHTT-EEEE
T ss_pred cCCCCHHHHHHHHHHHHHcCCCEEEe----cccccc-----ccc--cccccccccCCccCHHHHHHHHHHcCCCEEE
Confidence 45568999999999999999998877 778853 100 1112223557789999999999999998874
No 20
>smart00642 Aamy Alpha-amylase domain.
Probab=93.04 E-value=0.4 Score=46.14 Aligned_cols=75 Identities=19% Similarity=0.314 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHhhCCCcEEEEEeecCC------ccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEec
Q psy13692 178 PIKAIKKQLDIMSYNKLNVLHWHLVDDQ------SFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVIPE 251 (592)
Q Consensus 178 ~v~~ik~~Id~Ma~~KlN~lHwHltDdq------sfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VIPE 251 (592)
..+.|.+-++.++..++|.+++-..-.. .+.|....|-.+.. .+=|.+|++++|+-|+++||+||..
T Consensus 17 ~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~-------~~Gt~~d~~~lv~~~h~~Gi~vilD 89 (166)
T smart00642 17 DLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDP-------RFGTMEDFKELVDAAHARGIKVILD 89 (166)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCc-------ccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 4677888888999999999987432110 11122211111110 1127899999999999999999999
Q ss_pred cCCCCcccc
Q psy13692 252 IDTPGHTDS 260 (592)
Q Consensus 252 ID~PGH~~a 260 (592)
+ +|-|++.
T Consensus 90 ~-V~NH~~~ 97 (166)
T smart00642 90 V-VINHTSD 97 (166)
T ss_pred E-CCCCCCC
Confidence 9 6899875
No 21
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=92.31 E-value=0.18 Score=54.54 Aligned_cols=126 Identities=19% Similarity=0.281 Sum_probs=78.2
Q ss_pred CCHHHHHHHHHHHhhCCCcEEEEEeecCCccc-cccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEeccCCC
Q psy13692 177 LPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFP-YESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVIPEIDTP 255 (592)
Q Consensus 177 ~~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp-~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VIPEID~P 255 (592)
.|.+.+++-|+.|...++|++.++.. +|. +| |+ . +.|.-+.+.++++.|+++||.||.-+-+.
T Consensus 7 ~~~e~~~~d~~~m~~~G~n~vri~~~---~W~~lE----P~---e------G~ydF~~lD~~l~~a~~~Gi~viL~~~~~ 70 (374)
T PF02449_consen 7 WPEEEWEEDLRLMKEAGFNTVRIGEF---SWSWLE----PE---E------GQYDFSWLDRVLDLAAKHGIKVILGTPTA 70 (374)
T ss_dssp S-CCHHHHHHHHHHHHT-SEEEE-CC---EHHHH-----SB---T------TB---HHHHHHHHHHHCTT-EEEEEECTT
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEEe---chhhcc----CC---C------CeeecHHHHHHHHHHHhccCeEEEEeccc
Confidence 35688999999999999999998642 232 22 21 2 44677889999999999999999766433
Q ss_pred CccccccccCCCccccCCC---cccccccccCCCCCChhHHHHHHHHHHHHhhhcCC-C---eEEecCCcccc
Q psy13692 256 GHTDSMEPGMPQIHCHCPH---RVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPE-S---YVHLGGDEVDF 321 (592)
Q Consensus 256 GH~~a~~~~~P~l~~~c~~---~~~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~lFp~-~---~~HiGGDEv~~ 321 (592)
..-..+.+.+|+.+....+ ...|. ....|+.+|...+.+.++++.+.+.+.+ + -+||+ -|...
T Consensus 71 ~~P~Wl~~~~Pe~~~~~~~g~~~~~g~--~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~-NE~~~ 140 (374)
T PF02449_consen 71 APPAWLYDKYPEILPVDADGRRRGFGS--RQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQID-NEPGY 140 (374)
T ss_dssp TS-HHHHCCSGCCC-B-TTTSBEECCC--STT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEC-CSTTC
T ss_pred ccccchhhhcccccccCCCCCcCccCC--ccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEec-cccCc
Confidence 3223334568987643222 11122 2346788899999999999999888764 2 45663 35443
No 22
>PRK12313 glycogen branching enzyme; Provisional
Probab=92.28 E-value=1.3 Score=51.48 Aligned_cols=121 Identities=14% Similarity=0.129 Sum_probs=74.5
Q ss_pred CCCHHHH-HHHHHHHhhCCCcEEEEEeecC----CccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEe
Q psy13692 176 YLPIKAI-KKQLDIMSYNKLNVLHWHLVDD----QSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVIP 250 (592)
Q Consensus 176 f~~v~~i-k~~Id~Ma~~KlN~lHwHltDd----qsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VIP 250 (592)
+-+...| .++||.+..+++|.+.+=-.-+ .+|.|....|=.+. . .+=|.+|+|++|+-|.+|||+||-
T Consensus 166 ~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~--~-----~~Gt~~d~k~lv~~~H~~Gi~Vil 238 (633)
T PRK12313 166 PLSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPT--S-----RYGTPEDFMYLVDALHQNGIGVIL 238 (633)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCC--C-----CCCCHHHHHHHHHHHHHCCCEEEE
Confidence 3455554 4667999999999988743211 13333332221111 1 223899999999999999999999
Q ss_pred ccCCCCccccccccCCCccc-cCCC---------cccccccccCCCCCChhHHHHHHHHHHHHhhhc
Q psy13692 251 EIDTPGHTDSMEPGMPQIHC-HCPH---------RVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRF 307 (592)
Q Consensus 251 EID~PGH~~a~~~~~P~l~~-~c~~---------~~~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~lF 307 (592)
.+ +|.|++.-..+.+.+.. ..+. ..|+. ..+|-.++++.+++.+.+.-+++-|
T Consensus 239 D~-V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~---~~~n~~~~~vr~~l~~~~~~W~~~~ 301 (633)
T PRK12313 239 DW-VPGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGA---LNFDLGKNEVRSFLISSALFWLDEY 301 (633)
T ss_pred EE-CCCCCCCCcccccccCCCcceeecCCCCCcCCCCCC---cccCCCCHHHHHHHHHHHHHHHHHh
Confidence 99 58998631110011100 0000 11221 2478889999999999888887754
No 23
>PRK14705 glycogen branching enzyme; Provisional
Probab=92.02 E-value=2.5 Score=52.52 Aligned_cols=169 Identities=14% Similarity=0.147 Sum_probs=97.4
Q ss_pred HHHHHHHHhhCCCcEEEEEeecC----CccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEeccCCCCc
Q psy13692 182 IKKQLDIMSYNKLNVLHWHLVDD----QSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVIPEIDTPGH 257 (592)
Q Consensus 182 ik~~Id~Ma~~KlN~lHwHltDd----qsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VIPEID~PGH 257 (592)
+.++||-+..+++|.+++--.-+ .+|-|+...|=..+ . .+=|.+|+|++|+.|.++||.||-.+ +|+|
T Consensus 768 ~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~--~-----ryGt~~dfk~lVd~~H~~GI~VILD~-V~nH 839 (1224)
T PRK14705 768 AKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPT--S-----RFGHPDEFRFLVDSLHQAGIGVLLDW-VPAH 839 (1224)
T ss_pred HHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcC--c-----ccCCHHHHHHHHHHHHHCCCEEEEEe-cccc
Confidence 45678999999999887754321 23444333221111 1 12289999999999999999999998 7999
Q ss_pred ccc--ccccCCCcc-ccCCC---------cccccccccCCCCCChhHHHHHHHHHHHHhhhcC-CC----------eEEe
Q psy13692 258 TDS--MEPGMPQIH-CHCPH---------RVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFP-ES----------YVHL 314 (592)
Q Consensus 258 ~~a--~~~~~P~l~-~~c~~---------~~~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~lFp-~~----------~~Hi 314 (592)
+.. |... .+. ..++. ..||. ..+|-.++++.+|+.+...-+++-|. |- |.+-
T Consensus 840 ~~~d~~~l~--~fdg~~~y~~~d~~~g~~~~Wg~---~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav~~mly~Dy 914 (1224)
T PRK14705 840 FPKDSWALA--QFDGQPLYEHADPALGEHPDWGT---LIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAVASMLYLDY 914 (1224)
T ss_pred CCcchhhhh--hcCCCcccccCCcccCCCCCCCC---ceecCCCHHHHHHHHHHHHHHHHHhCCCcEEEeehhhhhhccc
Confidence 852 2110 010 00111 12332 24788899999999998888877653 11 1111
Q ss_pred cCCccccccccCCHHHHHHHHhCCC--ChhhHHHHHHHHHHHHHHhhccceeEecccccccccc
Q psy13692 315 GGDEVDFFCWEQNPEIKAFMSTRQW--DGPQLQSYYMQYLLKAIKTIRKRSVVWEEVFQDWKNV 376 (592)
Q Consensus 315 GGDEv~~~~w~~~p~~~~~m~~~g~--~~~~L~~~f~~~v~~~l~~~Gk~~i~W~D~l~~~~~~ 376 (592)
+.++ +.|..+ +.|- +... ..|++++.+.+++.....++=.|....++.+
T Consensus 915 sr~~---g~w~pn--------~~gg~en~~a--i~fl~~ln~~v~~~~p~~~~IAEest~~p~v 965 (1224)
T PRK14705 915 SREE---GQWRPN--------RFGGRENLEA--ISFLQEVNATVYKTHPGAVMIAEESTAFPGV 965 (1224)
T ss_pred cccc---cccccc--------ccCCccChHH--HHHHHHHHHHHHHHCCCeEEEEEcCCCCcCc
Confidence 2111 223211 1111 1111 4688888888888766556555555544433
No 24
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=91.84 E-value=1.4 Score=51.14 Aligned_cols=117 Identities=15% Similarity=0.200 Sum_probs=72.4
Q ss_pred HHHH-HHHHHHHhhCCCcEEEEEeecC----CccccccccCCccccCCCCCCC-CCCcHHHHHHHHHHHHHcCCeEEecc
Q psy13692 179 IKAI-KKQLDIMSYNKLNVLHWHLVDD----QSFPYESKKFPSLSLKGAFGPD-AIYTEKMIKNVIEYARLRGIRVIPEI 252 (592)
Q Consensus 179 v~~i-k~~Id~Ma~~KlN~lHwHltDd----qsfp~e~~~~P~Lt~~Gay~p~-~~YT~edi~eIv~YA~~rGI~VIPEI 252 (592)
...| .++||-+..+++|.+++=-.-+ -+|.|....| |.+. .+=|.+|+|++|+-|.++||+||-.+
T Consensus 155 ~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y--------~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~ 226 (613)
T TIGR01515 155 YRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGY--------YAPTSRFGTPDDFMYFVDACHQAGIGVILDW 226 (613)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccC--------cccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3443 4557999999999888732111 1233333222 1122 12278999999999999999999999
Q ss_pred CCCCcccccc---ccC---CCccccCCC----cccccccccCCCCCChhHHHHHHHHHHHHhhhc
Q psy13692 253 DTPGHTDSME---PGM---PQIHCHCPH----RVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRF 307 (592)
Q Consensus 253 D~PGH~~a~~---~~~---P~l~~~c~~----~~~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~lF 307 (592)
++.|++.-. ... |.....+.. ..+|. ..+|..++++.+++.+.++-+++-|
T Consensus 227 -V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~---~~~~~~~~~Vr~~l~~~~~~W~~ey 287 (613)
T TIGR01515 227 -VPGHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGT---LIFDYGRPEVRNFLVANALYWAEFY 287 (613)
T ss_pred -cccCcCCccchhhccCCCcceeccCCccCcCCCCCC---ceecCCCHHHHHHHHHHHHHHHHHh
Confidence 689986311 111 111001100 11221 1478899999999999998888765
No 25
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=91.04 E-value=2.2 Score=48.67 Aligned_cols=115 Identities=13% Similarity=0.104 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEeecC----CccccccccCCccccCCCCCCC-CCCcHHHHHHHHHHHHHcCCeEEeccC
Q psy13692 179 IKAIKKQLDIMSYNKLNVLHWHLVDD----QSFPYESKKFPSLSLKGAFGPD-AIYTEKMIKNVIEYARLRGIRVIPEID 253 (592)
Q Consensus 179 v~~ik~~Id~Ma~~KlN~lHwHltDd----qsfp~e~~~~P~Lt~~Gay~p~-~~YT~edi~eIv~YA~~rGI~VIPEID 253 (592)
..-|.+-||.+..+++|.+++--.-+ ..|.|....|= .+. .+=|.+|++++|+-|.++||+||-.+
T Consensus 110 ~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~--------~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~- 180 (542)
T TIGR02402 110 FDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPY--------APHNAYGGPDDLKALVDAAHGLGLGVILDV- 180 (542)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcc--------ccccccCCHHHHHHHHHHHHHCCCEEEEEE-
Confidence 55666678999999999888854321 12333222111 111 22288999999999999999999998
Q ss_pred CCCccccccccCCC---ccccCCCcccccccccCCCCCCh---hHHHHHHHHHHHHhhh
Q psy13692 254 TPGHTDSMEPGMPQ---IHCHCPHRVEGKTFVGPLDPTKN---VTLDFVRDLFTELGQR 306 (592)
Q Consensus 254 ~PGH~~a~~~~~P~---l~~~c~~~~~g~~~~~~lnp~~~---~ty~fl~~ll~Ev~~l 306 (592)
++.|++.-....+. +-..-....||. .+|-.++ ++.+++.+.+.-+++-
T Consensus 181 V~NH~~~~~~~~~~~~~y~~~~~~~~wg~----~~n~~~~~~~~vr~~i~~~~~~W~~e 235 (542)
T TIGR02402 181 VYNHFGPEGNYLPRYAPYFTDRYSTPWGA----AINFDGPGSDEVRRYILDNALYWLRE 235 (542)
T ss_pred ccCCCCCccccccccCccccCCCCCCCCC----ccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 58998632111111 110000122332 4666666 8888887777666653
No 26
>PLN02960 alpha-amylase
Probab=90.37 E-value=2.3 Score=50.74 Aligned_cols=120 Identities=18% Similarity=0.190 Sum_probs=75.9
Q ss_pred CCCHHHH-HHHHHHHhhCCCcEEEEEeec----CCccccccccCCccccCCCCCCC-CCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 176 YLPIKAI-KKQLDIMSYNKLNVLHWHLVD----DQSFPYESKKFPSLSLKGAFGPD-AIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 176 f~~v~~i-k~~Id~Ma~~KlN~lHwHltD----dqsfp~e~~~~P~Lt~~Gay~p~-~~YT~edi~eIv~YA~~rGI~VI 249 (592)
+-+...| .+.|+-+..+++|.+.+--.- ..+|-|....| |.+. .+=|.+|++++|+-|.++||.||
T Consensus 412 ~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~y--------fa~~~~yGtp~dfk~LVd~aH~~GI~VI 483 (897)
T PLN02960 412 ISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNF--------FAVSSRFGTPDDFKRLVDEAHGLGLLVF 483 (897)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccC--------CCcccccCCHHHHHHHHHHHHHCCCEEE
Confidence 3455555 477999999999988885442 22333333222 1222 22289999999999999999999
Q ss_pred eccCCCCcccccc-ccCCCccc--cCCC--------cccccccccCCCCCChhHHHHHHHHHHHHhhhc
Q psy13692 250 PEIDTPGHTDSME-PGMPQIHC--HCPH--------RVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRF 307 (592)
Q Consensus 250 PEID~PGH~~a~~-~~~P~l~~--~c~~--------~~~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~lF 307 (592)
..+ +|.|++.-. .....+.. .|+- ..||. ..+|-.++++.+||-+.+.-+++-|
T Consensus 484 LDv-V~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~---~~fNy~~~eVr~fLlsna~yWl~Ey 548 (897)
T PLN02960 484 LDI-VHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGT---RMFKYGDHEVLHFLLSNLNWWVTEY 548 (897)
T ss_pred EEe-cccccCCccccchhhcCCCccceeecCCCCccCCCCC---cccCCCCHHHHHHHHHHHHHHHHHH
Confidence 999 699986420 00000100 0111 12332 3478889999999999888777654
No 27
>PRK14706 glycogen branching enzyme; Provisional
Probab=90.18 E-value=2.3 Score=49.46 Aligned_cols=120 Identities=19% Similarity=0.230 Sum_probs=73.1
Q ss_pred CCCHH-HHHHHHHHHhhCCCcEEEEEeecC----CccccccccCCccccCCCCCCCCCC-cHHHHHHHHHHHHHcCCeEE
Q psy13692 176 YLPIK-AIKKQLDIMSYNKLNVLHWHLVDD----QSFPYESKKFPSLSLKGAFGPDAIY-TEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 176 f~~v~-~ik~~Id~Ma~~KlN~lHwHltDd----qsfp~e~~~~P~Lt~~Gay~p~~~Y-T~edi~eIv~YA~~rGI~VI 249 (592)
|.... .+.++|+-+..+.+|.+++=-.-+ .+|-|....| |.+...| |.+|+|++|+-|.++||+||
T Consensus 163 ~~ty~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~--------~~~~~~~g~~~~~~~lv~~~H~~gi~Vi 234 (639)
T PRK14706 163 FLNYRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGY--------YAPTSRLGTPEDFKYLVNHLHGLGIGVI 234 (639)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccc--------cccccccCCHHHHHHHHHHHHHCCCEEE
Confidence 45543 345667888889999877643321 1232222211 2222223 89999999999999999999
Q ss_pred eccCCCCccccccccCCCcc-ccCC---------CcccccccccCCCCCChhHHHHHHHHHHHHhhhc
Q psy13692 250 PEIDTPGHTDSMEPGMPQIH-CHCP---------HRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRF 307 (592)
Q Consensus 250 PEID~PGH~~a~~~~~P~l~-~~c~---------~~~~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~lF 307 (592)
..+ ++.|++.-..+...+- ..++ ...|+. ..+|-.++++.+||.+...-+++-|
T Consensus 235 lD~-v~nH~~~~~~~l~~~dg~~~y~~~~~~~g~~~~w~~---~~~~~~~~eVr~~l~~~~~~W~~e~ 298 (639)
T PRK14706 235 LDW-VPGHFPTDESGLAHFDGGPLYEYADPRKGYHYDWNT---YIFDYGRNEVVMFLIGSALKWLQDF 298 (639)
T ss_pred EEe-cccccCcchhhhhccCCCcceeccCCcCCcCCCCCC---cccCCCCHHHHHHHHHHHHHHHHHh
Confidence 999 6899863111100000 0011 012222 1378889999999999888887655
No 28
>PRK12568 glycogen branching enzyme; Provisional
Probab=89.33 E-value=3.6 Score=48.54 Aligned_cols=123 Identities=12% Similarity=0.143 Sum_probs=75.3
Q ss_pred CCCHHHH-HHHHHHHhhCCCcEEEEEeecC----CccccccccCCccccCCCCCCC-CCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 176 YLPIKAI-KKQLDIMSYNKLNVLHWHLVDD----QSFPYESKKFPSLSLKGAFGPD-AIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 176 f~~v~~i-k~~Id~Ma~~KlN~lHwHltDd----qsfp~e~~~~P~Lt~~Gay~p~-~~YT~edi~eIv~YA~~rGI~VI 249 (592)
+.....| .++|+-+..+++|.+++--.-. .+|-|... |-|.+. .+=|.+|++++|+.|.++||+||
T Consensus 265 ~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~--------~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VI 336 (730)
T PRK12568 265 PLDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPL--------GLYAPTARHGSPDGFAQFVDACHRAGIGVI 336 (730)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCC--------cCCccCcccCCHHHHHHHHHHHHHCCCEEE
Confidence 4454444 4678999999999888754321 12333221 222222 22389999999999999999999
Q ss_pred eccCCCCccccccccCCCcc-ccCCC--cc-ccc-cccc--CCCCCChhHHHHHHHHHHHHhhhc
Q psy13692 250 PEIDTPGHTDSMEPGMPQIH-CHCPH--RV-EGK-TFVG--PLDPTKNVTLDFVRDLFTELGQRF 307 (592)
Q Consensus 250 PEID~PGH~~a~~~~~P~l~-~~c~~--~~-~g~-~~~~--~lnp~~~~ty~fl~~ll~Ev~~lF 307 (592)
..+ +|.|+.....+...+- ...+. .+ .|. ..++ .+|-.++++.+|+-+.+.-.++-|
T Consensus 337 lD~-V~nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~ey 400 (730)
T PRK12568 337 LDW-VSAHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHY 400 (730)
T ss_pred EEe-ccccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHh
Confidence 999 5999874321111110 00111 00 010 1122 368899999999999888887655
No 29
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=89.00 E-value=1.4 Score=50.17 Aligned_cols=71 Identities=15% Similarity=0.276 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCCC-------CCcHHHHHHHHHHHHHcCCeEEe
Q psy13692 178 PIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDA-------IYTEKMIKNVIEYARLRGIRVIP 250 (592)
Q Consensus 178 ~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~~-------~YT~edi~eIv~YA~~rGI~VIP 250 (592)
.+.-|.+-||.++..++|.+++=.. ++++ .....|.+.. +=|.+|++++|+-|+++||+||.
T Consensus 25 ~~~gi~~~l~yl~~lG~~~i~l~Pi------~~~~-----~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vil 93 (543)
T TIGR02403 25 DLRGIIEKLDYLKKLGVDYIWLNPF------YVSP-----QKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIML 93 (543)
T ss_pred CHHHHHHhHHHHHHcCCCEEEECCc------ccCC-----CCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 5677888889999999998887321 1111 1111233222 22889999999999999999999
Q ss_pred ccCCCCcccc
Q psy13692 251 EIDTPGHTDS 260 (592)
Q Consensus 251 EID~PGH~~a 260 (592)
.+ +|-|++.
T Consensus 94 D~-v~NH~~~ 102 (543)
T TIGR02403 94 DM-VFNHTST 102 (543)
T ss_pred EE-Ccccccc
Confidence 99 6899863
No 30
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=88.10 E-value=3.5 Score=41.67 Aligned_cols=156 Identities=13% Similarity=0.188 Sum_probs=88.3
Q ss_pred CcccceecCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHH
Q psy13692 164 PHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARL 243 (592)
Q Consensus 164 ~~RGlmLD~sR~f~~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~ 243 (592)
.+||+-.. +..-..+.+.++.|+..++|.+-+++. |..-.+.-|.. .+ .--.-+.++++|++|++
T Consensus 9 ~~~G~n~~----w~~~~~~~~~~~~~~~~G~n~VRi~v~----~~~~~~~~~~~----~~---~~~~~~~ld~~v~~a~~ 73 (281)
T PF00150_consen 9 NWRGFNTH----WYNPSITEADFDQLKALGFNTVRIPVG----WEAYQEPNPGY----NY---DETYLARLDRIVDAAQA 73 (281)
T ss_dssp EEEEEEET----TSGGGSHHHHHHHHHHTTESEEEEEEE----STSTSTTSTTT----SB---THHHHHHHHHHHHHHHH
T ss_pred Eeeeeecc----cCCCCCHHHHHHHHHHCCCCEEEeCCC----HHHhcCCCCCc----cc---cHHHHHHHHHHHHHHHh
Confidence 45666554 433337889999999999999999885 21101111111 01 11245779999999999
Q ss_pred cCCeEEeccCCCCccccccccCCCccccCCCcccccccccCCCCCChhHHHHHHHHHHHHhhhcCC--CeEEec-CCccc
Q psy13692 244 RGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPE--SYVHLG-GDEVD 320 (592)
Q Consensus 244 rGI~VIPEID~PGH~~a~~~~~P~l~~~c~~~~~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~lFp~--~~~HiG-GDEv~ 320 (592)
+||.||..+-.. ..|.. .+......+...+.++++++.++..|.+ ..+=+. .-|..
T Consensus 74 ~gi~vild~h~~---~~w~~------------------~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~ 132 (281)
T PF00150_consen 74 YGIYVILDLHNA---PGWAN------------------GGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPN 132 (281)
T ss_dssp TT-EEEEEEEES---TTCSS------------------STSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGC
T ss_pred CCCeEEEEeccC---ccccc------------------cccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCcc
Confidence 999999866432 11200 0112223345667788888888888842 222221 23333
Q ss_pred ccc----ccCCHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhccc-eeEecc
Q psy13692 321 FFC----WEQNPEIKAFMSTRQWDGPQLQSYYMQYLLKAIKTIRKR-SVVWEE 368 (592)
Q Consensus 321 ~~~----w~~~p~~~~~m~~~g~~~~~L~~~f~~~v~~~l~~~Gk~-~i~W~D 368 (592)
... | .. ...+.+..|.+++.+.+++.+.. +|+-+.
T Consensus 133 ~~~~~~~w-~~------------~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~ 172 (281)
T PF00150_consen 133 GGNDDANW-NA------------QNPADWQDWYQRAIDAIRAADPNHLIIVGG 172 (281)
T ss_dssp STTSTTTT-SH------------HHTHHHHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred ccCCcccc-cc------------ccchhhhhHHHHHHHHHHhcCCcceeecCC
Confidence 321 2 00 01233466788899999998764 344333
No 31
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=87.54 E-value=3.7 Score=48.27 Aligned_cols=116 Identities=17% Similarity=0.152 Sum_probs=68.3
Q ss_pred HHHHHhhCCCcEEEEEeecCCccccccccCCccccCC-----CCC------CCCCC----cHHHHHHHHHHHHHcCCeEE
Q psy13692 185 QLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKG-----AFG------PDAIY----TEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 185 ~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~G-----ay~------p~~~Y----T~edi~eIv~YA~~rGI~VI 249 (592)
.||-+..+++|.+++=-.= +...-+.+..+| .|. +...| +.+|+|++|+-|.++||+||
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~------~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VI 262 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVH------AFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVI 262 (688)
T ss_pred hhHHHHHcCCCEEEECCcc------cCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEE
Confidence 5888888999988763211 111111111111 133 33445 68999999999999999999
Q ss_pred eccCCCCccccccccCCCcc-----ccCCC--ccc--cc----ccc-cCCCCCChhHHHHHHHHHHHHhhhc
Q psy13692 250 PEIDTPGHTDSMEPGMPQIH-----CHCPH--RVE--GK----TFV-GPLDPTKNVTLDFVRDLFTELGQRF 307 (592)
Q Consensus 250 PEID~PGH~~a~~~~~P~l~-----~~c~~--~~~--g~----~~~-~~lnp~~~~ty~fl~~ll~Ev~~lF 307 (592)
-.+ ++.|++.-....|... ...+- .+. +. ..+ ..+|..++.+.+++.+.+.-++.-|
T Consensus 263 lDv-V~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~i~d~l~~W~~e~ 333 (688)
T TIGR02100 263 LDV-VYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVMDSLRYWVTEM 333 (688)
T ss_pred EEE-CcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHHHHHHHHHHHHHc
Confidence 999 6889874221111110 00000 000 00 012 2588889999999998888877644
No 32
>PRK05402 glycogen branching enzyme; Provisional
Probab=87.39 E-value=5.3 Score=47.26 Aligned_cols=121 Identities=13% Similarity=0.165 Sum_probs=74.1
Q ss_pred CCCHHHHH-HHHHHHhhCCCcEEEEEeec----CCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEe
Q psy13692 176 YLPIKAIK-KQLDIMSYNKLNVLHWHLVD----DQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVIP 250 (592)
Q Consensus 176 f~~v~~ik-~~Id~Ma~~KlN~lHwHltD----dqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VIP 250 (592)
+.+...|. ++||-+..+.+|.+++=-.- +.+|.|....|=.+. . .+=|.+|+|++|+-|.++||+||-
T Consensus 261 ~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~--~-----~~Gt~~dfk~lV~~~H~~Gi~Vil 333 (726)
T PRK05402 261 FLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPT--S-----RFGTPDDFRYFVDACHQAGIGVIL 333 (726)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcC--c-----ccCCHHHHHHHHHHHHHCCCEEEE
Confidence 34555554 55799999999988875431 112333333221111 1 233899999999999999999999
Q ss_pred ccCCCCccccccccCCCcc-ccCCC---------cccccccccCCCCCChhHHHHHHHHHHHHhhhc
Q psy13692 251 EIDTPGHTDSMEPGMPQIH-CHCPH---------RVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRF 307 (592)
Q Consensus 251 EID~PGH~~a~~~~~P~l~-~~c~~---------~~~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~lF 307 (592)
.+ +|.|++.-..+...+. ...+. ..|+. ..+|-.++++.+++.+.+.-+++-|
T Consensus 334 D~-V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~---~~~n~~~~~v~~~l~~~~~~W~~e~ 396 (726)
T PRK05402 334 DW-VPAHFPKDAHGLARFDGTALYEHADPREGEHPDWGT---LIFNYGRNEVRNFLVANALYWLEEF 396 (726)
T ss_pred EE-CCCCCCCCccchhccCCCcceeccCCcCCccCCCCC---ccccCCCHHHHHHHHHHHHHHHHHh
Confidence 98 5899853110000000 00110 11221 1468889999999999888887654
No 33
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=86.55 E-value=6.2 Score=46.77 Aligned_cols=179 Identities=14% Similarity=0.118 Sum_probs=100.7
Q ss_pred CCHHH-HHHHHHHHhhCCCcEEEEEeecC----CccccccccCCccccCCCCCCCCCC-cHHHHHHHHHHHHHcCCeEEe
Q psy13692 177 LPIKA-IKKQLDIMSYNKLNVLHWHLVDD----QSFPYESKKFPSLSLKGAFGPDAIY-TEKMIKNVIEYARLRGIRVIP 250 (592)
Q Consensus 177 ~~v~~-ik~~Id~Ma~~KlN~lHwHltDd----qsfp~e~~~~P~Lt~~Gay~p~~~Y-T~edi~eIv~YA~~rGI~VIP 250 (592)
-+... ..+.|+.+..+++|.+++--.-+ .+|-|....|= .+...| |.+|+|++|+-|.++||+||-
T Consensus 247 gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~f--------a~~~~~Gtp~dlk~LVd~aH~~GI~Vil 318 (758)
T PLN02447 247 NSYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFF--------AVSSRSGTPEDLKYLIDKAHSLGLRVLM 318 (758)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCc--------ccccccCCHHHHHHHHHHHHHCCCEEEE
Confidence 34444 46789999999999888754322 12333332221 122222 789999999999999999999
Q ss_pred ccCCCCcccccc-ccCCCccc--cCCC--ccccc-ccc--cCCCCCChhHHHHHHHHHHHHhhhcC------C-----Ce
Q psy13692 251 EIDTPGHTDSME-PGMPQIHC--HCPH--RVEGK-TFV--GPLDPTKNVTLDFVRDLFTELGQRFP------E-----SY 311 (592)
Q Consensus 251 EID~PGH~~a~~-~~~P~l~~--~c~~--~~~g~-~~~--~~lnp~~~~ty~fl~~ll~Ev~~lFp------~-----~~ 311 (592)
.+ ++.|+..-. .+...+-. .++- .+.|. ..+ ..+|-.++++.+||.+.++-+++-|. + -|
T Consensus 319 Dv-V~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV~smlY 397 (758)
T PLN02447 319 DV-VHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGVTSMLY 397 (758)
T ss_pred Ee-ccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhCcccccccchhhhhc
Confidence 99 699986311 00000100 0110 00110 012 24788899999999999888887542 1 24
Q ss_pred EEecCCccccccccCCHHHHHHHHhCCC--ChhhHHHHHHHHHHHHHHhhccceeEeccccccccc
Q psy13692 312 VHLGGDEVDFFCWEQNPEIKAFMSTRQW--DGPQLQSYYMQYLLKAIKTIRKRSVVWEEVFQDWKN 375 (592)
Q Consensus 312 ~HiGGDEv~~~~w~~~p~~~~~m~~~g~--~~~~L~~~f~~~v~~~l~~~Gk~~i~W~D~l~~~~~ 375 (592)
.|-|-..-+...+.. .-|. +... ..|++.+.+.+++.....+.=.|-...++.
T Consensus 398 ~~hg~~~~f~~~~~~---------~~g~~~d~~a--~~fL~~~N~~i~~~~p~~~~IAEd~s~~p~ 452 (758)
T PLN02447 398 HHHGLQMAFTGNYNE---------YFGMATDVDA--VVYLMLANDLLHGLYPEAVTIAEDVSGMPT 452 (758)
T ss_pred cccCcccccccCccc---------ccCCccChHH--HHHHHHHHHHHHHhCCCeEEEEEcCCCCCC
Confidence 554543321111110 0111 2222 357788888888876655555554444333
No 34
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=86.13 E-value=4.5 Score=44.37 Aligned_cols=130 Identities=16% Similarity=0.207 Sum_probs=77.6
Q ss_pred CCHHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCC-CCCcHHHHHHHHHHHHHcCCeE----Eec
Q psy13692 177 LPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPD-AIYTEKMIKNVIEYARLRGIRV----IPE 251 (592)
Q Consensus 177 ~~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~-~~YT~edi~eIv~YA~~rGI~V----IPE 251 (592)
+..+.|++++|.|+...+++|.+ | .||--. .-...+..|-|.+. ..+ ++-++.|+++.+++|++. -||
T Consensus 55 ~~e~~i~~~a~~~~~~G~e~fvi---D-DGW~~~--r~~d~~~~GdW~~~~~kF-P~Gl~~l~~~i~~~Gmk~GlW~ePe 127 (394)
T PF02065_consen 55 ITEEKILELADAAAELGYEYFVI---D-DGWFGG--RDDDNAGLGDWEPDPKKF-PNGLKPLADYIHSLGMKFGLWFEPE 127 (394)
T ss_dssp --HHHHHHHHHHHHHHT-SEEEE-----SSSBCT--ESTTTSTTSBECBBTTTS-TTHHHHHHHHHHHTT-EEEEEEETT
T ss_pred CCHHHHHHHHHHHHHhCCEEEEE---c-Cccccc--cCCCcccCCceeEChhhh-CCcHHHHHHHHHHCCCeEEEEeccc
Confidence 46899999999999999999886 3 466321 11122233444433 122 234999999999998774 555
Q ss_pred cCCCCccccccccCCCccccCCCc--ccccccccCCCCCChhHHHHHHHHHHHHhhhcCCCeEEecC
Q psy13692 252 IDTPGHTDSMEPGMPQIHCHCPHR--VEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGG 316 (592)
Q Consensus 252 ID~PGH~~a~~~~~P~l~~~c~~~--~~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~lFp~~~~HiGG 316 (592)
+=.|+ ..+.+.||+......+. ..+. ....||+++|++.+++.+.+..+..-..-.||=+-.
T Consensus 128 ~v~~~--S~l~~~hPdw~l~~~~~~~~~~r-~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~ 191 (394)
T PF02065_consen 128 MVSPD--SDLYREHPDWVLRDPGRPPTLGR-NQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDF 191 (394)
T ss_dssp EEESS--SCHCCSSBGGBTCCTTSE-ECBT-TBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-
T ss_pred cccch--hHHHHhCccceeecCCCCCcCcc-cceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEecc
Confidence 54333 23456688875432221 1111 123699999999999999998887655556655433
No 35
>PRK03705 glycogen debranching enzyme; Provisional
Probab=86.02 E-value=4.6 Score=47.26 Aligned_cols=117 Identities=16% Similarity=0.237 Sum_probs=69.3
Q ss_pred HHHHHhhCCCcEEEEEeecCCccccccccCCccccCC-----CCC------CCCCCc------HHHHHHHHHHHHHcCCe
Q psy13692 185 QLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKG-----AFG------PDAIYT------EKMIKNVIEYARLRGIR 247 (592)
Q Consensus 185 ~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~G-----ay~------p~~~YT------~edi~eIv~YA~~rGI~ 247 (592)
.||-+..+++|.+++=-.- +....+.+...| .|. +...|. .+|+|++|+-|.++||+
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~------~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~ 257 (658)
T PRK03705 184 MIAYLKQLGITALELLPVA------QFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIE 257 (658)
T ss_pred chHHHHHcCCCEEEecCcc------cCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCE
Confidence 4888888999988874321 111112221111 122 334443 37999999999999999
Q ss_pred EEeccCCCCccccccccCCCccc-----cCC-C-ccccc----ccc-cCCCCCChhHHHHHHHHHHHHhhhcC
Q psy13692 248 VIPEIDTPGHTDSMEPGMPQIHC-----HCP-H-RVEGK----TFV-GPLDPTKNVTLDFVRDLFTELGQRFP 308 (592)
Q Consensus 248 VIPEID~PGH~~a~~~~~P~l~~-----~c~-~-~~~g~----~~~-~~lnp~~~~ty~fl~~ll~Ev~~lFp 308 (592)
||-.+ ++.|+.......|.+.. .-+ . ...|. ..+ ..||..++.+.+++.+.++-+++-|.
T Consensus 258 VIlDv-V~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l~~W~~e~g 329 (658)
T PRK03705 258 VILDV-VFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCLRYWVETCH 329 (658)
T ss_pred EEEEE-cccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHHHHHHHHhC
Confidence 99999 68898642211221100 000 0 00010 001 25888899999999999988887654
No 36
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=85.70 E-value=0.87 Score=46.45 Aligned_cols=70 Identities=26% Similarity=0.439 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCC-------CCCcHHHHHHHHHHHHHcCCeEEec
Q psy13692 179 IKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPD-------AIYTEKMIKNVIEYARLRGIRVIPE 251 (592)
Q Consensus 179 v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~-------~~YT~edi~eIv~YA~~rGI~VIPE 251 (592)
.+-|++-||.++..++|.+++-- .++ .|. . .-.|.+. .+=|.+|+++||+-|.+|||+||-.
T Consensus 3 ~~gi~~kLdyl~~lGv~~I~l~P------i~~---~~~-~-~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD 71 (316)
T PF00128_consen 3 FRGIIDKLDYLKDLGVNAIWLSP------IFE---SPN-G-YHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILD 71 (316)
T ss_dssp HHHHHHTHHHHHHHTESEEEESS-------EE---SSS-S-TTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHhhHHHHHcCCCceeccc------ccc---ccc-c-cccccceeeeccccccchhhhhhhhhhccccccceEEEe
Confidence 35577788999999999888732 111 111 1 1112221 1228999999999999999999998
Q ss_pred cCCCCcccc
Q psy13692 252 IDTPGHTDS 260 (592)
Q Consensus 252 ID~PGH~~a 260 (592)
+ ++.|++.
T Consensus 72 ~-V~NH~~~ 79 (316)
T PF00128_consen 72 V-VPNHTSD 79 (316)
T ss_dssp E-ETSEEET
T ss_pred e-ecccccc
Confidence 8 5789863
No 37
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=85.15 E-value=3.4 Score=43.46 Aligned_cols=122 Identities=19% Similarity=0.248 Sum_probs=75.4
Q ss_pred CCCCcccceecCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeecCC-------ccccccccCCccccCCCCCCCCCCcHHH
Q psy13692 161 PQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQ-------SFPYESKKFPSLSLKGAFGPDAIYTEKM 233 (592)
Q Consensus 161 P~f~~RGlmLD~sR~f~~v~~ik~~Id~Ma~~KlN~lHwHltDdq-------sfp~e~~~~P~Lt~~Gay~p~~~YT~ed 233 (592)
|++.+ |++.-. ..+.+-+.++++++.|...++.+=.+.|-++- .|-+..++|| |
T Consensus 7 P~wa~-G~~~~~-~~y~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FP-----------------d 67 (308)
T cd06593 7 PAWSF-GLWLSR-SFYYDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFP-----------------D 67 (308)
T ss_pred chHHH-HHHHHc-ccCCCHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCC-----------------C
Confidence 55555 554422 24578899999999999999887666654422 1222222333 3
Q ss_pred HHHHHHHHHHcCCeEEeccCCCCccccccccC-----CCccccCCC------ccc-ccccccCCCCCChhHHHHHHHHHH
Q psy13692 234 IKNVIEYARLRGIRVIPEIDTPGHTDSMEPGM-----PQIHCHCPH------RVE-GKTFVGPLDPTKNVTLDFVRDLFT 301 (592)
Q Consensus 234 i~eIv~YA~~rGI~VIPEID~PGH~~a~~~~~-----P~l~~~c~~------~~~-g~~~~~~lnp~~~~ty~fl~~ll~ 301 (592)
.+++++..+++|++|+.-++ |. ...-...+ +++...-.+ ..+ |. ...+|.+||++.++..+.++
T Consensus 68 ~~~~i~~l~~~G~~~~~~~~-P~-i~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~--~~~~Dftnp~a~~w~~~~~~ 143 (308)
T cd06593 68 PEGMLSRLKEKGFKVCLWIN-PY-IAQKSPLFKEAAEKGYLVKKPDGSVWQWDLWQPG--MGIIDFTNPDACKWYKDKLK 143 (308)
T ss_pred HHHHHHHHHHCCCeEEEEec-CC-CCCCchhHHHHHHCCeEEECCCCCeeeecccCCC--cccccCCCHHHHHHHHHHHH
Confidence 58999999999999999876 43 21000001 111111000 000 11 35699999999999999999
Q ss_pred HHhh
Q psy13692 302 ELGQ 305 (592)
Q Consensus 302 Ev~~ 305 (592)
++.+
T Consensus 144 ~~~~ 147 (308)
T cd06593 144 PLLD 147 (308)
T ss_pred HHHH
Confidence 8776
No 38
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=83.87 E-value=6.5 Score=45.52 Aligned_cols=126 Identities=17% Similarity=0.241 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEeecC------------CccccccccCCccccCCCCC--CC-CCCcHHHHHHHHHHHHH
Q psy13692 179 IKAIKKQLDIMSYNKLNVLHWHLVDD------------QSFPYESKKFPSLSLKGAFG--PD-AIYTEKMIKNVIEYARL 243 (592)
Q Consensus 179 v~~ik~~Id~Ma~~KlN~lHwHltDd------------qsfp~e~~~~P~Lt~~Gay~--p~-~~YT~edi~eIv~YA~~ 243 (592)
..-|...||-+..+++|.+++=-.-+ -+|.|....|=.. .++|. |. +.-+.+|+|++|+-|.+
T Consensus 163 ~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~--~~~y~~~p~~~~~~~~efk~lV~~~H~ 240 (605)
T TIGR02104 163 PNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVP--EGSYSTNPYDPATRIRELKQMIQALHE 240 (605)
T ss_pred cccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCc--ChhhhcCCCccchHHHHHHHHHHHHHH
Confidence 34566788999999999888743211 0122222211000 01111 00 00125899999999999
Q ss_pred cCCeEEeccCCCCccccc-----cccCCCcccc-CCC-c-ccccccccCCCCCChhHHHHHHHHHHHHhhhc
Q psy13692 244 RGIRVIPEIDTPGHTDSM-----EPGMPQIHCH-CPH-R-VEGKTFVGPLDPTKNVTLDFVRDLFTELGQRF 307 (592)
Q Consensus 244 rGI~VIPEID~PGH~~a~-----~~~~P~l~~~-c~~-~-~~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~lF 307 (592)
+||+||-.+ ++.|+... ....|+.-.. ... . .++..+...+|-.++.+.+++.+.+.-+++-|
T Consensus 241 ~Gi~VilDv-V~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~ 311 (605)
T TIGR02104 241 NGIRVIMDV-VYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKEY 311 (605)
T ss_pred CCCEEEEEE-EcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHHc
Confidence 999999999 68998531 1111221100 000 0 00100012466678888888888777776543
No 39
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=83.53 E-value=11 Score=46.52 Aligned_cols=76 Identities=21% Similarity=0.184 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHcCCeEEeccCCCCcccccc---ccCCCccccC-CC-cccccccccCCCCCChhHHHHHHHHHHHHhh
Q psy13692 231 EKMIKNVIEYARLRGIRVIPEIDTPGHTDSME---PGMPQIHCHC-PH-RVEGKTFVGPLDPTKNVTLDFVRDLFTELGQ 305 (592)
Q Consensus 231 ~edi~eIv~YA~~rGI~VIPEID~PGH~~a~~---~~~P~l~~~c-~~-~~~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~ 305 (592)
.+|+|++|+-|.++||+||-.+ ++-|+.... ...|.+-..+ .+ .+......+.++..++.+.+++.+.+.-+++
T Consensus 554 i~EfK~LV~alH~~GI~VILDV-VyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ 632 (1111)
T TIGR02102 554 IAEFKNLINEIHKRGMGVILDV-VYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVD 632 (1111)
T ss_pred HHHHHHHHHHHHHCCCEEEEec-ccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999 689986421 1123221100 00 0000001234666777888888877777766
Q ss_pred hc
Q psy13692 306 RF 307 (592)
Q Consensus 306 lF 307 (592)
-|
T Consensus 633 ey 634 (1111)
T TIGR02102 633 EF 634 (1111)
T ss_pred hc
Confidence 44
No 40
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=82.48 E-value=4.6 Score=46.04 Aligned_cols=71 Identities=20% Similarity=0.327 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCC-------CCCcHHHHHHHHHHHHHcCCeEEe
Q psy13692 178 PIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPD-------AIYTEKMIKNVIEYARLRGIRVIP 250 (592)
Q Consensus 178 ~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~-------~~YT~edi~eIv~YA~~rGI~VIP 250 (592)
.+.-|.+-||.++..++|.+++=-. +++. .....|.+. .+=|.+|+++||+-|.++||+||-
T Consensus 26 dl~gi~~~Ldyl~~LGv~~i~L~Pi------~~~~-----~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vil 94 (539)
T TIGR02456 26 DFPGLTSKLDYLKWLGVDALWLLPF------FQSP-----LRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVII 94 (539)
T ss_pred CHHHHHHhHHHHHHCCCCEEEECCC------cCCC-----CCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEE
Confidence 4777888899999999998887421 1111 111122211 112789999999999999999999
Q ss_pred ccCCCCcccc
Q psy13692 251 EIDTPGHTDS 260 (592)
Q Consensus 251 EID~PGH~~a 260 (592)
.+ ++.|++.
T Consensus 95 D~-V~NH~s~ 103 (539)
T TIGR02456 95 DL-VLNHTSD 103 (539)
T ss_pred Ee-ccCcCCC
Confidence 99 7899863
No 41
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=82.31 E-value=11 Score=43.71 Aligned_cols=127 Identities=17% Similarity=0.163 Sum_probs=76.9
Q ss_pred ceecCCCC--CCC-HHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccC-----CCCCCCCCC-cHHHHHHHH
Q psy13692 168 LLVDGSRH--YLP-IKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLK-----GAFGPDAIY-TEKMIKNVI 238 (592)
Q Consensus 168 lmLD~sR~--f~~-v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~-----Gay~p~~~Y-T~edi~eIv 238 (592)
+|+-+-+. +.. .+...+.|+-++...+|.+-+=- +..||-=... |-|.|...| |++|+|.+|
T Consensus 150 lHvGs~~~~~~~~~~e~a~~llpYl~elG~T~IELMP---------v~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fV 220 (628)
T COG0296 150 LHVGSFTPDRFLGYFELAIELLPYLKELGITHIELMP---------VAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALV 220 (628)
T ss_pred EEeeeccCCCCcCHHHHHHHHhHHHHHhCCCEEEEcc---------cccCCCCCCCCCCcceeccccccCCCHHHHHHHH
Confidence 34444433 344 45667999999999999766632 2233322111 223444334 999999999
Q ss_pred HHHHHcCCeEEeccCCCCccccccccC----CCcccc------CCCcccccccccCCCCCChhHHHHHHHHHHHHhhhc
Q psy13692 239 EYARLRGIRVIPEIDTPGHTDSMEPGM----PQIHCH------CPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRF 307 (592)
Q Consensus 239 ~YA~~rGI~VIPEID~PGH~~a~~~~~----P~l~~~------c~~~~~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~lF 307 (592)
+.|.++||.||-.. +|||...-.... +..... ....+||. ...|-..+++..|+-+-.--.++.|
T Consensus 221 D~aH~~GIgViLD~-V~~HF~~d~~~L~~fdg~~~~e~~~~~~~~~~~Wg~---~i~~~gr~EVR~Fll~nal~Wl~~y 295 (628)
T COG0296 221 DAAHQAGIGVILDW-VPNHFPPDGNYLARFDGTFLYEHEDPRRGEHTDWGT---AIFNYGRNEVRNFLLANALYWLEEY 295 (628)
T ss_pred HHHHHcCCEEEEEe-cCCcCCCCcchhhhcCCccccccCCcccccCCCccc---chhccCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999998 899987532211 111100 01134443 2344457889998877655555544
No 42
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=82.29 E-value=5.4 Score=42.34 Aligned_cols=122 Identities=19% Similarity=0.276 Sum_probs=74.7
Q ss_pred CCCCCcccceecCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeecCCc-------------cccccccCCccccCCCCCCC
Q psy13692 160 FPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQS-------------FPYESKKFPSLSLKGAFGPD 226 (592)
Q Consensus 160 ~P~f~~RGlmLD~sR~f~~v~~ik~~Id~Ma~~KlN~lHwHltDdqs-------------fp~e~~~~P~Lt~~Gay~p~ 226 (592)
-|++.+.+.+ +|.+-+-+.++++++.|...++-.=.+||-|.+. |.+.-+.|
T Consensus 6 ~P~wa~G~~~---~~~~~s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~F------------ 70 (317)
T cd06594 6 LPDWAYGGAI---LGLQGGTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERY------------ 70 (317)
T ss_pred CchhhhCcEE---eeeeCCHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhC------------
Confidence 4666666565 3544599999999999999988766666633221 11122222
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEeccCCCCccccccccCCCcccc---CCCcccccc--------cccCCCCCChhHHHH
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCH---CPHRVEGKT--------FVGPLDPTKNVTLDF 295 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VIPEID~PGH~~a~~~~~P~l~~~---c~~~~~g~~--------~~~~lnp~~~~ty~f 295 (592)
-|.+++|+.-+++|++||+-|+ |+=...-...|.+.... +. .+.|.+ ....+|.+||++.+.
T Consensus 71 -----Pdp~~mi~~Lh~~G~~~~~~i~-P~v~~~~~~~y~~~~~~g~~vk-~~~g~~~~~~~w~g~~~~~Dftnp~a~~w 143 (317)
T cd06594 71 -----PGLDELIEELKARGIRVLTYIN-PYLADDGPLYYEEAKDAGYLVK-DADGSPYLVDFGEFDCGVLDLTNPAARDW 143 (317)
T ss_pred -----CCHHHHHHHHHHCCCEEEEEec-CceecCCchhHHHHHHCCeEEE-CCCCCeeeeccCCCCceeeecCCHHHHHH
Confidence 2468999999999999999887 65332100001111110 00 111110 124699999999999
Q ss_pred HHHHHHHH
Q psy13692 296 VRDLFTEL 303 (592)
Q Consensus 296 l~~ll~Ev 303 (592)
..+.++++
T Consensus 144 w~~~~~~~ 151 (317)
T cd06594 144 FKQVIKEM 151 (317)
T ss_pred HHHHHHHH
Confidence 98888876
No 43
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=82.22 E-value=5.3 Score=45.78 Aligned_cols=71 Identities=20% Similarity=0.374 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCCC-------CCcHHHHHHHHHHHHHcCCeEEe
Q psy13692 178 PIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDA-------IYTEKMIKNVIEYARLRGIRVIP 250 (592)
Q Consensus 178 ~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~~-------~YT~edi~eIv~YA~~rGI~VIP 250 (592)
.+.-|.+-||.++..++|.+++=-. +++ |.. ...|.+.. +=|.+|++++|+-|.++||+||-
T Consensus 31 dl~gi~~~ldyl~~lGv~~i~l~P~------~~~---~~~--~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vil 99 (551)
T PRK10933 31 DLRGVTQRLDYLQKLGVDAIWLTPF------YVS---PQV--DNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIIL 99 (551)
T ss_pred CHHHHHHhhHHHHhCCCCEEEECCC------CCC---CCC--CCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 4677778899999999998887321 111 111 11232222 22899999999999999999999
Q ss_pred ccCCCCcccc
Q psy13692 251 EIDTPGHTDS 260 (592)
Q Consensus 251 EID~PGH~~a 260 (592)
.+ ++-|++.
T Consensus 100 D~-V~NH~s~ 108 (551)
T PRK10933 100 DM-VFNHTST 108 (551)
T ss_pred EE-CCCCccC
Confidence 99 6899864
No 44
>COG3661 AguA Alpha-glucuronidase [Carbohydrate transport and metabolism]
Probab=81.94 E-value=21 Score=39.38 Aligned_cols=165 Identities=17% Similarity=0.255 Sum_probs=106.5
Q ss_pred CCCCeEEEEeCC----eEEEEecChhhHHHHHHHHhhCCCCCCCCCceeeeeeEEecCCCCCcccc----eecC--CCCC
Q psy13692 107 MDEKYTLEIKNS----SCLLTSQSIWGILRGLETFSQLPIPAPNGDQLIIRVQTIEDFPQFPHRGL----LVDG--SRHY 176 (592)
Q Consensus 107 ~~EsY~L~I~~~----~i~I~a~t~~Ga~~gl~TL~QL~~~~~~~~~~~i~~~~I~D~P~f~~RGl----mLD~--sR~f 176 (592)
..|+|-|.--.- ...|.|++..|++||+=-|+.|+...+ .+....|...|+-..|-+ .||- -|.|
T Consensus 92 gEEGy~irt~~~~g~~~lvi~g~t~~gvlYG~F~ll~liq~g~-----~v~kl~iv~~Pk~klRMlNhWDNlDg~iERGY 166 (684)
T COG3661 92 GEEGYLIRTVTVGGKATLVIAGNTDIGVLYGVFRLLSLIQTGQ-----SVDKLDIVSVPKVKLRMLNHWDNLDGHIERGY 166 (684)
T ss_pred cCcceEEEEEEeCCeEEEEEEeccceeEEeeHHHHHHHHHhcc-----chhhcchhcCcHHHHhhhhhhhccccceeccc
Confidence 589998865331 368899999999999877777775221 355566777777666654 1222 1222
Q ss_pred ------C----C---HHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHH
Q psy13692 177 ------L----P---IKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARL 243 (592)
Q Consensus 177 ------~----~---v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~ 243 (592)
+ + .+-+|..-+.+|...+|-.-+.-++-. +-++| -++. . =-.+++.|.+.-|.
T Consensus 167 aG~SIFf~~n~~~~n~qR~kDYAR~laSiGINg~v~NNVNvk----~~e~~-lit~-------~--fl~k~aklAdiFR~ 232 (684)
T COG3661 167 AGQSIFFWWNLPGHNDQRMKDYARALASIGINGTVLNNVNVK----KAESY-LITA-------P--FLAKAAKLADIFRP 232 (684)
T ss_pred CCCceeeeccccccchHHHHHHHHHHhhcCcceEEecccccc----hhhhh-eech-------H--hHHHHHHHHHHhhh
Confidence 1 1 367888889999999998876543311 00000 0110 0 12455666667789
Q ss_pred cCCeEEeccCCCCccccccccCCCccccCCCcccccccccCCCCCChhHHHHHHHHHHHHhhhcCC
Q psy13692 244 RGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPE 309 (592)
Q Consensus 244 rGI~VIPEID~PGH~~a~~~~~P~l~~~c~~~~~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~lFp~ 309 (592)
+||.|.-.|+.-.-+ +| |. ...-||.+|++..+-++-.+|+-...|+
T Consensus 233 YGIK~yLsinfaSP~--------~l---------Gg--L~TADPLDe~VrawWkeka~~IY~yIPD 279 (684)
T COG3661 233 YGIKVYLSINFASPM--------EL---------GG--LKTADPLDEAVRAWWKEKADEIYKYIPD 279 (684)
T ss_pred ccceEEEEeccCCcc--------cc---------CC--cCcCCcccHHHHHHHHHHHHHHHHhccc
Confidence 999999888743222 11 22 4567888899999999999999888885
No 45
>PF03648 Glyco_hydro_67N: Glycosyl hydrolase family 67 N-terminus; InterPro: IPR005154 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This represents a family of alpha-glucuronidases (GH67 from CAZY). Deletion mutants have indicated that the central region is responsible for the catalytic activity. Within this central domain, the invariant Glu and Asp (residues 391 and 364 respectively from Bacillus stearothermophilus (Geobacillus stearothermophilus)) are thought to from the the catalytic centre [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process; PDB: 1GQL_A 1GQI_B 1GQJ_B 1GQK_A 1H41_A 1MQR_A 1K9F_A 1K9E_A 1L8N_A 1K9D_A ....
Probab=81.50 E-value=2.1 Score=38.91 Aligned_cols=30 Identities=17% Similarity=0.335 Sum_probs=25.6
Q ss_pred CCCCeEEEE----eCCeEEEEecChhhHHHHHHH
Q psy13692 107 MDEKYTLEI----KNSSCLLTSQSIWGILRGLET 136 (592)
Q Consensus 107 ~~EsY~L~I----~~~~i~I~a~t~~Ga~~gl~T 136 (592)
.+|||.|+. ..+.+.|.|++..|++||.=.
T Consensus 88 ~~EGy~I~~v~~~~~~~lvI~g~~~~G~LYGvF~ 121 (122)
T PF03648_consen 88 GEEGYIIRTVEIGGKNVLVIAGKTERGVLYGVFH 121 (122)
T ss_dssp STT-EEEEEEESSSSEEEEEEESSHHHHHHHHHH
T ss_pred CCccEEEEEEecCCCCEEEEEeCCCcEEEEEEee
Confidence 589999999 667899999999999999743
No 46
>PRK10785 maltodextrin glucosidase; Provisional
Probab=80.29 E-value=6.2 Score=45.63 Aligned_cols=74 Identities=11% Similarity=0.243 Sum_probs=54.2
Q ss_pred CCCCC--HHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCC-------CCCcHHHHHHHHHHHHHc
Q psy13692 174 RHYLP--IKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPD-------AIYTEKMIKNVIEYARLR 244 (592)
Q Consensus 174 R~f~~--v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~-------~~YT~edi~eIv~YA~~r 244 (592)
+.|+. ++-|.+-||-+..+++|.+.+--. ++++++ -.|... .+=|.+|+++||+-|.+|
T Consensus 171 ~~f~GGDl~GI~~kLdYL~~LGv~~I~L~Pi------f~s~s~------hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~r 238 (598)
T PRK10785 171 STFYGGDLDGISEKLPYLKKLGVTALYLNPI------FTAPSV------HKYDTEDYRHVDPQLGGDAALLRLRHATQQR 238 (598)
T ss_pred ccccCcCHHHHHHHHHHHHHcCCCEEEeCCc------ccCCCC------CCcCcccccccCcccCCHHHHHHHHHHHHHC
Confidence 45664 889999999999999999887431 122111 112211 222889999999999999
Q ss_pred CCeEEeccCCCCcccc
Q psy13692 245 GIRVIPEIDTPGHTDS 260 (592)
Q Consensus 245 GI~VIPEID~PGH~~a 260 (592)
||+||-.+ ++.|++.
T Consensus 239 GikVilD~-V~NH~~~ 253 (598)
T PRK10785 239 GMRLVLDG-VFNHTGD 253 (598)
T ss_pred CCEEEEEE-CCCcCCC
Confidence 99999999 6899874
No 47
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=79.97 E-value=8 Score=40.71 Aligned_cols=127 Identities=16% Similarity=0.163 Sum_probs=73.7
Q ss_pred CCCCHHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCC-CCCcHHHHHHHHHHHHHcCCeEEeccC
Q psy13692 175 HYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPD-AIYTEKMIKNVIEYARLRGIRVIPEID 253 (592)
Q Consensus 175 ~f~~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~-~~YT~edi~eIv~YA~~rGI~VIPEID 253 (592)
..++-+.|+++++.|...++..=.+++-|+ |- . ..|.|.-+ ..|- +.+++++.-+++|+++++-|+
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~--w~---~------~~g~f~~d~~~FP--dp~~mi~~l~~~G~k~~l~i~ 91 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDN--WE---T------CYGDFDFDPTKFP--DPKGMIDQLHDLGFRVTLWVH 91 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCC--cc---c------cCCccccChhhCC--CHHHHHHHHHHCCCeEEEEEC
Confidence 356789999999999999987555555332 21 0 11222211 1222 478999999999999999886
Q ss_pred CCCccccccccCCC-----ccccCCC-------ccc-ccccccCCCCCChhHHHHHHHHHHHHhhhcCCCeEEecCCc
Q psy13692 254 TPGHTDSMEPGMPQ-----IHCHCPH-------RVE-GKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDE 318 (592)
Q Consensus 254 ~PGH~~a~~~~~P~-----l~~~c~~-------~~~-g~~~~~~lnp~~~~ty~fl~~ll~Ev~~lFp~~~~HiGGDE 318 (592)
|+-... ...+.+ +...-.+ ..+ |. ...+|.+||++.++..+.++++..--.-.+|=+=+-|
T Consensus 92 -P~i~~~-s~~~~e~~~~g~~vk~~~g~~~~~~~~w~g~--~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E 165 (303)
T cd06592 92 -PFINTD-SENFREAVEKGYLVSEPSGDIPALTRWWNGT--AAVLDFTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGE 165 (303)
T ss_pred -CeeCCC-CHHHHhhhhCCeEEECCCCCCCcccceecCC--cceEeCCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCC
Confidence 532210 011111 1110000 001 22 3579999999999999999988732233344333334
No 48
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=79.72 E-value=6.3 Score=41.26 Aligned_cols=121 Identities=15% Similarity=0.177 Sum_probs=71.0
Q ss_pred CCCCCcccceecCCC-CCCCHHHHHHHHHHHhhCCCcEEEEEeecC-C-------------ccccccccCCccccCCCCC
Q psy13692 160 FPQFPHRGLLVDGSR-HYLPIKAIKKQLDIMSYNKLNVLHWHLVDD-Q-------------SFPYESKKFPSLSLKGAFG 224 (592)
Q Consensus 160 ~P~f~~RGlmLD~sR-~f~~v~~ik~~Id~Ma~~KlN~lHwHltDd-q-------------sfp~e~~~~P~Lt~~Gay~ 224 (592)
-|++.+ |++. || .+.+-+.++++++.+...++-.=.+|+-++ + .|.+.-+.|
T Consensus 7 ~P~wal-G~~q--sr~~y~s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~F---------- 73 (292)
T cd06595 7 LPRYAF-GNWW--SRYWPYSDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLF---------- 73 (292)
T ss_pred CchHHH-HhHh--hCCcCCCHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcC----------
Confidence 366666 7764 46 467899999999999998887655555222 1 122222223
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCeEEeccCCCCccc-cccccCCCcccc-CCCcccccccccCCCCCChhHHHHH-HHHHH
Q psy13692 225 PDAIYTEKMIKNVIEYARLRGIRVIPEIDTPGHTD-SMEPGMPQIHCH-CPHRVEGKTFVGPLDPTKNVTLDFV-RDLFT 301 (592)
Q Consensus 225 p~~~YT~edi~eIv~YA~~rGI~VIPEID~PGH~~-a~~~~~P~l~~~-c~~~~~g~~~~~~lnp~~~~ty~fl-~~ll~ 301 (592)
-|.+++++.-++.|++||.-++ |+... .-...|.++... ..+...+. ...+|.++|++.+.- +.+.+
T Consensus 74 -------Pdp~~mi~~Lh~~G~k~v~~v~-P~~~~~~~~~~y~~~~~~~~~~~~~~~--~~~~D~tnp~a~~~w~~~~~~ 143 (292)
T cd06595 74 -------PDPEKLLQDLHDRGLKVTLNLH-PADGIRAHEDQYPEMAKALGVDPATEG--PILFDLTNPKFMDAYFDNVHR 143 (292)
T ss_pred -------CCHHHHHHHHHHCCCEEEEEeC-CCcccCCCcHHHHHHHHhcCCCcccCC--eEEecCCCHHHHHHHHHHHHH
Confidence 3458899999999999998886 65321 111113332211 00111111 347899999998744 44444
Q ss_pred HH
Q psy13692 302 EL 303 (592)
Q Consensus 302 Ev 303 (592)
.+
T Consensus 144 ~~ 145 (292)
T cd06595 144 PL 145 (292)
T ss_pred HH
Confidence 43
No 49
>PLN02877 alpha-amylase/limit dextrinase
Probab=79.40 E-value=66 Score=39.39 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHcCCeEEeccCCCCcccc
Q psy13692 231 EKMIKNVIEYARLRGIRVIPEIDTPGHTDS 260 (592)
Q Consensus 231 ~edi~eIv~YA~~rGI~VIPEID~PGH~~a 260 (592)
..|+|++|+-+.++||+||..+ ++-|+..
T Consensus 465 I~efk~mV~~lH~~GI~VImDV-VyNHt~~ 493 (970)
T PLN02877 465 IIEFRKMVQALNRIGLRVVLDV-VYNHLHS 493 (970)
T ss_pred HHHHHHHHHHHHHCCCEEEEEE-CCccccC
Confidence 4689999999999999999998 7899853
No 50
>PLN02784 alpha-amylase
Probab=78.96 E-value=8.1 Score=46.18 Aligned_cols=83 Identities=16% Similarity=0.113 Sum_probs=56.5
Q ss_pred ccceecCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCC-------CCCcHHHHHHHH
Q psy13692 166 RGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPD-------AIYTEKMIKNVI 238 (592)
Q Consensus 166 RGlmLD~sR~f~~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~-------~~YT~edi~eIv 238 (592)
.||.-|+-.+--=-..|++-+|.++.+++|.+.+--. +++. +. ..|.+. .+=|.+|++++|
T Consensus 507 QgF~Wds~~dg~w~~~I~ekldyL~~LG~taIWLpP~------~~s~-----s~-~GY~p~D~y~lds~yGT~~ELk~LI 574 (894)
T PLN02784 507 QGFNWESHKSGRWYMELGEKAAELSSLGFTVVWLPPP------TESV-----SP-EGYMPKDLYNLNSRYGTIDELKDLV 574 (894)
T ss_pred EeEEcCcCCCCchHHHHHHHHHHHHHhCCCEEEeCCC------CCCC-----CC-CCcCcccccccCcCcCCHHHHHHHH
Confidence 3444454433111578888999999999998887431 1111 11 123332 223899999999
Q ss_pred HHHHHcCCeEEeccCCCCccccc
Q psy13692 239 EYARLRGIRVIPEIDTPGHTDSM 261 (592)
Q Consensus 239 ~YA~~rGI~VIPEID~PGH~~a~ 261 (592)
+-|+++||+||..+ ++.|+.++
T Consensus 575 ~a~H~~GIkVIlDi-ViNH~ag~ 596 (894)
T PLN02784 575 KSFHEVGIKVLGDA-VLNHRCAH 596 (894)
T ss_pred HHHHHCCCEEEEEE-Cccccccc
Confidence 99999999999999 78998754
No 51
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=78.94 E-value=13 Score=46.64 Aligned_cols=113 Identities=16% Similarity=0.165 Sum_probs=67.3
Q ss_pred HHHHHHhhCCCcEEEEEeecCCccccccccCCccccCC-----CCC------CCCCC---cHHHHHHHHHHHHHcCCeEE
Q psy13692 184 KQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKG-----AFG------PDAIY---TEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 184 ~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~G-----ay~------p~~~Y---T~edi~eIv~YA~~rGI~VI 249 (592)
..|+-+..+++|.+++=-.- +......+...| .|. +...| |.+|+|++|+-|.++||+||
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~------~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VI 264 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIF------ASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVI 264 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCcc------ccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEE
Confidence 55778888999988773221 111111111111 133 33444 79999999999999999999
Q ss_pred eccCCCCccccccccCCCccccC------CC----------cccccccccCCCCCChhHHHHHHHHHHHHhh
Q psy13692 250 PEIDTPGHTDSMEPGMPQIHCHC------PH----------RVEGKTFVGPLDPTKNVTLDFVRDLFTELGQ 305 (592)
Q Consensus 250 PEID~PGH~~a~~~~~P~l~~~c------~~----------~~~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~ 305 (592)
-.+ ++.|++.-....|.+.... +. ..+|. -+.+|..++.+.+++.+.++-.+.
T Consensus 265 LDv-V~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~--gn~~n~~~p~v~~~i~d~lr~Wv~ 333 (1221)
T PRK14510 265 LDV-VFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGC--GNLPNLERPFILRLPMDVLRSWAK 333 (1221)
T ss_pred EEE-ccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCC--CCccccCCHHHHHHHHHHHHHHHH
Confidence 999 7899874322122221000 00 01111 124666788999998888888877
No 52
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=78.90 E-value=7.8 Score=43.48 Aligned_cols=71 Identities=13% Similarity=0.253 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCCCCC----------------cHHHHHHHHHHHHH
Q psy13692 180 KAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIY----------------TEKMIKNVIEYARL 243 (592)
Q Consensus 180 ~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~~~Y----------------T~edi~eIv~YA~~ 243 (592)
..|.+-||.++.+.+|.+-+=- ++++.+. ...-.|.+..+| |.+|+++||+-|.+
T Consensus 22 ~~I~~kldyl~~LGvtaIwl~P------~~~~~~~---~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~ 92 (479)
T PRK09441 22 NRLAERAPELAEAGITAVWLPP------AYKGTSG---GYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHE 92 (479)
T ss_pred HHHHHHHHHHHHcCCCEEEeCC------CccCCCC---CCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHH
Confidence 4567778999999999887632 1111100 000112222333 89999999999999
Q ss_pred cCCeEEeccCCCCcccc
Q psy13692 244 RGIRVIPEIDTPGHTDS 260 (592)
Q Consensus 244 rGI~VIPEID~PGH~~a 260 (592)
|||+||-.+ ++-|++.
T Consensus 93 ~Gi~vi~D~-V~NH~~~ 108 (479)
T PRK09441 93 NGIKVYADV-VLNHKAG 108 (479)
T ss_pred CCCEEEEEE-CcccccC
Confidence 999999999 7999973
No 53
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=77.77 E-value=7.8 Score=46.56 Aligned_cols=76 Identities=12% Similarity=0.190 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHHhhCCCcEEEEEeec----CCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEecc
Q psy13692 177 LPIKAIKKQLDIMSYNKLNVLHWHLVD----DQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVIPEI 252 (592)
Q Consensus 177 ~~v~~ik~~Id~Ma~~KlN~lHwHltD----dqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VIPEI 252 (592)
++.+.+.+.|+.++..++|.+.+--.- ...+.|.+..|-.+.. .+=|.+|++++++-|+++||.||-.|
T Consensus 17 ~tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp-------~lGt~e~f~~Lv~aah~~Gi~VIlDi 89 (879)
T PRK14511 17 FTFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINP-------ELGGEEGLRRLAAALRAHGMGLILDI 89 (879)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCC-------CCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 567888999999999999977764210 0112222222211111 11288999999999999999999999
Q ss_pred CCCCcccc
Q psy13692 253 DTPGHTDS 260 (592)
Q Consensus 253 D~PGH~~a 260 (592)
+|-|++.
T Consensus 90 -V~NH~~~ 96 (879)
T PRK14511 90 -VPNHMAV 96 (879)
T ss_pred -ccccccC
Confidence 7899864
No 54
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=77.51 E-value=49 Score=40.27 Aligned_cols=28 Identities=18% Similarity=0.424 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHcCCeEEeccCCCCcccc
Q psy13692 232 KMIKNVIEYARLRGIRVIPEIDTPGHTDS 260 (592)
Q Consensus 232 edi~eIv~YA~~rGI~VIPEID~PGH~~a 260 (592)
+|+|++|+-|.++||+||-.+ ++-|+..
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV-VyNHt~~ 431 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV-VYNHTNA 431 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe-ecccccc
Confidence 699999999999999999999 6888874
No 55
>PLN02361 alpha-amylase
Probab=77.33 E-value=9.1 Score=42.12 Aligned_cols=67 Identities=13% Similarity=0.243 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCC-------CCCcHHHHHHHHHHHHHcCCeEEecc
Q psy13692 180 KAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPD-------AIYTEKMIKNVIEYARLRGIRVIPEI 252 (592)
Q Consensus 180 ~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~-------~~YT~edi~eIv~YA~~rGI~VIPEI 252 (592)
+.|++-||.++...++.+.+=- ++++.+. . .|.+. .+=|++|++++|+-|+++||+||..+
T Consensus 29 ~~i~~kl~~l~~lG~t~iwl~P------~~~~~~~-----~-GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 29 RNLEGKVPDLAKSGFTSAWLPP------PSQSLAP-----E-GYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHHHHcCCCEEEeCC------CCcCCCC-----C-CCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 6678888999999999887632 1122111 1 13222 22389999999999999999999999
Q ss_pred CCCCccc
Q psy13692 253 DTPGHTD 259 (592)
Q Consensus 253 D~PGH~~ 259 (592)
++-|+.
T Consensus 97 -V~NH~~ 102 (401)
T PLN02361 97 -VINHRV 102 (401)
T ss_pred -cccccc
Confidence 578874
No 56
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=74.64 E-value=12 Score=44.84 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHHHHhhCCCcEEEEEee----cCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEec
Q psy13692 176 YLPIKAIKKQLDIMSYNKLNVLHWHLV----DDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVIPE 251 (592)
Q Consensus 176 f~~v~~ik~~Id~Ma~~KlN~lHwHlt----Ddqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VIPE 251 (592)
=+..+.+.+.|+.++..++|.+.+=-. +...+.|.+..|-.+.. .+=|.+|++++++-|+++||.||-.
T Consensus 12 ~~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp-------~lGt~edf~~Lv~aah~~Gm~vIlD 84 (825)
T TIGR02401 12 GFTFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINP-------ELGGEEGLRRLSEAARARGLGLIVD 84 (825)
T ss_pred CCCHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCC-------CCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 356788999999999999997765321 00112222222211111 1128999999999999999999999
Q ss_pred cCCCCcccc
Q psy13692 252 IDTPGHTDS 260 (592)
Q Consensus 252 ID~PGH~~a 260 (592)
| +|-|++.
T Consensus 85 i-VpNH~a~ 92 (825)
T TIGR02401 85 I-VPNHMAV 92 (825)
T ss_pred e-ccccccc
Confidence 9 6999974
No 57
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=73.84 E-value=13 Score=39.35 Aligned_cols=121 Identities=14% Similarity=0.143 Sum_probs=73.5
Q ss_pred CCCCcccceecCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeecCC-----------ccccccccCCccccCCCCCCCCCC
Q psy13692 161 PQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQ-----------SFPYESKKFPSLSLKGAFGPDAIY 229 (592)
Q Consensus 161 P~f~~RGlmLD~sR~f~~v~~ik~~Id~Ma~~KlN~lHwHltDdq-----------sfp~e~~~~P~Lt~~Gay~p~~~Y 229 (592)
|++.+ |++.-. -.+.+-+.+.++|+.|...++-+=.+++-++- .|.+..+.||
T Consensus 7 P~wa~-G~~~s~-~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FP-------------- 70 (317)
T cd06598 7 PRWAL-GNWASR-FGYRNWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFP-------------- 70 (317)
T ss_pred chHHH-HHHHhc-CCCCCHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCC--------------
Confidence 56666 666422 24457899999999999988875444443210 2333333333
Q ss_pred cHHHHHHHHHHHHHcCCeEEeccCCCC-ccccccccCCCccc------cCCC-cc------cccccccCCCCCChhHHHH
Q psy13692 230 TEKMIKNVIEYARLRGIRVIPEIDTPG-HTDSMEPGMPQIHC------HCPH-RV------EGKTFVGPLDPTKNVTLDF 295 (592)
Q Consensus 230 T~edi~eIv~YA~~rGI~VIPEID~PG-H~~a~~~~~P~l~~------~c~~-~~------~g~~~~~~lnp~~~~ty~f 295 (592)
|.+++++.-+++||+|++-++ |+ ...+ ..|.++.. ...+ .+ .|. .+.+|-+||++.+.
T Consensus 71 ---dp~~mi~~L~~~G~k~~~~v~-P~v~~~~--~~y~e~~~~g~l~~~~~~~~~~~~~~w~g~--~~~~Dftnp~a~~w 142 (317)
T cd06598 71 ---DPAGMIADLAKKGVKTIVITE-PFVLKNS--KNWGEAVKAGALLKKDQGGVPTLFDFWFGN--TGLIDWFDPAAQAW 142 (317)
T ss_pred ---CHHHHHHHHHHcCCcEEEEEc-CcccCCc--hhHHHHHhCCCEEEECCCCCEeeeeccCCC--ccccCCCCHHHHHH
Confidence 457899999999999999987 33 1111 11111111 1100 00 122 35789999999999
Q ss_pred HHHHHHHHhh
Q psy13692 296 VRDLFTELGQ 305 (592)
Q Consensus 296 l~~ll~Ev~~ 305 (592)
..+.++++.+
T Consensus 143 ~~~~~~~~~~ 152 (317)
T cd06598 143 FHDNYKKLID 152 (317)
T ss_pred HHHHHHHhhh
Confidence 9999988744
No 58
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=73.23 E-value=11 Score=41.60 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=21.4
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VI 249 (592)
..|+.+++++|++.|+++||-||
T Consensus 205 ~v~~~~~l~~i~~~a~~~~i~ii 227 (430)
T PLN00145 205 SVYSYEHLAKIAETARKLGILVI 227 (430)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEE
Confidence 57999999999999999999887
No 59
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=72.76 E-value=16 Score=40.17 Aligned_cols=162 Identities=19% Similarity=0.189 Sum_probs=89.0
Q ss_pred EEecChhhHHHHHHHHhhCCCCCCCCCceeeeeeEEecCCCCCcccceecCCCCC-CCHHHHHHHHHHHhhCCCcEEEEE
Q psy13692 122 LTSQSIWGILRGLETFSQLPIPAPNGDQLIIRVQTIEDFPQFPHRGLLVDGSRHY-LPIKAIKKQLDIMSYNKLNVLHWH 200 (592)
Q Consensus 122 I~a~t~~Ga~~gl~TL~QL~~~~~~~~~~~i~~~~I~D~P~f~~RGlmLD~sR~f-~~v~~ik~~Id~Ma~~KlN~lHwH 200 (592)
+.|.++..++.....|..- -.=-|++.+ |+++ +|.. .+.+.++++|+.|...++-.=.++
T Consensus 3 ~~G~~~~~v~~~y~~ltG~----------------~~~pP~wal-G~~~--~~~~~~~~~~v~~~i~~~~~~~iP~d~~~ 63 (441)
T PF01055_consen 3 FSGPTPKEVLRQYTELTGR----------------PPLPPRWAL-GFWQ--SRWGYYNQDEVREVIDRYRSNGIPLDVIW 63 (441)
T ss_dssp EEESSHHHHHHHHHHHHSS----------------S----GGGG-SEEE--EESTBTSHHHHHHHHHHHHHTT--EEEEE
T ss_pred EeCcCHHHHHHHHHHHHCC----------------CCCCchhhh-ceEe--ecCcCCCHHHHHHHHHHHHHcCCCcccee
Confidence 5667777776666555421 112367777 8887 5544 468999999999999999876666
Q ss_pred eecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEeccCCCCccccc-cccC-----CCccccCCC
Q psy13692 201 LVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVIPEIDTPGHTDSM-EPGM-----PQIHCHCPH 274 (592)
Q Consensus 201 ltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VIPEID~PGH~~a~-~~~~-----P~l~~~c~~ 274 (592)
+-++- .. .+..++ +++ ..+ .+.+++++..+++||++++-++--=+..+- ...+ .++...-.+
T Consensus 64 iD~~~----~~-~~~~f~----~d~-~~F--Pd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~~~~~~v~~~~ 131 (441)
T PF01055_consen 64 IDDDY----QD-GYGDFT----WDP-ERF--PDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEAKEKGYLVKNPD 131 (441)
T ss_dssp E-GGG----SB-TTBTT-----B-T-TTT--TTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHHHHTT-BEBCTT
T ss_pred ccccc----cc-cccccc----ccc-ccc--cchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhHhhcCceeeccc
Confidence 64431 11 111111 111 112 277999999999999999887531111111 0001 111111000
Q ss_pred ------ccc-ccccccCCCCCChhHHHHHHHHHHHHhhhcCCCeEEecC
Q psy13692 275 ------RVE-GKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGG 316 (592)
Q Consensus 275 ------~~~-g~~~~~~lnp~~~~ty~fl~~ll~Ev~~lFp~~~~HiGG 316 (592)
..+ |. .+.+|.+++++.++..+.++++.+.+.-..+=+-.
T Consensus 132 g~~~~~~~w~g~--~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~ 178 (441)
T PF01055_consen 132 GSPYIGRVWPGK--GGFIDFTNPEARDWWKEQLKELLDDYGVDGWWLDF 178 (441)
T ss_dssp SSB-EEEETTEE--EEEB-TTSHHHHHHHHHHHHHHHTTST-SEEEEES
T ss_pred CCcccccccCCc--ccccCCCChhHHHHHHHHHHHHHhccCCceEEeec
Confidence 001 11 35699999999999999999998886544444433
No 60
>PLN02187 rooty/superroot1
Probab=71.58 E-value=13 Score=41.34 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=21.1
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VI 249 (592)
..||.+++++|++.|+++||-||
T Consensus 219 ~v~s~e~l~~i~~~a~~~~i~iI 241 (462)
T PLN02187 219 NVYSHDHLKKVAETARKLGIMVI 241 (462)
T ss_pred CccCHHHHHHHHHHHHHCCCEEE
Confidence 56999999999999999998777
No 61
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=69.68 E-value=13 Score=40.71 Aligned_cols=24 Identities=33% Similarity=0.623 Sum_probs=22.5
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEe
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVIP 250 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VIP 250 (592)
.+||++++++|+++|+++||-||-
T Consensus 178 av~~~~~l~~i~~~a~~~~i~ii~ 201 (393)
T COG0436 178 AVYSKEELKAIVELAREHDIIIIS 201 (393)
T ss_pred cCCCHHHHHHHHHHHHHcCeEEEE
Confidence 679999999999999999999885
No 62
>PLN03244 alpha-amylase; Provisional
Probab=69.58 E-value=14 Score=44.01 Aligned_cols=75 Identities=15% Similarity=0.065 Sum_probs=52.5
Q ss_pred CcHHHHHHHHHHHHHcCCeEEeccCCCCccccccccCCCcc---ccCCC--------cccccccccCCCCCChhHHHHHH
Q psy13692 229 YTEKMIKNVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIH---CHCPH--------RVEGKTFVGPLDPTKNVTLDFVR 297 (592)
Q Consensus 229 YT~edi~eIv~YA~~rGI~VIPEID~PGH~~a~~~~~P~l~---~~c~~--------~~~g~~~~~~lnp~~~~ty~fl~ 297 (592)
=|.+|+|++|+-|.++||.||-.+ ++.|+..-......+. ..++- ..||. ..+|..++++.+||-
T Consensus 438 GTPeDLK~LVD~aH~~GI~VILDv-V~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs---~~fnyg~~EVr~FLL 513 (872)
T PLN03244 438 GTPDDFKRLVDEAHGLGLLVFLDI-VHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGT---RMFKYGDLDVLHFLI 513 (872)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEe-cCccCCCccccchhhcCCCccceeccCCCCccCCCCC---ceecCCCHHHHHHHH
Confidence 389999999999999999999999 6899974210000000 00111 22332 357888999999999
Q ss_pred HHHHHHhhhc
Q psy13692 298 DLFTELGQRF 307 (592)
Q Consensus 298 ~ll~Ev~~lF 307 (592)
+.+.-+++-|
T Consensus 514 sna~yWleEy 523 (872)
T PLN03244 514 SNLNWWITEY 523 (872)
T ss_pred HHHHHHHHHh
Confidence 9988888755
No 63
>PRK10658 putative alpha-glucosidase; Provisional
Probab=69.22 E-value=92 Score=36.70 Aligned_cols=125 Identities=18% Similarity=0.243 Sum_probs=74.4
Q ss_pred CCCCcccceecCCCCC-CCHHHHHHHHHHHhhCCCcEEEEEeecC--C-----ccccccccCCccccCCCCCCCCCCcHH
Q psy13692 161 PQFPHRGLLVDGSRHY-LPIKAIKKQLDIMSYNKLNVLHWHLVDD--Q-----SFPYESKKFPSLSLKGAFGPDAIYTEK 232 (592)
Q Consensus 161 P~f~~RGlmLD~sR~f-~~v~~ik~~Id~Ma~~KlN~lHwHltDd--q-----sfp~e~~~~P~Lt~~Gay~p~~~YT~e 232 (592)
|++.+ |+.+-.+... .+-+.+.++++.|...++-.=.+|+-.+ . .|.+..+.||
T Consensus 264 P~Wal-G~w~s~~~~~~~~e~~v~~~~~~~r~~~iP~d~i~lD~~w~~~~~~~~f~wd~~~FP----------------- 325 (665)
T PRK10658 264 PAWSF-GLWLTTSFTTNYDEATVNSFIDGMAERDLPLHVFHFDCFWMKEFQWCDFEWDPRTFP----------------- 325 (665)
T ss_pred chhhh-heeeecccccCCCHHHHHHHHHHHHHcCCCceEEEEchhhhcCCceeeeEEChhhCC-----------------
Confidence 77777 7777554322 4677899999999998887555555221 0 1222222222
Q ss_pred HHHHHHHHHHHcCCeEEeccCCCCccc-c--cccc-CCCccccCCC-cc-----c-ccccccCCCCCChhHHHHHHHHHH
Q psy13692 233 MIKNVIEYARLRGIRVIPEIDTPGHTD-S--MEPG-MPQIHCHCPH-RV-----E-GKTFVGPLDPTKNVTLDFVRDLFT 301 (592)
Q Consensus 233 di~eIv~YA~~rGI~VIPEID~PGH~~-a--~~~~-~P~l~~~c~~-~~-----~-g~~~~~~lnp~~~~ty~fl~~ll~ 301 (592)
|.+++++.-+++||+|+.-|+ |+=.. + ...+ ..++...-.+ .+ | |. ...+|.+||++.+...+.++
T Consensus 326 dp~~mi~~L~~~G~k~~~~i~-P~i~~~s~~f~e~~~~gy~vk~~~G~~~~~~~W~g~--~~~~Dftnp~ar~W~~~~~~ 402 (665)
T PRK10658 326 DPEGMLKRLKAKGLKICVWIN-PYIAQKSPLFKEGKEKGYLLKRPDGSVWQWDKWQPG--MAIVDFTNPDACKWYADKLK 402 (665)
T ss_pred CHHHHHHHHHHCCCEEEEecc-CCcCCCchHHHHHHHCCeEEECCCCCEeeeeecCCC--ceeecCCCHHHHHHHHHHHH
Confidence 347789999999999998886 43110 0 0000 0011111011 11 1 11 34699999999999999998
Q ss_pred HHhhh
Q psy13692 302 ELGQR 306 (592)
Q Consensus 302 Ev~~l 306 (592)
++.++
T Consensus 403 ~l~d~ 407 (665)
T PRK10658 403 GLLDM 407 (665)
T ss_pred HHHhc
Confidence 87664
No 64
>KOG0259|consensus
Probab=68.69 E-value=9 Score=41.63 Aligned_cols=32 Identities=38% Similarity=0.600 Sum_probs=28.3
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEeccCCCCccc
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVIPEIDTPGHTD 259 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VIPEID~PGH~~ 259 (592)
.+||.+-+++|.+.|+++||-||-. ++-||+-
T Consensus 214 nVys~~HL~kiae~A~klgi~vIaD-EVY~~~v 245 (447)
T KOG0259|consen 214 NVYSEDHLKKIAETAKKLGIMVIAD-EVYGHTV 245 (447)
T ss_pred ccccHHHHHHHHHHHHHhCCeEEeh-hhcceee
Confidence 7999999999999999999999964 4678875
No 65
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=66.10 E-value=2.8e+02 Score=32.84 Aligned_cols=164 Identities=12% Similarity=0.120 Sum_probs=86.6
Q ss_pred cccceecCCCCCCC-----HHHHHHHHHHHhhCCCcEEEEEeecCCc--cccccccCCccccCCCCCCCCCCcHHHHHHH
Q psy13692 165 HRGLLVDGSRHYLP-----IKAIKKQLDIMSYNKLNVLHWHLVDDQS--FPYESKKFPSLSLKGAFGPDAIYTEKMIKNV 237 (592)
Q Consensus 165 ~RGlmLD~sR~f~~-----v~~ik~~Id~Ma~~KlN~lHwHltDdqs--fp~e~~~~P~Lt~~Gay~p~~~YT~edi~eI 237 (592)
-|-+++|.---|-| .+.|..+||.|...++|++-++.--|.. =-+.+.=||.=..-| ....|++=..
T Consensus 314 ~r~~h~dld~vyd~dp~qq~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~---r~d~f~~~aw--- 387 (671)
T PRK14582 314 QRVMHIDLDYVYDENPQQQDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPM---RADLFNRVAW--- 387 (671)
T ss_pred EEEEEeccccccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCcccccc---ccCCcCHHHH---
Confidence 45666655433322 3678899999999999999998722210 011222223200001 0122333221
Q ss_pred HHHHHHcCCeEEeccCCCCccccccccCCC---ccc-cCCCcccccccccCCCCCChhHHHHHHHHHHHHhhhcCCCeEE
Q psy13692 238 IEYARLRGIRVIPEIDTPGHTDSMEPGMPQ---IHC-HCPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVH 313 (592)
Q Consensus 238 v~YA~~rGI~VIPEID~PGH~~a~~~~~P~---l~~-~c~~~~~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~lFp~~~~H 313 (592)
+.|..+||+|---+.+-+=.. ....|. +.. ......... .++.|||.+|++.++|++|+.|++.-.+-.=||
T Consensus 388 -~l~~r~~v~v~AWmp~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~rl~P~~pe~r~~i~~i~~dla~~~~~dGil 463 (671)
T PRK14582 388 -QLRTRAGVNVYAWMPVLSFDL--DPTLPRVKRLDTGEGKAQIHPE-QYRRLSPFDDRVRAQVGMLYEDLAGHAAFDGIL 463 (671)
T ss_pred -HHHHhhCCEEEEeccceeecc--CCCcchhhhccccCCccccCCC-CCcCCCCCCHHHHHHHHHHHHHHHHhCCCceEE
Confidence 227888999987765543211 011111 100 000000000 134699999999999999999999865544444
Q ss_pred ecCCcccccccc-CCHHHHHHHHhCCC
Q psy13692 314 LGGDEVDFFCWE-QNPEIKAFMSTRQW 339 (592)
Q Consensus 314 iGGDEv~~~~w~-~~p~~~~~m~~~g~ 339 (592)
+= |+..+..++ .+|.-.+.-++.|+
T Consensus 464 f~-Dd~~l~d~ed~s~~a~~~~~~~g~ 489 (671)
T PRK14582 464 FH-DDAVLSDYEDASAPAITAYQQAGF 489 (671)
T ss_pred ec-ccccccccccCCHHHHHHHHHcCC
Confidence 43 444444443 35544444456776
No 66
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=65.76 E-value=52 Score=36.53 Aligned_cols=97 Identities=18% Similarity=0.274 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHhhCCCcEEEEEeecCCcc---ccccccCCccccCCCCCCCCCCcHHHHHHHHHHHH-HcCCeEEeccC
Q psy13692 178 PIKAIKKQLDIMSYNKLNVLHWHLVDDQSF---PYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYAR-LRGIRVIPEID 253 (592)
Q Consensus 178 ~v~~ik~~Id~Ma~~KlN~lHwHltDdqsf---p~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~-~rGI~VIPEID 253 (592)
|.+...+.++..+..++|.+|+----.-|- +|.+...=++. ..-+.+..-++.++++++|.-++ ++||-.|-.|
T Consensus 20 ~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~-~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~Dv- 97 (423)
T PF14701_consen 20 PFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFD-PDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDV- 97 (423)
T ss_pred CHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcC-hhhcCCCccccHHHHHHHHHHHHHHcCceEEEEE-
Confidence 467888999999999999998741110000 11111000000 00011224578899999999985 8999999998
Q ss_pred CCCccc---cccccCCCccccCCCcc
Q psy13692 254 TPGHTD---SMEPGMPQIHCHCPHRV 276 (592)
Q Consensus 254 ~PGH~~---a~~~~~P~l~~~c~~~~ 276 (592)
+.-|++ .|+..|||-...|.+.|
T Consensus 98 V~NHtA~nS~Wl~eHPEagYN~~nsP 123 (423)
T PF14701_consen 98 VLNHTANNSPWLREHPEAGYNLENSP 123 (423)
T ss_pred eeccCcCCChHHHhCcccccCCCCCc
Confidence 577876 59999999765444333
No 67
>KOG0470|consensus
Probab=64.90 E-value=7.5 Score=45.34 Aligned_cols=116 Identities=16% Similarity=0.166 Sum_probs=70.3
Q ss_pred HHHHHHHHhhCCCcEEEEEeecCC-----ccccccccCCccccCCCCCCCCCCcHH------HHHHHHHHHHHcCCeEEe
Q psy13692 182 IKKQLDIMSYNKLNVLHWHLVDDQ-----SFPYESKKFPSLSLKGAFGPDAIYTEK------MIKNVIEYARLRGIRVIP 250 (592)
Q Consensus 182 ik~~Id~Ma~~KlN~lHwHltDdq-----sfp~e~~~~P~Lt~~Gay~p~~~YT~e------di~eIv~YA~~rGI~VIP 250 (592)
..+.|..+-...+|.+|+-.+=.. +|.|....| .+..+.|. |.+ |+|++|+-|..+||.||-
T Consensus 257 teKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nF--FapssrYg-----t~~s~~ri~efK~lVd~aHs~GI~VlL 329 (757)
T KOG0470|consen 257 TEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNF--FAPSSRYG-----TPESPCRINEFKELVDKAHSLGIEVLL 329 (757)
T ss_pred hhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEe--eccccccc-----CCCcccchHHHHHHHHHHhhCCcEEeh
Confidence 455677788889999998655443 455444322 22223332 666 999999999999999999
Q ss_pred ccCCCCccccccccCCCcc-----ccCCC--ccccc---ccccCCCCCChhHHHHHHHHHHHHhhh
Q psy13692 251 EIDTPGHTDSMEPGMPQIH-----CHCPH--RVEGK---TFVGPLDPTKNVTLDFVRDLFTELGQR 306 (592)
Q Consensus 251 EID~PGH~~a~~~~~P~l~-----~~c~~--~~~g~---~~~~~lnp~~~~ty~fl~~ll~Ev~~l 306 (592)
+| +-.|+.. ....|.-+ ..||= .+.|. .+-..+|-..+.+.+||-+=+.=+..-
T Consensus 330 DV-V~sHaa~-n~~d~l~~fdGid~~~Yf~~~~r~~h~~~~~r~fn~~~~~V~rflL~nLr~WVtE 393 (757)
T KOG0470|consen 330 DV-VHSHAAK-NSKDGLNMFDGIDNSVYFHSGPRGYHNSWCSRLFNYNHPVVLRFLLSNLRWWVTE 393 (757)
T ss_pred hh-hhhhccc-CcCCcchhccCcCCceEEEeCCcccccccccccccCCCHHHHHHHHHHHHHHHHh
Confidence 99 6788865 22222111 01211 11111 012357777888888877766555553
No 68
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=63.99 E-value=31 Score=36.52 Aligned_cols=107 Identities=9% Similarity=0.076 Sum_probs=64.0
Q ss_pred CCCCHHHHHHHHHHHhhCCCcEEEEEeecC----C---ccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCe
Q psy13692 175 HYLPIKAIKKQLDIMSYNKLNVLHWHLVDD----Q---SFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIR 247 (592)
Q Consensus 175 ~f~~v~~ik~~Id~Ma~~KlN~lHwHltDd----q---sfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~ 247 (592)
.|.+.+.++++++.+..+++.+=.+++-.+ . .|-+..+.|| +.+++++..+++||+
T Consensus 19 ~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~~~~~~~f~~d~~~FP-----------------dp~~mi~~L~~~G~k 81 (319)
T cd06591 19 RYKTQEELLDVAKEYRKRGIPLDVIVQDWFYWPKQGWGEWKFDPERFP-----------------DPKAMVRELHEMNAE 81 (319)
T ss_pred cCCCHHHHHHHHHHHHHhCCCccEEEEechhhcCCCceeEEEChhhCC-----------------CHHHHHHHHHHCCCE
Confidence 456899999999999999888666655322 1 1222222222 458899999999999
Q ss_pred EEeccCCCCccccccccCCCcc-----ccCCC-c-----ccccccccCCCCCChhHHHHHHHHHHH
Q psy13692 248 VIPEIDTPGHTDSMEPGMPQIH-----CHCPH-R-----VEGKTFVGPLDPTKNVTLDFVRDLFTE 302 (592)
Q Consensus 248 VIPEID~PGH~~a~~~~~P~l~-----~~c~~-~-----~~g~~~~~~lnp~~~~ty~fl~~ll~E 302 (592)
||+-++ |+=.. -...+.+.. ....+ . ..|. .+.+|.+||++.+...+.+++
T Consensus 82 v~~~i~-P~v~~-~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~--~~~~Dftnp~a~~w~~~~~~~ 143 (319)
T cd06591 82 LMISIW-PTFGP-ETENYKEMDEKGYLIKTDRGPRVTMQFGGN--TRFYDATNPEAREYYWKQLKK 143 (319)
T ss_pred EEEEec-CCcCC-CChhHHHHHHCCEEEEcCCCCeeeeeCCCC--ccccCCCCHHHHHHHHHHHHH
Confidence 998776 54110 000011111 11100 0 0122 357999999999976665554
No 69
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=63.24 E-value=23 Score=38.54 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=21.2
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VI 249 (592)
..||.+++++|++.|+++++-||
T Consensus 185 ~~~s~~~~~~l~~~a~~~~~~ii 207 (409)
T PLN00143 185 SVYSYEHLNKIAETARKLGILVI 207 (409)
T ss_pred CccCHHHHHHHHHHHHHcCCeEE
Confidence 57999999999999999998877
No 70
>PRK07681 aspartate aminotransferase; Provisional
Probab=62.71 E-value=27 Score=37.81 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=21.2
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VI 249 (592)
..||++++++|++.|+++|+-||
T Consensus 181 ~~~s~~~~~~i~~~a~~~~~~iI 203 (399)
T PRK07681 181 AMAHEDFFKEVIAFAKKHNIIVV 203 (399)
T ss_pred cCCCHHHHHHHHHHHHHcCeEEE
Confidence 57999999999999999999777
No 71
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=61.36 E-value=23 Score=41.26 Aligned_cols=70 Identities=20% Similarity=0.260 Sum_probs=45.9
Q ss_pred HHHHHHHhhCCCcEEEEEeecCC----ccccccccCCccccCCCCCC-----C-CCCcHHHHHHHHHHHHHcCCeEEecc
Q psy13692 183 KKQLDIMSYNKLNVLHWHLVDDQ----SFPYESKKFPSLSLKGAFGP-----D-AIYTEKMIKNVIEYARLRGIRVIPEI 252 (592)
Q Consensus 183 k~~Id~Ma~~KlN~lHwHltDdq----sfp~e~~~~P~Lt~~Gay~p-----~-~~YT~edi~eIv~YA~~rGI~VIPEI 252 (592)
.++-|.+....++.+|+--.=.. +|.+ -|.. .|.|.- . .+=|.+|++++++-|.+|||+||-.+
T Consensus 77 ~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~----tP~~--D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~Dl 150 (688)
T TIGR02455 77 DALWKALSEIGVQGIHNGPIKLSGGIRGREF----TPSI--DGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDI 150 (688)
T ss_pred hHHHHHHHHhCCCEEEeCcceecccccccCC----CCCC--CCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 46778888899999887432110 0000 0100 122211 1 23399999999999999999999998
Q ss_pred CCCCccc
Q psy13692 253 DTPGHTD 259 (592)
Q Consensus 253 D~PGH~~ 259 (592)
+|.|++
T Consensus 151 -VpnHTs 156 (688)
T TIGR02455 151 -IPAHTG 156 (688)
T ss_pred -CCCCCC
Confidence 799987
No 72
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=61.34 E-value=21 Score=44.99 Aligned_cols=82 Identities=15% Similarity=0.280 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCC--------CCCC----CcHHHHHHHHHHHHHc-
Q psy13692 178 PIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFG--------PDAI----YTEKMIKNVIEYARLR- 244 (592)
Q Consensus 178 ~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~--------p~~~----YT~edi~eIv~YA~~r- 244 (592)
+.+.+.+.|+.++..++|++|+- |++-.+- ..-.|+ | .+ -+.+|++++|+-|.++
T Consensus 130 ~~~~w~~~L~~ik~lGyN~Ihft-------PI~~~G~----SnS~Ysi~Dyl~idP-~~~~~~~~~~d~~~lV~~~h~~~ 197 (1464)
T TIGR01531 130 PLSEWEPRLRVAKEKGYNMIHFT-------PLQELGG----SNSCYSLYDQLQLNQ-HFKSQKDGKNDVQALVEKLHRDW 197 (1464)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeC-------CCccCCC----CCCCccccchhhcCh-hhcccCCcHHHHHHHHHHHHHhc
Confidence 46888999999999999999984 3331110 011121 2 22 4889999999999996
Q ss_pred CCeEEeccCCCCccc---cccccCCCccccC
Q psy13692 245 GIRVIPEIDTPGHTD---SMEPGMPQIHCHC 272 (592)
Q Consensus 245 GI~VIPEID~PGH~~---a~~~~~P~l~~~c 272 (592)
|+.+|-.+ +.-|++ .|+..|||-...+
T Consensus 198 Gm~~ilDv-V~NHTa~ds~Wl~eHPEa~Yn~ 227 (1464)
T TIGR01531 198 NVLSITDI-VFNHTANNSPWLLEHPEAAYNC 227 (1464)
T ss_pred CCEEEEEe-eecccccCCHHHHhChHhhcCC
Confidence 99999999 789987 4888899865444
No 73
>PLN00196 alpha-amylase; Provisional
Probab=60.98 E-value=32 Score=38.23 Aligned_cols=69 Identities=22% Similarity=0.303 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCC--------CCCcHHHHHHHHHHHHHcCCeEEe
Q psy13692 179 IKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPD--------AIYTEKMIKNVIEYARLRGIRVIP 250 (592)
Q Consensus 179 v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~--------~~YT~edi~eIv~YA~~rGI~VIP 250 (592)
...|.+-|+.++...++.+.+=- ++++. +..| |.+. .+=|.+|++++|+-|+++||+||-
T Consensus 43 ~~~i~~kldyL~~LGvtaIWL~P------~~~s~-----s~hG-Y~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVil 110 (428)
T PLN00196 43 YNFLMGKVDDIAAAGITHVWLPP------PSHSV-----SEQG-YMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIA 110 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCC------CCCCC-----CCCC-CCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEE
Confidence 45678889999999999887632 11111 1111 2111 223889999999999999999999
Q ss_pred ccCCCCcccc
Q psy13692 251 EIDTPGHTDS 260 (592)
Q Consensus 251 EID~PGH~~a 260 (592)
.+ ++-|+++
T Consensus 111 Dv-V~NH~~~ 119 (428)
T PLN00196 111 DI-VINHRTA 119 (428)
T ss_pred EE-CccCccc
Confidence 99 7899874
No 74
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=60.37 E-value=28 Score=37.89 Aligned_cols=23 Identities=13% Similarity=0.346 Sum_probs=20.8
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VI 249 (592)
..+|.+++++|++.|+++|+-||
T Consensus 192 ~~~s~~~~~~l~~~a~~~~~~ii 214 (412)
T PTZ00433 192 SNFSRKHVEDIIRLCEELRLPLI 214 (412)
T ss_pred cccCHHHHHHHHHHHHHcCCeEE
Confidence 46899999999999999998776
No 75
>PTZ00377 alanine aminotransferase; Provisional
Probab=59.87 E-value=20 Score=40.13 Aligned_cols=23 Identities=17% Similarity=0.543 Sum_probs=21.1
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VI 249 (592)
..||.+++++|++.|+++++-||
T Consensus 233 ~~~s~e~~~~i~~~a~~~~~~iI 255 (481)
T PTZ00377 233 QVLTRDVMEEIIKFCYEKGIVLM 255 (481)
T ss_pred cCCCHHHHHHHHHHHHHCCCEEE
Confidence 57999999999999999999776
No 76
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=59.20 E-value=28 Score=44.93 Aligned_cols=76 Identities=12% Similarity=0.177 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHHHHhhCCCcEEEEEeecC----CccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEec
Q psy13692 176 YLPIKAIKKQLDIMSYNKLNVLHWHLVDD----QSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVIPE 251 (592)
Q Consensus 176 f~~v~~ik~~Id~Ma~~KlN~lHwHltDd----qsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VIPE 251 (592)
=++.+.+.+.|+.++.+++|.+.+=-.-. ..+.|.+..|-.+. | .+=|.++++++++-|+++||.||-.
T Consensus 754 ~~tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~id------p-~lG~~edf~~Lv~~ah~~Gi~vilD 826 (1693)
T PRK14507 754 DFTFADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQIN------P-EIGGEEGFERFCAALKAHGLGQLLD 826 (1693)
T ss_pred CCCHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccC------c-ccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 46788899999999999999666521100 00111111111111 0 2228999999999999999999999
Q ss_pred cCCCCccc
Q psy13692 252 IDTPGHTD 259 (592)
Q Consensus 252 ID~PGH~~ 259 (592)
| +|.|++
T Consensus 827 i-V~NH~~ 833 (1693)
T PRK14507 827 I-VPNHMG 833 (1693)
T ss_pred e-cccccC
Confidence 9 799997
No 77
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=58.38 E-value=37 Score=36.67 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=21.7
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEe
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVIP 250 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VIP 250 (592)
..+|.+++++|++.|+++++-||=
T Consensus 187 ~~~s~~~~~~l~~~a~~~~~~ii~ 210 (396)
T PRK09257 187 ADLTPEQWDELAELLKERGLIPFL 210 (396)
T ss_pred CCCCHHHHHHHHHHHHhCCcEEEE
Confidence 579999999999999999998873
No 78
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=57.66 E-value=73 Score=37.48 Aligned_cols=131 Identities=18% Similarity=0.223 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHhhCCCcEEEE-EeecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEeccC-CC
Q psy13692 178 PIKAIKKQLDIMSYNKLNVLHW-HLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVIPEID-TP 255 (592)
Q Consensus 178 ~v~~ik~~Id~Ma~~KlN~lHw-HltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VIPEID-~P 255 (592)
|-+.+++-|+.|-..++|++-. .+ +|-.- -|+ .|.|. +|.-|.. .++-|.+-||.||---. +.
T Consensus 28 p~~~w~ddl~~mk~~G~N~V~ig~f----aW~~~---eP~---eG~fd----f~~~D~~-~l~~a~~~Gl~vil~t~P~g 92 (673)
T COG1874 28 PRETWMDDLRKMKALGLNTVRIGYF----AWNLH---EPE---EGKFD----FTWLDEI-FLERAYKAGLYVILRTGPTG 92 (673)
T ss_pred CHHHHHHHHHHHHHhCCCeeEeeeE----Eeecc---Ccc---ccccC----cccchHH-HHHHHHhcCceEEEecCCCC
Confidence 5689999999999999998876 44 23221 122 25554 4544444 69999999999997663 45
Q ss_pred CccccccccCCCccccCCC-cccccccccCCCCCChhHHHHHHHHHHHHhhh-cCC----CeEEecCCcccc-ccc
Q psy13692 256 GHTDSMEPGMPQIHCHCPH-RVEGKTFVGPLDPTKNVTLDFVRDLFTELGQR-FPE----SYVHLGGDEVDF-FCW 324 (592)
Q Consensus 256 GH~~a~~~~~P~l~~~c~~-~~~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~l-Fp~----~~~HiGGDEv~~-~~w 324 (592)
++.......||+.+....+ ..........+||.++--.+.+..|+..+.+. ... --+|+-- |+.- .||
T Consensus 93 ~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dn-eY~~~~~~ 167 (673)
T COG1874 93 APPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDN-EYGGHPCY 167 (673)
T ss_pred CCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccC-ccCCcccc
Confidence 5555555679998754322 11111114568999886667888888888776 321 3456543 5543 455
No 79
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=57.22 E-value=11 Score=38.01 Aligned_cols=76 Identities=7% Similarity=-0.093 Sum_probs=49.7
Q ss_pred CcccceecCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHH
Q psy13692 164 PHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARL 243 (592)
Q Consensus 164 ~~RGlmLD~sR~f~~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~ 243 (592)
..||++++..+..-..+.+++.|+.++..+..++..+. +..-......+. + -...+.++++++||++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~~~i~~~~----g~~~~~~~~~~~-----~----~~~~~~l~~l~~~A~~ 134 (254)
T TIGR03234 68 GERGIACLPGREEEFREGVALAIAYARALGCPQVNCLA----GKRPAGVSPEEA-----R----ATLVENLRYAADALDR 134 (254)
T ss_pred CCCccccCCccHHHHHHHHHHHHHHHHHhCCCEEEECc----CCCCCCCCHHHH-----H----HHHHHHHHHHHHHHHh
Confidence 35676666655433368899999999999999887643 111000000000 0 1234679999999999
Q ss_pred cCCeEEecc
Q psy13692 244 RGIRVIPEI 252 (592)
Q Consensus 244 rGI~VIPEI 252 (592)
+||++.-|-
T Consensus 135 ~gi~l~lE~ 143 (254)
T TIGR03234 135 IGLTLLIEP 143 (254)
T ss_pred cCCEEEEEE
Confidence 999999995
No 80
>PRK06348 aspartate aminotransferase; Provisional
Probab=56.83 E-value=32 Score=37.02 Aligned_cols=23 Identities=13% Similarity=0.346 Sum_probs=21.0
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VI 249 (592)
..+|.+++++|++.|+++|+-||
T Consensus 177 ~~~s~~~~~~l~~~a~~~~~~ii 199 (384)
T PRK06348 177 AVFSKETLEEIAKIAIEYDLFII 199 (384)
T ss_pred cCCCHHHHHHHHHHHHHCCeEEE
Confidence 56899999999999999998776
No 81
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=56.07 E-value=17 Score=40.66 Aligned_cols=23 Identities=13% Similarity=0.345 Sum_probs=21.4
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VI 249 (592)
..|+.+++++|++.|+++++-||
T Consensus 206 ~~~s~e~l~~ll~~a~~~~~~iI 228 (468)
T PLN02450 206 TTTTRTELNLLVDFITAKNIHLI 228 (468)
T ss_pred cccCHHHHHHHHHHHHHCCcEEE
Confidence 57999999999999999999887
No 82
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=55.98 E-value=1e+02 Score=31.86 Aligned_cols=151 Identities=19% Similarity=0.320 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHcCCeEEeccCCC-Cccc---cccccCCCccccCCCcccccccccCCCCCChhHHHHHHHHHHHHhhh
Q psy13692 231 EKMIKNVIEYARLRGIRVIPEIDTP-GHTD---SMEPGMPQIHCHCPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQR 306 (592)
Q Consensus 231 ~edi~eIv~YA~~rGI~VIPEID~P-GH~~---a~~~~~P~l~~~c~~~~~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~l 306 (592)
.+|..++++-|++.||..+--+-+. .+.. ...+.||.+...+ | ..|.+ ..+.. ++-++++.++
T Consensus 16 ~~d~~~vi~~a~~~gv~~~~~~g~~~~~~~~~~~la~~y~~v~~~~-----G---~HP~~-~~~~~----~~~~~~l~~~ 82 (256)
T COG0084 16 DEDRDEVIARAREAGVKKMVVVGTDLEDFKRALELAEKYPNVYAAV-----G---VHPLD-ADEHS----EEDLEELEQL 82 (256)
T ss_pred cCCHHHHHHHHHHcCCcEEEEeecCHHHHHHHHHHHHhCCCeEEEE-----e---eCCCc-ccccc----HHHHHHHHHH
Confidence 4567789999999998776655332 2222 2334567543221 2 22333 11211 2223333333
Q ss_pred c--CCCeEEecCCccccc-cccCCHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhcccee-----EeccccccccccCC
Q psy13692 307 F--PESYVHLGGDEVDFF-CWEQNPEIKAFMSTRQWDGPQLQSYYMQYLLKAIKTIRKRSV-----VWEEVFQDWKNVNG 378 (592)
Q Consensus 307 F--p~~~~HiGGDEv~~~-~w~~~p~~~~~m~~~g~~~~~L~~~f~~~v~~~l~~~Gk~~i-----~W~D~l~~~~~~~g 378 (592)
. ..+.+=|| |+-++ .|...+ ..+.|..++.+-.+++++.++..+ .|+|++.--.
T Consensus 83 ~~~~~~vvaIG--EiGLDy~~~~~~------------~~~~Q~~~F~~ql~lA~~~~lPviIH~R~A~~d~~~iL~---- 144 (256)
T COG0084 83 AEHHPKVVAIG--EIGLDYYWDKEP------------DKERQEEVFEAQLELAKELNLPVIIHTRDAHEDTLEILK---- 144 (256)
T ss_pred HhcCCCeEEEE--ecccCccccccc------------cHHHHHHHHHHHHHHHHHcCCCEEEEccccHHHHHHHHH----
Confidence 3 34666666 55442 333332 123455666677788999887665 5666654311
Q ss_pred ccccCCCCCCeEEEecCCCCCCChHHHHHHHHHcCCeEEecC
Q psy13692 379 DAQAMSMDKDTIVQVWRGGGLEGASAAVKRVVSAGYKVINSI 420 (592)
Q Consensus 379 ~~~~~~Lpkd~iv~~W~~~~~~~~~~~~~~~~~~Gy~vI~s~ 420 (592)
....+...|++.+.++ ...++++++.||-+=+|.
T Consensus 145 ---~~~~~~~gi~HcFsGs-----~e~a~~~~d~G~yisisG 178 (256)
T COG0084 145 ---EEGAPVGGVLHCFSGS-----AEEARKLLDLGFYISISG 178 (256)
T ss_pred ---hcCCCCCEEEEccCCC-----HHHHHHHHHcCeEEEECc
Confidence 1122567788877766 467889999997666554
No 83
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=55.13 E-value=26 Score=39.61 Aligned_cols=23 Identities=9% Similarity=0.459 Sum_probs=21.2
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VI 249 (592)
..||.+++++|++.|++++|-||
T Consensus 214 ~~~s~e~l~~L~~~a~~~~i~lI 236 (496)
T PLN02376 214 TMLDKDTLTNLVRFVTRKNIHLV 236 (496)
T ss_pred ccCCHHHHHHHHHHHHHcCCEEE
Confidence 57999999999999999999766
No 84
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=53.67 E-value=29 Score=39.88 Aligned_cols=155 Identities=16% Similarity=0.229 Sum_probs=82.1
Q ss_pred eEE-ecCCCCCcccceecCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccc-c-CCCCCC--CCCC
Q psy13692 155 QTI-EDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLS-L-KGAFGP--DAIY 229 (592)
Q Consensus 155 ~~I-~D~P~f~~RGlmLD~sR~f~~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt-~-~Gay~p--~~~Y 229 (592)
+.+ .|+=+||--|++=|..-. .+.+..++.|+.|+.+++|.++.+ |..|+-+.+ +|.-. . ...|.. ...-
T Consensus 93 iDVSsdW~~fPRYGfls~f~~~-~~~~~~~~~i~~L~~yHIN~~QFY---DW~~rH~~P-l~~~~~~~~~~w~D~~~r~i 167 (559)
T PF13199_consen 93 IDVSSDWTRFPRYGFLSDFDKS-KSAEDIEAEIDQLNRYHINGLQFY---DWMYRHHKP-LPGTNGQPDQTWTDWANRQI 167 (559)
T ss_dssp EEE-SSTTSS--EEEE---GGG-GGHHHHHHHHHHHHHTT--EEEET---S--SBTTB--S-SSS-EEE-TT-TTT--EE
T ss_pred EEecCCcccCCcceEecCCCCc-CCchhHHHHHHHHHhhCcCeEEEE---eeccccCCc-CCCCCCchhhhhhhhcCCEe
Confidence 344 588889989998663322 345899999999999999999864 333443322 11110 0 011210 1345
Q ss_pred cHHHHHHHHHHHHHcCCeEEeccCCCCccccccc--cCCCcc--c-cCC-C-----ccccc-ccccCCCCCChhHHHHHH
Q psy13692 230 TEKMIKNVIEYARLRGIRVIPEIDTPGHTDSMEP--GMPQIH--C-HCP-H-----RVEGK-TFVGPLDPTKNVTLDFVR 297 (592)
Q Consensus 230 T~edi~eIv~YA~~rGI~VIPEID~PGH~~a~~~--~~P~l~--~-~c~-~-----~~~g~-~~~~~lnp~~~~ty~fl~ 297 (592)
+.+-||+.|+-|+++|+..++=.=+-|=...... ..|+.. . .+. . -+.+. .....+||.|+.=.+++-
T Consensus 168 ~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~~~~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~ 247 (559)
T PF13199_consen 168 STSTVKDYINAAHKYGMKAMAYNMIYAANNNYEEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYII 247 (559)
T ss_dssp EHHHHHHHHHHHHHTT-EEEEEEESSEEETT--S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCcceehhHhhhccccCcccccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHHHHHHH
Confidence 7788999999999999999987654443221111 011111 0 010 0 00000 002468999999888888
Q ss_pred HHHHHHhhhcCCCeEEe
Q psy13692 298 DLFTELGQRFPESYVHL 314 (592)
Q Consensus 298 ~ll~Ev~~lFp~~~~Hi 314 (592)
.=++++.+.|.-.=|||
T Consensus 248 ~q~~~~~~~~gFDG~hl 264 (559)
T PF13199_consen 248 NQMNKAIQNFGFDGWHL 264 (559)
T ss_dssp HHHHHHHHHHT--EEEE
T ss_pred HHHHHHHHccCCceEee
Confidence 88888888888666776
No 85
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=52.47 E-value=57 Score=34.90 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=21.0
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VI 249 (592)
..|+.+++++|++.|+++|+-||
T Consensus 181 ~~~~~~~~~~l~~~~~~~~~~ii 203 (385)
T PRK09276 181 AVADLEFFEEVVDFAKKYDIIVC 203 (385)
T ss_pred CCCCHHHHHHHHHHHHHCCcEEE
Confidence 56999999999999999999776
No 86
>PRK08636 aspartate aminotransferase; Provisional
Probab=52.22 E-value=56 Score=35.37 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=21.4
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VI 249 (592)
..||.+++++|++.|+++++-||
T Consensus 190 ~~~s~~~~~~l~~~a~~~~~~II 212 (403)
T PRK08636 190 ATVEKSFYERLVALAKKERFYII 212 (403)
T ss_pred ccCCHHHHHHHHHHHHHcCcEEE
Confidence 57999999999999999999887
No 87
>PRK06290 aspartate aminotransferase; Provisional
Probab=52.12 E-value=55 Score=35.82 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=20.9
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VI 249 (592)
..||.+++++|++.|+++|+-||
T Consensus 194 ~v~s~e~l~~l~~la~~~~~~iI 216 (410)
T PRK06290 194 AVATKEFYEEVVDFAKENNIIVV 216 (410)
T ss_pred cCCCHHHHHHHHHHHHHcCeEEE
Confidence 67999999999999999998666
No 88
>KOG3625|consensus
Probab=51.68 E-value=1.2e+02 Score=36.94 Aligned_cols=161 Identities=16% Similarity=0.231 Sum_probs=90.9
Q ss_pred CHHHHHHHHHHHhhCCCcEEEEEeecCCcc---cc----ccccCCccccCCCCCCCCCCcHHHHHHHHHHHH-HcCCeEE
Q psy13692 178 PIKAIKKQLDIMSYNKLNVLHWHLVDDQSF---PY----ESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYAR-LRGIRVI 249 (592)
Q Consensus 178 ~v~~ik~~Id~Ma~~KlN~lHwHltDdqsf---p~----e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~-~rGI~VI 249 (592)
|++..+..+...+...+|+.|+-.--.-|- +| +.+--|.+ .++++-||.||++.||+-++ +.+|--|
T Consensus 140 pl~eWeprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~~~~-----~~~~~k~s~eDV~~lV~~l~rewnvlsi 214 (1521)
T KOG3625|consen 140 PLDEWEPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELNPDF-----SRPNRKYSFEDVGQLVEKLKREWNVLSI 214 (1521)
T ss_pred ChhhhhHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcChhh-----hccCCCCCHHHHHHHHHHHHhhcCeeee
Confidence 567788888999999999988752111100 00 00111111 13557899999999999985 6788777
Q ss_pred eccCCCCcccc---ccccCCCccccCCCcccccccccCCCCCChhHHHHHHHHHHHH-hhhcCCCeEEecCCcccc-ccc
Q psy13692 250 PEIDTPGHTDS---MEPGMPQIHCHCPHRVEGKTFVGPLDPTKNVTLDFVRDLFTEL-GQRFPESYVHLGGDEVDF-FCW 324 (592)
Q Consensus 250 PEID~PGH~~a---~~~~~P~l~~~c~~~~~g~~~~~~lnp~~~~ty~fl~~ll~Ev-~~lFp~~~~HiGGDEv~~-~~w 324 (592)
-.| +.-|+.. |+..|||-...|.+.|. |-| ++ +|+..+-+. +++-...|=|-|---+-. .|-
T Consensus 215 ~Dv-V~NHtAnns~WlleHPea~Yn~~~sPh-------Lrp----A~-~lD~~~~~f~~di~eg~~eh~GvP~vieni~h 281 (1521)
T KOG3625|consen 215 TDV-VYNHTANNSKWLLEHPEAAYNCVNSPH-------LRP----AW-VLDRALWRFSCDIAEGKYEHKGVPAVIENIHH 281 (1521)
T ss_pred ehh-hhhccccCCchhHhCchhhhcccCCcc-------cch----HH-HHHHHHHHhccccccCcccccCCchhhhhhHH
Confidence 777 5788863 88889997766654332 222 23 233333333 233345787877643321 110
Q ss_pred cCCHHHHHHHHhCCCChhhHHHHHHHHHHHHHHh
Q psy13692 325 EQNPEIKAFMSTRQWDGPQLQSYYMQYLLKAIKT 358 (592)
Q Consensus 325 ~~~p~~~~~m~~~g~~~~~L~~~f~~~v~~~l~~ 358 (592)
--+++.-+...=+.-.+|+.+|.-.+.+++.+
T Consensus 282 --l~ai~~~i~~~vl~kl~l~E~yqvdv~~~vn~ 313 (1521)
T KOG3625|consen 282 --LNAIRYIIWEDVLPKLKLWEFYQVDVNKAVNQ 313 (1521)
T ss_pred --HHHHHHHHHHHHhccccHHHHHHhhHHHHHHH
Confidence 11233333333223445666666666666554
No 89
>PLN02231 alanine transaminase
Probab=51.51 E-value=55 Score=37.42 Aligned_cols=24 Identities=13% Similarity=0.533 Sum_probs=21.8
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEe
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVIP 250 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VIP 250 (592)
..||.+++++|++.|+++|+-||-
T Consensus 286 ~vls~e~l~~Iv~~a~~~~l~lI~ 309 (534)
T PLN02231 286 QVLAEENQRDIVEFCKQEGLVLLA 309 (534)
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEE
Confidence 679999999999999999997773
No 90
>PLN02368 alanine transaminase
Probab=50.19 E-value=44 Score=36.70 Aligned_cols=24 Identities=4% Similarity=0.281 Sum_probs=21.9
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEe
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVIP 250 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VIP 250 (592)
..||++++++|++.|+++++-||-
T Consensus 225 ~v~s~e~l~~l~~~a~~~~~~II~ 248 (407)
T PLN02368 225 QCLSEANLREILKFCYQERLVLLG 248 (407)
T ss_pred ccCCHHHHHHHHHHHHHcCCEEEE
Confidence 579999999999999999998873
No 91
>PRK09265 aminotransferase AlaT; Validated
Probab=49.96 E-value=75 Score=34.36 Aligned_cols=23 Identities=22% Similarity=0.652 Sum_probs=20.9
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VI 249 (592)
..++.+++++|++.|+++|+-||
T Consensus 183 ~~~~~~~~~~i~~~a~~~~~~ii 205 (404)
T PRK09265 183 AVYSKELLEEIVEIARQHNLIIF 205 (404)
T ss_pred cCCCHHHHHHHHHHHHHCCCEEE
Confidence 46899999999999999999776
No 92
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=49.83 E-value=51 Score=33.02 Aligned_cols=68 Identities=16% Similarity=0.204 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 178 PIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 178 ~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VI 249 (592)
+.+.|+++.+.++.+... ++|+.--+ ++-..+|..|...-.+......++++++++.+.++++|+.++
T Consensus 143 ~~e~i~~ia~~l~~l~~~--~~~llpyh--~~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~ 210 (213)
T PRK10076 143 SRENMQQALDVLIPLGIK--QIHLLPFH--QYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVT 210 (213)
T ss_pred CHHHHHHHHHHHHHcCCc--eEEEecCC--ccchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEE
Confidence 578899999999876444 66664433 222233333321101111144699999999999999999986
No 93
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=49.28 E-value=45 Score=35.52 Aligned_cols=69 Identities=17% Similarity=0.295 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCCCCCc-HHHHHHHHHHHHHcCCeEEeccCCC
Q psy13692 177 LPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYT-EKMIKNVIEYARLRGIRVIPEIDTP 255 (592)
Q Consensus 177 ~~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT-~edi~eIv~YA~~rGI~VIPEID~P 255 (592)
+|.+...+.|+.|....+|++..++ -|.+.-+ . .|.|. +| ..|++.+++.|+++|+-||--+---
T Consensus 21 ~p~~~W~~~l~k~ka~G~n~v~~yv----~W~~he~-----~-~g~~d----f~g~~dl~~f~~~a~~~gl~vilrpGpy 86 (319)
T PF01301_consen 21 IPPEYWRDRLQKMKAAGLNTVSTYV----PWNLHEP-----E-EGQFD----FTGNRDLDRFLDLAQENGLYVILRPGPY 86 (319)
T ss_dssp S-GGGHHHHHHHHHHTT-SEEEEE------HHHHSS-----B-TTB-------SGGG-HHHHHHHHHHTT-EEEEEEES-
T ss_pred CChhHHHHHHHHHHhCCcceEEEec----cccccCC-----C-CCccc----ccchhhHHHHHHHHHHcCcEEEecccce
Confidence 3678899999999999999999987 3333221 1 24443 23 4699999999999999999765444
Q ss_pred Cccc
Q psy13692 256 GHTD 259 (592)
Q Consensus 256 GH~~ 259 (592)
-|++
T Consensus 87 i~aE 90 (319)
T PF01301_consen 87 ICAE 90 (319)
T ss_dssp --TT
T ss_pred eccc
Confidence 4554
No 94
>PLN02656 tyrosine transaminase
Probab=48.71 E-value=60 Score=35.31 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=21.1
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VI 249 (592)
..||.+++++|++.|+++|+-||
T Consensus 184 ~~~s~~~~~~i~~~a~~~~~~ii 206 (409)
T PLN02656 184 NVYSYQHLKKIAETAEKLKILVI 206 (409)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEE
Confidence 56899999999999999998777
No 95
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=48.67 E-value=48 Score=35.61 Aligned_cols=23 Identities=9% Similarity=0.316 Sum_probs=21.1
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VI 249 (592)
..||.+++++|++.|+++++-||
T Consensus 180 ~~~s~~~~~~l~~~a~~~~~~ii 202 (388)
T PRK07366 180 AIAPLSFFQEAVAFCQQHDLVLV 202 (388)
T ss_pred ccCCHHHHHHHHHHHHHcCeEEE
Confidence 57999999999999999998776
No 96
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=48.52 E-value=80 Score=33.75 Aligned_cols=111 Identities=15% Similarity=0.105 Sum_probs=69.6
Q ss_pred CCCCHHHHHHHHHHHhhCCCcEEEEEeecC-----CccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 175 HYLPIKAIKKQLDIMSYNKLNVLHWHLVDD-----QSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 175 ~f~~v~~ik~~Id~Ma~~KlN~lHwHltDd-----qsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VI 249 (592)
.|.+-+.++++++.+..+++.+=.+++-++ ..|-+..+.|| |.+.+++.-+++||+|+
T Consensus 19 ~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~~~~~f~~d~~~FP-----------------dp~~mi~~L~~~G~k~~ 81 (339)
T cd06603 19 NYKDQEDVKEVDAGFDEHDIPYDVIWLDIEHTDGKRYFTWDKKKFP-----------------DPEKMQEKLASKGRKLV 81 (339)
T ss_pred CCCCHHHHHHHHHHHHHcCCCceEEEEChHHhCCCCceEeCcccCC-----------------CHHHHHHHHHHCCCEEE
Confidence 456789999999999999998777766322 11212222222 55889999999999999
Q ss_pred eccCCCCcccc-ccccCCCcc-----ccCCC-cc------cccccccCCCCCChhHHHHHHHHHHHHhh
Q psy13692 250 PEIDTPGHTDS-MEPGMPQIH-----CHCPH-RV------EGKTFVGPLDPTKNVTLDFVRDLFTELGQ 305 (592)
Q Consensus 250 PEID~PGH~~a-~~~~~P~l~-----~~c~~-~~------~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~ 305 (592)
+-++ |+-... -...|.+.. ..-.+ .+ .|. ...+|-+||++.+...+.++++..
T Consensus 82 ~~~~-P~v~~~~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~--~~~~Dftnp~a~~ww~~~~~~~~~ 147 (339)
T cd06603 82 TIVD-PHIKRDDGYYVYKEAKDKGYLVKNSDGGDFEGWCWPGS--SSWPDFLNPEVRDWWASLFSYDKY 147 (339)
T ss_pred EEec-CceecCCCCHHHHHHHHCCeEEECCCCCEEEEEECCCC--cCCccCCChhHHHHHHHHHHHHhh
Confidence 9987 443211 000011111 11000 00 122 357999999999999999998864
No 97
>PRK09082 methionine aminotransferase; Validated
Probab=48.01 E-value=62 Score=34.76 Aligned_cols=23 Identities=9% Similarity=0.219 Sum_probs=21.2
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VI 249 (592)
..||.+++++|++.|++++|-||
T Consensus 178 ~~~~~~~~~~i~~~a~~~~i~li 200 (386)
T PRK09082 178 TVWSAADMRALWQLIAGTDIYVL 200 (386)
T ss_pred cCCCHHHHHHHHHHHHHCCEEEE
Confidence 46899999999999999999888
No 98
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=47.86 E-value=16 Score=34.89 Aligned_cols=64 Identities=17% Similarity=0.179 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEeccC
Q psy13692 179 IKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVIPEID 253 (592)
Q Consensus 179 v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VIPEID 253 (592)
++.+++.|+.++..+...+.+|... |+. .+....... .-...+-+++|.++|+++||+|..|--
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~---~~~----~~~~~~~~~----~~~~~~~l~~l~~~a~~~gv~i~lE~~ 133 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGR---YPS----GPEDDTEEN----WERLAENLRELAEIAEEYGVRIALENH 133 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTT---ESS----STTSSHHHH----HHHHHHHHHHHHHHHHHHTSEEEEE-S
T ss_pred HHHHHHHHHHHHHhCCCceeecCcc---ccc----ccCCCHHHH----HHHHHHHHHHHHhhhhhhcceEEEecc
Confidence 7899999999999999999999642 100 001100000 113556799999999999999999953
No 99
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=47.19 E-value=61 Score=34.93 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=21.3
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VI 249 (592)
..||.+++++|++.|+++++-||
T Consensus 181 ~~~s~~~~~~l~~~a~~~~~~ii 203 (396)
T PRK09147 181 AVLPLDDWKKLFALSDRYGFVIA 203 (396)
T ss_pred ccCCHHHHHHHHHHHHHcCeEEE
Confidence 57999999999999999999887
No 100
>PRK07337 aminotransferase; Validated
Probab=46.89 E-value=70 Score=34.33 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=21.7
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEec
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVIPE 251 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VIPE 251 (592)
..+|.+|+++|++.|+++|+-||-+
T Consensus 178 ~~~~~~~~~~i~~~a~~~~~~ii~D 202 (388)
T PRK07337 178 TSIAPDELRRIVEAVRARGGFTIVD 202 (388)
T ss_pred cCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 5689999999999999999977743
No 101
>PRK08068 transaminase; Reviewed
Probab=46.14 E-value=56 Score=35.13 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=21.2
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VI 249 (592)
..|+.+++++|++.|+++++-||
T Consensus 182 ~~~s~~~~~~l~~la~~~~~~ii 204 (389)
T PRK08068 182 AVATKAFFEETVAFAKKHNIGVV 204 (389)
T ss_pred CcCCHHHHHHHHHHHHHcCeEEE
Confidence 57999999999999999999777
No 102
>PRK09505 malS alpha-amylase; Reviewed
Probab=45.39 E-value=78 Score=37.40 Aligned_cols=80 Identities=23% Similarity=0.387 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEeecCC--ccccc--cccCCccccCCCCCC------C-CCCcHHHHHHHHHHHHHcCCe
Q psy13692 179 IKAIKKQLDIMSYNKLNVLHWHLVDDQ--SFPYE--SKKFPSLSLKGAFGP------D-AIYTEKMIKNVIEYARLRGIR 247 (592)
Q Consensus 179 v~~ik~~Id~Ma~~KlN~lHwHltDdq--sfp~e--~~~~P~Lt~~Gay~p------~-~~YT~edi~eIv~YA~~rGI~ 247 (592)
+.-|.+-||.+...++|.+-+=-.=.+ ++.-. .-.+|.-+..| |.+ . .+=|.+|++++|+-|.+|||+
T Consensus 229 l~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhg-Y~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~ 307 (683)
T PRK09505 229 LRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHG-YYTLDWTKLDANMGTEADLRTLVDEAHQRGIR 307 (683)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCC-CCccccccCCCCCCCHHHHHHHHHHHHHCCCE
Confidence 788888899999999998876321100 00000 00011111111 111 0 222889999999999999999
Q ss_pred EEeccCCCCcccc
Q psy13692 248 VIPEIDTPGHTDS 260 (592)
Q Consensus 248 VIPEID~PGH~~a 260 (592)
||-.+ ++-|++.
T Consensus 308 VilD~-V~NH~~~ 319 (683)
T PRK09505 308 ILFDV-VMNHTGY 319 (683)
T ss_pred EEEEE-CcCCCcc
Confidence 99999 6899873
No 103
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=44.94 E-value=78 Score=33.19 Aligned_cols=58 Identities=14% Similarity=0.201 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccC-CCCCCCCCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 175 HYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLK-GAFGPDAIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 175 ~f~~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~-Gay~p~~~YT~edi~eIv~YA~~rGI~VI 249 (592)
..+.++.|++.|+....+.-+.=-+-|+. | ++. | +..||.+|+++|.++|+++||.|.
T Consensus 104 G~l~~~~l~~~~~~~~~h~~~~~~v~le~-----------t--~~~~G----G~~~s~~el~ai~~~a~~~gl~lh 162 (290)
T PF01212_consen 104 GKLTPEDLEAAIEEHGAHHPQPAVVSLEN-----------T--TELAG----GTVYSLEELRAISELAREHGLPLH 162 (290)
T ss_dssp TBB-HHHHHHHHHHHTGTSGGEEEEEEES-----------S--BTTTT----SB---HHHHHHHHHHHHHHT-EEE
T ss_pred CCCCHHHHHHHhhhccccCCCccEEEEEe-----------c--CcCCC----CeeCCHHHHHHHHHHHHhCceEEE
Confidence 66899999999998777333322222222 1 111 1 257999999999999999998774
No 104
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=44.54 E-value=1.6e+02 Score=31.18 Aligned_cols=111 Identities=23% Similarity=0.331 Sum_probs=67.8
Q ss_pred CCCCHHHHHHHHHHHhhCCCcEEEEEeecC-----CccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 175 HYLPIKAIKKQLDIMSYNKLNVLHWHLVDD-----QSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 175 ~f~~v~~ik~~Id~Ma~~KlN~lHwHltDd-----qsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VI 249 (592)
+|.+-+.++++++.+..+++-+=.+++-++ ..|.+..+.|| |.+++++..+++||+|+
T Consensus 19 ~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~~~~~f~~d~~~FP-----------------dp~~~i~~l~~~g~k~~ 81 (317)
T cd06600 19 SYYPQDKVVEVVDIMQKEGFPYDVVFLDIHYMDSYRLFTWDPYRFP-----------------EPKKLIDELHKRNVKLV 81 (317)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcceEEEChhhhCCCCceeechhcCC-----------------CHHHHHHHHHHCCCEEE
Confidence 456788999999999999998766666322 12222222222 45899999999999999
Q ss_pred eccCCCCccc-----cccccC-CCccccCCC-cc------cccccccCCCCCChhHHHHHHHHHHHHhh
Q psy13692 250 PEIDTPGHTD-----SMEPGM-PQIHCHCPH-RV------EGKTFVGPLDPTKNVTLDFVRDLFTELGQ 305 (592)
Q Consensus 250 PEID~PGH~~-----a~~~~~-P~l~~~c~~-~~------~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~ 305 (592)
+-++ |+-.. ....+. .++...-.+ .+ .|. ...+|-+||++.+...+.++++..
T Consensus 82 ~~~~-P~i~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~--~~~~Dftnp~a~~ww~~~~~~~~~ 147 (317)
T cd06600 82 TIVD-PGIRVDQNYSPFLSGMDKGKFCEIESGELFVGKMWPGT--TVYPDFTNPDTREWWAGLFSEWLN 147 (317)
T ss_pred EEee-ccccCCCCChHHHHHHHCCEEEECCCCCeEEEeecCCC--ccccCCCChHHHHHHHHHHHHHhh
Confidence 8775 43221 011110 011110000 00 111 235899999999999999988763
No 105
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=43.72 E-value=64 Score=34.09 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.8
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VI 249 (592)
..|+.+++++|++.|+++|+-||
T Consensus 151 ~~~~~~~~~~l~~~a~~~~~~ii 173 (350)
T TIGR03537 151 ATAPRSYLKETIAMCREHGIILC 173 (350)
T ss_pred cccCHHHHHHHHHHHHHcCcEEE
Confidence 46999999999999999998766
No 106
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=43.56 E-value=73 Score=31.96 Aligned_cols=119 Identities=13% Similarity=0.110 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHHhhCCCcEEEEEeecCCcccc---ccccC---CccccCCCCCCCCCCcHHHHH----------------
Q psy13692 178 PIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPY---ESKKF---PSLSLKGAFGPDAIYTEKMIK---------------- 235 (592)
Q Consensus 178 ~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~---e~~~~---P~Lt~~Gay~p~~~YT~edi~---------------- 235 (592)
+.+...++++.|...++.++-+-++....... -.+.| |++. .|+ ..+.|.+|++
T Consensus 23 ~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~-vGa---GTV~~~~~~~~a~~aGA~FivsP~~~ 98 (213)
T PRK06552 23 SKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVL-IGA---GTVLDAVTARLAILAGAQFIVSPSFN 98 (213)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeE-Eee---eeCCCHHHHHHHHHcCCCEEECCCCC
Confidence 78999999999999999999998876543321 11234 3443 343 2466777755
Q ss_pred -HHHHHHHHcCCeEEeccCCCCccccccccCCCccccCCCcccccccccCCCCCChhHHHHHHHHHHHHhhhcC-CCeEE
Q psy13692 236 -NVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFP-ESYVH 313 (592)
Q Consensus 236 -eIv~YA~~rGI~VIPEID~PGH~~a~~~~~P~l~~~c~~~~~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~lFp-~~~~H 313 (592)
+|+++|+++||-+||-.-+|.-.........++.. +-|...-..++ ++.+...|| -+++=
T Consensus 99 ~~v~~~~~~~~i~~iPG~~T~~E~~~A~~~Gad~vk--------------lFPa~~~G~~~----ik~l~~~~p~ip~~a 160 (213)
T PRK06552 99 RETAKICNLYQIPYLPGCMTVTEIVTALEAGSEIVK--------------LFPGSTLGPSF----IKAIKGPLPQVNVMV 160 (213)
T ss_pred HHHHHHHHHcCCCEECCcCCHHHHHHHHHcCCCEEE--------------ECCcccCCHHH----HHHHhhhCCCCEEEE
Confidence 78999999999999999988766544332223221 11222112233 555677788 58888
Q ss_pred ecCCc
Q psy13692 314 LGGDE 318 (592)
Q Consensus 314 iGGDE 318 (592)
+||=.
T Consensus 161 tGGI~ 165 (213)
T PRK06552 161 TGGVN 165 (213)
T ss_pred ECCCC
Confidence 88843
No 107
>PRK05764 aspartate aminotransferase; Provisional
Probab=42.76 E-value=71 Score=34.19 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=21.5
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEe
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVIP 250 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VIP 250 (592)
..++.+++++|++.|+++||-||-
T Consensus 179 ~~~~~~~~~~l~~~a~~~~~~ii~ 202 (393)
T PRK05764 179 AVYSPEELEAIADVAVEHDIWVLS 202 (393)
T ss_pred cccCHHHHHHHHHHHHHCCcEEEE
Confidence 458999999999999999998874
No 108
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=42.74 E-value=60 Score=33.49 Aligned_cols=47 Identities=15% Similarity=0.279 Sum_probs=37.0
Q ss_pred HHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEeccCCCC
Q psy13692 185 QLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVIPEIDTPG 256 (592)
Q Consensus 185 ~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VIPEID~PG 256 (592)
+|+....++...+|+-.++ ++.+++++++++|+.+|..++-|+...-
T Consensus 125 qi~~a~~~GAD~VlLi~~~-------------------------l~~~~l~~li~~a~~lGl~~lvevh~~~ 171 (260)
T PRK00278 125 QIYEARAAGADAILLIVAA-------------------------LDDEQLKELLDYAHSLGLDVLVEVHDEE 171 (260)
T ss_pred HHHHHHHcCCCEEEEEecc-------------------------CCHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 5777777777877774322 4668999999999999999999997554
No 109
>COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=42.65 E-value=26 Score=38.25 Aligned_cols=67 Identities=25% Similarity=0.410 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHhhC----CCcEEEEEeecCCccccccccCCccccCCCCCCC--CCCcHHHHHHHHHHHH--HcCCeEE
Q psy13692 178 PIKAIKKQLDIMSYN----KLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPD--AIYTEKMIKNVIEYAR--LRGIRVI 249 (592)
Q Consensus 178 ~v~~ik~~Id~Ma~~----KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~--~~YT~edi~eIv~YA~--~rGI~VI 249 (592)
|.+.|++.|+.+..+ .-++|-+||+- ||-++ ..+||-.|. ..-+.+|++++++-|+ .+-|++=
T Consensus 99 ~~e~i~~al~~~~e~~~~~ga~ilGiHLEG----P~ls~-----~kkGAh~~~~ir~~~~~~~~~~~~~a~g~i~~vTlA 169 (380)
T COG1820 99 SLEKIKAALRAIREAIAKGGAQILGIHLEG----PFLSP-----EKKGAHNPEYIRPPDPEELEQLIAAADGLIKLVTLA 169 (380)
T ss_pred CHHHHHHHHHHHHHHHhccCCceEEEEeec----CccCH-----hhccCCCHHHhCCCCHHHHHHHHhhccCceEEEEEC
Confidence 456666666665544 44889999855 55443 236886553 3357777777777766 4447788
Q ss_pred eccC
Q psy13692 250 PEID 253 (592)
Q Consensus 250 PEID 253 (592)
||.+
T Consensus 170 PE~~ 173 (380)
T COG1820 170 PELD 173 (380)
T ss_pred CCCC
Confidence 9987
No 110
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=42.62 E-value=22 Score=36.57 Aligned_cols=72 Identities=21% Similarity=0.248 Sum_probs=48.3
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEeccCCCCccccccccCCCccccCCCcccccccccCCCCCChhHHHHHHHHHHHHhhh
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQR 306 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VIPEID~PGH~~a~~~~~P~l~~~c~~~~~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~l 306 (592)
..++++++++++++|...|++++-|+....-....+...+.+.. +|-.|-.|++.--+...++.+.
T Consensus 133 ~~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiG--------------INnRdL~t~~vd~~~~~~L~~~ 198 (247)
T PRK13957 133 RILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIG--------------INTRDLDTFQIHQNLVEEVAAF 198 (247)
T ss_pred hhCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEE--------------EeCCCCccceECHHHHHHHHhh
Confidence 45799999999999999999999999776665544444444331 2223334444444556677788
Q ss_pred cCCCeE
Q psy13692 307 FPESYV 312 (592)
Q Consensus 307 Fp~~~~ 312 (592)
+|...+
T Consensus 199 ip~~~~ 204 (247)
T PRK13957 199 LPPNIV 204 (247)
T ss_pred CCCCcE
Confidence 885443
No 111
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=42.61 E-value=43 Score=34.43 Aligned_cols=81 Identities=17% Similarity=0.249 Sum_probs=50.9
Q ss_pred CCCCcccceecCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHH
Q psy13692 161 PQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEY 240 (592)
Q Consensus 161 P~f~~RGlmLD~sR~f~~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~Y 240 (592)
|++.+ |++.-.- .+.+-+.++++++.+..+++.+=.+++-++-.-. +-.++ =.|.+ ..| .+.+++++.
T Consensus 7 P~wa~-G~~~~~~-~~~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-----~~~f~--~~~d~-~~F--pdp~~~i~~ 74 (265)
T cd06589 7 PKWAF-GYWLSRY-GYGDQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-----YGDFT--FDWDA-GKF--PNPKSMIDE 74 (265)
T ss_pred cHHHH-HHHHhcC-CCCCHHHHHHHHHHHHHcCCCccEEEECcccccC-----Cceee--eecCh-hhC--CCHHHHHHH
Confidence 44443 5553222 2568899999999999999998777775532111 11110 00111 112 346899999
Q ss_pred HHHcCCeEEeccC
Q psy13692 241 ARLRGIRVIPEID 253 (592)
Q Consensus 241 A~~rGI~VIPEID 253 (592)
.+++|++|++-++
T Consensus 75 l~~~g~~~~~~~~ 87 (265)
T cd06589 75 LHDNGVKLVLWID 87 (265)
T ss_pred HHHCCCEEEEEeC
Confidence 9999999999886
No 112
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=41.18 E-value=62 Score=34.75 Aligned_cols=93 Identities=18% Similarity=0.208 Sum_probs=65.8
Q ss_pred eEEEEecChhhHHHHHHHHhhCCCCCCCCCceeeeeeEEecCCCCCcccceec---------------------------
Q psy13692 119 SCLLTSQSIWGILRGLETFSQLPIPAPNGDQLIIRVQTIEDFPQFPHRGLLVD--------------------------- 171 (592)
Q Consensus 119 ~i~I~a~t~~Ga~~gl~TL~QL~~~~~~~~~~~i~~~~I~D~P~f~~RGlmLD--------------------------- 171 (592)
.++|-|...-+.+.=|.-|.|-+. ... .+.|. ..+-+|.|||
T Consensus 162 EaHlDGqGEP~lYP~l~~lVqalk-~~~-------~v~vV---SmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~A 230 (414)
T COG2100 162 EAHLDGQGEPLLYPHLVDLVQALK-EHK-------GVEVV---SMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPKLA 230 (414)
T ss_pred EEEecCCCCCccchhHHHHHHHHh-cCC-------CceEE---EEeeCceeccHHHHHHHHHhCCceEEeecccCCHHHH
Confidence 478889888888888888888775 211 11110 0111222222
Q ss_pred ---CCCCCCCHHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcC
Q psy13692 172 ---GSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRG 245 (592)
Q Consensus 172 ---~sR~f~~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rG 245 (592)
.+|..+.++.+++++..++..|+++|.- |+-++ | |..+|+..||+||++-|
T Consensus 231 k~L~G~~dYdv~kvle~aE~i~~a~idvlIa--------Pv~lP--------G-------~ND~E~~~iIe~A~~iG 284 (414)
T COG2100 231 KMLAGRKDYDVKKVLEVAEYIANAGIDVLIA--------PVWLP--------G-------VNDDEMPKIIEWAREIG 284 (414)
T ss_pred HHhcCccccCHHHHHHHHHHHHhCCCCEEEe--------eeecC--------C-------cChHHHHHHHHHHHHhC
Confidence 3688999999999999999999999974 33222 2 68899999999999988
No 113
>PRK08960 hypothetical protein; Provisional
Probab=41.15 E-value=82 Score=33.82 Aligned_cols=24 Identities=13% Similarity=0.254 Sum_probs=21.3
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEe
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVIP 250 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VIP 250 (592)
..++.+++++|++.|+++|+-||-
T Consensus 180 ~~~~~~~~~~l~~~~~~~~~~li~ 203 (387)
T PRK08960 180 TLLSRDELAALSQALRARGGHLVV 203 (387)
T ss_pred cCcCHHHHHHHHHHHHHcCCEEEE
Confidence 568999999999999999997763
No 114
>PRK07683 aminotransferase A; Validated
Probab=40.90 E-value=80 Score=33.98 Aligned_cols=23 Identities=9% Similarity=0.283 Sum_probs=20.9
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VI 249 (592)
..||.+++++|++.|+++|+-||
T Consensus 176 ~~~s~~~~~~l~~~~~~~~~~ii 198 (387)
T PRK07683 176 VTLSKEELQDIADVLKDKNIFVL 198 (387)
T ss_pred cCCCHHHHHHHHHHHHHcCeEEE
Confidence 56899999999999999998776
No 115
>PRK10426 alpha-glucosidase; Provisional
Probab=40.69 E-value=1.3e+02 Score=35.22 Aligned_cols=133 Identities=14% Similarity=0.199 Sum_probs=72.5
Q ss_pred cCCCCCcccceecCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCC--CCCCCCCcHHHHHH
Q psy13692 159 DFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGA--FGPDAIYTEKMIKN 236 (592)
Q Consensus 159 D~P~f~~RGlmLD~sR~f~~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Ga--y~p~~~YT~edi~e 236 (592)
--|++.++|+.+- .+ -+-+.++++++.+...++-+=-+++-|-++.++. ++..-. .+. |.+ ..| -|.++
T Consensus 203 ~~P~Wal~G~~~g--~~-~~~~~v~~v~~~~r~~~IP~d~i~lddw~~~~~~--~~g~~~-~~~~~~d~-~~F--Pdp~~ 273 (635)
T PRK10426 203 ELPDWAYDGVTLG--IQ-GGTEVVQKKLDTMRNAGVKVNGIWAQDWSGIRMT--SFGKRL-MWNWKWDS-ERY--PQLDS 273 (635)
T ss_pred CCChhhccCcccc--cc-CCHHHHHHHHHHHHHcCCCeeEEEEecccccccc--cccccc-cccceECh-hhC--CCHHH
Confidence 3478888888753 22 2467899999999998876555555332222211 110000 000 111 111 24688
Q ss_pred HHHHHHHcCCeEEeccCCCCccccccccCCC-----ccccCCC-c----ccccccccCCCCCChhHHHHHHHHHHH
Q psy13692 237 VIEYARLRGIRVIPEIDTPGHTDSMEPGMPQ-----IHCHCPH-R----VEGKTFVGPLDPTKNVTLDFVRDLFTE 302 (592)
Q Consensus 237 Iv~YA~~rGI~VIPEID~PGH~~a~~~~~P~-----l~~~c~~-~----~~g~~~~~~lnp~~~~ty~fl~~ll~E 302 (592)
+|+.-+++||+|+.-|| |+=... ..-|.+ +...-.+ . ..+....+.+|.+||++.+..++.+++
T Consensus 274 mi~~L~~~G~k~v~~i~-P~v~~~-~~~y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~ 347 (635)
T PRK10426 274 RIKQLNEEGIQFLGYIN-PYLASD-GDLCEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKK 347 (635)
T ss_pred HHHHHHHCCCEEEEEEc-CccCCC-CHHHHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHH
Confidence 89999999999999987 542210 000111 1111011 0 001111357999999999999888764
No 116
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=40.62 E-value=94 Score=35.11 Aligned_cols=23 Identities=17% Similarity=0.550 Sum_probs=21.0
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VI 249 (592)
..|+.+++++|++.|+++++-||
T Consensus 296 ~v~~~~~l~~i~~~a~~~~~~ii 318 (517)
T PRK13355 296 ALYPREVLQQIVDIAREHQLIIF 318 (517)
T ss_pred cCcCHHHHHHHHHHHHHcCcEEE
Confidence 57999999999999999998776
No 117
>PRK05839 hypothetical protein; Provisional
Probab=40.00 E-value=1.3e+02 Score=32.13 Aligned_cols=23 Identities=9% Similarity=0.049 Sum_probs=21.5
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VI 249 (592)
..|+.+++++|++.|+++||-||
T Consensus 170 ~~~s~~~l~~i~~~~~~~~~~ii 192 (374)
T PRK05839 170 RTLSLEELIEWVKLALKHDFILI 192 (374)
T ss_pred cccCHHHHHHHHHHHHHcCCEEE
Confidence 57999999999999999999888
No 118
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=39.90 E-value=1.1e+02 Score=32.75 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=21.0
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VI 249 (592)
..||.+++++|++.|+++|+-||
T Consensus 179 ~~~~~~~~~~i~~~a~~~~~~ii 201 (383)
T TIGR03540 179 AVAPLKFFKELVEFAKEYNIIVC 201 (383)
T ss_pred ccCCHHHHHHHHHHHHHcCEEEE
Confidence 56999999999999999998776
No 119
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=39.74 E-value=32 Score=35.58 Aligned_cols=74 Identities=15% Similarity=0.247 Sum_probs=51.3
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEeccCCCCccccccccCCCccccCCCcccccccccCCCCCChhHHHHHHHHHHHHhhh
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQR 306 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VIPEID~PGH~~a~~~~~P~l~~~c~~~~~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~l 306 (592)
..++++++++++++|+++|++++-|+..--+..-.++..+.+. | +|-.|=++++.--+...++.+.
T Consensus 138 ~~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iI-------------G-INnRdL~tf~vdl~~t~~la~~ 203 (254)
T COG0134 138 AALDDEQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKII-------------G-INNRDLTTLEVDLETTEKLAPL 203 (254)
T ss_pred HhcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEE-------------E-EeCCCcchheecHHHHHHHHhh
Confidence 4689999999999999999999999976666554444333332 1 1223335666555667888888
Q ss_pred cCCCeEEe
Q psy13692 307 FPESYVHL 314 (592)
Q Consensus 307 Fp~~~~Hi 314 (592)
.|+..+=|
T Consensus 204 ~p~~~~~I 211 (254)
T COG0134 204 IPKDVILI 211 (254)
T ss_pred CCCCcEEE
Confidence 88765444
No 120
>PRK07324 transaminase; Validated
Probab=39.59 E-value=1.2e+02 Score=32.53 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=22.0
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEec
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVIPE 251 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VIPE 251 (592)
..++++++++|++.|+++|+-||-.
T Consensus 168 ~~~~~~~l~~i~~~a~~~~~~ii~D 192 (373)
T PRK07324 168 ALMDRAYLEEIVEIARSVDAYVLSD 192 (373)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 5689999999999999999988743
No 121
>PRK05942 aspartate aminotransferase; Provisional
Probab=39.41 E-value=1.1e+02 Score=32.97 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=21.2
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VI 249 (592)
..+|.+++++|++.|+++|+-||
T Consensus 185 ~~~s~~~~~~i~~~a~~~~~~iI 207 (394)
T PRK05942 185 ATAPREFFEEIVAFARKYEIMLV 207 (394)
T ss_pred CcCCHHHHHHHHHHHHHcCeEEE
Confidence 56999999999999999999887
No 122
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=38.40 E-value=1.1e+02 Score=32.83 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=21.0
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VI 249 (592)
..||.+++++|++.|+++++-||
T Consensus 180 ~~~s~~~~~~l~~~a~~~~~~ii 202 (393)
T TIGR03538 180 AVLSLDTLKKLIELADQYGFIIA 202 (393)
T ss_pred cccCHHHHHHHHHHHHHCCEEEE
Confidence 56999999999999999998776
No 123
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=38.40 E-value=2.4e+02 Score=30.14 Aligned_cols=122 Identities=17% Similarity=0.227 Sum_probs=71.1
Q ss_pred eeeeEEecCCCCCcccc-eecC-----CCCC-------------CCHHHHHHHHHHHhhCCCcEEEEEeecCCccccccc
Q psy13692 152 IRVQTIEDFPQFPHRGL-LVDG-----SRHY-------------LPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESK 212 (592)
Q Consensus 152 i~~~~I~D~P~f~~RGl-mLD~-----sR~f-------------~~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~ 212 (592)
+..+.+.+.|+.+.|=+ +-|- =|.| .-.+-+++.-+++|..++|-.-+-=+......
T Consensus 10 ~~~~~~~~~P~~~~R~lNhWDN~dgsiERGYaG~Sif~~~~~~~~~~~R~~~YARllASiGINgvvlNNVNa~~~~---- 85 (328)
T PF07488_consen 10 LSGLDIVENPKAPLRMLNHWDNLDGSIERGYAGKSIFFWDGLPRRDLTRYRDYARLLASIGINGVVLNNVNANPKL---- 85 (328)
T ss_dssp -TT-EEEE--SSSEEEEE--B-TTS-BTT--SSS-SSEETTEETS--HHHHHHHHHHHHTT--EEE-S-SS--CGG----
T ss_pred CcCCccccCCCcceeecccccCCCCceecccCcccccccCCCcccchhHHHHHHHHHhhcCCceEEecccccChhh----
Confidence 56678889999998866 2232 2332 12467888889999999999887544433311
Q ss_pred cCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEeccCCCCccccccccCCCccccCCCcccccccccCCCCCChhH
Q psy13692 213 KFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRVEGKTFVGPLDPTKNVT 292 (592)
Q Consensus 213 ~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VIPEID~PGH~~a~~~~~P~l~~~c~~~~~g~~~~~~lnp~~~~t 292 (592)
|+. . --++++.|.+-.|.+||+|--.++.-.-.. + |. ....||.+|++
T Consensus 86 ----Lt~--~-------~l~~v~~lAdvfRpYGIkv~LSvnFasP~~--------l---------gg--L~TaDPld~~V 133 (328)
T PF07488_consen 86 ----LTP--E-------YLDKVARLADVFRPYGIKVYLSVNFASPIE--------L---------GG--LPTADPLDPEV 133 (328)
T ss_dssp ----GST--T-------THHHHHHHHHHHHHTT-EEEEEE-TTHHHH--------T---------TS---S---TTSHHH
T ss_pred ----cCH--H-------HHHHHHHHHHHHhhcCCEEEEEeeccCCcc--------c---------CC--cCcCCCCCHHH
Confidence 221 1 246888999999999999998876322111 1 11 34678999999
Q ss_pred HHHHHHHHHHHhhhcCC
Q psy13692 293 LDFVRDLFTELGQRFPE 309 (592)
Q Consensus 293 y~fl~~ll~Ev~~lFp~ 309 (592)
.+.-++..+|+-+.+|+
T Consensus 134 ~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 134 RQWWKDKADEIYSAIPD 150 (328)
T ss_dssp HHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 99999999999999996
No 124
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=37.90 E-value=1.3e+02 Score=32.22 Aligned_cols=117 Identities=15% Similarity=0.162 Sum_probs=66.5
Q ss_pred CCCCHHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEeccCC
Q psy13692 175 HYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVIPEIDT 254 (592)
Q Consensus 175 ~f~~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VIPEID~ 254 (592)
.+.+-+.++++++.+..+++-+=.+++-++ | . ..+..++ |++ ..|. |.+++++..+++|++|++-++-
T Consensus 19 ~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~--~--~-~~~~~f~----~d~-~~fP--dp~~m~~~l~~~g~~~~~~~~P 86 (339)
T cd06604 19 SYYPEEEVREIADEFRERDIPCDAIYLDID--Y--M-DGYRVFT----WDK-ERFP--DPKELIKELHEQGFKVVTIIDP 86 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcceEEECch--h--h-CCCCcee----ecc-ccCC--CHHHHHHHHHHCCCEEEEEEeC
Confidence 455788999999999999988666665322 1 1 1121111 111 1222 4588999999999999987652
Q ss_pred CCccccccccCCCcc-----ccCCC-cc------cccccccCCCCCChhHHHHHHHHHHHHhh
Q psy13692 255 PGHTDSMEPGMPQIH-----CHCPH-RV------EGKTFVGPLDPTKNVTLDFVRDLFTELGQ 305 (592)
Q Consensus 255 PGH~~a~~~~~P~l~-----~~c~~-~~------~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~ 305 (592)
-=....-...+.+.. ..-.+ .+ .|. .+.+|.+||++.++-.++++++.+
T Consensus 87 ~v~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~--~~~~Dftnp~a~~ww~~~~~~~~~ 147 (339)
T cd06604 87 GVKVDPGYDVYEEGLENDYFVKDPDGELYIGRVWPGL--SAFPDFTNPKVREWWGSLYKKFVD 147 (339)
T ss_pred ceeCCCCChHHHHHHHCCeEEECCCCCEEEEEecCCC--ccccCCCChHHHHHHHHHHHHHhh
Confidence 111100000011110 00000 00 122 345899999999999999888764
No 125
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=37.33 E-value=1.1e+02 Score=32.63 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=21.2
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VI 249 (592)
..||.+++++|++.|+++|+-||
T Consensus 156 ~~~~~~~~~~l~~~a~~~~~~ii 178 (354)
T PRK06358 156 QLISKEEMKKILDKCEKRNIYLI 178 (354)
T ss_pred CccCHHHHHHHHHHHHhcCCEEE
Confidence 56999999999999999999877
No 126
>PRK08363 alanine aminotransferase; Validated
Probab=36.96 E-value=1.1e+02 Score=33.07 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=20.6
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VI 249 (592)
..++.+++++|++.|+++|+-||
T Consensus 181 ~~~~~~~~~~l~~~a~~~~~~li 203 (398)
T PRK08363 181 ALYEKKTLKEILDIAGEHDLPVI 203 (398)
T ss_pred cCcCHHHHHHHHHHHHHcCeEEE
Confidence 46899999999999999998776
No 127
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=36.34 E-value=98 Score=33.37 Aligned_cols=58 Identities=17% Similarity=0.137 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEeccC
Q psy13692 174 RHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVIPEID 253 (592)
Q Consensus 174 R~f~~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VIPEID 253 (592)
+..++++.++++|+.++..+. ..++++-. +.+...|+.+|+++++++|+.+ .|.
T Consensus 43 ~~~~~~e~~~~ii~~~~~~g~--~~v~~~GG----------------------EPll~~~~~~il~~~~~~g~~~--~i~ 96 (378)
T PRK05301 43 GAELSTEEWIRVLREARALGA--LQLHFSGG----------------------EPLLRKDLEELVAHARELGLYT--NLI 96 (378)
T ss_pred cCCCCHHHHHHHHHHHHHcCC--cEEEEECC----------------------ccCCchhHHHHHHHHHHcCCcE--EEE
Confidence 456789999999999987664 34443321 2234567899999999999865 355
Q ss_pred CCCc
Q psy13692 254 TPGH 257 (592)
Q Consensus 254 ~PGH 257 (592)
|=|.
T Consensus 97 TNG~ 100 (378)
T PRK05301 97 TSGV 100 (378)
T ss_pred CCCc
Confidence 6564
No 128
>TIGR03586 PseI pseudaminic acid synthase.
Probab=36.15 E-value=1.1e+02 Score=32.91 Aligned_cols=73 Identities=12% Similarity=0.114 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHhhCCCcE--EEEEeecCCccccccccCCccccCCCCCC--------CCCCcHHHHHHHHHHHHHcCCe
Q psy13692 178 PIKAIKKQLDIMSYNKLNV--LHWHLVDDQSFPYESKKFPSLSLKGAFGP--------DAIYTEKMIKNVIEYARLRGIR 247 (592)
Q Consensus 178 ~v~~ik~~Id~Ma~~KlN~--lHwHltDdqsfp~e~~~~P~Lt~~Gay~p--------~~~YT~edi~eIv~YA~~rGI~ 247 (592)
+++.-|++||..+..+.+. ||.+-.|. +-.....-|.....+.|.. .-..+.++.++|.+||+++||.
T Consensus 15 ~~~~A~~lI~~A~~aGAdavKFQ~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~ 92 (327)
T TIGR03586 15 SLERALAMIEAAKAAGADAIKLQTYTPDT--ITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELGLT 92 (327)
T ss_pred hHHHHHHHHHHHHHhCCCEEEeeeccHHH--hhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhCCc
Confidence 6899999999999988885 44443332 1100000000001122211 1246789999999999999999
Q ss_pred EEecc
Q psy13692 248 VIPEI 252 (592)
Q Consensus 248 VIPEI 252 (592)
++-++
T Consensus 93 ~~stp 97 (327)
T TIGR03586 93 IFSSP 97 (327)
T ss_pred EEEcc
Confidence 88665
No 129
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=35.66 E-value=53 Score=33.40 Aligned_cols=65 Identities=17% Similarity=0.151 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEeccCCC
Q psy13692 178 PIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVIPEIDTP 255 (592)
Q Consensus 178 ~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VIPEID~P 255 (592)
.++.+++.|+..+..+...+.+|.... ++. ....+ .| --..+-+++|.++|+++||++.-|--.|
T Consensus 88 ~~~~~~~~i~~a~~lGa~~i~~~~~~~-~~~---~~~~~-----~~----~~~~~~l~~l~~~a~~~gv~l~iE~~~~ 152 (275)
T PRK09856 88 SLDMIKLAMDMAKEMNAGYTLISAAHA-GYL---TPPNV-----IW----GRLAENLSELCEYAENIGMDLILEPLTP 152 (275)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCCC-CCC---CCHHH-----HH----HHHHHHHHHHHHHHHHcCCEEEEecCCC
Confidence 367899999999999999999876432 111 00000 00 0133568999999999999999995433
No 130
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=35.22 E-value=42 Score=30.36 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=23.8
Q ss_pred cHHHHHHHHHHHHHcCCeEEeccCCCCccc
Q psy13692 230 TEKMIKNVIEYARLRGIRVIPEIDTPGHTD 259 (592)
Q Consensus 230 T~edi~eIv~YA~~rGI~VIPEID~PGH~~ 259 (592)
|.+|+++++++|+++++.|.+-= -||.-
T Consensus 9 s~~ev~~~v~~a~~~~~~v~~~g--~G~~~ 36 (139)
T PF01565_consen 9 SVEEVQAIVKFANENGVPVRVRG--GGHSW 36 (139)
T ss_dssp SHHHHHHHHHHHHHTTSEEEEES--SSTTS
T ss_pred CHHHHHHHHHHHHHcCCcEEEEc--CCCCc
Confidence 78999999999999999999764 45654
No 131
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=34.59 E-value=2.1e+02 Score=31.76 Aligned_cols=23 Identities=9% Similarity=0.453 Sum_probs=21.6
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VI 249 (592)
..|+++++++|++.|++++|-||
T Consensus 215 ~~~s~e~l~~l~~~~~~~~i~lI 237 (447)
T PLN02607 215 ATVQRSVLEDILDFVVRKNIHLV 237 (447)
T ss_pred cccCHHHHHHHHHHHHHCCCEEE
Confidence 56999999999999999999988
No 132
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=34.39 E-value=1.7e+02 Score=31.22 Aligned_cols=122 Identities=16% Similarity=0.212 Sum_probs=73.8
Q ss_pred EEeecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEeccCCCCccc-----c-------------
Q psy13692 199 WHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVIPEIDTPGHTD-----S------------- 260 (592)
Q Consensus 199 wHltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VIPEID~PGH~~-----a------------- 260 (592)
+-++|...-+-++++.|.. | .|+-+.+.+.++-+.+.||+-|--+-.|.|-. +
T Consensus 37 lFV~eg~~~~~~I~smPg~-----~----r~sid~l~~~~~~~~~~Gi~~v~lFgv~~~Kd~~gs~A~~~~g~v~~air~ 107 (322)
T PRK13384 37 IFIEEHITDAVPISTLPGI-----S----RLPESALADEIERLYALGIRYVMPFGISHHKDAKGSDTWDDNGLLARMVRT 107 (322)
T ss_pred EEEecCCCCceecCCCCCc-----c----eECHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccCCCChHHHHHHH
Confidence 3445555555566777754 3 38999999999999999999998887787722 1
Q ss_pred ccccCCCcccc---CCC--cccccccccCCC---CCChhHHHHHHHHHHHHhhhcCCCeEEecCCcccccccc--CCHHH
Q psy13692 261 MEPGMPQIHCH---CPH--RVEGKTFVGPLD---PTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWE--QNPEI 330 (592)
Q Consensus 261 ~~~~~P~l~~~---c~~--~~~g~~~~~~ln---p~~~~ty~fl~~ll~Ev~~lFp~~~~HiGGDEv~~~~w~--~~p~~ 330 (592)
..+..|++... |.. ...|. +|.++ ..|++|.+.|.++=--.+ --|+|=|.-+.-. .-..+
T Consensus 108 iK~~~pdl~vi~DVcLc~YT~hGH--cGil~~g~i~ND~Tl~~L~~~Als~A--------~AGADiVAPSdMMDGrV~aI 177 (322)
T PRK13384 108 IKAAVPEMMVIPDICFCEYTDHGH--CGVLHNDEVDNDATVENLVKQSVTAA--------KAGADMLAPSAMMDGQVKAI 177 (322)
T ss_pred HHHHCCCeEEEeeeecccCCCCCc--eeeccCCcCccHHHHHHHHHHHHHHH--------HcCCCeEecccccccHHHHH
Confidence 11245777532 222 33455 66665 358889888776532222 2466655432111 12245
Q ss_pred HHHHHhCCC
Q psy13692 331 KAFMSTRQW 339 (592)
Q Consensus 331 ~~~m~~~g~ 339 (592)
++.+.++|+
T Consensus 178 R~aLd~~g~ 186 (322)
T PRK13384 178 RQGLDAAGF 186 (322)
T ss_pred HHHHHHCCC
Confidence 666666666
No 133
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=34.37 E-value=1e+02 Score=33.28 Aligned_cols=24 Identities=25% Similarity=0.559 Sum_probs=21.3
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEe
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVIP 250 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VIP 250 (592)
..++.+++++|++.|+++|+-||-
T Consensus 184 ~~~~~~~~~~i~~~a~~~~~~ii~ 207 (403)
T TIGR01265 184 SVFSRDHLQKIAEVARKLGIPIIA 207 (403)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEE
Confidence 468999999999999999998773
No 134
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=34.30 E-value=89 Score=33.94 Aligned_cols=55 Identities=15% Similarity=0.204 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHhhCCCcEEE--EEeecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEeccC
Q psy13692 178 PIKAIKKQLDIMSYNKLNVLH--WHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVIPEID 253 (592)
Q Consensus 178 ~v~~ik~~Id~Ma~~KlN~lH--wHltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VIPEID 253 (592)
+.+..++.|+.|+.+++..+- +|+. +-. ..-..+++++|.++|+++|++||..|.
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ip-------------e~~--------~~~~~~~~~~l~~~a~~~~~~v~~Dis 68 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIP-------------EDD--------PEDYLERLKELLKLAKELGMEVIADIS 68 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE------------------------------HHHHHHHHHHHHHHCT-EEEEEE-
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcC-------------CCC--------HHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 688999999999999998653 3432 210 012568999999999999999999994
No 135
>KOG0258|consensus
Probab=34.26 E-value=1.8e+02 Score=32.09 Aligned_cols=108 Identities=18% Similarity=0.405 Sum_probs=65.8
Q ss_pred CCeEEEEecChhhHHHHHHHHhhCCCCCCCCCceeeeeeEEecCCCCC---------cccceecCCCCC-CCHHHHHHHH
Q psy13692 117 NSSCLLTSQSIWGILRGLETFSQLPIPAPNGDQLIIRVQTIEDFPQFP---------HRGLLVDGSRHY-LPIKAIKKQL 186 (592)
Q Consensus 117 ~~~i~I~a~t~~Ga~~gl~TL~QL~~~~~~~~~~~i~~~~I~D~P~f~---------~RGlmLD~sR~f-~~v~~ik~~I 186 (592)
++-|.+++ ||=.|+.++++|+......| ..|| |-.+|-|. --...||-.+++ +.++.|++.+
T Consensus 136 p~dI~LT~----GAS~ai~~il~l~~~~~~~G-vliP---iPQYPLYsAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~ 207 (475)
T KOG0258|consen 136 PEDIFLTT----GASPAIRSILSLLIAGKKTG-VLIP---IPQYPLYSATISLLGGTQVPYYLDEESNWSLDVAELERSV 207 (475)
T ss_pred HHHeeecC----CCcHHHHHHHHHHhcCCCCc-eEee---cCCCchhHHHHHHhCCcccceeeccccCCCCCHHHHHHHH
Confidence 34577765 45566778888876222222 2232 44455443 123356777776 4577888887
Q ss_pred HHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCC-CCCCcHHHHHHHHHHHHHcCCeEEec
Q psy13692 187 DIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGP-DAIYTEKMIKNVIEYARLRGIRVIPE 251 (592)
Q Consensus 187 d~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p-~~~YT~edi~eIv~YA~~rGI~VIPE 251 (592)
+... ..+|+=-+-+.+ + | +| +...|.+-|++|+.+|++.|+-++..
T Consensus 208 ~eA~-k~i~~r~lvvIN--------P--------G--NPTGqvls~e~ie~i~~fa~~~~l~llaD 254 (475)
T KOG0258|consen 208 DEAR-KGINPRALVVIN--------P--------G--NPTGQVLSEENIEGIICFAAEEGLVLLAD 254 (475)
T ss_pred HHHh-ccCCceEEEEEC--------C--------C--CccchhhcHHHHHHHHHHHHHcCeEEech
Confidence 7765 555544333222 1 1 12 26899999999999999999988753
No 136
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=33.53 E-value=1.9e+02 Score=30.77 Aligned_cols=109 Identities=18% Similarity=0.298 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhhCCCcEEEEE--eecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEeccCCCC
Q psy13692 179 IKAIKKQLDIMSYNKLNVLHWH--LVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVIPEIDTPG 256 (592)
Q Consensus 179 v~~ik~~Id~Ma~~KlN~lHwH--ltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VIPEID~PG 256 (592)
-+.+++++..=. .-.|-|.|- +.+...-+-++++.|.. | .||-+++.+-++-+...||+.|-.+-+|-
T Consensus 16 ~~~~R~lv~Et~-L~~~dLI~PiFV~eg~~~~~~I~SMPgv-----~----r~s~d~l~~~~~~~~~lGi~av~LFgvp~ 85 (330)
T COG0113 16 SPALRRLVRETR-LTPNDLIYPIFVVEGENIKEEIPSMPGV-----Y----RYSLDRLVEEAEELVDLGIPAVILFGVPD 85 (330)
T ss_pred CHHHHHHHHhcC-CCHHHeeEeEEEecCCCCccccCCCCCc-----e----eccHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 345555554422 222333332 33333334556666643 3 38999999999999999999999999885
Q ss_pred cc--c-----c-------------ccccCCCcccc---CCC--cccccccccCCC----CCChhHHHHHHHH
Q psy13692 257 HT--D-----S-------------MEPGMPQIHCH---CPH--RVEGKTFVGPLD----PTKNVTLDFVRDL 299 (592)
Q Consensus 257 H~--~-----a-------------~~~~~P~l~~~---c~~--~~~g~~~~~~ln----p~~~~ty~fl~~l 299 (592)
+. . + +.+..|++... |.. ...|. +|.++ ..|++|.+.+.++
T Consensus 86 ~~~Kd~~gs~A~~~~givqravr~ik~~~p~l~iitDvcLceyT~HGH--cGil~~~~~V~ND~Tle~l~k~ 155 (330)
T COG0113 86 DSKKDETGSEAYDPDGIVQRAVRAIKEAFPELVVITDVCLCEYTDHGH--CGILDDGGYVDNDETLEILAKQ 155 (330)
T ss_pred ccccCcccccccCCCChHHHHHHHHHHhCCCeEEEeeecccCCcCCCc--cccccCCCeecchHHHHHHHHH
Confidence 52 1 1 11235666432 322 33455 66663 4677888776654
No 137
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=33.45 E-value=1e+02 Score=32.80 Aligned_cols=59 Identities=14% Similarity=0.112 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEeccC
Q psy13692 174 RHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVIPEID 253 (592)
Q Consensus 174 R~f~~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VIPEID 253 (592)
+..++.+.++++|+.+...+.- .++++-. +..-..|+.+|++||+++|+.+ .|.
T Consensus 34 ~~~l~~e~~~~ii~~~~~~g~~--~v~~~GG----------------------EPll~~~~~~ii~~~~~~g~~~--~l~ 87 (358)
T TIGR02109 34 KAELTTEEWTDVLTQAAELGVL--QLHFSGG----------------------EPLARPDLVELVAHARRLGLYT--NLI 87 (358)
T ss_pred cCCCCHHHHHHHHHHHHhcCCc--EEEEeCc----------------------cccccccHHHHHHHHHHcCCeE--EEE
Confidence 4568999999999999876654 4444332 1223356889999999999865 456
Q ss_pred CCCcc
Q psy13692 254 TPGHT 258 (592)
Q Consensus 254 ~PGH~ 258 (592)
|-|..
T Consensus 88 TNG~l 92 (358)
T TIGR02109 88 TSGVG 92 (358)
T ss_pred eCCcc
Confidence 66653
No 138
>PLN00175 aminotransferase family protein; Provisional
Probab=33.36 E-value=1.4e+02 Score=32.71 Aligned_cols=23 Identities=4% Similarity=0.228 Sum_probs=21.0
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VI 249 (592)
..||.+++++|++.|+++++-||
T Consensus 202 ~~~s~~~l~~l~~~a~~~~~~ii 224 (413)
T PLN00175 202 KMFTREELELIASLCKENDVLAF 224 (413)
T ss_pred cCCCHHHHHHHHHHHHHcCcEEE
Confidence 56999999999999999998776
No 139
>PF05213 Corona_NS2A: Coronavirus NS2A protein; InterPro: IPR007878 This entry is represented by Coronavirus non-structural protein 2A (32kDa); it is a family of uncharacterised viral proteins. Members have a phosphoesterase module (2H) [] and are predicted to be involved in RNA modification. The viral group of 2H phosphoesterases contains proteins from two unrelated virus types: the type C rotaviruses (VP3 protein, IPR011181 from INTERPRO) that are double stranded multipartite RNA viruses and the coronaviruses (NS2 protein, this group) that are positive strand RNA viruses. Given that these viruses have vertebrate hosts, it is likely that the 2H phosphoesterase domain was derived from the host by one of virus groups followed by rapid sequence divergence []. Subsequently, it may have been exchanged between the viral families. Although the direction of the exchange is not clear, it is possible that a double stranded replicative form of a subgenomic RNA transcript of the coronavirus NS2 was stabilised by a rotavirus and incorporated into its multiple double stranded RNA genome []. These proteins can be utilised as novel drug targets because of their predicted RNA modification role.
Probab=32.79 E-value=89 Score=31.53 Aligned_cols=103 Identities=20% Similarity=0.263 Sum_probs=64.9
Q ss_pred cChhhHHHHHHHHhhCCCCCCCCCceeeeeeEEecCCCCCcccceecCCCCCCC-HH-HHHHHHHHHhhCCCcEEEE--E
Q psy13692 125 QSIWGILRGLETFSQLPIPAPNGDQLIIRVQTIEDFPQFPHRGLLVDGSRHYLP-IK-AIKKQLDIMSYNKLNVLHW--H 200 (592)
Q Consensus 125 ~t~~Ga~~gl~TL~QL~~~~~~~~~~~i~~~~I~D~P~f~~RGlmLD~sR~f~~-v~-~ik~~Id~Ma~~KlN~lHw--H 200 (592)
....+++++|| .||+. .. -.++++-.|.. -+.|||.+-+-++ |+ .|+++||.|.+.+.+.--= |
T Consensus 18 ~~f~~~~~~LQ--~~~~~-eG-------~d~k~QkaPHl--Sl~mL~Isd~~i~~V~~~iq~ViddM~~~~~~it~tnp~ 85 (248)
T PF05213_consen 18 EGFMLNFKDLQ--FQLLE-EG-------VDCKLQKAPHL--SLGMLDISDEDIPDVETAIQKVIDDMVWFEGDITFTNPH 85 (248)
T ss_pred hhHHHHHHHHH--HHHHH-cC-------CCccccccCee--EEEEEEcChhhhhhHHHHHHHHHHHhhcccceEEecCce
Confidence 45678889998 47775 11 11234444443 3569999988887 55 7889999999998833221 2
Q ss_pred eecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEeccCCCCccccccc
Q psy13692 201 LVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVIPEIDTPGHTDSMEP 263 (592)
Q Consensus 201 ltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VIPEID~PGH~~a~~~ 263 (592)
+-+ .-+-.+.+++-+ =--+|+.+-+++|| +.|.++-|..
T Consensus 86 MLg-~~yV~nV~Gv~s----------------lh~ki~n~~~~kgi-------t~gQSRmwIP 124 (248)
T PF05213_consen 86 MLG-RCYVANVKGVLS----------------LHDKIVNVFRKKGI-------TFGQSRMWIP 124 (248)
T ss_pred eec-cEEEEecccHHH----------------HHHHHHHHHHHhCc-------CcCccccccc
Confidence 322 122223332222 23688999999999 5688877753
No 140
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=32.35 E-value=46 Score=32.39 Aligned_cols=65 Identities=25% Similarity=0.329 Sum_probs=43.2
Q ss_pred HHHHHHHHHcCCeEEeccCCCCccccccccCCCccccCCCcccccccccCCCCCChhHHHHHHHHHHHHhhhcC-CCeEE
Q psy13692 235 KNVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFP-ESYVH 313 (592)
Q Consensus 235 ~eIv~YA~~rGI~VIPEID~PGH~~a~~~~~P~l~~~c~~~~~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~lFp-~~~~H 313 (592)
.+++++++.+|+.+||++.+|.++......-.++. .+.|..+...+ .++++...|| -+.+=
T Consensus 87 ~~~~~~~~~~~~~~i~gv~t~~e~~~A~~~Gad~i--------------~~~p~~~~g~~----~~~~l~~~~~~~p~~a 148 (190)
T cd00452 87 PEVVKAANRAGIPLLPGVATPTEIMQALELGADIV--------------KLFPAEAVGPA----YIKALKGPFPQVRFMP 148 (190)
T ss_pred HHHHHHHHHcCCcEECCcCCHHHHHHHHHCCCCEE--------------EEcCCcccCHH----HHHHHHhhCCCCeEEE
Confidence 57999999999999999998877654433222322 12343333333 4555667776 58999
Q ss_pred ecCC
Q psy13692 314 LGGD 317 (592)
Q Consensus 314 iGGD 317 (592)
+||=
T Consensus 149 ~GGI 152 (190)
T cd00452 149 TGGV 152 (190)
T ss_pred eCCC
Confidence 9885
No 141
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=32.24 E-value=79 Score=32.26 Aligned_cols=92 Identities=23% Similarity=0.288 Sum_probs=59.5
Q ss_pred cCCCCCcccceec---CCCCCCCHHHHHHHHHHHhh---CCCcEEEEEeecCCc--c-ccccccCCccccCC-------C
Q psy13692 159 DFPQFPHRGLLVD---GSRHYLPIKAIKKQLDIMSY---NKLNVLHWHLVDDQS--F-PYESKKFPSLSLKG-------A 222 (592)
Q Consensus 159 D~P~f~~RGlmLD---~sR~f~~v~~ik~~Id~Ma~---~KlN~lHwHltDdqs--f-p~e~~~~P~Lt~~G-------a 222 (592)
+.=+-.|+|++|- .+|.++|+...+..|..+.. .++| .|.-++|..- | ..+.-..-.|--.| -
T Consensus 50 el~kkGy~g~llSGGm~srg~VPl~kf~d~lK~lke~~~l~in-aHvGfvdE~~~eklk~~~vdvvsLDfvgDn~vIk~v 128 (275)
T COG1856 50 ELEKKGYEGCLLSGGMDSRGKVPLWKFKDELKALKERTGLLIN-AHVGFVDESDLEKLKEELVDVVSLDFVGDNDVIKRV 128 (275)
T ss_pred HHHhcCceeEEEeCCcCCCCCccHHHHHHHHHHHHHhhCeEEE-EEeeeccHHHHHHHHHhcCcEEEEeecCChHHHHHH
Confidence 3345578999986 47999999998888888875 4566 6888887211 1 00000000000001 0
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCCeEEeccC
Q psy13692 223 FGPDAIYTEKMIKNVIEYARLRGIRVIPEID 253 (592)
Q Consensus 223 y~p~~~YT~edi~eIv~YA~~rGI~VIPEID 253 (592)
|. ...|.+|.-..+.+-++.||+|+|-|=
T Consensus 129 y~--l~ksv~dyl~~l~~L~e~~irvvpHit 157 (275)
T COG1856 129 YK--LPKSVEDYLRSLLLLKENGIRVVPHIT 157 (275)
T ss_pred Hc--CCccHHHHHHHHHHHHHcCceeceeEE
Confidence 11 345788999999999999999999984
No 142
>PRK07550 hypothetical protein; Provisional
Probab=31.49 E-value=1.5e+02 Score=31.70 Aligned_cols=23 Identities=26% Similarity=0.638 Sum_probs=20.7
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VI 249 (592)
..++.+++++|++.|+++|+-||
T Consensus 178 ~~~~~~~~~~i~~~~~~~~~~iI 200 (386)
T PRK07550 178 VVYPPELLHELYDLARRHGIALI 200 (386)
T ss_pred cccCHHHHHHHHHHHHHcCeEEE
Confidence 45899999999999999999776
No 143
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=31.32 E-value=54 Score=27.33 Aligned_cols=37 Identities=22% Similarity=0.482 Sum_probs=26.2
Q ss_pred CcHHHHHHHHHHHHHcCCeEEeccCCCCccccccccCCCc
Q psy13692 229 YTEKMIKNVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQI 268 (592)
Q Consensus 229 YT~edi~eIv~YA~~rGI~VIPEID~PGH~~a~~~~~P~l 268 (592)
+-..=++..++||+++|.+|+|.= .=+..|++.+|++
T Consensus 39 ia~~L~~~~l~~a~~~~~kv~p~C---~y~~~~~~~hpey 75 (78)
T PF14542_consen 39 IAKKLVEAALDYARENGLKVVPTC---SYVAKYFRRHPEY 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEETS---HHHHHHHHH-GGG
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEC---HHHHHHHHhCccc
Confidence 788899999999999999999963 1223455556664
No 144
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=30.67 E-value=90 Score=33.04 Aligned_cols=69 Identities=22% Similarity=0.351 Sum_probs=42.5
Q ss_pred CCCC-C--HHH-HHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 174 RHYL-P--IKA-IKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 174 R~f~-~--v~~-ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VI 249 (592)
||-+ | ++. -|.+++.+|.+=-|-.-.-+-+.--=-|....||+++ ...|.+|+.+.++||++.|++-+
T Consensus 261 RHLVlPghlecCTkpI~~wiae~~g~~~~vNiM~QY~P~ykA~eypeI~--------R~lt~eE~e~a~~~a~~~gl~~~ 332 (335)
T COG1313 261 RHLVLPGHLECCTKPILRWIAENLGNDVRVNIMFQYRPEYKAEEYPEIN--------RRLTREEYEKALEYAEKLGLTNI 332 (335)
T ss_pred EEEecCCchhhccHHHHHHHHHhCCCCeeEEehhhccchhhhhhchhhc--------ccCCHHHHHHHHHHHHHcCCcee
Confidence 6653 3 444 5667777776544322222222100013345678886 34899999999999999999865
Q ss_pred e
Q psy13692 250 P 250 (592)
Q Consensus 250 P 250 (592)
.
T Consensus 333 ~ 333 (335)
T COG1313 333 L 333 (335)
T ss_pred e
Confidence 3
No 145
>PRK08361 aspartate aminotransferase; Provisional
Probab=30.65 E-value=1.6e+02 Score=31.61 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.6
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VI 249 (592)
..++.+++++|++.|++++|-||
T Consensus 181 ~~~~~~~~~~l~~~~~~~~~~ii 203 (391)
T PRK08361 181 ATLDKEVAKAIADIAEDYNIYIL 203 (391)
T ss_pred cCcCHHHHHHHHHHHHHcCeEEE
Confidence 46899999999999999999776
No 146
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=30.17 E-value=4.2e+02 Score=28.33 Aligned_cols=114 Identities=15% Similarity=0.223 Sum_probs=69.8
Q ss_pred CCCCHHHHHHHHHHHhhCCCcEEEEEeecC-----CccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 175 HYLPIKAIKKQLDIMSYNKLNVLHWHLVDD-----QSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 175 ~f~~v~~ik~~Id~Ma~~KlN~lHwHltDd-----qsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VI 249 (592)
+|.+-+.++++++.|...++.+=.+++-++ ..|.+.-+.||+. ..+++|+..+++||+|+
T Consensus 19 ~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp---------------~~~~mi~~L~~~G~k~~ 83 (339)
T cd06602 19 GYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMDRRRDFTLDPVRFPGL---------------KMPEFVDELHANGQHYV 83 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcceEEECcccccCccceecccccCCCc---------------cHHHHHHHHHHCCCEEE
Confidence 456889999999999999988666665322 2233333334432 22888999999999999
Q ss_pred eccCCCCccccc-cccCC--------CccccCCC-cc------cccccccCCCCCChhHHHHHHHHHHHHhhh
Q psy13692 250 PEIDTPGHTDSM-EPGMP--------QIHCHCPH-RV------EGKTFVGPLDPTKNVTLDFVRDLFTELGQR 306 (592)
Q Consensus 250 PEID~PGH~~a~-~~~~P--------~l~~~c~~-~~------~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~l 306 (592)
+-|+ |+-...- ...++ ++...-.+ .+ .|. ...+|-+||++.+.-.+.++++..-
T Consensus 84 ~~i~-P~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~--~~~~Dftnp~a~~ww~~~~~~~~~~ 153 (339)
T cd06602 84 PILD-PAISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGY--TVFPDFLNPNTQEWWTDEIKDFHDQ 153 (339)
T ss_pred EEEe-CccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCC--CcCcCCCCHHHHHHHHHHHHHHHhc
Confidence 9886 5433110 00111 11100000 00 121 2458999999999999888887654
No 147
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=29.81 E-value=49 Score=36.09 Aligned_cols=26 Identities=31% Similarity=0.618 Sum_probs=23.8
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEe-cc
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVIP-EI 252 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VIP-EI 252 (592)
.++|++|++.|.+.|+++||+||- ||
T Consensus 173 rvwt~eeL~~i~elc~kh~v~VISDEI 199 (388)
T COG1168 173 RVWTKEELRKIAELCLRHGVRVISDEI 199 (388)
T ss_pred ccccHHHHHHHHHHHHHcCCEEEeecc
Confidence 689999999999999999999995 44
No 148
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=29.77 E-value=2.5e+02 Score=30.13 Aligned_cols=123 Identities=16% Similarity=0.252 Sum_probs=75.3
Q ss_pred EEEeecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEeccCCCCccc-----c------------
Q psy13692 198 HWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVIPEIDTPGHTD-----S------------ 260 (592)
Q Consensus 198 HwHltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VIPEID~PGH~~-----a------------ 260 (592)
=+-++|...-+-++++.|.. | .||-+++.+.++-+.+.||+=|--+-.|.+-. +
T Consensus 34 PiFV~eg~~~~~~I~smPg~-----~----r~s~d~l~~~v~~~~~~Gi~av~LFgv~~~Kd~~gs~A~~~~g~v~rair 104 (323)
T PRK09283 34 PLFVVEGENEREEIPSMPGV-----Y----RLSIDLLVKEAEEAVELGIPAVALFGVPELKDEDGSEAYNPDGLVQRAIR 104 (323)
T ss_pred eEEEecCCCCccccCCCCCc-----e----eeCHHHHHHHHHHHHHCCCCEEEEeCcCCCCCcccccccCCCCHHHHHHH
Confidence 34456666656667777755 3 38999999999999999999888877765521 1
Q ss_pred -ccccCCCcccc---CCC--cccccccccCCCC---CChhHHHHHHHHHHHHhhhcCCCeEEecCCccccccc--cCCHH
Q psy13692 261 -MEPGMPQIHCH---CPH--RVEGKTFVGPLDP---TKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCW--EQNPE 329 (592)
Q Consensus 261 -~~~~~P~l~~~---c~~--~~~g~~~~~~lnp---~~~~ty~fl~~ll~Ev~~lFp~~~~HiGGDEv~~~~w--~~~p~ 329 (592)
+.+.+|++... |.. ...|. +|.++. .|++|.+.|.++=--.++ -|+|=|.-+.- ..-..
T Consensus 105 ~iK~~~p~l~vi~DVcLc~YT~hGH--cGil~~g~idND~Tl~~L~~~Al~~A~--------AGaDiVAPSdMMDGrV~a 174 (323)
T PRK09283 105 AIKKAFPELGVITDVCLDEYTSHGH--CGILEDGYVDNDETLELLAKQALSQAE--------AGADIVAPSDMMDGRVGA 174 (323)
T ss_pred HHHHhCCCcEEEEeeeccCCCCCCc--eecccCCcCcCHHHHHHHHHHHHHHHH--------hCCCEEEcccccccHHHH
Confidence 12245776532 222 33454 666653 488999887765333332 36665543211 12235
Q ss_pred HHHHHHhCCC
Q psy13692 330 IKAFMSTRQW 339 (592)
Q Consensus 330 ~~~~m~~~g~ 339 (592)
+++.+.++|+
T Consensus 175 IR~aLd~~g~ 184 (323)
T PRK09283 175 IREALDEAGF 184 (323)
T ss_pred HHHHHHHCCC
Confidence 6677777776
No 149
>KOG0462|consensus
Probab=29.41 E-value=43 Score=38.25 Aligned_cols=31 Identities=35% Similarity=0.574 Sum_probs=24.9
Q ss_pred cHHHHHHHHHHHHHcCCeEE----------------eccCCCCcccc
Q psy13692 230 TEKMIKNVIEYARLRGIRVI----------------PEIDTPGHTDS 260 (592)
Q Consensus 230 T~edi~eIv~YA~~rGI~VI----------------PEID~PGH~~a 260 (592)
-++++-+=.+.-|+|||+|- =-||||||+..
T Consensus 92 ~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF 138 (650)
T KOG0462|consen 92 GQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF 138 (650)
T ss_pred chhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence 46777777788899999874 46899999974
No 150
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=28.91 E-value=1.1e+02 Score=30.68 Aligned_cols=68 Identities=9% Similarity=0.065 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 179 IKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 179 v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VI 249 (592)
.+.|+++++.++..+ ++-++++..-+ ++...+|..|...-..+.....|.++++++.+++++.|++++
T Consensus 178 ~~ei~~l~~~l~~l~-~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~g~~~~ 245 (246)
T PRK11145 178 DDSAHRLGEFIKDMG-NIEKIELLPYH--ELGKHKWEAMGEEYKLDGVKPPSKETMERVKGILEQYGHKVM 245 (246)
T ss_pred HHHHHHHHHHHHhcC-CcceEEEecCC--ccchhHHHHcCCcccccCCCCCCHHHHHHHHHHHHHcCCccc
Confidence 568888888887654 33444443221 111111111110000011244799999999999999999874
No 151
>TIGR01866 cas_Csn2 CRISPR-associated protein, Csn2 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas loci. The species range so far for this subtype is animal pathogens and commensals only. This protein is present in some but not all NMENI CRISPR/Cas loci.
Probab=28.80 E-value=1e+02 Score=31.06 Aligned_cols=64 Identities=13% Similarity=0.190 Sum_probs=50.6
Q ss_pred CCcccceecCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHH
Q psy13692 163 FPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYAR 242 (592)
Q Consensus 163 f~~RGlmLD~sR~f~~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~ 242 (592)
|..=|+.+|+...- +.+-|.++++......-+.+-.-. .+ + .++|++|+.++.+|+.
T Consensus 132 ~Ka~gik~e~~~~~-~~eki~~~lki~~~l~~kki~ifv--------------Nl---~-----~YLt~eei~el~~~i~ 188 (216)
T TIGR01866 132 IKALGIKFETQSDT-LLEKCLEILQIFKELTKKKLFIFI--------------NS---G-----AFLTKDELAELQKFIS 188 (216)
T ss_pred HHhcCeeeeeccCc-HHHHHHHHHHHHHHHhcCcEEEEE--------------cH---H-----HhCCHHHHHHHHHHHH
Confidence 56789999998886 888888888888777666555421 11 2 4589999999999999
Q ss_pred HcCCeEE
Q psy13692 243 LRGIRVI 249 (592)
Q Consensus 243 ~rGI~VI 249 (592)
...+.|+
T Consensus 189 ~~~~~vl 195 (216)
T TIGR01866 189 YTKLTVL 195 (216)
T ss_pred HhcccEE
Confidence 9999887
No 152
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=28.69 E-value=48 Score=35.28 Aligned_cols=127 Identities=15% Similarity=0.165 Sum_probs=70.4
Q ss_pred CCCeEEEEeCCeEEEEecChhhHHHHHHHHhhCCCCCCCCCceeeeeeEEecCCCC-CcccceecCCCCCCCHHHHHHHH
Q psy13692 108 DEKYTLEIKNSSCLLTSQSIWGILRGLETFSQLPIPAPNGDQLIIRVQTIEDFPQF-PHRGLLVDGSRHYLPIKAIKKQL 186 (592)
Q Consensus 108 ~EsY~L~I~~~~i~I~a~t~~Ga~~gl~TL~QL~~~~~~~~~~~i~~~~I~D~P~f-~~RGlmLD~sR~f~~v~~ik~~I 186 (592)
.+-|.+.++.+.|.|+-.+..+.||...-|.--. .+|. ...+-.-=+|.| .|-++.||- -+|++..-=.+++
T Consensus 88 ~~~ygwnit~~NIalTnGSQs~fFYlfNlF~G~~----sdG~--~k~illPLaPeYiGY~d~~l~~-d~fVs~kP~iel~ 160 (417)
T COG3977 88 RREYGWNITAQNIALTNGSQSAFFYLFNLFAGRR----SDGT--EKKILLPLAPEYIGYADAGLEE-DLFVSAKPNIELL 160 (417)
T ss_pred HHHhCCCCccceeeecCCccchHHHHHHHhcCcc----CCCc--ceeEeeccChhhccccccccCc-cceeeccCCcccc
Confidence 5778999999999999999999999887765322 1221 122222233443 244444442 2344321111111
Q ss_pred H-HHhhCCCcEEEEEeecCCccccccccCCccccCCCCCC-CCCCcHHHHHHHHHHHHHcCCeEEe
Q psy13692 187 D-IMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGP-DAIYTEKMIKNVIEYARLRGIRVIP 250 (592)
Q Consensus 187 d-~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p-~~~YT~edi~eIv~YA~~rGI~VIP 250 (592)
+ ..-.|....=|+|+.++-+--.. +-|- +| ..++|.+|++.|.+.|+.+||-+|-
T Consensus 161 ~~g~FKY~vDF~~l~i~e~~g~ic~--SRPt-------NPTGNVlTdeE~~kldalA~~~giPliI 217 (417)
T COG3977 161 PAGQFKYHVDFEHLHIGESTGAICV--SRPT-------NPTGNVLTDEELAKLDALARQHGIPLII 217 (417)
T ss_pred cccceeeccCHHHcccccccceEEe--cCCC-------CCCCCcccHHHHHHHHHHhhhcCCcEEE
Confidence 1 01112222335555443331111 1111 12 2789999999999999999999984
No 153
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=28.55 E-value=2.8e+02 Score=29.62 Aligned_cols=122 Identities=17% Similarity=0.256 Sum_probs=72.6
Q ss_pred EEeecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEeccCCCCccc-----c-------------
Q psy13692 199 WHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVIPEIDTPGHTD-----S------------- 260 (592)
Q Consensus 199 wHltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VIPEID~PGH~~-----a------------- 260 (592)
+-++|...-+-++++.|.. | .||.+.+.+.++-+.+.||+-|--+-.|.|-. +
T Consensus 27 lFV~eg~~~~~~I~sMPG~-----~----r~s~d~l~~~~~~~~~~Gi~~v~LFgv~~~Kd~~gs~A~~~~g~v~~air~ 97 (314)
T cd00384 27 LFVVEGIDEKEEISSMPGV-----Y----RLSVDSLVEEAEELADLGIRAVILFGIPEHKDEIGSEAYDPDGIVQRAIRA 97 (314)
T ss_pred EEEecCCCCccccCCCCCc-----e----eeCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCcccccCCCChHHHHHHH
Confidence 3445555556666677654 3 38999999999999999999988887775522 1
Q ss_pred ccccCCCcccc---CCC--cccccccccCCC---CCChhHHHHHHHHHHHHhhhcCCCeEEecCCcccccccc--CCHHH
Q psy13692 261 MEPGMPQIHCH---CPH--RVEGKTFVGPLD---PTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWE--QNPEI 330 (592)
Q Consensus 261 ~~~~~P~l~~~---c~~--~~~g~~~~~~ln---p~~~~ty~fl~~ll~Ev~~lFp~~~~HiGGDEv~~~~w~--~~p~~ 330 (592)
..+..|++... |.. ...|. +|.++ ..|++|.+.|.++=--. ---|+|=|.-+.-. .-..+
T Consensus 98 iK~~~p~l~vi~DvcLc~YT~hGH--cGil~~~~idND~Tl~~L~k~Als~--------A~AGADiVAPSdMMDGrV~aI 167 (314)
T cd00384 98 IKEAVPELVVITDVCLCEYTDHGH--CGILKDDYVDNDATLELLAKIAVSH--------AEAGADIVAPSDMMDGRVAAI 167 (314)
T ss_pred HHHhCCCcEEEEeeeccCCCCCCc--ceeccCCcCccHHHHHHHHHHHHHH--------HHcCCCeeecccccccHHHHH
Confidence 11245776532 222 33455 66664 45888888776653222 23466665432211 12245
Q ss_pred HHHHHhCCC
Q psy13692 331 KAFMSTRQW 339 (592)
Q Consensus 331 ~~~m~~~g~ 339 (592)
++.+.++|+
T Consensus 168 R~aLd~~g~ 176 (314)
T cd00384 168 REALDEAGF 176 (314)
T ss_pred HHHHHHCCC
Confidence 555556665
No 154
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=28.44 E-value=81 Score=33.14 Aligned_cols=24 Identities=21% Similarity=0.319 Sum_probs=20.0
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEe
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVIP 250 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VIP 250 (592)
..|+.+++++|++.|+++|+-||-
T Consensus 163 ~~~~~~~l~~l~~~~~~~~~~ii~ 186 (363)
T PF00155_consen 163 SVLSLEELRELAELAREYNIIIIV 186 (363)
T ss_dssp BB--HHHHHHHHHHHHHTTSEEEE
T ss_pred cccccccccchhhhhcccccceee
Confidence 468999999999999999999884
No 155
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=28.11 E-value=1.9e+02 Score=31.12 Aligned_cols=23 Identities=9% Similarity=0.439 Sum_probs=21.0
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VI 249 (592)
..++.+++++|++.|+++|+-||
T Consensus 183 ~~~~~~~~~~l~~~a~~~~~~ii 205 (401)
T TIGR01264 183 SVFSRQHLEEILAVAERQCLPII 205 (401)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEE
Confidence 56899999999999999999877
No 156
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=27.58 E-value=2.5e+02 Score=29.08 Aligned_cols=110 Identities=17% Similarity=0.244 Sum_probs=62.4
Q ss_pred CCCHHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEeccCCC
Q psy13692 176 YLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVIPEIDTP 255 (592)
Q Consensus 176 f~~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VIPEID~P 255 (592)
.+|.+.+++-|..|....+|.+=.|- +|. + .++.+.|.+.||-|+.|+...
T Consensus 32 a~~~~~~~~d~~l~k~~G~N~iR~~h------------~p~-------------~----~~~~~~cD~~GilV~~e~~~~ 82 (298)
T PF02836_consen 32 AMPDEAMERDLELMKEMGFNAIRTHH------------YPP-------------S----PRFYDLCDELGILVWQEIPLE 82 (298)
T ss_dssp ---HHHHHHHHHHHHHTT-SEEEETT------------S---------------S----HHHHHHHHHHT-EEEEE-S-B
T ss_pred cCCHHHHHHHHHHHHhcCcceEEccc------------ccC-------------c----HHHHHHHhhcCCEEEEecccc
Confidence 36789999999999999999887641 221 1 567889999999999999887
Q ss_pred Cccccccc-------cCCCcccc-----------CCCcccccccccCCCCCChhHHHHHHHHHHHHhhhcCCCeEEecCC
Q psy13692 256 GHTDSMEP-------GMPQIHCH-----------CPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGD 317 (592)
Q Consensus 256 GH~~a~~~-------~~P~l~~~-----------c~~~~~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~lFp~~~~HiGGD 317 (592)
+|...-.. ..|+.... ..+.|+-- .++.-|=. ....+++.|.+-+.++=|+..++.+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi-~W~~gNE~--~~~~~~~~l~~~~k~~DptRpv~~~~~ 159 (298)
T PF02836_consen 83 GHGSWQDFGNCNYDADDPEFRENAEQELREMVRRDRNHPSII-MWSLGNES--DYREFLKELYDLVKKLDPTRPVTYASN 159 (298)
T ss_dssp SCTSSSSTSCTSCTTTSGGHHHHHHHHHHHHHHHHTT-TTEE-EEEEEESS--HHHHHHHHHHHHHHHH-TTSEEEEETG
T ss_pred ccCccccCCccccCCCCHHHHHHHHHHHHHHHHcCcCcCchh-eeecCccC--ccccchhHHHHHHHhcCCCCceeeccc
Confidence 76532100 11221110 01112100 12222222 566777888877777778888887777
No 157
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=27.48 E-value=1e+02 Score=31.52 Aligned_cols=61 Identities=11% Similarity=0.136 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEecc
Q psy13692 179 IKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVIPEI 252 (592)
Q Consensus 179 v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VIPEI 252 (592)
++.+++.|+.++..+.+++.++-.+ .. +...... . .-...+-+++++++|+++||+|.-|-
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~~-----~~---~~~~~~~-~----~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 93 LEIMEKAIQLARDLGIRTIQLAGYD-----VY---YEEHDEE-T----RRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCcc-----cc---cCcCCHH-H----HHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 6789999999999999998775311 00 0000000 0 11355779999999999999999994
No 158
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=27.32 E-value=1.5e+02 Score=30.18 Aligned_cols=63 Identities=19% Similarity=0.287 Sum_probs=44.7
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEeccCCCCccccccccCCCccccCCCcccccccccCCCCCChhHHHHHHHHHHHHhhh
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQR 306 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VIPEID~PGH~~a~~~~~P~l~~~c~~~~~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~l 306 (592)
+.|.-+....++++|+++||+|- ||+.-|....|.... .+. .++..+.+.+-+++++.-
T Consensus 11 G~~n~~~~D~~~~~a~~~gi~v~------gH~l~W~~~~P~W~~-------------~~~--~~~~~~~~~~~i~~v~~r 69 (254)
T smart00633 11 GQFNFSGADAIVNFAKENGIKVR------GHTLVWHSQTPDWVF-------------NLS--KETLLARLENHIKTVVGR 69 (254)
T ss_pred CccChHHHHHHHHHHHHCCCEEE------EEEEeecccCCHhhh-------------cCC--HHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999995 898777554443321 111 345667777777787777
Q ss_pred cCCC
Q psy13692 307 FPES 310 (592)
Q Consensus 307 Fp~~ 310 (592)
|.+.
T Consensus 70 y~g~ 73 (254)
T smart00633 70 YKGK 73 (254)
T ss_pred hCCc
Confidence 7654
No 159
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=27.02 E-value=4.3e+02 Score=29.49 Aligned_cols=32 Identities=19% Similarity=0.153 Sum_probs=26.7
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEeccCCCCccc
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVIPEIDTPGHTD 259 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VIPEID~PGH~~ 259 (592)
..||.+.-++|++.|+++++-|| |=|.-|...
T Consensus 242 ~tms~~rR~~Ll~lA~~~~~~II-EDD~y~el~ 273 (459)
T COG1167 242 VTMSLERRKALLALAEKYDVLII-EDDYYGELR 273 (459)
T ss_pred CccCHHHHHHHHHHHHHcCCeEE-eeCcchhhh
Confidence 57999999999999999999888 666665543
No 160
>PRK01060 endonuclease IV; Provisional
Probab=26.98 E-value=2e+02 Score=29.25 Aligned_cols=59 Identities=14% Similarity=0.050 Sum_probs=44.6
Q ss_pred cceecCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCC
Q psy13692 167 GLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGI 246 (592)
Q Consensus 167 GlmLD~sR~f~~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI 246 (592)
|+|..+.+. +.+.|+.++...+..+.+-+.....|. ...+|.++++++-+.++++||
T Consensus 5 g~~~~~~~~------~~~~l~~~~~~G~d~vEl~~~~p~~~~-----------------~~~~~~~~~~~lk~~~~~~gl 61 (281)
T PRK01060 5 GAHVSAAGG------LEGAVAEAAEIGANAFMIFTGNPQQWK-----------------RKPLEELNIEAFKAACEKYGI 61 (281)
T ss_pred EEeeecCCC------HHHHHHHHHHcCCCEEEEECCCCCCCc-----------------CCCCCHHHHHHHHHHHHHcCC
Confidence 555555544 788999999999999998664322221 123799999999999999999
Q ss_pred eE
Q psy13692 247 RV 248 (592)
Q Consensus 247 ~V 248 (592)
++
T Consensus 62 ~~ 63 (281)
T PRK01060 62 SP 63 (281)
T ss_pred CC
Confidence 95
No 161
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=26.79 E-value=4e+02 Score=25.58 Aligned_cols=71 Identities=14% Similarity=0.241 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEeccC
Q psy13692 176 YLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVIPEID 253 (592)
Q Consensus 176 f~~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VIPEID 253 (592)
=++.+...+.+..|...+||+|-+=-+-..++.+-...+ . .+.| ..=..+=|..+++.|.+.|+.|+.-+.
T Consensus 16 ~~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~---~-~~~~---~~~~~d~l~~~L~~A~~~Gmkv~~Gl~ 86 (166)
T PF14488_consen 16 NWTPAQWREEFRAMKAIGIDTLILQWTGYGGFAFYPSKL---S-PGGF---YMPPVDLLEMILDAADKYGMKVFVGLY 86 (166)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEEeecCCcccCCccc---c-Cccc---cCCcccHHHHHHHHHHHcCCEEEEeCC
Confidence 367888999999999999998876544433332211111 0 0111 001345589999999999999997664
No 162
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=26.55 E-value=6.3e+02 Score=27.04 Aligned_cols=136 Identities=15% Similarity=0.166 Sum_probs=72.1
Q ss_pred CCCCcccceecCCC-CCCCHHHHHHHHHHHhhCCCcEEEEEeecCCccccccc--cCCccc---cCC----CCCCCCCCc
Q psy13692 161 PQFPHRGLLVDGSR-HYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESK--KFPSLS---LKG----AFGPDAIYT 230 (592)
Q Consensus 161 P~f~~RGlmLD~sR-~f~~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~--~~P~Lt---~~G----ay~p~~~YT 230 (592)
|++.+ |+.. +| .|.+-+.++++++.|..+++.+=-+||-| |--+.. .+..+- ..| .|.+ ..|-
T Consensus 7 P~wal-G~~~--sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~---W~~~~~~~~w~d~~y~~~~~~~~~~~~~-~~f~ 79 (340)
T cd06597 7 PKWAF-GLWM--SANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQ---WSDEATFYVFNDAQYTPKDGGAPLSYDD-FSFP 79 (340)
T ss_pred chHHh-hhhh--hccCCCCHHHHHHHHHHHHHcCCCeeEEEEec---ccCcceeeeeccchhcccccCCcceecc-cccC
Confidence 45554 4443 34 45678999999999999999865555532 211100 000000 000 0110 0011
Q ss_pred H----HHHHHHHHHHHHcCCeEE----eccCCCCcc--cc---cccc-CCCccccCCC-cc------c-ccccccCCCCC
Q psy13692 231 E----KMIKNVIEYARLRGIRVI----PEIDTPGHT--DS---MEPG-MPQIHCHCPH-RV------E-GKTFVGPLDPT 288 (592)
Q Consensus 231 ~----edi~eIv~YA~~rGI~VI----PEID~PGH~--~a---~~~~-~P~l~~~c~~-~~------~-g~~~~~~lnp~ 288 (592)
. -|.+++|+..+++|++|+ |-|+.=-|. .. ...+ .-++...-.+ .+ + |. ...+|.+
T Consensus 80 ~~~~FPdp~~mi~~Lh~~G~kv~l~v~P~i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~--~~~~Dft 157 (340)
T cd06597 80 VEGRWPNPKGMIDELHEQGVKVLLWQIPIIKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPD--SLMLDFT 157 (340)
T ss_pred ccccCCCHHHHHHHHHHCCCEEEEEecCccccccccccccchhHHHHHHCCEEEEcCCCCccccccccCCC--ceeecCC
Confidence 1 267999999999999996 777631111 00 0000 0011111000 00 1 11 3469999
Q ss_pred ChhHHHHHHHHHHHHhh
Q psy13692 289 KNVTLDFVRDLFTELGQ 305 (592)
Q Consensus 289 ~~~ty~fl~~ll~Ev~~ 305 (592)
||++.+.-.+.++++.+
T Consensus 158 np~a~~Ww~~~~~~~~~ 174 (340)
T cd06597 158 NPEAAQWWMEKRRYLVD 174 (340)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999998888888764
No 163
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=26.34 E-value=2.9e+02 Score=29.18 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=19.7
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VI 249 (592)
....+++++++-+++++.||+++
T Consensus 86 ~~~~~~~~~~~g~~~~~~~irls 108 (303)
T PRK02308 86 IEPFKEELREIGEFIKEHNIRLS 108 (303)
T ss_pred CCCCHHHHHHHHHHHHHcCCCee
Confidence 34789999999999999998765
No 164
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=26.16 E-value=8e+02 Score=26.34 Aligned_cols=119 Identities=18% Similarity=0.117 Sum_probs=71.4
Q ss_pred HHHHHHHHHHhhCCCcEEEEEeecCCcc-ccccc-cCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEeccCCCCc
Q psy13692 180 KAIKKQLDIMSYNKLNVLHWHLVDDQSF-PYESK-KFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVIPEIDTPGH 257 (592)
Q Consensus 180 ~~ik~~Id~Ma~~KlN~lHwHltDdqsf-p~e~~-~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VIPEID~PGH 257 (592)
..+-+.+...+.+|||.|-.-+.||-|= +|.++ .+|.-+ ++-+ .-.||+-+++-|++.||-+|.-|-++--
T Consensus 77 k~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~--~sv~-----~f~Di~~~iKkaKe~giY~IARiVvFKD 149 (400)
T COG1306 77 KRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYT--KSVN-----KFKDIEPVIKKAKENGIYAIARIVVFKD 149 (400)
T ss_pred hHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhh--hccc-----cccccHHHHHHHHhcCeEEEEEEEEeee
Confidence 4455677788999999999999998662 22211 122111 2211 2468999999999999999988855543
Q ss_pred cccccccCCC-ccccCCCccccc----------ccccCCCCCChhHHHHHHHHHHHHhhh
Q psy13692 258 TDSMEPGMPQ-IHCHCPHRVEGK----------TFVGPLDPTKNVTLDFVRDLFTELGQR 306 (592)
Q Consensus 258 ~~a~~~~~P~-l~~~c~~~~~g~----------~~~~~lnp~~~~ty~fl~~ll~Ev~~l 306 (592)
+-- .+..|. +..-....||.. ....-.||-++.+.+.--.|-+|..+.
T Consensus 150 ~~l-~~~n~fk~av~~~gKpw~~~~ngaLrKe~~~ehWVd~y~~~~WeYNvtIAKEa~~f 208 (400)
T COG1306 150 TIL-AKENPFKIAVYKDGKPWKAFTNGALRKESDGEHWVDAYDKNLWEYNVTIAKEAAKF 208 (400)
T ss_pred eeE-EeecCceEEEEcCCCcchhhhcccccccccceeeecccchhhhhhhHHHHHHHHHc
Confidence 321 011111 110000112211 001247888899999999999998763
No 165
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=26.11 E-value=2.3e+02 Score=31.24 Aligned_cols=69 Identities=26% Similarity=0.343 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCC-------CCCcHHHHHHHHHHHHHcCCeEEec
Q psy13692 179 IKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPD-------AIYTEKMIKNVIEYARLRGIRVIPE 251 (592)
Q Consensus 179 v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~-------~~YT~edi~eIv~YA~~rGI~VIPE 251 (592)
+.-|.+-+|.+...+++.+++=- -++.......|... .+=|.+|++++++-|.+|||+||..
T Consensus 28 l~Gi~~~LdYl~~LGv~aiwl~P-----------i~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D 96 (505)
T COG0366 28 LKGITEKLDYLKELGVDAIWLSP-----------IFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILD 96 (505)
T ss_pred HHhHHHhhhHHHHhCCCEEEeCC-----------CCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 55566889999999999998732 22221111222111 3339999999999999999999999
Q ss_pred cCCCCccc
Q psy13692 252 IDTPGHTD 259 (592)
Q Consensus 252 ID~PGH~~ 259 (592)
+- .=|++
T Consensus 97 ~V-~NH~s 103 (505)
T COG0366 97 LV-FNHTS 103 (505)
T ss_pred ec-cCcCC
Confidence 84 66765
No 166
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=25.95 E-value=1.6e+02 Score=29.51 Aligned_cols=80 Identities=19% Similarity=0.216 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHhhCCCcEEEEEeecCCccc---cccccCCccccCCCCCCCCCCcHHHH-----------------HHH
Q psy13692 178 PIKAIKKQLDIMSYNKLNVLHWHLVDDQSFP---YESKKFPSLSLKGAFGPDAIYTEKMI-----------------KNV 237 (592)
Q Consensus 178 ~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp---~e~~~~P~Lt~~Gay~p~~~YT~edi-----------------~eI 237 (592)
+.+...++.+.|...++.++-.-++...... --.+.||++. .|+= .++|.+++ .++
T Consensus 18 ~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~-vGAG---TVl~~~~a~~a~~aGA~FivsP~~~~~v 93 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDAL-IGAG---TVLNPEQLRQAVDAGAQFIVSPGLTPEL 93 (204)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCE-EEEE---eCCCHHHHHHHHHcCCCEEECCCCCHHH
Confidence 7889999999999999999998886655432 1124677654 3431 34444443 478
Q ss_pred HHHHHHcCCeEEeccCCCCccccc
Q psy13692 238 IEYARLRGIRVIPEIDTPGHTDSM 261 (592)
Q Consensus 238 v~YA~~rGI~VIPEID~PGH~~a~ 261 (592)
+++|+++||-+||-+=||......
T Consensus 94 ~~~~~~~~i~~iPG~~TptEi~~A 117 (204)
T TIGR01182 94 AKHAQDHGIPIIPGVATPSEIMLA 117 (204)
T ss_pred HHHHHHcCCcEECCCCCHHHHHHH
Confidence 899999999999999999887543
No 167
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=25.85 E-value=3.7e+02 Score=33.25 Aligned_cols=111 Identities=21% Similarity=0.281 Sum_probs=67.3
Q ss_pred CCCCHHHHHHHHHHHhhCCCcEEEEEeecCC--c---cccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 175 HYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQ--S---FPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 175 ~f~~v~~ik~~Id~Ma~~KlN~lHwHltDdq--s---fp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VI 249 (592)
.|.+-+.++++++.+...++-.=-+|+-.+- + |.+.-+.|| |.+++++.-+++|+++|
T Consensus 196 ~Y~sq~eV~eva~~fre~~IP~DvIwlDidYm~g~~~FTwD~~rFP-----------------dP~~mv~~Lh~~G~kvv 258 (978)
T PLN02763 196 SYESAKRVAEIARTFREKKIPCDVVWMDIDYMDGFRCFTFDKERFP-----------------DPKGLADDLHSIGFKAI 258 (978)
T ss_pred CCCCHHHHHHHHHHHHHcCCCceEEEEehhhhcCCCceeECcccCC-----------------CHHHHHHHHHHCCCEEE
Confidence 4457899999999999998875555553221 1 222222222 45889999999999999
Q ss_pred eccCCCCccccccccCCCccccCCC-----ccccccc--------ccCCCCCChhHHHHHHHHHHHHhh
Q psy13692 250 PEIDTPGHTDSMEPGMPQIHCHCPH-----RVEGKTF--------VGPLDPTKNVTLDFVRDLFTELGQ 305 (592)
Q Consensus 250 PEID~PGH~~a~~~~~P~l~~~c~~-----~~~g~~~--------~~~lnp~~~~ty~fl~~ll~Ev~~ 305 (592)
+-|| ||=.. -..|+.+...+.. ...|.++ ..-.|-+||++.++-.++++++.+
T Consensus 259 ~iid-PgI~~--d~gY~~y~eg~~~~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~d 324 (978)
T PLN02763 259 WMLD-PGIKA--EEGYFVYDSGCENDVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWANLVKDFVS 324 (978)
T ss_pred EEEc-CCCcc--CCCCHHHHhHhhcCeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHHHHHHHHhc
Confidence 9987 64321 0112211100000 0111110 234789999999999999888765
No 168
>PF12971 NAGLU_N: Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain; InterPro: IPR024240 Alpha-N-acetylglucosaminidase, is a lysosomal enzyme required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase (NAGLU) gene can lead to Mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B) characterised by neurological dysfunction but relatively mild somatic manifestations []. The structure shows that the enzyme is composed of three domains. This entry represents the N-terminal domain of Alpha-N-acetylglucosaminidase which has an alpha-beta fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=25.27 E-value=1.1e+02 Score=26.14 Aligned_cols=32 Identities=16% Similarity=0.237 Sum_probs=26.7
Q ss_pred CCCCeEEEE-eCCeEEEEecChhhHHHHHHHHh
Q psy13692 107 MDEKYTLEI-KNSSCLLTSQSIWGILRGLETFS 138 (592)
Q Consensus 107 ~~EsY~L~I-~~~~i~I~a~t~~Ga~~gl~TL~ 138 (592)
..+.|+|+- .++.|.|+|++..-+.+||..-+
T Consensus 30 ~~d~F~l~~~~~gki~I~G~s~vala~Gl~~YL 62 (86)
T PF12971_consen 30 GKDVFELSSADNGKIVIRGNSGVALASGLNWYL 62 (86)
T ss_dssp TBEEEEEEE-SSS-EEEEESSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCeEEEEeCCHHHHHHHHHHHH
Confidence 679999998 78899999999988888887654
No 169
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=24.68 E-value=1.2e+02 Score=33.95 Aligned_cols=55 Identities=9% Similarity=0.157 Sum_probs=35.2
Q ss_pred HHHHHHHhhCC--CcEEEEEeecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHc--CCeEEe
Q psy13692 183 KKQLDIMSYNK--LNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLR--GIRVIP 250 (592)
Q Consensus 183 k~~Id~Ma~~K--lN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~r--GI~VIP 250 (592)
.++|+.|+..+ .+.+|+ ++|+-+-.-|...+ ..||.+++.++++.++++ ||.|-.
T Consensus 255 ~ell~~m~~~~~gc~~l~i--------glQSgsd~vLk~m~-----R~~t~e~~~~~v~~ir~~~pgi~i~~ 313 (455)
T PRK14335 255 DDLIATIAQESRLCRLVHL--------PVQHGSNGVLKRMN-----RSYTREHYLSLVGKLKASIPNVALST 313 (455)
T ss_pred HHHHHHHHhCCCCCCeEEE--------ccCcCCHHHHHHcC-----CCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 57788887753 665554 55543222232222 348999999999999998 665443
No 170
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=24.43 E-value=86 Score=33.73 Aligned_cols=71 Identities=17% Similarity=0.248 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCCeEE-eccCCCCccc-cccccCCCccccCCCccccc-ccccCCCCCChhHHHHHHHHHHHHhhhcC
Q psy13692 235 KNVIEYARLRGIRVI-PEIDTPGHTD-SMEPGMPQIHCHCPHRVEGK-TFVGPLDPTKNVTLDFVRDLFTELGQRFP 308 (592)
Q Consensus 235 ~eIv~YA~~rGI~VI-PEID~PGH~~-a~~~~~P~l~~~c~~~~~g~-~~~~~lnp~~~~ty~fl~~ll~Ev~~lFp 308 (592)
|.|++..|+.||+.| |-+ .||.= ++.+.+|+...... ..|+. .+...|||.+|---++-+..++|..++|.
T Consensus 98 ~kIl~RmreLGm~PVLPaF--~G~VP~~~~~~~P~a~i~~~-~~W~~f~~~~~L~P~dplF~~i~~~F~~~q~~~yG 171 (333)
T PF05089_consen 98 KKILDRMRELGMTPVLPAF--AGHVPRAFKRKYPNANITRQ-GNWNGFCRPYFLDPTDPLFAEIAKLFYEEQIKLYG 171 (333)
T ss_dssp HHHHHHHHHHT-EEEEE----S-EE-TTHHHHSTT--EE----EETTEE--EEE-SS--HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHcCCcccCCCc--CCCCChHHHhcCCCCEEeeC-CCcCCCCCCceeCCCCchHHHHHHHHHHHHHHhcC
Confidence 679999999999854 555 57774 44455777532110 12222 11246999888777788888999999997
No 171
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=24.09 E-value=3.3e+02 Score=29.18 Aligned_cols=91 Identities=12% Similarity=0.254 Sum_probs=59.6
Q ss_pred EEEeecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEeccCCCCcc--------cc---------
Q psy13692 198 HWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVIPEIDTPGHT--------DS--------- 260 (592)
Q Consensus 198 HwHltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VIPEID~PGH~--------~a--------- 260 (592)
=+-++|...-+-++++.|.. | .|+-+.+.+.++-+.+.||+=|--+-.|-|. ++
T Consensus 26 PlFV~eg~~~~~~I~smPG~-----~----r~s~d~l~~~~~~~~~~Gi~~v~LFgv~~~~~Kd~~~gs~a~~~~g~v~~ 96 (320)
T cd04824 26 PIFITDNPDAKQPIDSLPGI-----N----RYGVNRLEEFLRPLVAKGLRSVILFGVPLKPGKDDRSGSAADDEDGPVIQ 96 (320)
T ss_pred eEEEecCCCCccccCCCCCc-----e----eeCHHHHHHHHHHHHHCCCCEEEEeCCCccccCCcCccccccCCCChHHH
Confidence 34455655556667777755 3 3899999999999999999988888777441 11
Q ss_pred ----ccccCCCcccc---CCC--cccccccccCCC----CCChhHHHHHHHH
Q psy13692 261 ----MEPGMPQIHCH---CPH--RVEGKTFVGPLD----PTKNVTLDFVRDL 299 (592)
Q Consensus 261 ----~~~~~P~l~~~---c~~--~~~g~~~~~~ln----p~~~~ty~fl~~l 299 (592)
+.+..|++... |.. ...|. +|.++ ..|++|.+.|.++
T Consensus 97 air~iK~~~pdl~vi~Dvclc~YT~hGH--cGil~~~g~vdND~Tl~~L~k~ 146 (320)
T cd04824 97 AIKLIREEFPELLIACDVCLCEYTSHGH--CGILYEDGTINNEASVKRLAEV 146 (320)
T ss_pred HHHHHHHhCCCcEEEEeeeccCCCCCCc--ceeECCCCcCcCHHHHHHHHHH
Confidence 11235776421 222 33455 66664 5588888877765
No 172
>PRK13309 ureC urease subunit alpha; Reviewed
Probab=24.04 E-value=1.8e+02 Score=33.70 Aligned_cols=74 Identities=16% Similarity=0.098 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCC----CCCCCcHHHHHHHHHHHHHcCCeEEeccCC
Q psy13692 179 IKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFG----PDAIYTEKMIKNVIEYARLRGIRVIPEIDT 254 (592)
Q Consensus 179 v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~----p~~~YT~edi~eIv~YA~~rGI~VIPEID~ 254 (592)
...|+++++.+...-+| +.++... +.-+.....++.+.|+.. ....-+.+.+.++.++|+++|+.|.---|+
T Consensus 179 ~~~i~~~l~~a~~~pvn-~g~~gkg---~~~~~~~l~el~~aGa~gfk~~~d~g~t~~~L~~aLe~A~~~gv~VaiH~d~ 254 (572)
T PRK13309 179 PWNIRQMLRSIEGLPVN-VGILGKG---NSYGRGPLLEQAIAGVAGYKVHEDWGATAAALRHALRVADEVDIQVAVHTDS 254 (572)
T ss_pred HHHHHHHHHHhccCCcC-EEEEcCC---CCCCHHHHHHHHhcCcEEEEecCcCCcCHHHHHHHHHHHHhcCCEEEEeCCc
Confidence 45778888887777788 4455432 211122233444344421 111238999999999999999999998777
Q ss_pred CC
Q psy13692 255 PG 256 (592)
Q Consensus 255 PG 256 (592)
-.
T Consensus 255 ln 256 (572)
T PRK13309 255 LN 256 (572)
T ss_pred cc
Confidence 76
No 173
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=23.96 E-value=1e+02 Score=33.13 Aligned_cols=64 Identities=14% Similarity=0.208 Sum_probs=45.9
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEeccCCCCccccccccCCCccccCCCcccccccccCCCCCChhHHHHHHHHHHHHhhh
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQR 306 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VIPEID~PGH~~a~~~~~P~l~~~c~~~~~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~l 306 (592)
+.|+-+--..|++||+++|.. +=||+--|-...|+.+.. .+-..+.+.+.+++-|.-|+.-
T Consensus 77 G~f~Fe~AD~ia~FAr~h~m~------lhGHtLvW~~q~P~W~~~-------------~e~~~~~~~~~~e~hI~tV~~r 137 (345)
T COG3693 77 GRFNFEAADAIANFARKHNMP------LHGHTLVWHSQVPDWLFG-------------DELSKEALAKMVEEHIKTVVGR 137 (345)
T ss_pred CccCccchHHHHHHHHHcCCe------eccceeeecccCCchhhc-------------cccChHHHHHHHHHHHHHHHHh
Confidence 566777778999999999976 469999997766665421 1223456777777777777777
Q ss_pred cCC
Q psy13692 307 FPE 309 (592)
Q Consensus 307 Fp~ 309 (592)
|++
T Consensus 138 Ykg 140 (345)
T COG3693 138 YKG 140 (345)
T ss_pred ccC
Confidence 764
No 174
>PF09183 DUF1947: Domain of unknown function (DUF1947); InterPro: IPR015266 Members of this entry are a set of hypothetical archaeal proteins. Their exact function has not, as yet, been defined. ; PDB: 1Q7H_A.
Probab=23.59 E-value=53 Score=26.86 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=15.9
Q ss_pred CCCCCCHHHHHHHHHHHhh-CCCc
Q psy13692 173 SRHYLPIKAIKKQLDIMSY-NKLN 195 (592)
Q Consensus 173 sR~f~~v~~ik~~Id~Ma~-~KlN 195 (592)
.|||++-..+|++++.|.. ++++
T Consensus 1 qRH~LSkKe~k~~~~k~~~~ygId 24 (65)
T PF09183_consen 1 QRHFLSKKEIKEIKEKIKEKYGID 24 (65)
T ss_dssp --EE--HHHHHHHHHHHHT-TT--
T ss_pred CcccccHHHHHHHHHHHHHHhCcC
Confidence 4999999999999999998 7665
No 175
>PF04904 NCD1: NAB conserved region 1 (NCD1); InterPro: IPR006988 Nab1 and Nab2 are co-repressors that specifically interact with and repress transcription mediated by the three members of the NGFI-A (Egr-1, Krox24, zif/268) family of eukaryotic (metazoa) transcription factors []. This entry represents the N-terminal NAB domain, which interacts with the EGR1 inhibitory domain (R1) []. It may also mediate multimerisation.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=23.32 E-value=54 Score=27.67 Aligned_cols=49 Identities=20% Similarity=0.363 Sum_probs=34.2
Q ss_pred CCeEEecCCccccccccCCHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhc
Q psy13692 309 ESYVHLGGDEVDFFCWEQNPEIKAFMSTRQWDGPQLQSYYMQYLLKAIKTIR 360 (592)
Q Consensus 309 ~~~~HiGGDEv~~~~w~~~p~~~~~m~~~g~~~~~L~~~f~~~v~~~l~~~G 360 (592)
+.+|-+|||.+.-.|-...++..+-|+=-|++..- .+++|+.+.+.+-.
T Consensus 26 d~fi~~GgDDvqQL~~~~e~eF~eim~lvGM~sKP---LHVrRlqKAL~ew~ 74 (82)
T PF04904_consen 26 DTFIAQGGDDVQQLCEAGEEEFLEIMALVGMASKP---LHVRRLQKALQEWS 74 (82)
T ss_pred HHHHHHcChhHHHHHhcChHHHHHHHHHhCccCcc---HHHHHHHHHHHHHh
Confidence 45778899999887766677888888877883322 25666666666543
No 176
>PRK09148 aminotransferase; Validated
Probab=23.29 E-value=3e+02 Score=29.86 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=21.0
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VI 249 (592)
..|+.+++++|++.|+++|+-||
T Consensus 180 ~~~s~~~l~~l~~~a~~~~~~ii 202 (405)
T PRK09148 180 YVADLDFYKDVVAFAKKHDIIIL 202 (405)
T ss_pred cCCCHHHHHHHHHHHHHcCeEEE
Confidence 57999999999999999998776
No 177
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=22.90 E-value=70 Score=35.90 Aligned_cols=72 Identities=10% Similarity=0.135 Sum_probs=47.5
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEeccCCCCccccccccCCCccccCCCcccccccccCCCCCChhHHHHHHHHHHHHhhh
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQR 306 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VIPEID~PGH~~a~~~~~P~l~~~c~~~~~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~l 306 (592)
..++++++++++++|++.|++++-|+...-.....+.+.+.+.. +|-.|-+|+++--+...++.+.
T Consensus 141 ~~L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~~~a~iiG--------------iNnRdL~t~~vd~~~~~~l~~~ 206 (454)
T PRK09427 141 SVLDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAIALGAKVIG--------------INNRNLRDLSIDLNRTRELAPL 206 (454)
T ss_pred HhCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHhCCCCEEE--------------EeCCCCccceECHHHHHHHHhh
Confidence 56899999999999999999999999766555544444444321 1222334444444556666777
Q ss_pred cCCCeE
Q psy13692 307 FPESYV 312 (592)
Q Consensus 307 Fp~~~~ 312 (592)
+|...+
T Consensus 207 ip~~~~ 212 (454)
T PRK09427 207 IPADVI 212 (454)
T ss_pred CCCCcE
Confidence 775443
No 178
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=22.85 E-value=1e+02 Score=26.76 Aligned_cols=32 Identities=13% Similarity=0.189 Sum_probs=25.5
Q ss_pred CcHHHHHHHHHHHHHcCCeEEeccCCCCcccc
Q psy13692 229 YTEKMIKNVIEYARLRGIRVIPEIDTPGHTDS 260 (592)
Q Consensus 229 YT~edi~eIv~YA~~rGI~VIPEID~PGH~~a 260 (592)
-+.+++.++.+..+++||.+.+....|||..+
T Consensus 71 ~~~~~v~~~~~~l~~~G~~~~~~~~~~~~~~~ 102 (121)
T cd09013 71 SSPEALERRVAALEASGLGIGWIEGDPGHGKA 102 (121)
T ss_pred CCHHHHHHHHHHHHHcCCccccccCCCCCcce
Confidence 47899999999999999998665555666543
No 179
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=22.45 E-value=1.2e+02 Score=26.30 Aligned_cols=29 Identities=17% Similarity=0.291 Sum_probs=23.0
Q ss_pred CcHHHHHHHHHHHHHcCCeEE--eccCCCCc
Q psy13692 229 YTEKMIKNVIEYARLRGIRVI--PEIDTPGH 257 (592)
Q Consensus 229 YT~edi~eIv~YA~~rGI~VI--PEID~PGH 257 (592)
-+.+|+.++.+..+++|+++. |+-..||+
T Consensus 70 ~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~ 100 (122)
T cd07265 70 LDDADLEKLEARLQAYGVAVERIPAGELPGV 100 (122)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEcccCCCCCC
Confidence 478999999999999999987 44444554
No 180
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=22.22 E-value=2.5e+02 Score=29.39 Aligned_cols=116 Identities=20% Similarity=0.313 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHhhCCCcEEEEEeecCC-ccccccccCCccccCC---C-C---CCCCCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 178 PIKAIKKQLDIMSYNKLNVLHWHLVDDQ-SFPYESKKFPSLSLKG---A-F---GPDAIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 178 ~v~~ik~~Id~Ma~~KlN~lHwHltDdq-sfp~e~~~~P~Lt~~G---a-y---~p~~~YT~edi~eIv~YA~~rGI~VI 249 (592)
..+..+.+|+..+..++|++++-+.-.. +..-. ..+|...-.+ . + ++...| -+.+..+|++|.++||.+-
T Consensus 28 ~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~-n~~~~~~~~~~~~~~~d~~~~N~~Y-F~~~d~~i~~a~~~Gi~~~ 105 (289)
T PF13204_consen 28 TREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTP-NRYGFAPFPDEDPGQFDFTRPNPAY-FDHLDRRIEKANELGIEAA 105 (289)
T ss_dssp -HHHHHHHHHHHHHTT--EEEEES-SSSS-B-----TTS-BS-SSTT------TT----H-HHHHHHHHHHHHHTT-EEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCccccccc-ccCCCcCCCCCCccccCCCCCCHHH-HHHHHHHHHHHHHCCCeEE
Confidence 4578899999999999999999876531 11110 1223222111 0 0 111111 2668999999999999885
Q ss_pred eccCCCCcc-----ccccccCCCccccCCCcccccccccCCCCCChhHHHHHHHHHHHHhhhcCCCeEEecCCc
Q psy13692 250 PEIDTPGHT-----DSMEPGMPQIHCHCPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDE 318 (592)
Q Consensus 250 PEID~PGH~-----~a~~~~~P~l~~~c~~~~~g~~~~~~lnp~~~~ty~fl~~ll~Ev~~lFp~~~~HiGGDE 318 (592)
. +|-|- +.|..+ + ..+.+ +....+++-|.+-+.+ ||....-+|||.
T Consensus 106 l---v~~wg~~~~~~~Wg~~-~----------------~~m~~--e~~~~Y~~yv~~Ry~~-~~NviW~l~gd~ 156 (289)
T PF13204_consen 106 L---VPFWGCPYVPGTWGFG-P----------------NIMPP--ENAERYGRYVVARYGA-YPNVIWILGGDY 156 (289)
T ss_dssp E---ESS-HHHHH--------T----------------TSS-H--HHHHHHHHHHHHHHTT--SSEEEEEESSS
T ss_pred E---EEEECCcccccccccc-c----------------cCCCH--HHHHHHHHHHHHHHhc-CCCCEEEecCcc
Confidence 2 23331 122221 1 11221 3344455555554433 466778899998
No 181
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=22.20 E-value=75 Score=37.59 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=33.6
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEeccCCCCccccccccCCCc
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQI 268 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VIPEID~PGH~~a~~~~~P~l 268 (592)
..++++++++++++|++.|++++-|+...-.....+.+-+.+
T Consensus 142 ~~L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~i 183 (695)
T PRK13802 142 AALDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKV 183 (695)
T ss_pred hhcCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCE
Confidence 468899999999999999999999997766665555544444
No 182
>KOG0464|consensus
Probab=22.19 E-value=73 Score=35.22 Aligned_cols=29 Identities=41% Similarity=0.704 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHcCCeE-------------EeccCCCCcccc
Q psy13692 232 KMIKNVIEYARLRGIRV-------------IPEIDTPGHTDS 260 (592)
Q Consensus 232 edi~eIv~YA~~rGI~V-------------IPEID~PGH~~a 260 (592)
+-+.++.+.-|+|||+| |-.||+|||...
T Consensus 74 dtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 74 DTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred chHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 44667778889999998 678999999875
No 183
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=21.05 E-value=1.2e+02 Score=33.80 Aligned_cols=58 Identities=17% Similarity=0.103 Sum_probs=36.9
Q ss_pred HHHHHHHhhCC--CcEEEEEeecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEeccC
Q psy13692 183 KKQLDIMSYNK--LNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVIPEID 253 (592)
Q Consensus 183 k~~Id~Ma~~K--lN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VIPEID 253 (592)
.++|+.|+..+ +|.+|+ ++|+-+-.-|...+ ..||.+++.+.++.+++.|..+.+..|
T Consensus 234 ~ell~~l~~~~~g~~~l~i--------gvQSgs~~vLk~m~-----R~~~~~~~~~~v~~lr~~~~~i~i~~d 293 (440)
T PRK14334 234 DDVIAAMAETPAVCEYIHL--------PVQSGSDRVLRRMA-----REYRREKYLERIAEIREALPDVVLSTD 293 (440)
T ss_pred HHHHHHHHhcCcCCCeEEe--------ccccCCHHHHHHhC-----CCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 56788887754 675555 44542222222211 348999999999999999866554443
No 184
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=21.01 E-value=5.8e+02 Score=26.33 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEeccC
Q psy13692 176 YLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVIPEID 253 (592)
Q Consensus 176 f~~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VIPEID 253 (592)
.+|-+..+..|+......+-.+|+-. + ++ ..+.+++.+++|+++|.+|..-+.
T Consensus 87 ~~p~~~~~~di~~~~~~g~~~iri~~------~--------~~-----------~~~~~~~~i~~ak~~G~~v~~~i~ 139 (275)
T cd07937 87 HYPDDVVELFVEKAAKNGIDIFRIFD------A--------LN-----------DVRNLEVAIKAVKKAGKHVEGAIC 139 (275)
T ss_pred CCCcHHHHHHHHHHHHcCCCEEEEee------c--------CC-----------hHHHHHHHHHHHHHCCCeEEEEEE
Confidence 36667778888888888887766522 1 00 136788999999999998887664
No 185
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.87 E-value=1.3e+02 Score=34.17 Aligned_cols=51 Identities=18% Similarity=0.245 Sum_probs=35.0
Q ss_pred HHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHc
Q psy13692 183 KKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLR 244 (592)
Q Consensus 183 k~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~r 244 (592)
.++|+.|+..+...-|+|+ ++|+-+-.-|...+ ..||.+++.++++.++++
T Consensus 309 deli~~m~~~g~~~~~l~l------gvQSgsd~vLk~M~-----R~~t~e~~~~~v~~lr~~ 359 (509)
T PRK14327 309 DHLIEVLAKGGNLVEHIHL------PVQSGSTEVLKIMA-----RKYTRESYLELVRKIKEA 359 (509)
T ss_pred HHHHHHHHhcCCccceEEe------ccCCCCHHHHHhcC-----CCCCHHHHHHHHHHHHHh
Confidence 5788899887633335555 77764433343322 348999999999999997
No 186
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=20.74 E-value=4.1e+02 Score=27.70 Aligned_cols=63 Identities=11% Similarity=0.179 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHhhCCCcEEEEEeecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEecc
Q psy13692 178 PIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVIPEI 252 (592)
Q Consensus 178 ~v~~ik~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~rGI~VIPEI 252 (592)
+.+.+++.++.+...+.+.+-+.++.....+. ...+...++.++++++++.|+++|+.|.-..
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~------------~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPG------------DPPPDTQFSEEELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCC------------CCCcccCcCHHHHHHHHHHHHHcCCEEEEEe
Confidence 37788899999999999999888743221111 0111135899999999999999999887544
No 187
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=20.37 E-value=1.7e+02 Score=30.16 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=21.7
Q ss_pred CCcHHHHHHHHHHHHHcCCeEEeccC
Q psy13692 228 IYTEKMIKNVIEYARLRGIRVIPEID 253 (592)
Q Consensus 228 ~YT~edi~eIv~YA~~rGI~VIPEID 253 (592)
..+.++..++|+.|+++|.+|+||+-
T Consensus 109 ~l~~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 109 DLPEEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp ---HHHHHHHHHHHCCTTSEEEEEES
T ss_pred eCCHHHHHHHHHHHHHCCCEEeeccc
Confidence 36889999999999999999999994
No 188
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.37 E-value=1.3e+02 Score=33.60 Aligned_cols=54 Identities=17% Similarity=0.112 Sum_probs=37.6
Q ss_pred HHHHHHHhhCC--CcEEEEEeecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHc--CCeEE
Q psy13692 183 KKQLDIMSYNK--LNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLR--GIRVI 249 (592)
Q Consensus 183 k~~Id~Ma~~K--lN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~r--GI~VI 249 (592)
.++|+.|+..+ .+.||+ ++|+-+---|...+ ..||.++++++++.++++ ||.|-
T Consensus 245 ~ell~~~~~~~~g~~~l~i--------glQSgsd~vLk~m~-----R~~t~~~~~~~v~~lr~~~pgi~i~ 302 (445)
T PRK14340 245 ESLVRTIAARPNICNHIHL--------PVQSGSSRMLRRMN-----RGHTIEEYLEKIALIRSAIPGVTLS 302 (445)
T ss_pred HHHHHHHHhCCCCCCeEEE--------CCCcCCHHHHHhcC-----CCCCHHHHHHHHHHHHHhCCCCEEe
Confidence 68889998864 565554 67764333343322 348999999999999998 77654
No 189
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.20 E-value=1.5e+02 Score=32.89 Aligned_cols=53 Identities=21% Similarity=0.208 Sum_probs=34.5
Q ss_pred HHHHHHHhhCC--CcEEEEEeecCCccccccccCCccccCCCCCCCCCCcHHHHHHHHHHHHHc--CCeE
Q psy13692 183 KKQLDIMSYNK--LNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLR--GIRV 248 (592)
Q Consensus 183 k~~Id~Ma~~K--lN~lHwHltDdqsfp~e~~~~P~Lt~~Gay~p~~~YT~edi~eIv~YA~~r--GI~V 248 (592)
.++|+.|+..+ ++.+|+ ++|+-+---|...+ ..||.+++.++++.+++. ||.|
T Consensus 242 ~ell~~~~~~~~~~~~l~i--------giqSgsd~vLk~m~-----R~~t~~~~~~~v~~lr~~~~gi~i 298 (437)
T PRK14331 242 EDIIKAMADIPQVCEHLHL--------PFQAGSDRILKLMD-----RGYTKEEYLEKIELLKEYIPDITF 298 (437)
T ss_pred HHHHHHHHcCCccCCceec--------ccccCChHHHHHcC-----CCCCHHHHHHHHHHHHHhCCCCEE
Confidence 56788888764 665554 55543222232222 348999999999999987 6654
No 190
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=20.14 E-value=97 Score=31.76 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=18.7
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEE
Q psy13692 227 AIYTEKMIKNVIEYARLRGIRVI 249 (592)
Q Consensus 227 ~~YT~edi~eIv~YA~~rGI~VI 249 (592)
-.++.++.++|.+||+++||..+
T Consensus 51 ~el~~e~~~~L~~~~~~~gi~f~ 73 (241)
T PF03102_consen 51 LELSEEQHKELFEYCKELGIDFF 73 (241)
T ss_dssp HSS-HHHHHHHHHHHHHTT-EEE
T ss_pred hcCCHHHHHHHHHHHHHcCCEEE
Confidence 35899999999999999999776
No 191
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=20.06 E-value=2.4e+02 Score=30.45 Aligned_cols=55 Identities=29% Similarity=0.356 Sum_probs=35.1
Q ss_pred HHHHHHHhhCCCcEEEEEeecCCccccccccCCccccC--CCCCCCCCCcHHHHHHHHHHHHHcCCeEEe
Q psy13692 183 KKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLK--GAFGPDAIYTEKMIKNVIEYARLRGIRVIP 250 (592)
Q Consensus 183 k~~Id~Ma~~KlN~lHwHltDdqsfp~e~~~~P~Lt~~--Gay~p~~~YT~edi~eIv~YA~~rGI~VIP 250 (592)
++++++++.+.+..+-+-+ | . --|+++.. |. .-|.-+-+.++++|+.+-||.|+-
T Consensus 204 ~~lv~eLeeAGLdRiNlSv-~----a----LDpk~Ak~L~G~----~dYdv~kvle~aE~i~~a~idvlI 260 (414)
T COG2100 204 KKLVDELEEAGLDRINLSV-D----A----LDPKLAKMLAGR----KDYDVKKVLEVAEYIANAGIDVLI 260 (414)
T ss_pred HHHHHHHHHhCCceEEeec-c----c----CCHHHHHHhcCc----cccCHHHHHHHHHHHHhCCCCEEE
Confidence 5666666666655554422 1 0 12333321 32 469999999999999999999873
Done!