RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13692
(592 letters)
>1now_A Beta-hexosaminidase beta chain; (beta/alpha)8-barrel, homodimer,
family 20 glycosidase, HYDR; HET: NAG IFG; 2.20A {Homo
sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 1nou_A* 1np0_A*
2gjx_B* 3lmy_A* 1o7a_A* 2gk1_B*
Length = 507
Score = 519 bits (1339), Expect = 0.0
Identities = 205/483 (42%), Positives = 285/483 (59%), Gaps = 22/483 (4%)
Query: 46 VSGKSCDILEDAILRYTEILKTNWRNLTKFDSVVTAPNIVGKTIKLKIRLLNECEKYPHI 105
+G SC +LE+A RY + ++ + + + + I L +EC+ +P+I
Sbjct: 37 TAGPSCTLLEEAFRRYHGYIFGFYK--WHHEPAEFQAKTQVQQLLVSITLQSECDAFPNI 94
Query: 106 DMDEKYTLEIKNSSCLLTSQSIWGILRGLETFSQLPIPAPNGDQLIIRVQTIEDFPQFPH 165
DE YTL +K +L + +WG LRGLETFSQL G I TI D P+F H
Sbjct: 95 SSDESYTLLVKEPVAVLKANRVWGALRGLETFSQLVYQDSYG-TFTINESTIIDSPRFSH 153
Query: 166 RGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGP 225
RG+L+D SRHYLP+K I K LD M++NK NVLHWH+VDDQSFPY+S FP LS KG++
Sbjct: 154 RGILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGSYSL 213
Query: 226 DAIYTEKMIKNVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRVEGKTFVGPL 285
+YT ++ VIEYARLRGIRV+PE DTPGHT S G + C R GP+
Sbjct: 214 SHVYTPNDVRMVIEYARLRGIRVLPEFDTPGHTLSWGKGQKDLLTPCYSRQNKLDSFGPI 273
Query: 286 DPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQNPEIKAFMSTRQW--DGPQ 343
+PT N T F+ F E+ + FP+ ++HLGGDEV+F CWE NP+I+ FM + + D +
Sbjct: 274 NPTLNTTYSFLTTFFKEISEVFPDQFIHLGGDEVEFKCWESNPKIQDFMRQKGFGTDFKK 333
Query: 344 LQSYYMQYLLKAIKTIRKRSVVWEEVFQDWKNVNGDAQAMSMDKDTIVQVWRGGGLEGAS 403
L+S+Y+Q +L I TI K S+VW+EVF D + TIV+VW+
Sbjct: 334 LESFYIQKVLDIIATINKGSIVWQEVFDD---------KAKLAPGTIVEVWKD---SAYP 381
Query: 404 AAVKRVVSAGYKVINSIGWYLD--NLEQEFETYHGIRVGSIDLTPEEKKLFLGGEACMWG 461
+ RV ++G+ VI S WYLD + Q++ Y+ + T ++K+LF+GGEAC+WG
Sbjct: 382 EELSRVTASGFPVILSAPWYLDLISYGQDWRKYYKVEPLDFGGTQKQKQLFIGGEACLWG 441
Query: 462 EKVDETNIESRVWPRACAAAEHLWSSPQPSN--NTKNRITEHVCRLKRRNVQAAPVYDIS 519
E VD TN+ R+WPRA A E LWSS + + +R+T H CR+ R + A P+Y
Sbjct: 442 EYVDATNLTPRLWPRASAVGERLWSSKDVRDMDDAYDRLTRHRCRMVERGIAAQPLY-AG 500
Query: 520 YCS 522
YC+
Sbjct: 501 YCN 503
>2gjx_A Beta-hexosaminidase alpha chain; beta-hexosaminidase A,
glycosidase, TAY-sachs disease, GM2 ganglisode, TIM
barrel, hydrolase; HET: NAG BMA NDG; 2.80A {Homo
sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 2gk1_A*
Length = 507
Score = 510 bits (1316), Expect = e-177
Identities = 205/483 (42%), Positives = 287/483 (59%), Gaps = 20/483 (4%)
Query: 47 SGKSCDILEDAILRYTEILKTNWRNLTKFDSVVTAPNIVGKTIKLKIRLLNECEKYPHID 106
+ C +L++A RY ++L + + + + + + + C + P ++
Sbjct: 32 AQPGCSVLDEAFQRYRDLLFGSGSWPRPYLTG-KRHTLEKNVLVVSVVT-PGCNQLPTLE 89
Query: 107 MDEKYTLEIKNSSCLLTSQSIWGILRGLETFSQLPIPAPNGDQLIIRVQTIEDFPQFPHR 166
E YTL I + CLL S+++WG LRGLETFSQL + G I IEDFP+FPHR
Sbjct: 90 SVENYTLTINDDQCLLLSETVWGALRGLETFSQLVWKSAEG-TFFINKTEIEDFPRFPHR 148
Query: 167 GLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGP- 225
GLL+D SRHYLP+ +I LD+M+YNKLNV HWHLVDD SFPYES FP L KG++ P
Sbjct: 149 GLLLDTSRHYLPLSSILDTLDVMAYNKLNVFHWHLVDDPSFPYESFTFPELMRKGSYNPV 208
Query: 226 DAIYTEKMIKNVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRVEGKTFVGPL 285
IYT + +K VIEYARLRGIRV+ E DTPGHT S PG+P + C E GP+
Sbjct: 209 THIYTAQDVKEVIEYARLRGIRVLAEFDTPGHTLSWGPGIPGLLTPCYSGSEPSGTFGPV 268
Query: 286 DPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQNPEIKAFMSTRQW--DGPQ 343
+P+ N T +F+ F E+ FP+ Y+HLGGDEVDF CW+ NPEI+ FM + + D Q
Sbjct: 269 NPSLNNTYEFMSTFFLEVSSVFPDFYLHLGGDEVDFTCWKSNPEIQDFMRKKGFGEDFKQ 328
Query: 344 LQSYYMQYLLKAIKTIRKRSVVWEEVFQDWKNVNGDAQAMSMDKDTIVQVWRGGGLEGAS 403
L+S+Y+Q LL + + K VVW+EVF + + + DTI+QVWR
Sbjct: 329 LESFYIQTLLDIVSSYGKGYVVWQEVFDN---------KVKIQPDTIIQVWREDIPVNYM 379
Query: 404 AAVKRVVSAGYKVINSIGWYLDNLE--QEFETYHGIRVGSIDLTPEEKKLFLGGEACMWG 461
++ V AG++ + S WYL+ + +++ ++ + + + TPE+K L +GGEACMWG
Sbjct: 380 KELELVTKAGFRALLSAPWYLNRISYGPDWKDFYVVEPLAFEGTPEQKALVIGGEACMWG 439
Query: 462 EKVDETNIESRVWPRACAAAEHLWSSPQPSN--NTKNRITEHVCRLKRRNVQAAPVYDIS 519
E VD TN+ R+WPRA A AE LWS+ S+ R++ C L RR VQA P+ +
Sbjct: 440 EYVDNTNLVPRLWPRAGAVAERLWSNKLTSDLTFAYERLSHFRCELLRRGVQAQPLN-VG 498
Query: 520 YCS 522
+C
Sbjct: 499 FCE 501
>3ozo_A N-acetylglucosaminidase; beta-N-acetyl-D-hexosaminidase,
hydrolase-hydrolase inhibito; HET: NGT; 2.00A {Ostrinia
furnacalis} PDB: 3nsn_A* 3nsm_A* 3ozp_A* 3s6t_A*
Length = 572
Score = 484 bits (1247), Expect = e-166
Identities = 141/514 (27%), Positives = 232/514 (45%), Gaps = 49/514 (9%)
Query: 42 FLFKVSGKSCDILEDAILRYTEILKTNWRNLTKFDSVVTAPNIVGKTIKLKIRLLNECEK 101
G + D++E A R+ E + + P + GK + + + N EK
Sbjct: 67 VKILKKGATDDLMEAAAKRFKEQVSLAIP-------RGSTPKLTGKAVDVYLVNENPNEK 119
Query: 102 YPHIDMDEKYTLEIKNSSC-----LLTSQSIWGILRGLETFSQLPIPAPNGDQLI-IRVQ 155
++MDE Y L + S +T+ S +G+ GLET SQL + D L+ +R
Sbjct: 120 AFSLEMDESYGLRVSPSGADRVNATITANSFFGMRHGLETLSQLFVFDDIRDHLLMVRDV 179
Query: 156 TIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFP 215
I D P +P+RG+L+D +R+Y I++IK+ ++ M+ KLN HWH+ D QSFP+ + K P
Sbjct: 180 NISDKPVYPYRGILLDTARNYYSIESIKRTIEAMAAVKLNTFHWHITDSQSFPFVTTKRP 239
Query: 216 SLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHC--- 272
+L GA P +YT+ I+ V+ + RG+RV+PE D P H C
Sbjct: 240 NLYKFGALSPQKVYTKAAIREVVRFGLERGVRVLPEFDAPAHVGEGWQDTDLTVCFKAEP 299
Query: 273 PHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRF-PESYVHLGGDEVDFFCWEQNPEIK 331
+ G L+PTK+ ++ D+++++ + F H+GGDEV CW + I+
Sbjct: 300 WKSYCVEPPCGQLNPTKDELYQYLEDIYSDMAEVFDTTDIFHMGGDEVSEACWNSSDSIQ 359
Query: 332 AFMSTRQWDGP-----QLQSYYMQYLLKAIKTI---RKRSVVWEEVFQDWKNVNGDAQAM 383
FM +WD +L +Y+ Q + ++W ++K+++
Sbjct: 360 NFMMQNRWDLDKESFLKLWNYFQQKAQDKAYKAFGKKLPLILWTSTLTNYKHIDDYLNK- 418
Query: 384 SMDKDTIVQVWRGGGLEGASAAVKRVVSAGYKVINSIG--WYLDNLEQEFETYHGIRVGS 441
D I+QVW G +++ GY++I S Y D +
Sbjct: 419 ---DDYIIQVWTTGVDPQIKGLLEK----GYRLIMSNYDALYFDCGYGAWVGAGNNWCSP 471
Query: 442 ------------IDLTPEEKKLFLGGEACMWGEKVDETNIESRVWPRACAAAEHLWSSPQ 489
+ E + LGGEA +W E+ D + ++ R+WPRA A AE LW+ P
Sbjct: 472 YIGWQKVYDNSPAVIALEHRDQVLGGEAALWSEQSDTSTLDGRLWPRAAALAERLWAEPA 531
Query: 490 PS-NNTKNRITEHVCRLKRRNVQAAPVYDISYCS 522
S + + R+ RL R +QA + +C
Sbjct: 532 TSWQDAEYRMLHIRERLVRMGIQAESLQ-PEWCY 564
>3rcn_A Beta-N-acetylhexosaminidase; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, alpha-beta
half sandwich; HET: MSE; 2.51A {Arthrobacter aurescens}
Length = 543
Score = 410 bits (1056), Expect = e-138
Identities = 108/466 (23%), Positives = 201/466 (43%), Gaps = 68/466 (14%)
Query: 108 DEKYTLEIKNSSCLLTSQSIWGILRGLETFSQL-------PIPAPNGDQLIIRVQTIEDF 160
E Y LE+ + + ++++ G G +T QL P + + ++ED
Sbjct: 77 AEAYRLEV-SDAVVISAGGAAGAFYGAQTLLQLLGPAALRQAPVVAVEGWSVPRVSVEDK 135
Query: 161 PQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLK 220
P+F +RG ++D +RH++P + + +++M+ +KLNVLH HL DDQ + + ++P L+
Sbjct: 136 PRFGYRGTMLDVARHFMPKDNVLRFIEVMAMHKLNVLHLHLTDDQGWRMQINRYPKLTET 195
Query: 221 GAFGPDA-----------------IYTEKMIKNVIEYARLRGIRVIPEIDTPGHTDSMEP 263
GA+ ++ YT+ ++ ++ +A R I VIPEID PGH+ +
Sbjct: 196 GAWRRESSLGSWRAGVFDGRPHGGFYTQDDLREIVAFAADRHITVIPEIDVPGHSQAAIA 255
Query: 264 GMPQIHCHC-----PHRVEGKTFV-GPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGD 317
P++ P V + + + +L+F R++ E+ + FP ++ LGGD
Sbjct: 256 AYPELGAGPADGSSPVEVWTRWGINETVLEVSETSLEFYRNVLDEVVEIFPSPWISLGGD 315
Query: 318 EVDFFCWEQNPEIKAFMSTRQWDGP-QLQSYYMQYLLKAIKTIRKRSVVWEEVFQDWKNV 376
EV W+ + + +A + D L S+++ L +K + + VW+E+
Sbjct: 316 EVPLTQWQASAQAQAKAAELGLDDVSGLHSWFVGQLALHLKHHGRATSVWDEIGDG---- 371
Query: 377 NGDAQAMSMDKDTIVQVWRGGGLEGASAAVKRVVSAGYKVINSIG--WYLDNLEQEFETY 434
+ +V WRG EG A++ GY V+ YLD+ + + +
Sbjct: 372 -------GLPDGALVASWRGY--EGGIDALR----KGYDVVMCPEHKLYLDHRQADGDDE 418
Query: 435 HGIRVGSIDL-------------TPEEKKLFLGGEACMWGEKV-DETNIESRVWPRACAA 480
L + LG +A +W E + ++ +PR A
Sbjct: 419 PVPVGFVTTLQAVYEFEPLPGVEGTDFPGRLLGAQANIWSEHLDSPRRVQFAAFPRLSAI 478
Query: 481 AEHLWSSPQPSN--NTKNRIT-EHVCRLKRRNVQAAPVYDISYCSP 523
+E WS+P + R+T H+ RL+ V+ P+ +
Sbjct: 479 SEVFWSNPAGRDYDEFLTRLTGAHLARLEAMGVEYRPLSGPAPWQQ 524
>3gh5_A HEX1, beta-hexosaminidase; beta-N-acetylhexosaminidase,
glycosphingolipids, paenibacill GH20, hydrolase,
structural genomics, NPPSFA; HET: NAG; 1.60A
{Paenibacillus SP} PDB: 3gh4_A* 3gh7_A*
Length = 525
Score = 403 bits (1037), Expect = e-135
Identities = 112/486 (23%), Positives = 189/486 (38%), Gaps = 65/486 (13%)
Query: 56 DAILRYTEILKTNWRNLTKFDSVVTAPNIVGKTIKLKIRLLNECEKYPHIDMDEKYTLEI 115
D + + L T + V N + + + +E Y L
Sbjct: 74 DELFNIGQALAKKLNASTGYTISVVKSN-QPTAGSIYLTTVGGNAALG----NEGYDLIT 128
Query: 116 KNSSCLLTSQSIWGILRGLETFSQLPIPAP------NGDQLIIRVQTIEDFPQFPHRGLL 169
++ LT+ G+ RG +T QL +G Q +I I D P++ +RGL+
Sbjct: 129 TSNQVTLTANKPEGVFRGNQTLLQLLPAGIEKNTVVSGVQWVIPHSNISDKPEYEYRGLM 188
Query: 170 VDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAF-----G 224
+D +RH+ + +K+Q+D+ S K+N H HL DDQ + E K +P L G+ G
Sbjct: 189 LDVARHFFTVDEVKRQIDLASQYKINKFHMHLSDDQGWRIEIKSWPDLIEIGSKGQVGGG 248
Query: 225 PDAIYTEKMIKNVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCH---CPHRVEGKTF 281
P YT++ K+++ YA R I VIPEID PGHT++ +++ R +
Sbjct: 249 PGGYYTQEQFKDIVSYAAERYIEVIPEIDMPGHTNAALASYGELNPDGKRKAMRTDTAVG 308
Query: 282 VGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQNPEIKAFMSTRQWDG 341
L P +T FV D+ +EL P Y+HLGGDE +
Sbjct: 309 YSTLMPRAEITYQFVEDVISELAAISPSPYIHLGGDESNATSAA---------------- 352
Query: 342 PQLQSYYMQYLLKAIKTIRKRSVVWEEVFQDWKNVNGDAQAMSMDKDTIVQVWRGGGLEG 401
Y+ + + K+ V W+ D+++Q W
Sbjct: 353 --DYDYFFGRVTAIANSYGKKVVGWDPSDTSSG----------ATSDSVLQNWTCSA--- 397
Query: 402 ASAAVKRVVSAGYKVINSIG-WYLDNLEQEFETYHGIRVGSIDL---------TPEEKKL 451
+ + G KVI S YLD G ++ +
Sbjct: 398 --STGTAAKAKGMKVIVSPANAYLDMKYYSDSPIGLQWRGFVNTNRAYNWDPTDCIKGAN 455
Query: 452 FLGGEACMWGEKV-DETNIESRVWPRACAAAEHLWSSPQPSN--NTKNRITEHVCRLKRR 508
G E+ +W E + +++ ++P+ + AE W++ N + K R+ EH RL+ +
Sbjct: 456 IYGVESTLWTETFVTQDHLDYMLYPKLLSNAEVGWTARGDRNWDDFKERLIEHTPRLQNK 515
Query: 509 NVQAAP 514
++
Sbjct: 516 GIKFFA 521
>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20,
substrate-assisted catalysis, alpha/beta barrel,
isofagomin inhibitor complex; HET: IFG; 1.75A
{Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB:
1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*
Length = 512
Score = 385 bits (990), Expect = e-128
Identities = 106/440 (24%), Positives = 167/440 (37%), Gaps = 62/440 (14%)
Query: 108 DEKYTLEIKNSSCLLTSQSIWGILRGLETFSQLPIPAPNGDQ-----LIIRVQTIEDFPQ 162
DE Y L+ + +T++ G+ G++T QL PA D ++ TIED P+
Sbjct: 97 DEGYRLDSGPAGVTITARKAAGLFHGVQTLRQLLPPAVEKDSAQPGPWLVAGGTIEDTPR 156
Query: 163 FPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGA 222
+ R ++D SRH+ + +K+ +D ++ K N LH HL DDQ + +P L+ G
Sbjct: 157 YAWRSAMLDVSRHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGG 216
Query: 223 F-----GPDAIYTEKMIKNVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHC---PH 274
GP YT+ K ++ YA R + V+PEID PGHT++ +++C P
Sbjct: 217 STEVGGGPGGYYTKAEYKEIVRYAASRHLEVVPEIDMPGHTNAALASYAELNCDGVAPPL 276
Query: 275 RVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQNPEIKAFM 334
K L K+VT DFV D+ EL P Y+H+GGDE
Sbjct: 277 YTGTKVGFSSLCVDKDVTYDFVDDVIGELAALTPGRYLHIGGDEAHSTPKA--------- 327
Query: 335 STRQWDGPQLQSYYMQYLLKAIKTIRKRSVVWEEVFQDWKNVNGDAQAMSMDKDTIVQVW 394
+M+ + + K V W ++ + +VQ W
Sbjct: 328 ---------DFVAFMKRVQPIVAKYGKTVVGWHQLAGA-----------EPVEGALVQYW 367
Query: 395 RG-GGLEGASAAVKRVVSAGYKVINSIG--WYLDNLEQEFETYHGIRVGSI--------- 442
+ A V G +I S YLD ++ +T G+
Sbjct: 368 GLDRTGDAEKAEVAEAARNGTGLILSPADRTYLD-MKYTKDTPLGLSWAGYVEVQRSYDW 426
Query: 443 ----DLTPEEKKLFLGGEACMWGEKV-DETNIESRVWPRACAAAEHLWSSPQPSN--NTK 495
L G EA +W E + D ++ +PR AE WS + K
Sbjct: 427 DPAGYLPGAPADAVRGVEAPLWTETLSDPDQLDYMAFPRLPGVAELGWSPASTHDWDTYK 486
Query: 496 NRITEHVCRLKRRNVQAAPV 515
R+ + +
Sbjct: 487 VRLAAQAPYWEAAGIDFYRS 506
>1yht_A DSPB; beta barrel, hydrolase; 2.00A {Aggregatibacter
actinomycetemcomitans} SCOP: c.1.8.6
Length = 367
Score = 324 bits (833), Expect = e-107
Identities = 58/389 (14%), Positives = 126/389 (32%), Gaps = 66/389 (16%)
Query: 148 DQLIIRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSF 207
+ + GL++D +RH+ + IK +D +S + N LH H D +++
Sbjct: 1 NCCVKGNSIYPQKTSTKQTGLMLDIARHFYSPEVIKSFIDTISLSGGNFLHLHFSDHENY 60
Query: 208 PYESKKFPSLSLKGAFGPDA----------IYTEKMIKNVIEYARLRGIRVIPEIDTPGH 257
ES + G D + + + ++ YA+ +GI +IPE+D+P H
Sbjct: 61 AIESHLLNQRAENAVQGKDGIYINPYTGKPFLSYRQLDDIKAYAKAKGIELIPELDSPNH 120
Query: 258 TDSMEPGMPQIHCHC-PHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRF--PESYVHL 314
++ + + ++ + +D T ++ F++ L +E+ F + H+
Sbjct: 121 MTAIFKLVQKDRGVKYLQGLKSRQVDDEIDITNADSITFMQSLMSEVIDIFGDTSQHFHI 180
Query: 315 GGDEVDFFCWEQNPEIKAFMSTRQWDGPQLQSYYMQYLLKAIKTIRKRSVVWEEVFQDWK 374
GGDE + + I Y L ++ ++ +W +
Sbjct: 181 GGDEFGYSVESNHEFI----------------TYANKLSYFLEKKGLKTRMWNDGLI--- 221
Query: 375 NVNGDAQAMSMDKDTIVQVWRGGG----------LEGASAAVKRVVSAGYKVINSIGWYL 424
++ + + W G ++ +++ G+ V+N +YL
Sbjct: 222 ----KNTFEQINPNIEITYWSYDGDTQDKNEAAERRDMRVSLPELLAKGFTVLNYNSYYL 277
Query: 425 D------------NLEQEFETYHGIRVGSID-----LTPEEKKLFLGGEACMWGEKVD-- 465
+ +G D + G +WGE
Sbjct: 278 YIVPKASPTFSQDAAFAAKDVIKNWDLGVWDGRNTKNRVQNTHEIAGAALSIWGEDAKAL 337
Query: 466 -ETNIESRVWPRACAAAEHLWSSPQPSNN 493
+ I+ A ++
Sbjct: 338 KDETIQKNTKSLLEAVIHKTNGDEHHHHH 366
>2yl6_A Beta-N-acetylhexosaminidase; peptidoglycan-anchor, hydrolase; HET:
ETE; 1.60A {Streptococcus pneumoniae} PDB: 2yll_A*
2yl8_A* 3rpm_A*
Length = 434
Score = 312 bits (800), Expect = e-101
Identities = 72/400 (18%), Positives = 141/400 (35%), Gaps = 49/400 (12%)
Query: 159 DFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLS 218
+ + + +D R Y + +K+ +D + LH + +D + +
Sbjct: 1 NEKLAKKKIVSIDAGRKYFSPEQLKEIIDKAKHYGYTDLHLLVGND-GLRFMLDDMSITA 59
Query: 219 LKGAFGPDAI-------------------YTEKMIKNVIEYARLRGIRVIPEIDTPGHTD 259
+ D + TE + ++I YA+ +GI +IP +++PGH D
Sbjct: 60 NGKTYASDDVKRAIEKGTNDYYNDPNGNHLTESQMTDLINYAKDKGIGLIPTVNSPGHMD 119
Query: 260 SMEPGMPQIHCHCP-HRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPES--YVHLGG 316
++ M ++ P GK +D + F + L + F + ++G
Sbjct: 120 AILNAMKELGIQNPNFSYFGKKSARTVDLDNEQAVAFTKALIDKYAAYFAKKTEIFNIGL 179
Query: 317 DEV-----DFFCWEQNPEIKAFMSTRQW-DGPQLQSYYMQYLLKAIKTIRKRSVVWEEVF 370
DE D W K + + G + Y L + +K+ + + + +
Sbjct: 180 DEYANDATDAKGWSVLQADKYYPNEGYPVKGYEKFIAYANDLARIVKSHGLKPMAFNDGI 239
Query: 371 QDWKNVNGDAQAMSMDKDTIVQVWRGGGLEGASAAVKRVVSAGYKVINSIG--WYLD--- 425
D S DKD IV +W GG A+ K + G++++N+ +Y+
Sbjct: 240 YYN----SDTSFGSFDKDIIVSMWTGGWGGYDVASSKLLAEKGHQILNTNDAWYYVLGRN 295
Query: 426 -------NLEQEFETYHGIRVGSIDLTPEEKKLFLGGEACMWGEKVDETNIESRVWP--R 476
NL+Q + S+ T +GG W + SR++ R
Sbjct: 296 ADGQGWYNLDQGLNGIKNTPITSVPKTEGADIPIIGGMVAAWADTPSARYSPSRLFKLMR 355
Query: 477 ACAAAEHLWSSPQPSN--NTKNRITEHVCRLKRRNVQAAP 514
A A + + + N + + + R +V A
Sbjct: 356 HFANANAEYFAADYESAEQALNEVPKDLNRYTAESVTAVK 395
>2yl5_A Beta-N-acetylhexosaminidase; hydrolase; 2.15A {Streptococcus
pneumoniae} PDB: 2yla_A* 2yl9_A*
Length = 442
Score = 287 bits (737), Expect = 2e-91
Identities = 64/399 (16%), Positives = 133/399 (33%), Gaps = 45/399 (11%)
Query: 157 IEDFPQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPS 216
++ + +D R Y + +K+ +D S + +H L +D +
Sbjct: 2 SHMEKLAKNKVISIDAGRKYFTLNQLKRIVDKASELGYSDVHLLLGNDG-LRFLLDDMTI 60
Query: 217 LSLKGAFGPDAI-------------------YTEKMIKNVIEYARLRGIRVIPEIDTPGH 257
+ + D + T+ + +IEYA+ + I +IP I++PGH
Sbjct: 61 TANGKTYASDDVKKAIIEGTKAYYDDPNGTALTQAEVTELIEYAKSKDIGLIPAINSPGH 120
Query: 258 TDSMEPGMPQIHCHCPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPES--YVHLG 315
D+M M ++ P K +D ++FV+ L + F + G
Sbjct: 121 MDAMLVAMEKLGIKNPQAHFDKVSKTTMDLKNEEAMNFVKALIGKYMDFFAGKTKIFNFG 180
Query: 316 GDEVDFFCWEQNPEIKAFMSTRQWDGPQLQSYYMQYLLKAIKTIRKRSVVWEEVFQDWKN 375
DE + + + + + Y L K + + + + F
Sbjct: 181 TDEYANDATSA----QGWYYLKWYQLYGKFAEYANTLAAMAKERGLQPMAFNDGFYYEDK 236
Query: 376 VNGDAQAMSMDKDTIVQVWRGGGLEGASAAVKRVVSAGYKVINSIGW--YLDNLEQEFET 433
+ DKD ++ W G A+ + + S GYK +N+ G Y+ + E
Sbjct: 237 DDVQ-----FDKDVLISYWSKGWWGYNLASPQYLASKGYKFLNTNGDWYYILGQKPEDGG 291
Query: 434 YHGIRVGSI-----------DLTPEEKKLFLGGEACMWGEKVDETNIESRVWPRACAAAE 482
+ PE +G +W ++ E ++ A A+
Sbjct: 292 GFLKKAIENTGKTPFNQLASTKYPEVDLPTVGSMLSIWADRPSAEYKEEEIFELMTAFAD 351
Query: 483 HLWSSPQPS-NNTKNRITEHVCRLKRRNVQAAPVYDISY 520
H + + N + + + L+ + ++ D +
Sbjct: 352 HNKDYFRANYNALREELAKIPTNLEGYSKESLEALDAAK 390
>1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis,
A/B(TIM)-barrel, site directed mutagenesis; HET: CBS;
1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3
c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A*
Length = 858
Score = 283 bits (725), Expect = 1e-85
Identities = 107/564 (18%), Positives = 188/564 (33%), Gaps = 128/564 (22%)
Query: 45 KVSGKSCDILEDAILRYTEILKT-NWRNLTKFDSVVTAPNIVGKTIKLKIRLLNECEKYP 103
KV + D+ + L + ++K +F + G IK I+
Sbjct: 198 KVHAQDADLRKGVALDLSTLVKPAADVVSQRFALLGVPVQTNGYPIKTDIQPGKF---KG 254
Query: 104 HIDMDEKYTLEIKNSSCLLTSQSIWGILRGLETFSQLPIPAPNGDQLIIRVQTIEDFPQF 163
+ + Y L+I + G+ GL++ L P+ I D P+F
Sbjct: 255 AMAVSGAYELKIGKKEAQVIGFDQAGVFYGLQSILSL---VPSDGSGKIATLDASDAPRF 311
Query: 164 PHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAF 223
P+RG+ +D +R++ A+ + LD M+ KLN H+HL DD+ + E P L+ G
Sbjct: 312 PYRGIFLDVARNFHKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLPELTEVGGQ 371
Query: 224 -----------------GPDAI---YTEKMIKNVIEYARLRGIRVIPEIDTPGHT----D 259
GPD ++ + ++I+YA+ R I VIPEID P H
Sbjct: 372 RCHDLSETTCLLPQYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIPEIDMPAHARAAVV 431
Query: 260 SMEPGMPQIHCH------------------CPHRVEGKTFVGPLDPTKNVTLDFVRDLFT 301
SME ++H V+ L+P + + FV +
Sbjct: 432 SMEARYKKLHAAGKEQEANEFRLVDQTDTSNTTSVQFFNRQSYLNPCLDSSQRFVDKVIG 491
Query: 302 ELGQRFPES-----YVHLGGDEV--------------------------DFFCWEQNPEI 330
E+ Q E+ H GG E + W ++
Sbjct: 492 EIAQMHKEAGQPIKTWHFGGAEAKNIRLGAGYTDKAKPEPGKGIIDQSNEDKPWAKSQVC 551
Query: 331 KAFMSTRQ-WDGPQLQSYYMQYLLKAIKTIRKRSVV-WEEVFQDWKNVNGDAQAMSMDKD 388
+ + + D L SY+ Q + K +K + W++ +D ++
Sbjct: 552 QTMIKEGKVADMEHLPSYFGQEVSKLVKAHGIDRMQAWQDGLKD-----AESSKAFATSR 606
Query: 389 TIVQVWR---GGGLEGASAAVKRVVSAGYKVINSIGW--YLD------------------ 425
V W GG + + + GY+V+ S Y+D
Sbjct: 607 VGVNFWDTLYWGGFDSVNDWANK----GYEVVVSNPDYVYMDFPYEVNPDERGYYWGTRF 662
Query: 426 -NLEQEFE------------TYHGIRVGSIDLTPEEKKLFLGGEACMWGEKV-DETNIES 471
+ + F + + + G A +W E + +E
Sbjct: 663 SDERKVFSFAPDNMPQNAETSVDRDGNHFNAKSDKPWPGAYGLSAQLWSETQRTDPQMEY 722
Query: 472 RVWPRACAAAEHLWSSPQPSNNTK 495
++PRA + AE W + +
Sbjct: 723 MIFPRALSVAERSWHRAGWEQDYR 746
>2epl_X N-acetyl-beta-D-glucosaminidase; glycoside hydrolase, family 20,
GCNA, hydro; 1.40A {Streptococcus gordonii} PDB: 2epk_X
2epm_X 2epn_A* 2epo_A
Length = 627
Score = 231 bits (590), Expect = 5e-68
Identities = 59/472 (12%), Positives = 134/472 (28%), Gaps = 62/472 (13%)
Query: 82 PNIVGKTIKLKIRLLNECEKYPHIDMDEKYTLEI--KNSSCLLTSQSIWGILRGLETFSQ 139
++L L + D ++++ + ++ + + R L S
Sbjct: 9 SKQEKALVRLDKYLNLGEIAVSLV-TDSATSIKVEGRQGYYQVSYKQPHQLYRALALLSA 67
Query: 140 LPIPAPNGDQLIIRVQTIEDFPQFPHRGLLVDGSRHYLP-IKAIKKQLDIMSYNKLNVLH 198
+ IE+ + + D SR+ + + + KK +++++ +
Sbjct: 68 ALRSGQDE-------VQIEEEAAYEDLAYMADCSRNAVLNLSSAKKMIEVLALMGYSTFE 120
Query: 199 WHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYARLRGIRVIPEIDTPGHT 258
++ D YE + P YT ++ + +YA + +P I T H
Sbjct: 121 LYMEDT----YEIENQPYFGYFRGR-----YTVAELQEIEDYAADFDMSFVPCIQTLAHL 171
Query: 259 DSMEPGMPQIHCHCPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDE 318
+ + E + L + D + +F + +++G DE
Sbjct: 172 SAF------VKWGIKEVQELRDVEDILLIGEEKVYDLIEGMFQTMAH-LHTRKINIGMDE 224
Query: 319 VDFFCWEQNPEIKAFMSTRQWDGPQLQSYYMQYLLKAIKTIRKRSVVWEEVFQDWKNVNG 378
+ F + L +++ +L +W ++F
Sbjct: 225 AHLVGLGRYLIKHGF-----QNRSLLMCQHLERVLDIADKYGFNCQMWSDMFF-----KL 274
Query: 379 DAQAMSMDKDTIVQVWRGGGLEGASAAVKRVV-----SAGYKVINSIGWYLD-------- 425
+ D+D + L+ V V + K + +
Sbjct: 275 MSADGQYDRDVEIPEETRVYLDRLKERVTLVYWDYYQDSEEKYNRNFQNHHKISQDIAFA 334
Query: 426 ---NLEQEFETYHGIRVGSID--LTPEEKKLFLGGEACMWGEKVDETNIESRVWPRACAA 480
F ++ K WG+ ET+ + V P
Sbjct: 335 GGAWKWIGFTPHNHFSRLVAIEANKACRKNQVKEVIVTGWGDNGGETS-QFSVLPALQIW 393
Query: 481 AEHLWSSPQPSNNTKNRITEHVCRLKRRNVQAAPVYDISYCSPVIPQPTRGS 532
AE + + +++EH + D++ P +P G
Sbjct: 394 AELAYRND------LKKVSEHFLVSTGLDFDDFMKIDLANLLPDLPDNLSGI 439
>2v5c_A O-GLCNACASE NAGJ; glycosidase, GH84, GH84C, hydrolase, coiled coil,
family 84 glycoside hydrolase, carbohydrate binding
module; 2.10A {Clostridium perfringens} PDB: 2cbj_A*
2cbi_A 2vur_A* 2x0y_A* 2j62_A* 2wb5_A* 2xpk_A* 2yds_A*
2ydr_A* 2ydq_A*
Length = 594
Score = 100 bits (250), Expect = 2e-22
Identities = 48/336 (14%), Positives = 93/336 (27%), Gaps = 38/336 (11%)
Query: 52 DILEDAILRYTEILK-TNWRNLTKFDSVVTAPNIVGKTIKLKIRLLNECEKYPHIDMDEK 110
+ E+A+ E L N ++ D T I + +E
Sbjct: 43 EADENAVNALREFLTANNIEINSENDPNSTTLIIGEVDDDIPELDEALNGTTAENLKEEG 102
Query: 111 YTLEIKNSSCLLTSQSIWGILRGLETFSQLPIPAPNGDQLIIRVQTIEDFPQFPHRGLLV 170
Y L + + + G G++TF QL + I I D+P RG++
Sbjct: 103 YALVSNDGKIAIEGKDGDGTFYGVQTFKQLV------KESNIPEVNITDYPTVSARGIVE 156
Query: 171 DGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYT 230
+ Q+ NKLN + DD + ++
Sbjct: 157 GFYGTPWTHQDRLDQIKFYGENKLNTYIYAPKDDPYHREKWREPYPE-----------SE 205
Query: 231 EKMIKNVIEYARLRGIRVI----PEIDTPGHTDSMEPGMPQIHCHCPHRVE--GKTFVGP 284
+ ++ +I + + + P ID D+ E + + ++F
Sbjct: 206 MQRMQELINASAENKVDFVFGISPGIDIRFDGDAGEEDFNHLITKAESLYDMGVRSFAIY 265
Query: 285 LDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDE-VDFFCWEQNPEIKAFMSTRQWDGPQ 343
D ++ + + RF E +V GD + T
Sbjct: 266 WDDIQDKSAAKHAQVL----NRFNEEFVKAKGDVKPLITVPTE-------YDTGAMVSNG 314
Query: 344 LQSYYMQYLLKAIKTIRKRSVVWEEVFQDWKNVNGD 379
Y + + + V+W +
Sbjct: 315 QPRAYTRIFAETVD--PSIEVMWTGPGVVTNEIPLS 348
>2v5d_A O-GLCNACASE NAGJ; family 32 carbohydrate binding module,
glycosidase, GH84, GH84C, CBM32, hydrolase, coiled coil;
3.30A {Clostridium perfringens}
Length = 737
Score = 91.7 bits (226), Expect = 2e-19
Identities = 49/338 (14%), Positives = 103/338 (30%), Gaps = 36/338 (10%)
Query: 52 DILEDAILRYTEILKTNWRNLTKFDSVVTAPNIVGKTIKLKIRLLNECEKYPHIDM-DEK 110
+ E+A+ E L N + + + I+G+ L ++ +E
Sbjct: 43 EADENAVNALREFLTANNIEINSENDPNSTTLIIGEVDDDIPELDEALNGTTAENLKEEG 102
Query: 111 YTLEIKNSSCLLTSQSIWGILRGLETFSQLPIPAPNGDQLIIRVQTIEDFPQFPHRGLLV 170
Y L + + + G G++TF QL + I I D+P RG++
Sbjct: 103 YALVSNDGKIAIEGKDGDGTFYGVQTFKQLV------KESNIPEVNITDYPTVSARGIVE 156
Query: 171 DGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYT 230
+ Q+ NKLN + DD PY +K+ P
Sbjct: 157 GFYGTPWTHQDRLDQIKFYGENKLNTYIYAPKDD---PYHREKWRE--------PYPESE 205
Query: 231 EKMIKNVIEYARLRGIRVI----PEIDTPGHTDSMEPGMPQIHCHCPHRVE--GKTFVGP 284
+ ++ +I + + + P ID D+ E + + ++F
Sbjct: 206 MQRMQELINASAENKVDFVFGISPGIDIRFDGDAGEEDFNHLITKAESLYDMGVRSFAIY 265
Query: 285 LDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQNPEIKAFMSTRQWDGPQL 344
D ++ + + + F ++ G + + + + Q
Sbjct: 266 WDDIQDKSAAKHAQVLNRFNEEFVKA---KGDVKPLITVPTE------YDTGAMVSNGQP 316
Query: 345 QSYYMQYLLKAIKTIRKRSVVWEEVFQDWKNVNGDAQA 382
++Y + +I V+W +
Sbjct: 317 RAYTRIFAETVDPSIE---VMWTGPGVVTNEIPLSDAQ 351
>2cho_A Glucosaminidase, hexosaminiase; O-GLCNACASE, hydrolase,
N-acetylglucosamine; 1.85A {Bacteroides
thetaiotaomicron} SCOP: a.246.1.1 c.1.8.10 d.92.2.3 PDB:
2chn_A 2vvn_A* 2vvs_A* 2x0h_A* 2xm2_A* 2w4x_A* 2w66_A*
2w67_A* 2wca_A* 2xj7_A* 2xm1_A* 2j47_A* 2jiw_A* 2wzh_A*
2wzi_A* 2j4g_A*
Length = 716
Score = 77.6 bits (190), Expect = 4e-15
Identities = 38/275 (13%), Positives = 79/275 (28%), Gaps = 32/275 (11%)
Query: 108 DEKYTLEIKNSSCLLTSQSIWGILRGLETFSQLPIPAPNGDQLIIRVQTIEDFPQFPHRG 167
E Y L + +L G L+TF+QL +G + I+D+P +RG
Sbjct: 78 KEGYYLSVNEKEIVLAGNDERGTYYALQTFAQL---LKDGK---LPEVEIKDYPSVRYRG 131
Query: 168 LLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDA 227
++ +A QL NK+N + DD + + P
Sbjct: 132 VVEGFYGTPWSHQARLSQLKFYGKNKMNTYIYGPKDDPYHSAPNWRLPYPD--------- 182
Query: 228 IYTEKMIKNVIEYARLRGIRVIPEIDT--PGHTDSMEPGMPQIHCHCPHRVEGKTFVGPL 285
++ ++ A + + I + + + +++ ++F
Sbjct: 183 -KEAAQLQELVAVANENEVDFVWAIHPGQDIKWNKEDRDLLLAKFEKMYQLGVRSFAVFF 241
Query: 286 DPTKNVT------LDFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQNP--EIKAFMST- 336
D + + + + Q P+ + W +
Sbjct: 242 DDISGEGTNPQKQAELLNYIDEKFAQVKPDINQLVMCPTEYNKSWSNPNGNYLTTLGDKL 301
Query: 337 -----RQWDGPQLQSYYMQYLLKAIKTIRKRSVVW 366
W G ++ S + + I KR
Sbjct: 302 NPSIQIMWTGDRVISDITRDGISWINERIKRPAYI 336
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.7 bits (128), Expect = 1e-07
Identities = 93/669 (13%), Positives = 209/669 (31%), Gaps = 207/669 (30%)
Query: 12 THKTLLLNFYERLVTN----------KQVLKDEYVG--VLEP-------FLFKVSGKSCD 52
+K +L F + V N K +L E + ++ LF
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF-------W 69
Query: 53 ILED----AILRYTE-ILKTNWRNL-TKFDSVVTAPNIVGKT-IKLKIRLLNECEKYP-- 103
L + ++ E +L+ N++ L + + P+++ + I+ + RL N+ + +
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 104 HIDMDEKYTLEIKNSSCLLTSQSIWGI-LRGLETF--SQLPIPAPNGDQLIIRVQTIEDF 160
++ + Y L+++ LL + + + G+ + + + +VQ DF
Sbjct: 130 NVSRLQPY-LKLRQ--ALLELRPAKNVLIDGVLGSGKTWVALDVCLSY----KVQCKMDF 182
Query: 161 PQFPHRGLLVDGSRHYLPIKAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLK 220
F +L +K ++ L L + + D ++ S ++ L+
Sbjct: 183 KIF------------WLNLKNCNSPETVL--EMLQKLLYQI--DPNWTSRSDHSSNIKLR 226
Query: 221 GAFGPDAIYTEKMIKNVIEYARL-RGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRV--- 276
+I E ++ +++ + V+ + ++ + C ++
Sbjct: 227 ----IHSIQAE--LRRLLKSKPYENCLLVLLNVQNAKAWNAFN-----LSC----KILLT 271
Query: 277 ---EGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPES------YVHLGGDEVDFFCWEQ- 326
+ T T +++LD T E Y+ ++ +
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTP-----DEVKSLLLKYLDCRPQDLP----REV 322
Query: 327 ---NPEIKAFMSTRQWDGPQLQSYYMQYLLKAIKTIRKRSV------VWEEVFQDW---- 373
NP + ++ DG + + TI + S+ + ++F
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 374 KNVNGDAQAMSM--------DKDTIVQVWRGGGLEGASAAVKRVVSAGYKVINSIGWYLD 425
+ + +S+ D +V L S K+ + I SI YL+
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVN-----KLHKYSLVEKQPKESTIS-IPSI--YLE 434
Query: 426 -------------------NLEQEFET-----------------YHGIRVGSIDLTPEEK 449
N+ + F++ +H + + +
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 450 KLFLGGEACMWGEKVDETNIESRVWPRACAAAEHLWSSPQPSNNTKNRITEHVCRLKRRN 509
+FL D +E ++ R + A W++ NT + +LK
Sbjct: 495 MVFL-----------DFRFLEQKI--RHDSTA---WNASGSILNT-------LQQLKF-- 529
Query: 510 VQAAPVYDISYCSPVIPQPTRGSFSYGRFFSLDHIRESLGLTKD---------NEEDSHY 560
Y Y P+ R + F L I E+L +K E+++ +
Sbjct: 530 ------YK-PYICDNDPKYERLVNAILDF--LPKIEENLICSKYTDLLRIALMAEDEAIF 580
Query: 561 ETVTSSSDK 569
E +
Sbjct: 581 EEAHKQVQR 589
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 3e-05
Identities = 31/183 (16%), Positives = 53/183 (28%), Gaps = 60/183 (32%)
Query: 260 SMEPGMPQIHCHCPHRVEGKTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEV 319
S E GM G T +D++ F ++Y G +
Sbjct: 1626 SQEQGM------------GMDLYK--------TSKAAQDVWNRADNHFKDTY---GFSIL 1662
Query: 320 DFFCWEQNPEIKAFMSTRQWDGPQLQSYYMQYLLKAIKTIRKRSVVWEEVFQD------- 372
D NP + G + + Y +TI + E++F++
Sbjct: 1663 DIV--INNPVNLTIH----FGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTS 1716
Query: 373 --WKNVNGD------AQ----AMSMDKDTIVQVWRGGGLEGASAAVKRVVSAGYKVINSI 420
+++ G Q M + + GL A A AG+ S+
Sbjct: 1717 YTFRSEKGLLSATQFTQPALTLMEK---AAFEDLKSKGLIPADATF-----AGH----SL 1764
Query: 421 GWY 423
G Y
Sbjct: 1765 GEY 1767
Score = 43.5 bits (102), Expect = 2e-04
Identities = 52/337 (15%), Positives = 87/337 (25%), Gaps = 118/337 (35%)
Query: 128 W-GILRGLETFSQLPIPAPNGDQLIIRVQTIEDFPQFPHRGLLVDGSRHYLPIKAIKKQL 186
+ G +R E + +P I ++E+ P L + L + ++ +
Sbjct: 305 FIG-VRCYEAYPNTSLPP------SILEDSLENNEGVPSPMLSISN----LTQEQVQDYV 353
Query: 187 DIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIE------Y 240
+ K N P + +SL G + V+ Y
Sbjct: 354 N-----KTN---------SHLPAGKQV--EISLVN--GAKNL--------VVSGPPQSLY 387
Query: 241 A---RLRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRVEGKTFVGPLDPTKNVTLDFVR 297
LR + +D Q P F P V F
Sbjct: 388 GLNLTLRKAKAPSGLD-------------Q--SRIPFSERKLKFSNRFLP---VASPFHS 429
Query: 298 DLFTELGQRFPESYVHLGGDEVDFFCWEQNPEIKA--FMSTRQWDGPQLQSYYMQYLLKA 355
L + L + V F +I+ + T DG L+ +
Sbjct: 430 HLLVPASDLINK---DLVKNNVSF----NAKDIQIPVY-DTF--DGSDLRVLSGSISERI 479
Query: 356 IKTIRKRSVVWEEVFQDWKNVNGDAQAMSMDKDTIVQVWRG-GGLEGASAAVKRVVSAGY 414
+ I + V WE I+ G GG G R G
Sbjct: 480 VDCIIRLPVKWET-------------TTQFKATHILDF--GPGGASGLGVLTHRNK-DGT 523
Query: 415 KVINSIGWYLDNLEQEFETYHGIRV---GSIDLTPEE 448
G+RV G++D+ P++
Sbjct: 524 ---------------------GVRVIVAGTLDINPDD 539
Score = 41.6 bits (97), Expect = 8e-04
Identities = 50/302 (16%), Positives = 88/302 (29%), Gaps = 104/302 (34%)
Query: 279 KTFVGPLDPTKNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQNPEIK---AFMS 335
VG L + F + +EL + ++ ++ W +NP ++
Sbjct: 181 HVLVGDL-------IKFSAETLSELIRTTLDAEKVFT-QGLNILEWLENPSNTPDKDYLL 232
Query: 336 TRQWDGP-----QLQSYYMQYLLKAIKTIRKRSVVWEEVFQDWKNVNGDAQAMSMDKDTI 390
+ P QL Y + T + E+
Sbjct: 233 SIPISCPLIGVIQLAHYVV--------TAKLLGFTPGELRSY------------------ 266
Query: 391 VQVWRGGGLEGASAAVKRVVSAGYKVI-NSIGW--YLDNLEQ--EFETYHGIR----VGS 441
L+GA+ + +V+A I + W + ++ + + G+R +
Sbjct: 267 --------LKGATGHSQGLVTA--VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN 316
Query: 442 IDLTPEEKKLFL-GGE---ACMWG----------EKVDETNIESRVWPRACAAAEHLWSS 487
L P + L E + M + V++TN HL +
Sbjct: 317 TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN-------------SHLPAG 363
Query: 488 PQPS----NNTKNRI----TEHVCRLKR--RNVQAAPVYDISYCSPVIPQPTRG-SFSYG 536
Q N KN + + + L R +A D S IP R FS
Sbjct: 364 KQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR----IPFSERKLKFSN- 418
Query: 537 RF 538
RF
Sbjct: 419 RF 420
Score = 37.7 bits (87), Expect = 0.012
Identities = 46/329 (13%), Positives = 92/329 (27%), Gaps = 118/329 (35%)
Query: 283 GPLDPTKNV-TLDFV-----RDLFTELGQRFPESYVHLGGDEVDFFCWEQ--NPEIKA-F 333
G L+ V T F ++ F + PE D+ E E+ F
Sbjct: 14 GSLEHVLLVPTASFFIASQLQEQFN---KILPEPTEGFAADD------EPTTPAELVGKF 64
Query: 334 MS--TRQWDGPQLQSYYMQYLLKAIKTIRKRSVVWEEVFQDWKNVNGDAQAMSMDKDT-- 389
+ + + P + Q L + E + + +++ A + + DT
Sbjct: 65 LGYVSSLVE-PSKVGQFDQVLNLCLTEF-------ENCYLEGNDIHALAAKLLQENDTTL 116
Query: 390 -----IVQVW--------RGGGLEGASAAVKRVVSAGYKVI-------NSIGWYLDNLEQ 429
+++ + R + SA + V +++ N+ Y + L
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD-YFEELRD 175
Query: 430 EFETYHGIRVGSIDLTPEEKKLFLGGEACMWGEKVDETNIESRVWPRACAAAEHLWSSPQ 489
++TYH + VG + I+ +AE L +
Sbjct: 176 LYQTYHVL-VGDL--------------------------IKF--------SAETLSELIR 200
Query: 490 PSNNTKNRITEHVCRLKR--RNVQAAPVYDISY--CSPV-IPQPTRGSFSYGRFFSLDHI 544
+ + ++ + N P D Y P+ P
Sbjct: 201 TTLDA-EKVFTQGLNILEWLENPSNTP--DKDYLLSIPISCPL----------------- 240
Query: 545 RESLGLTKDNEEDSHYETVTSSSDKAPTE 573
+G+ + +HY P E
Sbjct: 241 ---IGVI----QLAHYVVTAKLLGFTPGE 262
>1uuq_A Mannosyl-oligosaccharide glucosidase; hydrolase, mannosidase,
mannan, glycoside hydrolase, family 5; 1.5A {Cellvibrio
mixtus} SCOP: c.1.8.3 PDB: 1uz4_A*
Length = 440
Score = 36.9 bits (84), Expect = 0.015
Identities = 29/205 (14%), Positives = 62/205 (30%), Gaps = 10/205 (4%)
Query: 180 KAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIE 239
+ K+LD + +N L V ++S + K + G + + + + ++
Sbjct: 62 DRLAKELDNLKAIGVNNLRVLAVSEKSEINSAVKPAVTNGFGNYDETLL---QGLDYLLV 118
Query: 240 YARLRGIRVIPEI-----DTPGHTDSMEPGMPQIHCHCPHRVEGKTFVGPLD--PTKNVT 292
R + V+ + G T M + E + F+
Sbjct: 119 ELAKRDMTVVLYFNNFWQWSGGMTQYMAWIEGEPVQDPNVTNEWEAFMAKSASFYRSEKA 178
Query: 293 LDFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQNPEIKAFMSTRQWDGPQLQSYYMQYL 352
R ++ R D+ W+ E + S + Q+ ++
Sbjct: 179 QQEYRKTLEKIITRVNSINGKAYVDDATIMSWQLANEPRPGNSQTTAEEKQIYIDWVHAA 238
Query: 353 LKAIKTIRKRSVVWEEVFQDWKNVN 377
IKT+ +V + +VN
Sbjct: 239 AAYIKTLDAHHLVSSGSEGEMGSVN 263
>3qho_A Endoglucanase, 458AA long hypothetical endo-1,4-beta-glucanase;
cellulase, catalytic domain, hydrolase; HET: CTT; 1.65A
{Pyrococcus horikoshii} PDB: 3axx_A* 2zum_A 2zun_A*
3qhm_A* 3qhn_A*
Length = 458
Score = 36.0 bits (82), Expect = 0.030
Identities = 30/196 (15%), Positives = 60/196 (30%), Gaps = 41/196 (20%)
Query: 175 HYLPIKAIKKQLDIMSYNKLNVL----HWHLVDDQSFPYE--SKKFPSLSLKGAFGPDAI 228
H L + + L + N + V + P K P L +
Sbjct: 79 HGLWKRNWEDMLLQIKSLGFNAIRLPFCTESVKPGTQPIGIDYSKNPDLRGLDSL----- 133
Query: 229 YTEKMIKNVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRVEGKTFVGPLDPT 288
++++ +I+ A GI V+ +D H + PL T
Sbjct: 134 ---QIMEKIIKKAGDLGIFVL--LD--------------YHRIGCTH------IEPLWYT 168
Query: 289 KNVTLDFVRDLFTELGQRFPESYVHLGGD---EVDFFCWEQNPEIKAFMSTRQWDGPQLQ 345
++ + + + + E+ +RF + + +G D E +T W
Sbjct: 169 EDFSEEDFINTWIEVAKRFGKYWNVIGADLKNEPHSVTSPPAAYTDGTGAT--WGMGNPA 226
Query: 346 SYYMQYLLKAIKTIRK 361
+ + + K I K
Sbjct: 227 TDWNLAAERIGKAILK 242
>1rh9_A Endo-beta-mannanase; endo-beta-mannase, retaining, glycoside
hydrolase family 5; 1.50A {Solanum lycopersicum} SCOP:
c.1.8.3
Length = 373
Score = 33.4 bits (75), Expect = 0.22
Identities = 27/187 (14%), Positives = 51/187 (27%), Gaps = 23/187 (12%)
Query: 182 IKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGAFGPDAIYTEKMIKNVIEYA 241
+ S K+NV G + + + VI A
Sbjct: 44 VTNTFQQASKYKMNVARTWAFSHGGSRPLQSA------PGVYNEQMF---QGLDFVISEA 94
Query: 242 RLRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRVEGKTFVGPL---DPTKNVTLDFVRD 298
+ GI +I + + G Q R + T K + V+
Sbjct: 95 KKYGIHLIM---SLVNNWDAFGGKKQYVEWAVQRGQKLTSDDDFFTNPMVKGFYKNNVKV 151
Query: 299 LFTELGQRFPESYVHLGGDEVDFFCWEQNPEIKAFMSTRQWDGPQLQSYYMQYLLKAIKT 358
+ T + +Y D+ WE E + G Q++ + +K+
Sbjct: 152 VLTRVNTITKVAY----KDDPTILSWELINEPRCPSD---LSGKTFQNWV-LEMAGYLKS 203
Query: 359 IRKRSVV 365
I ++
Sbjct: 204 IDSNHLL 210
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET:
ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5
d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Length = 294
Score = 32.9 bits (76), Expect = 0.22
Identities = 15/105 (14%), Positives = 27/105 (25%), Gaps = 40/105 (38%)
Query: 388 DTIVQVWRG---GGLEGASAAVKRVVSAGYKVINSIG--WY-------------LDN--- 426
D++ G A V +VI G + +++
Sbjct: 174 DSMFVAKSLADFDGEVDWEAVENDVRFVAAEVIKRKGATIFGPAVAIYRMVKAVVEDTGE 233
Query: 427 -------LEQEF---ETY---------HGIRVGSIDLTPEEKKLF 452
L+ E+ +G V I L+ EE +
Sbjct: 234 IIPTSMILQGEYGIENVAVGVPAKLGKNGAEVADIKLSDEEIEKL 278
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 32.2 bits (73), Expect = 0.66
Identities = 32/188 (17%), Positives = 60/188 (31%), Gaps = 49/188 (26%)
Query: 267 QIHCHCPHRVEGKTFVGPLDPTKN-----VTLDFVRDL-FTELGQRFPESYVHLGGDEVD 320
I H R+ +P K V ++ DL E + E + H GD+VD
Sbjct: 897 SILEHSGIRLIEPELFNGYNPEKKEMIQEVIVE--EDLEPFEASKETAEQFKHQHGDKVD 954
Query: 321 FFCWEQNPE-IKAFMSTRQWDGPQLQSYYMQYLLKAIKTIRKRSVVWEEVFQDWKNVNGD 379
F + E + P K +R +V ++ W +
Sbjct: 955 IFEIPETGEYSVKLLKGATLYIP--------------KALRFDRLVAGQIPTGW-----N 995
Query: 380 AQAMSMDKDTIVQV-----WRGGGLEGASAAVKRVVSAGYKVINSIGWYLDNLEQEFETY 434
A+ + D I QV + + V+ +++G + + + ++
Sbjct: 996 AKTYGISDDIISQVDPITLF------VLVSVVEAFIASG----------ITDPYEMYKYV 1039
Query: 435 HGIRVGSI 442
H VG+
Sbjct: 1040 HVSEVGNC 1047
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; 2.50A {Bacillus halodurans} PDB:
3o3w_A
Length = 144
Score = 29.7 bits (67), Expect = 1.4
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 386 DKDTIVQVW-RGGGLEGASAAVKRVVSAGYKVINSIG----WYLDNLEQE 430
K+ ++ + G GA+ A + G++V IG W +N E E
Sbjct: 70 SKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEYWRKENGEVE 119
>1kwg_A Beta-galactosidase; TIM barrel, glycoside hydrolase family 42,
trimer, hydrolase; 1.60A {Thermus thermophilus} SCOP:
b.71.1.1 c.1.8.1 c.23.16.5 PDB: 1kwk_A*
Length = 645
Score = 30.2 bits (67), Expect = 1.9
Identities = 22/154 (14%), Positives = 45/154 (29%), Gaps = 13/154 (8%)
Query: 229 YTEKMIKNVIEYARLRGIRVIPEIDTPGHTDSMEPGMPQIHCHCPHRVEGKTFVGPLDPT 288
+ I G++V+ T + P+I P EG+
Sbjct: 48 LEWGWLDEAIATLAAEGLKVVLGTPTATPPKWLVDRYPEIL---PVDREGRRRRFGGRRH 104
Query: 289 KNVTLDFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQNPEIKAFMSTRQWDGPQLQSYY 348
+ R+ + E Y G ++ + E + R + P+ Q +
Sbjct: 105 YCFSSPVYREEARRIVTLLAERY----GGLEAVAGFQTDNEYGCHDTVRCYC-PRCQEAF 159
Query: 349 MQYLLKAIKTIRK-----RSVVWEEVFQDWKNVN 377
+L TI + W + ++ + V
Sbjct: 160 RGWLEARYGTIEALNEAWGTAFWSQRYRSFAEVE 193
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 29.9 bits (68), Expect = 2.4
Identities = 4/34 (11%), Positives = 13/34 (38%)
Query: 388 DTIVQVWRGGGLEGASAAVKRVVSAGYKVINSIG 421
+ V W G + + ++ + +++ G
Sbjct: 183 EDKVLTWSGQEEVVSHTSQVQLSNRAMELLRVKG 216
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 2.00A
{Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Length = 124
Score = 28.5 bits (64), Expect = 2.5
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 386 DKD-TIVQVWRGGGLEGASAAVKRVVSAGYKVINSIG----WYLDNLEQEFETYH 435
D T V GG A+ ++SAG++ G W L E +H
Sbjct: 69 DPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEGWKGMQLPLEHHHHH 123
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 2.6
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 17/43 (39%)
Query: 180 KAIKKQLDIMSYNKLNVLHWHLVDDQSFPYESKKFPSLSLKGA 222
+A+KK L L Y P+L++K
Sbjct: 20 QALKK-LQ----ASLK------------LYADDSAPALAIKAT 45
>1xmt_A Putative acetyltransferase; structural genomics, protein structure
initiative, CESG, AT1G77540, center for eukaryotic
structural genomics; 1.15A {Arabidopsis thaliana} SCOP:
d.108.1.1 PDB: 2q44_A 2evn_A 2il4_A* 2q4y_A*
Length = 103
Score = 27.8 bits (62), Expect = 3.8
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 231 EKMIKNVIEYARLRGIRVIP 250
+ E+A I +IP
Sbjct: 55 SHLCVAAFEHASSHSISIIP 74
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A
{Homo sapiens}
Length = 419
Score = 29.0 bits (65), Expect = 4.2
Identities = 18/94 (19%), Positives = 38/94 (40%), Gaps = 14/94 (14%)
Query: 288 TKNVTLDFVRDLFTELGQRFPESYVHLGG---DEVDFFC-WEQNPEIKAFMSTRQWDGPQ 343
+ F+R + +L Q+F + + F + E+K F S+ + +G Q
Sbjct: 317 GYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEEVKGFFSSLKENGSQ 376
Query: 344 LQSYYMQYLLKAIKTIRKRSVVW----EEVFQDW 373
L+ + + I+TI + + W + + W
Sbjct: 377 LRC-----VQQTIETIEEN-IGWMDKNFDKIRVW 404
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III
pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus
anthracis str}
Length = 268
Score = 28.8 bits (65), Expect = 4.8
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 11/79 (13%)
Query: 23 RLVTNKQVLKDEYVGVLEPFLFKVSGKSCDILEDAIL-----RYTEILKTNWRNLTKFDS 77
R+ T++ +DEY +++ L + G S + ++ I+ L+ K
Sbjct: 27 RMETDRHKTEDEYGMLVKQ-LLEHEGLSFEDVKGIIVSSVVPPIMFALERMCEKYFKIK- 84
Query: 78 VVTAPNIVGKTIKLKIRLL 96
P +VG IK + +
Sbjct: 85 ----PLVVGPGIKTGLNIK 99
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: EPE; 2.39A {Klebsiella pneumoniae
subsp}
Length = 285
Score = 28.3 bits (64), Expect = 6.7
Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 15/89 (16%)
Query: 174 RHYLPIKAIKKQLDIMSY-----------NKLNVLHWHLVDDQSFPY---ESKKFPSLSL 219
RHY+ + I+ L I SY + + H +D + P +
Sbjct: 63 RHYIDVGQIRDNLGIRSYMITSNGARVHDSDGQQIFAHNLDRDIAADLFEIVRNDPKIVT 122
Query: 220 KGAFGPDAIYTEKMIKNVIEYARLRGIRV 248
+ D Y + + + +
Sbjct: 123 -NVYREDEWYMNRHRPEEMRFFKEAVFNY 150
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding
protein, cation-PI interactions, tryptophan BOX, protein
binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB:
1r9q_A*
Length = 309
Score = 28.4 bits (63), Expect = 6.8
Identities = 10/83 (12%), Positives = 19/83 (22%), Gaps = 19/83 (22%)
Query: 325 EQNPEIKAFMSTRQWDGPQLQSYYMQYLLKAIKTIRKRSVVWEEVFQDWKNVNGDAQAMS 384
E+NP + Q + + + + + W +
Sbjct: 246 EKNPAAAKLFAIMQLPVADINA-----QNAIMHDGKASEGDIQGHVDGWIKAHQQ----- 295
Query: 385 MDKDTIVQVWRGGGLEGASAAVK 407
W + A AA K
Sbjct: 296 -----QFDGW----VNEALAAQK 309
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase);
rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A
{Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Length = 388
Score = 28.3 bits (64), Expect = 8.4
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 404 AAVKRVVSAGYKVINSIGWYLDNLEQEFETYHGIR 438
+ R + G + G +++ E+EF +HG
Sbjct: 21 NGLVRALEQG-QWWRMGGDEVNSFEREFAAHHGAA 54
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate,
aspartate aminotransferase, O-antigen; HET: G4M; 1.60A
{Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Length = 391
Score = 27.9 bits (63), Expect = 9.6
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 404 AAVKRVVSAGYKVINSIGWYLDNLEQEFETYHGIR 438
V + + I+S+G ++ E+ F Y G++
Sbjct: 40 DYVLECMDTTW--ISSVGRFIVEFEKAFADYCGVK 72
>1sbp_A Sulfate-binding protein; 1.70A {Salmonella typhimurium} SCOP:
c.94.1.1
Length = 310
Score = 28.0 bits (62), Expect = 9.8
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 290 NVTLDFVRDLFTELGQRFPESYVHLGGDEVDF 321
NV+ D R+L+ + + F + GD V
Sbjct: 7 NVSYDPTRELYEQYNKAFSAHWKQETGDNVVI 38
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.4 bits (60), Expect = 9.9
Identities = 8/67 (11%), Positives = 21/67 (31%), Gaps = 13/67 (19%)
Query: 324 W--EQNPEI--------KAFMSTRQWDGPQLQSYYMQYLLKAIKTIRKRSVVWEEVFQDW 373
W EQ + R+ L+ + + + K + + + ++ F
Sbjct: 90 WREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN-KINNRIADKAFY-- 146
Query: 374 KNVNGDA 380
+ + D
Sbjct: 147 QQPDADI 153
>3txv_A Probable tagatose 6-phosphate kinase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.80A {Sinorhizobium meliloti}
Length = 450
Score = 28.1 bits (62), Expect = 10.0
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 294 DFVRDLFTELGQRFPESYVHLGGDEVDFFCWEQNPEIKAFMSTRQ 338
FV + + FP + LGGD + W+ P +A
Sbjct: 73 RFVGAIADRIE--FPREKILLGGDHLGPNPWKHLPADEAMAKAEA 115
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.419
Gapped
Lambda K H
0.267 0.0543 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,283,527
Number of extensions: 566364
Number of successful extensions: 1795
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1693
Number of HSP's successfully gapped: 51
Length of query: 592
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 493
Effective length of database: 3,937,614
Effective search space: 1941243702
Effective search space used: 1941243702
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.3 bits)