BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13695
         (111 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1H7C|A Chain A, Human Tubulin Chaperone Cofactor A
          Length = 108

 Score = 96.3 bits (238), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 46/101 (45%), Positives = 75/101 (74%)

Query: 2   ADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQ 61
           ADPR++ +KIKTGV++R+ KE+  Y KE   ++E+ EK ++E  + + +KKQ E++QES+
Sbjct: 2   ADPRVRQIKIKTGVVRRLVKERVXYEKEAKQQEEKIEKXRAEDGENYDIKKQAEILQESR 61

Query: 62  MMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILD 102
             IP+CQRR+  AY +L+ IL++E+DL++ E+Y  A  +LD
Sbjct: 62  XXIPDCQRRLEAAYLDLQRILENEKDLEEAEEYKEARLVLD 102


>pdb|3MXZ|A Chain A, Crystal Structure Of Tubulin Folding Cofactor A From
          Arabidopsis Thaliana
          Length = 116

 Score = 68.6 bits (166), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 49/77 (63%)

Query: 6  IKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIP 65
          I+ LKIKT   KRI KE  +Y KEV  E  +    K +G+D + LK+Q  V+ ES+MMIP
Sbjct: 7  IRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRMMIP 66

Query: 66 ECQRRMVRAYEELKSIL 82
          +C +R+  A  +LKS L
Sbjct: 67 DCHKRLESALADLKSTL 83


>pdb|1QSD|A Chain A, Rbl2p, Beta-Tubulin Binding Post-Chaperonin Cofactor
 pdb|1QSD|B Chain B, Rbl2p, Beta-Tubulin Binding Post-Chaperonin Cofactor
          Length = 106

 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 5/99 (5%)

Query: 9   LKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGS-DEFKLKKQLEVIQESQMMIPEC 67
           L IK   LKR+ KE+  Y +E+  ++    K K + S D + LKKQ EV+ +++ ++P  
Sbjct: 6   LDIKVKALKRLTKEEGYYQQELKDQEAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLPTL 65

Query: 68  QRRMVRAYEELKSILDSEQDLKDTEDY----TIALQILD 102
             ++    E+L+  L + Q  +D  D     T A ++LD
Sbjct: 66  YEKIREFKEDLEQFLKTYQGTEDVSDARSAITSAQELLD 104


>pdb|3MS5|A Chain A, Crystal Structure Of Human
           Gamma-Butyrobetaine,2-Oxoglutarate Dioxygenase 1 (Bbox1)
 pdb|3O2G|A Chain A, Crystal Structure Of Human
           Gamma-Butyrobetaine,2-Oxoglutarate Dioxygenase 1 (Bbox1)
          Length = 388

 Score = 25.8 bits (55), Expect = 6.6,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 6   IKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIP 65
           ++ L +  G+   I   K  YI       E Y +F+++   +    KQ     + ++  P
Sbjct: 56  VEALDVNIGIKGLIFDRKKVYIT---WPDEHYSEFQADWLKKRCFSKQARAKLQRELFFP 112

Query: 66  ECQ 68
           ECQ
Sbjct: 113 ECQ 115


>pdb|3N6W|A Chain A, Crystal Structure Of Human Gamma-Butyrobetaine Hydroxylase
          Length = 403

 Score = 25.8 bits (55), Expect = 6.7,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 6   IKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIP 65
           ++ L +  G+   I   K  YI       E Y +F+++   +    KQ     + ++  P
Sbjct: 71  VEALDVNIGIKGLIFDRKKVYIT---WPDEHYSEFQADWLKKRCFSKQARAKLQRELFFP 127

Query: 66  ECQ 68
           ECQ
Sbjct: 128 ECQ 130


>pdb|2GEZ|A Chain A, Crystal Structure Of Potassium-Independent Plant
           Asparaginase
 pdb|2GEZ|C Chain C, Crystal Structure Of Potassium-Independent Plant
           Asparaginase
 pdb|2GEZ|E Chain E, Crystal Structure Of Potassium-Independent Plant
           Asparaginase
 pdb|2GEZ|G Chain G, Crystal Structure Of Potassium-Independent Plant
           Asparaginase
          Length = 195

 Score = 25.0 bits (53), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 18/93 (19%)

Query: 16  LKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIPECQRRMVRAY 75
           L R+  +KT +I         Y  F  +G+ +F  ++ +E +  S ++  E   R+  A 
Sbjct: 111 LARLVMDKTPHI---------YLAF--QGAQDFAKQQGVETVDSSHLITAENVERLKLAI 159

Query: 76  EELKSILDSEQDLKDTEDYTIALQILDDAQKEI 108
           E  +  +D  Q       Y     + DDA+KE+
Sbjct: 160 EANRVQVDYSQ-------YNYPEPVKDDAEKEL 185


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.130    0.335 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,927,290
Number of Sequences: 62578
Number of extensions: 102454
Number of successful extensions: 292
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 269
Number of HSP's gapped (non-prelim): 37
length of query: 111
length of database: 14,973,337
effective HSP length: 75
effective length of query: 36
effective length of database: 10,279,987
effective search space: 370079532
effective search space used: 370079532
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)