BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13695
(111 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6PEC1|TBCA_RAT Tubulin-specific chaperone A OS=Rattus norvegicus GN=Tbca PE=1 SV=1
Length = 108
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 78/102 (76%)
Query: 1 MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQES 60
MADPR++ +KIKTGV+KR+ KEK Y KE ++E+ EK K+E + + +KKQ E++QES
Sbjct: 1 MADPRVRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMKAEDGENYAIKKQAEILQES 60
Query: 61 QMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILD 102
+MMIP+CQRR+ AY +L+ IL+SE+DL++ E+Y A +LD
Sbjct: 61 RMMIPDCQRRLEAAYTDLRQILESEKDLEEAEEYKEARIVLD 102
>sp|P48428|TBCA_MOUSE Tubulin-specific chaperone A OS=Mus musculus GN=Tbca PE=2 SV=3
Length = 108
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 78/102 (76%)
Query: 1 MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQES 60
MADPR++ +KIKTGV++R+ KE+ Y KE ++E+ EK K+E + + +KKQ E++QES
Sbjct: 1 MADPRVRQIKIKTGVVRRLVKERVMYEKEAKQQEEKIEKMKAEDGENYAIKKQAEILQES 60
Query: 61 QMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILD 102
+MMIP+CQRR+ AY +L+ IL+SE+DL++ E+Y A +LD
Sbjct: 61 RMMIPDCQRRLEAAYTDLQQILESEKDLEEAEEYKEARVVLD 102
>sp|O75347|TBCA_HUMAN Tubulin-specific chaperone A OS=Homo sapiens GN=TBCA PE=1 SV=3
Length = 108
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 78/102 (76%)
Query: 1 MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQES 60
MADPR++ +KIKTGV+KR+ KEK Y KE ++E+ EK ++E + + +KKQ E++QES
Sbjct: 1 MADPRVRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQES 60
Query: 61 QMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILD 102
+MMIP+CQRR+ AY +L+ IL++E+DL++ E+Y A +LD
Sbjct: 61 RMMIPDCQRRLEAAYLDLQRILENEKDLEEAEEYKEARLVLD 102
>sp|P48427|TBCA_BOVIN Tubulin-specific chaperone A OS=Bos taurus GN=TBCA PE=1 SV=3
Length = 108
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 77/102 (75%)
Query: 1 MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQES 60
MADPR++ +KIKTGV+KR+ KEK Y KE ++E+ EK K+E + + +KKQ E++QES
Sbjct: 1 MADPRVRQIKIKTGVVKRLVKEKMMYEKEAKQQEEKIEKMKAEDGENYAIKKQAEILQES 60
Query: 61 QMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILD 102
+MMIP+CQRR+ A+ +L +L+SE+DL++ E+Y A +LD
Sbjct: 61 RMMIPDCQRRLEAAHTDLLQLLESEKDLEEAEEYKEARLVLD 102
>sp|P80584|TBCA_RABIT Tubulin-specific chaperone A OS=Oryctolagus cuniculus GN=TBCA PE=1
SV=2
Length = 108
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 77/102 (75%)
Query: 1 MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQES 60
MADPR++ +KIKTGV+KR+ KEK Y KE ++E+ EK ++E + + +KKQ E++QES
Sbjct: 1 MADPRVRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMRAEDGENYAIKKQAEILQES 60
Query: 61 QMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILD 102
+MMIP+CQRR+ A +L+ IL+SE+DL++ E+Y A +LD
Sbjct: 61 RMMIPDCQRRLEAACTDLQQILESEKDLEEAEEYKEARLVLD 102
>sp|P80585|TBCA_CHICK Tubulin-specific chaperone A OS=Gallus gallus GN=TBCA PE=1 SV=2
Length = 108
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 62/78 (79%)
Query: 1 MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQES 60
MADPR++ +KIKTGV+KR+AKEK Y KE ++E+ EK K+E D++ +KKQ E++QES
Sbjct: 1 MADPRLRQIKIKTGVVKRLAKEKVMYEKEAKQQEEKIEKMKAEACDDYGIKKQAEILQES 60
Query: 61 QMMIPECQRRMVRAYEEL 78
+MMIP+CQRR+ A+ +L
Sbjct: 61 RMMIPDCQRRLEIAHADL 78
>sp|O04350|TBCA_ARATH Tubulin-specific chaperone A OS=Arabidopsis thaliana GN=At2g30410
PE=1 SV=2
Length = 113
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 49/77 (63%)
Query: 6 IKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIP 65
I+ LKIKT KRI KE +Y KEV E + K +G+D + LK+Q V+ ES+MMIP
Sbjct: 4 IRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRMMIP 63
Query: 66 ECQRRMVRAYEELKSIL 82
+C +R+ A +LKS L
Sbjct: 64 DCHKRLESALADLKSTL 80
>sp|Q75JC8|TBCA_DICDI Tubulin-specific chaperone A OS=Dictyostelium discoideum GN=tbca
PE=3 SV=3
Length = 113
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 7 KTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKS-EGSDEFKLKKQLEVIQESQMMIP 65
++LKIK LKR+ K+ Y KE ++ E E+FK+ E D + +KKQ+E++ E++ MI
Sbjct: 7 RSLKIKIDALKRLEKDYMLYKKEEQLQIENVERFKADETKDIYDVKKQIEILDENKTMII 66
Query: 66 ECQRRM 71
+ R+
Sbjct: 67 DSVSRV 72
>sp|P48606|TBCA_YEAST Tubulin-specific chaperone A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RBL2 PE=1 SV=1
Length = 106
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 9 LKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGS-DEFKLKKQLEVIQESQMMIPEC 67
L IK LKR+ KE+ Y +E+ ++ K K + S D + LKKQ EV+ +++ ++P
Sbjct: 6 LDIKVKALKRLTKEEGYYQQELKDQEAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLPTL 65
Query: 68 QRRMVRAYEELKSILDSEQDLKDTEDY----TIALQILD 102
++ E+L+ L + Q +D D T A ++LD
Sbjct: 66 YEKIREFKEDLEQFLKTYQGTEDVSDARSAITSAQELLD 104
>sp|Q9Y703|TBCA_SCHPO Tubulin-specific chaperone A OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=alp31 PE=3 SV=1
Length = 119
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 56/105 (53%), Gaps = 1/105 (0%)
Query: 6 IKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIP 65
+++L IKT V+KRI K+ ++ ++R + G D +++ Q V+++ +P
Sbjct: 5 VRSLVIKTNVVKRIIKDVELAHIDINEAEKRVQSKIDNGEDSAEIEHQKFVLKKHLEALP 64
Query: 66 ECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKEIEK 110
+ R+ A +L+SI S+ + T + A + L+ A++ IEK
Sbjct: 65 DALVRLRNATNDLESI-SSDSAYEGTPELEQANEYLEKAKEVIEK 108
>sp|Q9Y0T2|FBXA_DICDI F-box/WD repeat-containing protein A OS=Dictyostelium discoideum
GN=fbxA PE=1 SV=2
Length = 1247
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 21 KEKTTYIKEVG---IEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEE 77
K K T++++ IE +R +KS F K++LE Q + R+ + +E
Sbjct: 164 KCKMTFVQQCDLRDIELQRIPGYKS-----FNSKERLEDFQFLTLFPATVSGRLAKIFES 218
Query: 78 LKSILDSEQDLKDTEDYTIALQILDDAQKEIEK 110
++ L ++KD E I + I++ A+KE+ +
Sbjct: 219 IE--LYISNNVKDIETKDIRISIMEKAEKEVNE 249
>sp|Q54WW4|ASGX_DICDI Putative isoaspartyl peptidase/L-asparaginase OS=Dictyostelium
discoideum GN=DDB_G0279357 PE=3 SV=1
Length = 346
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 43 EGSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKSILDSE 85
+G++EF K LE+++ S +++RA +E K ILD +
Sbjct: 126 KGAEEFAKSKNLEIVEPSFFFTQNRYDQLLRAKDEKKLILDHD 168
>sp|Q8BGE7|TRIM6_MOUSE Tripartite motif-containing protein 6 OS=Mus musculus GN=Trim6 PE=2
SV=1
Length = 488
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 34 QERYEKFKSEGSDEFKLKKQLEVIQES--QMMIPECQRRMVRAYEELKSILDSEQ--DLK 89
QE +K + E + KLK ++ +ES + PE +RR+ +++L+SILD E+ +LK
Sbjct: 145 QESLKKLRREQQEAEKLKALIQEKRESWKSQVEPE-KRRIQTEFKQLRSILDREEQRELK 203
Query: 90 DTE-DYTIALQILDDAQKEI 108
E + L I++ A+ ++
Sbjct: 204 KLEVEERKGLSIIEKAEGDL 223
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.130 0.335
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,793,311
Number of Sequences: 539616
Number of extensions: 1396681
Number of successful extensions: 5885
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 158
Number of HSP's that attempted gapping in prelim test: 5758
Number of HSP's gapped (non-prelim): 281
length of query: 111
length of database: 191,569,459
effective HSP length: 79
effective length of query: 32
effective length of database: 148,939,795
effective search space: 4766073440
effective search space used: 4766073440
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)