Query psy13695
Match_columns 111
No_of_seqs 102 out of 237
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 18:07:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13695.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13695hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3470|consensus 100.0 1.3E-38 2.8E-43 219.2 12.7 106 1-107 1-106 (107)
2 PF02970 TBCA: Tubulin binding 100.0 3.5E-34 7.6E-39 193.3 12.4 90 8-97 1-90 (90)
3 PRK13411 molecular chaperone D 80.2 38 0.00082 29.8 11.3 86 15-104 506-591 (653)
4 PRK00290 dnaK molecular chaper 67.2 78 0.0017 27.5 10.0 83 15-104 504-587 (627)
5 PTZ00186 heat shock 70 kDa pre 65.6 99 0.0021 27.5 10.6 87 15-106 531-617 (657)
6 PLN03184 chloroplast Hsp70; Pr 65.5 99 0.0021 27.4 11.0 83 16-104 544-626 (673)
7 PF02609 Exonuc_VII_S: Exonucl 60.6 26 0.00056 20.8 4.3 38 73-110 3-45 (53)
8 PRK01433 hscA chaperone protei 59.8 1.2E+02 0.0026 26.5 11.6 81 15-102 486-567 (595)
9 KOG3377|consensus 59.0 69 0.0015 23.5 7.4 59 18-76 66-140 (143)
10 PF06160 EzrA: Septation ring 58.8 1.1E+02 0.0023 26.6 9.3 98 12-109 99-204 (560)
11 PTZ00400 DnaK-type molecular c 58.2 1.3E+02 0.0029 26.5 10.6 83 15-104 545-628 (663)
12 CHL00102 rps20 ribosomal prote 58.1 33 0.00071 23.2 4.9 44 68-111 25-68 (93)
13 PRK14067 exodeoxyribonuclease 57.3 33 0.00072 22.5 4.7 41 71-111 9-54 (80)
14 PTZ00009 heat shock 70 kDa pro 57.3 1.4E+02 0.003 26.3 10.4 82 16-101 517-601 (653)
15 PRK14066 exodeoxyribonuclease 56.1 37 0.00079 22.0 4.7 42 70-111 5-51 (75)
16 TIGR02350 prok_dnaK chaperone 54.0 1.4E+02 0.0031 25.6 10.3 41 60-104 545-585 (595)
17 PF03207 OspD: Borrelia outer 51.5 68 0.0015 24.7 6.1 51 54-104 140-192 (254)
18 PF07870 DUF1657: Protein of u 51.5 18 0.0004 21.5 2.5 24 58-81 26-49 (50)
19 PF06013 WXG100: Proteins of 1 51.2 52 0.0011 19.7 5.5 35 8-42 1-35 (86)
20 PF10458 Val_tRNA-synt_C: Valy 51.2 56 0.0012 20.1 5.1 47 16-63 6-54 (66)
21 cd00687 Terpene_cyclase_nonpla 51.2 95 0.0021 23.8 7.2 29 3-31 195-223 (303)
22 PRK14065 exodeoxyribonuclease 49.0 54 0.0012 22.1 4.7 41 71-111 27-72 (86)
23 PRK01885 greB transcription el 48.3 73 0.0016 23.1 5.8 45 62-106 6-61 (157)
24 PRK04778 septation ring format 45.8 1.7E+02 0.0036 25.4 8.4 96 14-109 105-208 (569)
25 PF06160 EzrA: Septation ring 45.3 2E+02 0.0044 24.9 9.5 99 6-106 49-150 (560)
26 PF12329 TMF_DNA_bd: TATA elem 42.5 89 0.0019 19.9 8.3 66 14-81 1-66 (74)
27 PRK05183 hscA chaperone protei 41.3 2.4E+02 0.0053 24.6 10.2 82 16-104 509-591 (616)
28 CHL00094 dnaK heat shock prote 40.7 2.5E+02 0.0054 24.5 10.5 40 61-104 550-589 (621)
29 PRK00226 greA transcription el 40.1 1E+02 0.0022 22.0 5.4 42 62-103 6-58 (157)
30 COG5150 Class 2 transcription 39.9 1.1E+02 0.0023 22.3 5.4 43 18-60 86-129 (148)
31 PF08317 Spc7: Spc7 kinetochor 39.5 2E+02 0.0043 23.0 7.9 63 46-109 164-226 (325)
32 TIGR01461 greB transcription e 39.5 1.4E+02 0.003 21.6 6.1 46 62-107 4-60 (156)
33 TIGR01462 greA transcription e 38.6 99 0.0022 22.0 5.1 42 63-104 2-54 (151)
34 PF04782 DUF632: Protein of un 37.5 2.2E+02 0.0047 23.2 7.4 82 14-102 85-176 (312)
35 PTZ00419 valyl-tRNA synthetase 36.0 1.4E+02 0.003 27.7 6.8 58 14-71 929-987 (995)
36 PF10732 DUF2524: Protein of u 35.0 1.4E+02 0.003 20.0 6.3 19 90-108 35-53 (84)
37 KOG4809|consensus 34.5 2.3E+02 0.005 25.4 7.5 83 21-106 331-415 (654)
38 TIGR00029 S20 ribosomal protei 33.9 1E+02 0.0022 20.5 4.2 36 68-110 25-60 (87)
39 PF13747 DUF4164: Domain of un 33.8 1.4E+02 0.0031 19.7 5.1 22 63-84 5-26 (89)
40 smart00150 SPEC Spectrin repea 33.6 1.1E+02 0.0024 18.5 5.8 32 13-44 30-61 (101)
41 TIGR01216 ATP_synt_epsi ATP sy 33.1 1.7E+02 0.0036 20.3 5.5 39 69-110 90-128 (130)
42 PRK05729 valS valyl-tRNA synth 33.0 1.7E+02 0.0037 26.7 6.8 56 13-68 810-866 (874)
43 PLN02943 aminoacyl-tRNA ligase 32.8 1.7E+02 0.0036 27.3 6.7 57 14-70 889-946 (958)
44 PF02344 Myc-LZ: Myc leucine z 32.7 93 0.002 17.2 4.0 28 17-44 4-31 (32)
45 PF02315 MDH: Methanol dehydro 32.7 45 0.00097 22.7 2.3 35 18-52 58-92 (93)
46 cd00868 Terpene_cyclase_C1 Ter 31.7 1.3E+02 0.0028 22.5 5.0 28 3-30 189-216 (284)
47 PF14817 HAUS5: HAUS augmin-li 31.4 3.9E+02 0.0084 24.0 8.9 70 14-83 93-166 (632)
48 PF05811 DUF842: Eukaryotic pr 31.3 1.9E+02 0.0041 20.3 5.9 56 19-74 59-130 (131)
49 PHA00489 scaffolding protein 30.8 1.4E+02 0.003 20.5 4.5 36 11-46 24-59 (101)
50 KOG0100|consensus 30.7 3.8E+02 0.0082 23.7 8.4 89 15-104 544-633 (663)
51 TIGR00998 8a0101 efflux pump m 30.5 2.6E+02 0.0056 21.7 10.1 13 92-104 146-158 (334)
52 PF00458 WHEP-TRS: WHEP-TRS do 30.1 1.3E+02 0.0029 18.3 4.8 31 28-58 3-33 (56)
53 COG4477 EzrA Negative regulato 29.8 2.8E+02 0.0061 24.7 7.2 61 44-106 93-153 (570)
54 COG1550 Uncharacterized protei 29.4 55 0.0012 22.4 2.4 73 1-89 12-84 (95)
55 PF00631 G-gamma: GGL domain; 29.0 1.4E+02 0.0031 18.3 4.5 33 49-84 6-38 (68)
56 PF03961 DUF342: Protein of un 28.9 3.4E+02 0.0074 22.6 10.0 68 17-84 337-407 (451)
57 PF01649 Ribosomal_S20p: Ribos 28.8 1.6E+02 0.0035 19.3 4.5 37 67-110 23-59 (84)
58 PRK00239 rpsT 30S ribosomal pr 28.1 1.5E+02 0.0032 19.7 4.2 36 68-110 25-60 (88)
59 PF04011 LemA: LemA family; I 27.8 2.4E+02 0.0052 20.5 6.2 44 66-109 92-135 (186)
60 PRK04778 septation ring format 27.6 4.1E+02 0.0088 23.0 8.7 76 30-107 77-155 (569)
61 TIGR01991 HscA Fe-S protein as 27.5 4.1E+02 0.009 23.1 11.3 46 54-103 528-574 (599)
62 PF13525 YfiO: Outer membrane 27.3 2.3E+02 0.0049 20.7 5.6 38 68-108 103-140 (203)
63 cd00939 MetRS_RNA MetRS_RNA bi 27.2 1.4E+02 0.0031 17.7 4.2 30 28-57 3-32 (45)
64 COG0268 RpsT Ribosomal protein 26.6 1.9E+02 0.0041 19.5 4.6 37 68-111 25-61 (88)
65 PF07058 Myosin_HC-like: Myosi 26.5 3.6E+02 0.0078 22.5 6.9 39 45-83 7-45 (351)
66 PF10819 DUF2564: Protein of u 26.4 2E+02 0.0043 19.1 5.5 52 59-110 22-76 (79)
67 PRK14900 valS valyl-tRNA synth 26.4 2.6E+02 0.0056 26.4 6.9 52 14-65 842-894 (1052)
68 PRK00409 recombination and DNA 25.8 5.1E+02 0.011 23.6 12.3 93 14-106 516-621 (782)
69 PRK14068 exodeoxyribonuclease 25.4 2E+02 0.0042 18.6 7.1 58 24-84 6-63 (76)
70 KOG3312|consensus 24.8 1.5E+02 0.0032 22.3 4.1 39 24-62 37-81 (186)
71 COG4477 EzrA Negative regulato 24.0 5.2E+02 0.011 23.1 9.6 95 14-108 104-206 (570)
72 COG0525 ValS Valyl-tRNA synthe 23.9 4.1E+02 0.009 24.9 7.6 64 9-72 809-873 (877)
73 PF09789 DUF2353: Uncharacteri 23.6 2E+02 0.0042 23.7 5.0 35 7-41 2-36 (319)
74 PRK00571 atpC F0F1 ATP synthas 23.1 2.7E+02 0.0057 19.3 5.4 38 69-109 92-129 (135)
75 PLN02381 valyl-tRNA synthetase 23.1 2.9E+02 0.0062 26.2 6.5 58 13-70 996-1054(1066)
76 PF06810 Phage_GP20: Phage min 22.1 3.1E+02 0.0068 19.8 6.6 43 18-60 24-66 (155)
77 PF14048 MBD_C: C-terminal dom 21.5 1.5E+02 0.0032 20.1 3.4 20 48-74 76-95 (96)
78 PF03962 Mnd1: Mnd1 family; I 21.3 3.5E+02 0.0076 20.1 11.4 39 9-47 64-102 (188)
79 PF10475 DUF2450: Protein of u 21.1 4.1E+02 0.0088 20.8 11.1 19 91-109 140-158 (291)
80 PF06031 SERTA: SERTA motif; 20.6 1E+02 0.0022 17.6 2.0 22 2-23 16-37 (38)
No 1
>KOG3470|consensus
Probab=100.00 E-value=1.3e-38 Score=219.16 Aligned_cols=106 Identities=48% Similarity=0.731 Sum_probs=103.7
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy13695 1 MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKS 80 (111)
Q Consensus 1 M~dp~~rqLkIktg~vkRL~KE~~~Y~kE~~~q~~klek~k~~g~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~ 80 (111)
|+|| +|||+||||+|+||+||+.+|++|+.++++|+++|+++|.|+|+||+|++||+||.||||||++||++|++||++
T Consensus 1 Ma~~-vrqL~IKt~vvkRlvKE~~~Yekev~~eeakvakl~~dg~d~ydlkkQeeVl~et~~mlPD~~~RL~~a~~DLe~ 79 (107)
T KOG3470|consen 1 MATP-VRQLVIKTGVVKRLVKEVEYYEKEVKEEEAKVAKLKDDGADPYDLKKQEEVLKETRMMLPDSQRRLRKAYEDLES 79 (107)
T ss_pred CCcc-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHH
Confidence 9999 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCChHHHHHHHHHHHHHHHH
Q psy13695 81 ILDSEQDLKDTEDYTIALQILDDAQKE 107 (111)
Q Consensus 81 ~l~~~~~~~~~ee~~~Ake~L~~a~~~ 107 (111)
++.+++++.++++|..|..+|..++..
T Consensus 80 ~l~~~~~~ee~~e~~~A~~~l~~~k~~ 106 (107)
T KOG3470|consen 80 ILADEQYLEETPELKSANTYLDSAKAE 106 (107)
T ss_pred HHhcccchhccHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998764
No 2
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=100.00 E-value=3.5e-34 Score=193.26 Aligned_cols=90 Identities=49% Similarity=0.800 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccC
Q psy13695 8 TLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKSILDSEQD 87 (111)
Q Consensus 8 qLkIktg~vkRL~KE~~~Y~kE~~~q~~klek~k~~g~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~~~~ 87 (111)
||+||||+|+||+||+.||++|+.++.+||++|+++|+|+|+||+|.+||+||++|||||.+||.+|+.+|+.||++..+
T Consensus 1 QLkIkt~~vkRL~KE~~~Y~kE~~~q~~rle~~k~~~~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~~~~ 80 (90)
T PF02970_consen 1 QLKIKTGVVKRLLKEEASYEKEVEEQEARLEKMKAEGEDEYDIKKQEEVLEETKMMIPDCQQRLEKAVEDLEEFLEEEEG 80 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CceehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHCcC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999998666
Q ss_pred CCChHHHHHH
Q psy13695 88 LKDTEDYTIA 97 (111)
Q Consensus 88 ~~~~ee~~~A 97 (111)
..+++++.+|
T Consensus 81 ~ee~~~akeA 90 (90)
T PF02970_consen 81 LEELEEAKEA 90 (90)
T ss_dssp CCCSHHHHHH
T ss_pred chhHHHHhhC
Confidence 6666666554
No 3
>PRK13411 molecular chaperone DnaK; Provisional
Probab=80.16 E-value=38 Score=29.80 Aligned_cols=86 Identities=17% Similarity=0.248 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCCCChHHH
Q psy13695 15 VLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKSILDSEQDLKDTEDY 94 (111)
Q Consensus 15 ~vkRL~KE~~~Y~kE~~~q~~klek~k~~g~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~~~~~~~~ee~ 94 (111)
.+.|+.++...|..+-.....+.+....-..-.|.++...+ +....+-|+-+.++...+.+++++|.. + ..+.+++
T Consensus 506 ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~--~~~~~~~~~er~~i~~~l~~~~~wL~~-~-~~~~~~~ 581 (653)
T PRK13411 506 EIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLK--ENGELISEELKQRAEQKVEQLEAALTD-P-NISLEEL 581 (653)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HhhccCCHHHHHHHHHHHHHHHHHHhc-C-CCCHHHH
Confidence 46777777777765555554444433322233344444432 246677888899999999999999987 2 2366778
Q ss_pred HHHHHHHHHH
Q psy13695 95 TIALQILDDA 104 (111)
Q Consensus 95 ~~Ake~L~~a 104 (111)
.+..+.|...
T Consensus 582 ~~~~~el~~~ 591 (653)
T PRK13411 582 KQQLEEFQQA 591 (653)
T ss_pred HHHHHHHHHH
Confidence 7777777654
No 4
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=67.15 E-value=78 Score=27.52 Aligned_cols=83 Identities=18% Similarity=0.207 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHhhccCCCChHH
Q psy13695 15 VLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQ-ESQMMIPECQRRMVRAYEELKSILDSEQDLKDTED 93 (111)
Q Consensus 15 ~vkRL~KE~~~Y~kE~~~q~~klek~k~~g~de~~iKkq~~vl~-Et~~mipd~~~RL~~a~~~L~~~l~~~~~~~~~ee 93 (111)
-++++.++...+..+-.....+.+.... -+.-|......|. -...+-|+-+.++...+++++++|..+ +.++
T Consensus 504 ~i~~~~~~~~~~~~~d~~~~~~~eakN~---le~~i~~~~~~l~~~~~~~~~~e~~~i~~~l~~~~~wL~~~----~~~~ 576 (627)
T PRK00290 504 EIERMVKDAEANAEEDKKRKELVEARNQ---ADSLIYQTEKTLKELGDKVPADEKEKIEAAIKELKEALKGE----DKEA 576 (627)
T ss_pred HHHHHHHHHHHhhhcchhHHHHHHHHHH---HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHhcC----CHHH
Confidence 3566666665554433333333332222 2222333333333 334567888999999999999999863 5566
Q ss_pred HHHHHHHHHHH
Q psy13695 94 YTIALQILDDA 104 (111)
Q Consensus 94 ~~~Ake~L~~a 104 (111)
+....+-|...
T Consensus 577 i~~k~~~L~~~ 587 (627)
T PRK00290 577 IKAKTEELTQA 587 (627)
T ss_pred HHHHHHHHHHH
Confidence 77666666543
No 5
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=65.56 E-value=99 Score=27.45 Aligned_cols=87 Identities=13% Similarity=0.162 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCCCChHHH
Q psy13695 15 VLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKSILDSEQDLKDTEDY 94 (111)
Q Consensus 15 ~vkRL~KE~~~Y~kE~~~q~~klek~k~~g~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~~~~~~~~ee~ 94 (111)
.+.|++++..-|..+-.....+++... .-+.-+...+..+++...+.++-+..+...+..++.+|+. ++ .+.+++
T Consensus 531 ~i~~~~~~~~~~~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~ 605 (657)
T PTZ00186 531 QIEQMIRDSEQHAEADRVKRELVEVRN---NAETQLTTAERQLGEWKYVSDAEKENVKTLVAELRKAMEN-PN-VAKDDL 605 (657)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHH---HHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhc-CC-cCHHHH
Confidence 477888888877666655555554222 2334555566666655678888889999999999999974 22 244677
Q ss_pred HHHHHHHHHHHH
Q psy13695 95 TIALQILDDAQK 106 (111)
Q Consensus 95 ~~Ake~L~~a~~ 106 (111)
..+.+-|...-.
T Consensus 606 ~~~~~~l~~~~~ 617 (657)
T PTZ00186 606 AAATDKLQKAVM 617 (657)
T ss_pred HHHHHHHHHHHH
Confidence 777666655433
No 6
>PLN03184 chloroplast Hsp70; Provisional
Probab=65.50 E-value=99 Score=27.42 Aligned_cols=83 Identities=18% Similarity=0.287 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCCCChHHHH
Q psy13695 16 LKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYT 95 (111)
Q Consensus 16 vkRL~KE~~~Y~kE~~~q~~klek~k~~g~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~~~~~~~~ee~~ 95 (111)
++|+.++...+..+-.....+.+....-..-.|.++.... +-...+-|+-+..|...+.+++++|..+ +.+++.
T Consensus 544 i~~~~~~~~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l~--e~~~~~~~eer~~l~~~l~~~e~wL~~~----d~~~ik 617 (673)
T PLN03184 544 VERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLK--ELGDKVPADVKEKVEAKLKELKDAIASG----STQKMK 617 (673)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHH--HHhhhCCHHHHHHHHHHHHHHHHHHhcC----CHHHHH
Confidence 5555555555544433333333222211122233333221 2334667888899999999999999762 445666
Q ss_pred HHHHHHHHH
Q psy13695 96 IALQILDDA 104 (111)
Q Consensus 96 ~Ake~L~~a 104 (111)
.+.+-|.+.
T Consensus 618 ~~~~~l~~~ 626 (673)
T PLN03184 618 DAMAALNQE 626 (673)
T ss_pred HHHHHHHHH
Confidence 555555443
No 7
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=60.62 E-value=26 Score=20.80 Aligned_cols=38 Identities=24% Similarity=0.497 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhh-c-cCC---CChHHHHHHHHHHHHHHHHhhh
Q psy13695 73 RAYEELKSILDS-E-QDL---KDTEDYTIALQILDDAQKEIEK 110 (111)
Q Consensus 73 ~a~~~L~~~l~~-~-~~~---~~~ee~~~Ake~L~~a~~~l~~ 110 (111)
.++..|+.++.. + ++. .....|..|..++..++..|+.
T Consensus 3 e~~~~Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~~c~~~L~~ 45 (53)
T PF02609_consen 3 EAMERLEEIVEKLESGELSLDESLKLYEEGMELIKKCQERLEE 45 (53)
T ss_dssp HHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556665543 2 222 2347788888888877777764
No 8
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=59.81 E-value=1.2e+02 Score=26.52 Aligned_cols=81 Identities=9% Similarity=0.005 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHhhccCCCChHH
Q psy13695 15 VLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQE-SQMMIPECQRRMVRAYEELKSILDSEQDLKDTED 93 (111)
Q Consensus 15 ~vkRL~KE~~~Y~kE~~~q~~klek~k~~g~de~~iKkq~~vl~E-t~~mipd~~~RL~~a~~~L~~~l~~~~~~~~~ee 93 (111)
-+.|+.++..-|..+-.....+++.... -+.-+...+..++| +..+.++-+..+..++.+++.+|+. .+...
T Consensus 486 ei~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~----~~~~~ 558 (595)
T PRK01433 486 EIDIMLENAYKNAKIDYTTRLLQEAVIE---AEALIFNIERAIAELTTLLSESEISIINSLLDNIKEAVHA----RDIIL 558 (595)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhc----CCHHH
Confidence 3788888887676665555554443222 33455566666664 5567888899999999999999975 24456
Q ss_pred HHHHHHHHH
Q psy13695 94 YTIALQILD 102 (111)
Q Consensus 94 ~~~Ake~L~ 102 (111)
+.++.+-|.
T Consensus 559 ~~~~~~~~~ 567 (595)
T PRK01433 559 INNSIKEFK 567 (595)
T ss_pred HHHHHHHHH
Confidence 655555554
No 9
>KOG3377|consensus
Probab=58.96 E-value=69 Score=23.48 Aligned_cols=59 Identities=25% Similarity=0.398 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--------h---cCcchHHHHHHHH-----HHHHHhhhhHHHHHHHHHHHH
Q psy13695 18 RIAKEKTTYIKEVGIEQERYEKFK--------S---EGSDEFKLKKQLE-----VIQESQMMIPECQRRMVRAYE 76 (111)
Q Consensus 18 RL~KE~~~Y~kE~~~q~~klek~k--------~---~g~de~~iKkq~~-----vl~Et~~mipd~~~RL~~a~~ 76 (111)
+|.+=-.|.+.|+.+++.|+++-- + .|..+-+..+|.+ .+++.-..||...+|+..++.
T Consensus 66 pl~~aQ~~~~~El~~FQ~RL~Rc~m~C~Dk~~~~~~~~~~~~~~~~~~e~Cvn~cvd~~v~liP~m~k~MK~al~ 140 (143)
T KOG3377|consen 66 PLTKAQQYVQSELGKFQDRLNRCLMVCNDKFEASKLQGSKRLKAVQQFESCVNKCVDDHVGLIPTMVKRMKEALS 140 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 478888999999999999998733 2 2444567777755 789999999999999999875
No 10
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=58.84 E-value=1.1e+02 Score=26.59 Aligned_cols=98 Identities=16% Similarity=0.216 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhh------
Q psy13695 12 KTGVLKRIAKEKTTYIKEVGIEQERYEKFKSE-GSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKSILDS------ 84 (111)
Q Consensus 12 ktg~vkRL~KE~~~Y~kE~~~q~~klek~k~~-g~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~------ 84 (111)
...+++.+-.....+..++......++.+... ....-.|..-.+.+.+.+.-+-.-...+..|+..|+..|..
T Consensus 99 a~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~ 178 (560)
T PF06160_consen 99 AKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFS 178 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHH
Confidence 34566677777777777888777788777753 23334555555555555555555555555566666655543
Q ss_pred -ccCCCChHHHHHHHHHHHHHHHHhh
Q psy13695 85 -EQDLKDTEDYTIALQILDDAQKEIE 109 (111)
Q Consensus 85 -~~~~~~~ee~~~Ake~L~~a~~~l~ 109 (111)
...+.+.-+|.+|+++|..++..+.
T Consensus 179 ~f~~lt~~GD~~~A~eil~~l~~~~~ 204 (560)
T PF06160_consen 179 EFEELTENGDYLEAREILEKLKEETD 204 (560)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 2335566788999999988877654
No 11
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=58.25 E-value=1.3e+02 Score=26.52 Aligned_cols=83 Identities=14% Similarity=0.211 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHhhccCCCChHH
Q psy13695 15 VLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQ-ESQMMIPECQRRMVRAYEELKSILDSEQDLKDTED 93 (111)
Q Consensus 15 ~vkRL~KE~~~Y~kE~~~q~~klek~k~~g~de~~iKkq~~vl~-Et~~mipd~~~RL~~a~~~L~~~l~~~~~~~~~ee 93 (111)
.++++.++...+..+-.....+.+....-..-.|.++ ..|. -...+-|+-+..+...+.+++++|..+ +.++
T Consensus 545 ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r---~~l~e~~~~~s~~ere~i~~~l~~~~~WL~~~----d~~~ 617 (663)
T PTZ00400 545 EIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVE---KQLSDLKDKISDADKDELKQKITKLRSTLSSE----DVDS 617 (663)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhCCHHHHHHHHHHHHHHHHHHhcC----CHHH
Confidence 3566666665554444333333332222112233333 3343 345677888899999999999999862 4577
Q ss_pred HHHHHHHHHHH
Q psy13695 94 YTIALQILDDA 104 (111)
Q Consensus 94 ~~~Ake~L~~a 104 (111)
+....+-|+..
T Consensus 618 i~~k~~eL~~~ 628 (663)
T PTZ00400 618 IKDKTKQLQEA 628 (663)
T ss_pred HHHHHHHHHHH
Confidence 77777766654
No 12
>CHL00102 rps20 ribosomal protein S20
Probab=58.13 E-value=33 Score=23.21 Aligned_cols=44 Identities=11% Similarity=0.147 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhhhC
Q psy13695 68 QRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKEIEKA 111 (111)
Q Consensus 68 ~~RL~~a~~~L~~~l~~~~~~~~~ee~~~Ake~L~~a~~~l~~~ 111 (111)
..+|..++..+...++......+..+...|.++|..+...|++|
T Consensus 25 kS~~rT~iKk~~~ai~~~~~~~~~~d~~~a~~~l~~a~s~iDka 68 (93)
T CHL00102 25 KSSVKTLIKKYLKNLEDYKTSPNSNNKKKVQETLSSVYSKIDKA 68 (93)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHHH
Confidence 45677777777777765322233345677888888888887764
No 13
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=57.26 E-value=33 Score=22.49 Aligned_cols=41 Identities=24% Similarity=0.413 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhh-c-cCC---CChHHHHHHHHHHHHHHHHhhhC
Q psy13695 71 MVRAYEELKSILDS-E-QDL---KDTEDYTIALQILDDAQKEIEKA 111 (111)
Q Consensus 71 L~~a~~~L~~~l~~-~-~~~---~~~ee~~~Ake~L~~a~~~l~~~ 111 (111)
+..++..|+.++.. + +++ .....|..+..++..++..|+.|
T Consensus 9 fEeal~~LEeIV~~LE~~~l~Lees~~lyeeG~~L~k~C~~~L~~a 54 (80)
T PRK14067 9 FEQQLARLQEIVDALEGGDLPLEESVALYKEGLGLARACREQLAKA 54 (80)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777754 2 332 23478888888888888877654
No 14
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=57.25 E-value=1.4e+02 Score=26.34 Aligned_cols=82 Identities=17% Similarity=0.208 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHhhccCCCChH
Q psy13695 16 LKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQE---SQMMIPECQRRMVRAYEELKSILDSEQDLKDTE 92 (111)
Q Consensus 16 vkRL~KE~~~Y~kE~~~q~~klek~k~~g~de~~iKkq~~vl~E---t~~mipd~~~RL~~a~~~L~~~l~~~~~~~~~e 92 (111)
+.+..++...+..+-.....+.+.. +.-+.-|...+..|.+ ...+-|+-+.+|.+.+.++++||.+ .+..+.+
T Consensus 517 i~~~~~~~~~~~~~d~~~~~~~eak---N~lEs~Iy~~r~~L~~~~~~~~~t~ee~~~l~~~l~~~~~wL~~-~~~~~~~ 592 (653)
T PTZ00009 517 IDRMVNEAEKYKAEDEANRERVEAK---NGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEK-NQLAEKE 592 (653)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH---hhhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHHHHhc-CCchhHH
Confidence 4455555544443333333333222 2222234444555543 4577888999999999999999985 3344555
Q ss_pred HHHHHHHHH
Q psy13695 93 DYTIALQIL 101 (111)
Q Consensus 93 e~~~Ake~L 101 (111)
+|.+-.+-|
T Consensus 593 ~~~~kl~eL 601 (653)
T PTZ00009 593 EFEHKQKEV 601 (653)
T ss_pred HHHHHHHHH
Confidence 555554444
No 15
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=56.11 E-value=37 Score=22.00 Aligned_cols=42 Identities=14% Similarity=0.318 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhh-c-cCC---CChHHHHHHHHHHHHHHHHhhhC
Q psy13695 70 RMVRAYEELKSILDS-E-QDL---KDTEDYTIALQILDDAQKEIEKA 111 (111)
Q Consensus 70 RL~~a~~~L~~~l~~-~-~~~---~~~ee~~~Ake~L~~a~~~l~~~ 111 (111)
....++..|+.++.. + +++ ..-..|..+..++..++..|+.|
T Consensus 5 ~fEeal~~LE~IV~~LE~g~l~Leesl~lyeeG~~L~k~C~~~L~~a 51 (75)
T PRK14066 5 KFETALKKLEEVVKKLEGGELSLDDSLKAFEEGVKHAAFCSKKLDEA 51 (75)
T ss_pred cHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366778888888865 2 332 23477888888888888777654
No 16
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=54.02 E-value=1.4e+02 Score=25.61 Aligned_cols=41 Identities=27% Similarity=0.359 Sum_probs=31.1
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHH
Q psy13695 60 SQMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDA 104 (111)
Q Consensus 60 t~~mipd~~~RL~~a~~~L~~~l~~~~~~~~~ee~~~Ake~L~~a 104 (111)
...+-|+-+.+|...+.+++++|..+ +..++..+.+-|...
T Consensus 545 ~~~~~~~e~~~l~~~l~~~~~wL~~~----d~~~i~~~~~~l~~~ 585 (595)
T TIGR02350 545 GDKLPAEEKEKIEKAVAELKEALKGE----DVEEIKAKTEELQQA 585 (595)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHH
Confidence 45567888899999999999999762 446777776666554
No 17
>PF03207 OspD: Borrelia outer surface protein D (OspD); InterPro: IPR004894 This is a family of outer surface proteins from Borrelia. The function of these proteins is unknown.
Probab=51.51 E-value=68 Score=24.65 Aligned_cols=51 Identities=24% Similarity=0.348 Sum_probs=39.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHhh--ccCCCChHHHHHHHHHHHHH
Q psy13695 54 LEVIQESQMMIPECQRRMVRAYEELKSILDS--EQDLKDTEDYTIALQILDDA 104 (111)
Q Consensus 54 ~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~--~~~~~~~ee~~~Ake~L~~a 104 (111)
-+|-.|.-..-..+.+.+++-+.+-+..++. ++|+.++.++.+|+++++-|
T Consensus 140 ~nvakeay~ltkaaeqnmqklykeq~~~~~~~s~sd~~~s~eikqakeaveia 192 (254)
T PF03207_consen 140 SNVAKEAYSLTKAAEQNMQKLYKEQQKISESESESDYSDSAEIKQAKEAVEIA 192 (254)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHHHH
Confidence 3456666666677778888888888888875 57788899999999998754
No 18
>PF07870 DUF1657: Protein of unknown function (DUF1657); InterPro: IPR012452 This domain appears to be restricted to the Bacillales.
Probab=51.48 E-value=18 Score=21.54 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=20.2
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHH
Q psy13695 58 QESQMMIPECQRRMVRAYEELKSI 81 (111)
Q Consensus 58 ~Et~~mipd~~~RL~~a~~~L~~~ 81 (111)
+++++|+..+...+...+++|+..
T Consensus 26 ~~AK~~y~~~a~~l~~ii~~L~~r 49 (50)
T PF07870_consen 26 QEAKQMYEQAAQQLEEIIQDLEPR 49 (50)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHcc
Confidence 577889999999999999988764
No 19
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=51.24 E-value=52 Score=19.67 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy13695 8 TLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKS 42 (111)
Q Consensus 8 qLkIktg~vkRL~KE~~~Y~kE~~~q~~klek~k~ 42 (111)
||+|..+.|.+..+....+..++...-..+.....
T Consensus 1 qi~vd~~~l~~~a~~~~~~~~~l~~~~~~l~~~~~ 35 (86)
T PF06013_consen 1 QIKVDPEQLRAAAQQLQAQADELQSQLQQLESSID 35 (86)
T ss_dssp HBTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788889999999999988888887777665443
No 20
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=51.19 E-value=56 Score=20.10 Aligned_cols=47 Identities=21% Similarity=0.288 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HhhcCcchHHHHHHHHHHHHHhhh
Q psy13695 16 LKRIAKEKTTYIKEVGIEQERYEK--FKSEGSDEFKLKKQLEVIQESQMM 63 (111)
Q Consensus 16 vkRL~KE~~~Y~kE~~~q~~klek--~k~~g~de~~iKkq~~vl~Et~~m 63 (111)
+.||-|+...+++++.....++.+ |.+. +.+..|..-..-+.+....
T Consensus 6 ~~rL~Kel~kl~~~i~~~~~kL~n~~F~~k-AP~eVve~er~kl~~~~~~ 54 (66)
T PF10458_consen 6 IERLEKELEKLEKEIERLEKKLSNENFVEK-APEEVVEKEREKLEELEEE 54 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSTTHHHH-S-CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcccccc-CCHHHHHHHHHHHHHHHHH
Confidence 578888888888888888777643 2222 3333444444444444433
No 21
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=51.18 E-value=95 Score=23.78 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=25.3
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy13695 3 DPRIKTLKIKTGVLKRIAKEKTTYIKEVG 31 (111)
Q Consensus 3 dp~~rqLkIktg~vkRL~KE~~~Y~kE~~ 31 (111)
+|.++.|.-..+.+-+|..+..||+||..
T Consensus 195 ~~~~~~l~~~~~~~~~l~NDl~S~~KE~~ 223 (303)
T cd00687 195 DPVMRALEALASDAIALVNDIYSYEKEIK 223 (303)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 46677788889999999999999999994
No 22
>PRK14065 exodeoxyribonuclease VII small subunit; Provisional
Probab=48.97 E-value=54 Score=22.10 Aligned_cols=41 Identities=29% Similarity=0.336 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhh--ccC--C-CChHHHHHHHHHHHHHHHHhhhC
Q psy13695 71 MVRAYEELKSILDS--EQD--L-KDTEDYTIALQILDDAQKEIEKA 111 (111)
Q Consensus 71 L~~a~~~L~~~l~~--~~~--~-~~~ee~~~Ake~L~~a~~~l~~~ 111 (111)
++..+..+..+|+. .++ + .+-..|..|...|..|+..|++|
T Consensus 27 FE~klerakeiLe~LndpeisL~eSvkLYkeG~~lL~eAqk~LE~A 72 (86)
T PRK14065 27 FEEHVHSLEQAIDRLNDPNLSLKDGMDLYKTAMQELFLAQKLLENA 72 (86)
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556554 222 2 23467777777777777777654
No 23
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=48.26 E-value=73 Score=23.11 Aligned_cols=45 Identities=16% Similarity=0.179 Sum_probs=34.4
Q ss_pred hhhHHHHHHHHHHHHHHHHH--------Hhh---ccCCCChHHHHHHHHHHHHHHH
Q psy13695 62 MMIPECQRRMVRAYEELKSI--------LDS---EQDLKDTEDYTIALQILDDAQK 106 (111)
Q Consensus 62 ~mipd~~~RL~~a~~~L~~~--------l~~---~~~~~~~ee~~~Ake~L~~a~~ 106 (111)
-|-|....+|+..++.|... +.. ..|+.+..+|.+|++-......
T Consensus 6 ~lT~~g~~~L~~EL~~L~~~~r~e~~~~i~~Ar~~GDl~ENaeY~aAk~~~~~~e~ 61 (157)
T PRK01885 6 YITREGYARLKQELDYLWREERPEVTQKVSWAASLGDRSENADYIYGKKRLREIDR 61 (157)
T ss_pred ccCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCcchhhcHHHHHHHHHHHHH
Confidence 36788888999999988663 322 4778999999999998865544
No 24
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=45.83 E-value=1.7e+02 Score=25.39 Aligned_cols=96 Identities=16% Similarity=0.210 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhh-------c
Q psy13695 14 GVLKRIAKEKTTYIKEVGIEQERYEKFKSE-GSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKSILDS-------E 85 (111)
Q Consensus 14 g~vkRL~KE~~~Y~kE~~~q~~klek~k~~-g~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~-------~ 85 (111)
..+..+-.....++..+.....-++.+... ....-.|.+-...+.+.+.-|-.-...+..|+..|+..|.. -
T Consensus 105 ~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f 184 (569)
T PRK04778 105 HEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQF 184 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHH
Confidence 344555555556666666666667776643 23334555555555555555444444445555555555532 2
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhh
Q psy13695 86 QDLKDTEDYTIALQILDDAQKEIE 109 (111)
Q Consensus 86 ~~~~~~ee~~~Ake~L~~a~~~l~ 109 (111)
..+.++-+|.+|+++|...+..+.
T Consensus 185 ~~l~~~Gd~~~A~e~l~~l~~~~~ 208 (569)
T PRK04778 185 VELTESGDYVEAREILDQLEEELA 208 (569)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHH
Confidence 445667788999999988877654
No 25
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=45.31 E-value=2e+02 Score=24.87 Aligned_cols=99 Identities=19% Similarity=0.280 Sum_probs=62.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy13695 6 IKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKS---EGSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKSIL 82 (111)
Q Consensus 6 ~rqLkIktg~vkRL~KE~~~Y~kE~~~q~~klek~k~---~g~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l 82 (111)
+++|..--.+..+.-+=...|..=+...-..++.+-. +..+-|.+++....+.+...+|-.+...+..-.+.|..++
T Consensus 49 vk~l~l~Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~ 128 (560)
T PF06160_consen 49 VKKLNLTGQTEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELL 128 (560)
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455433333333333333343333344555666553 3478899999999999999999999999999999999999
Q ss_pred hhccCCCChHHHHHHHHHHHHHHH
Q psy13695 83 DSEQDLKDTEDYTIALQILDDAQK 106 (111)
Q Consensus 83 ~~~~~~~~~ee~~~Ake~L~~a~~ 106 (111)
+.+. ....++...++.....+.
T Consensus 129 ~~e~--~nr~~i~~l~~~y~~lrk 150 (560)
T PF06160_consen 129 ESEE--KNREEIEELKEKYRELRK 150 (560)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHH
Confidence 7632 222444444444444443
No 26
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=42.51 E-value=89 Score=19.92 Aligned_cols=66 Identities=24% Similarity=0.242 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy13695 14 GVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKSI 81 (111)
Q Consensus 14 g~vkRL~KE~~~Y~kE~~~q~~klek~k~~g~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~ 81 (111)
|++.++++|.----..+..+-+++.+-.-. ..--||+-..-+.|...-+.....|+...-.++..+
T Consensus 1 ~sl~~~l~EKDe~Ia~L~eEGekLSk~el~--~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l 66 (74)
T PF12329_consen 1 SSLEKKLAEKDEQIAQLMEEGEKLSKKELK--LNNTIKKLRAKIKELEKQIKELKKKLEELEKELESL 66 (74)
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777776666666666666554433 334677777777777777777766666665555443
No 27
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=41.29 E-value=2.4e+02 Score=24.61 Aligned_cols=82 Identities=16% Similarity=0.213 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHhhccCCCChHHH
Q psy13695 16 LKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQ-ESQMMIPECQRRMVRAYEELKSILDSEQDLKDTEDY 94 (111)
Q Consensus 16 vkRL~KE~~~Y~kE~~~q~~klek~k~~g~de~~iKkq~~vl~-Et~~mipd~~~RL~~a~~~L~~~l~~~~~~~~~ee~ 94 (111)
+.++.++...|..+-.....+.+.... -+.-|...+..+. +...+-++-+.++...+.+++.+|+.. +.+++
T Consensus 509 i~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~----d~~~~ 581 (616)
T PRK05183 509 IARMLKDSMSHAEEDMQARALAEQKVE---AERVLEALQAALAADGDLLSAAERAAIDAAMAALREVAQGD----DADAI 581 (616)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHH---HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHH
Confidence 555555555554433333333222111 1122333344443 445677888999999999999999752 44666
Q ss_pred HHHHHHHHHH
Q psy13695 95 TIALQILDDA 104 (111)
Q Consensus 95 ~~Ake~L~~a 104 (111)
..+.+-|...
T Consensus 582 ~~~~~~l~~~ 591 (616)
T PRK05183 582 EAAIKALDKA 591 (616)
T ss_pred HHHHHHHHHH
Confidence 6666665543
No 28
>CHL00094 dnaK heat shock protein 70
Probab=40.71 E-value=2.5e+02 Score=24.50 Aligned_cols=40 Identities=18% Similarity=0.274 Sum_probs=29.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHH
Q psy13695 61 QMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDA 104 (111)
Q Consensus 61 ~~mipd~~~RL~~a~~~L~~~l~~~~~~~~~ee~~~Ake~L~~a 104 (111)
..+-|+-+.+|...+.+++++|..+ +.+++.++.+-|+..
T Consensus 550 ~~~~~~~~~~~~~~l~~~~~wl~~~----~~~~~~~~~~~l~~~ 589 (621)
T CHL00094 550 DKISEEKKEKIENLIKKLRQALQND----NYESIKSLLEELQKA 589 (621)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHH
Confidence 3456888899999999999999762 446666666666543
No 29
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=40.12 E-value=1e+02 Score=22.02 Aligned_cols=42 Identities=24% Similarity=0.298 Sum_probs=31.7
Q ss_pred hhhHHHHHHHHHHHHHHHH--------HHhh---ccCCCChHHHHHHHHHHHH
Q psy13695 62 MMIPECQRRMVRAYEELKS--------ILDS---EQDLKDTEDYTIALQILDD 103 (111)
Q Consensus 62 ~mipd~~~RL~~a~~~L~~--------~l~~---~~~~~~~ee~~~Ake~L~~ 103 (111)
-|.|....+|+..++.|.. .+.. ..|+.+..+|..|+.....
T Consensus 6 ~lt~~g~~~L~~eL~~l~~~~r~~~~~~~~~A~~~gdl~En~~y~~a~~~~~~ 58 (157)
T PRK00226 6 PMTQEGYEKLEEELEELKTVERPEIIEAIAEAREHGDLSENAEYHAAKEEQGF 58 (157)
T ss_pred ccCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHcCCccccccchHHHHHHHH
Confidence 4778888999999999977 3322 3567788889888887764
No 30
>COG5150 Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=39.88 E-value=1.1e+02 Score=22.34 Aligned_cols=43 Identities=28% Similarity=0.346 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC-cchHHHHHHHHHHHHH
Q psy13695 18 RIAKEKTTYIKEVGIEQERYEKFKSEG-SDEFKLKKQLEVIQES 60 (111)
Q Consensus 18 RL~KE~~~Y~kE~~~q~~klek~k~~g-~de~~iKkq~~vl~Et 60 (111)
-++++..-|+--...-..|+.+|+..| ..+--++||++.+.-+
T Consensus 86 ~~~e~~~n~k~~qK~ke~k~sKFk~SGls~eELlrQQeeLf~~a 129 (148)
T COG5150 86 SCMEEHENYKSYQKQKESKISKFKDSGLSMEELLRQQEELFQNA 129 (148)
T ss_pred HHHHHHHHHHHHHhhchhhhhHHHhcCCCHHHHHHHHHHHHHHH
Confidence 345555556555556667899999999 5566778888876433
No 31
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=39.51 E-value=2e+02 Score=23.04 Aligned_cols=63 Identities=30% Similarity=0.357 Sum_probs=42.0
Q ss_pred chHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhh
Q psy13695 46 DEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKEIE 109 (111)
Q Consensus 46 de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~~~~~~~~ee~~~Ake~L~~a~~~l~ 109 (111)
|.-.|.+..+.+.+...-+-.-...|...+..|+....+ .+.-+-+++..+++-|......++
T Consensus 164 D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e-~~~~D~~eL~~lr~eL~~~~~~i~ 226 (325)
T PF08317_consen 164 DYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE-IESCDQEELEALRQELAEQKEEIE 226 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhcCHHHHHHHHHHHHHHHHHHH
Confidence 445566666777665555555556666667766666554 445566889999998887776654
No 32
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=39.48 E-value=1.4e+02 Score=21.64 Aligned_cols=46 Identities=17% Similarity=0.281 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHHHHHHHHHH--------Hh---hccCCCChHHHHHHHHHHHHHHHH
Q psy13695 62 MMIPECQRRMVRAYEELKSI--------LD---SEQDLKDTEDYTIALQILDDAQKE 107 (111)
Q Consensus 62 ~mipd~~~RL~~a~~~L~~~--------l~---~~~~~~~~ee~~~Ake~L~~a~~~ 107 (111)
.|=|....||+..+..|... |. ...|+.+..+|.+|++-+......
T Consensus 4 ~lT~~G~~~L~~El~~L~~~~r~~~~~~i~~Ar~~GDlsENaeY~aak~~~~~le~r 60 (156)
T TIGR01461 4 LITPEGYEKLKQELNYLWREERPEVTQKVTWAASLGDRSENADYQYGKKRLREIDRR 60 (156)
T ss_pred ccCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHHH
Confidence 35677778888888887642 12 246788999999999988765543
No 33
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=38.57 E-value=99 Score=22.00 Aligned_cols=42 Identities=19% Similarity=0.285 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHHHHH--------Hhh---ccCCCChHHHHHHHHHHHHH
Q psy13695 63 MIPECQRRMVRAYEELKSI--------LDS---EQDLKDTEDYTIALQILDDA 104 (111)
Q Consensus 63 mipd~~~RL~~a~~~L~~~--------l~~---~~~~~~~ee~~~Ake~L~~a 104 (111)
|-|....||+..++.|... +.. ..|+.+..+|.+|++.....
T Consensus 2 ~T~~g~~~L~~el~~L~~~~r~~~~~~~~~a~~~gDl~Ena~y~aak~~~~~~ 54 (151)
T TIGR01462 2 LTQEGYEKLKEELEYLKTVKRPEISEEIAEAREHGDLSENAEYHAAKEEQGFN 54 (151)
T ss_pred cCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHCCChhhccchHHHHHHHHHH
Confidence 4577888999999988764 322 46788889999999887643
No 34
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=37.49 E-value=2.2e+02 Score=23.19 Aligned_cols=82 Identities=21% Similarity=0.321 Sum_probs=50.6
Q ss_pred HHHHHHHH-HHHHHH---------HHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Q psy13695 14 GVLKRIAK-EKTTYI---------KEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKSILD 83 (111)
Q Consensus 14 g~vkRL~K-E~~~Y~---------kE~~~q~~klek~k~~g~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~ 83 (111)
+++.||.- |+..|+ .+.+.--..+.++...|+|.. .++-|+..|-+..+|+.-++.....+-.
T Consensus 85 sTLdkLyaWEKKLY~EVKa~E~~r~~yeKK~~~Lr~~d~kg~~~~-------kidkTra~v~~L~tri~Vaiq~v~siS~ 157 (312)
T PF04782_consen 85 STLDKLYAWEKKLYDEVKAEEKLRIEYEKKCKQLRKQDAKGADSS-------KIDKTRASVKDLHTRIRVAIQSVDSISK 157 (312)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHhCCccHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666643 344443 333333334455555666644 5688999999999999999888877665
Q ss_pred hccCCCChHHHHHHHHHHH
Q psy13695 84 SEQDLKDTEDYTIALQILD 102 (111)
Q Consensus 84 ~~~~~~~~ee~~~Ake~L~ 102 (111)
.=..+.++|.|-+=-+++.
T Consensus 158 ~I~kLRDeEL~PQL~eLi~ 176 (312)
T PF04782_consen 158 RIEKLRDEELYPQLVELIQ 176 (312)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4334566666655555543
No 35
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=35.97 E-value=1.4e+02 Score=27.73 Aligned_cols=58 Identities=16% Similarity=0.051 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcchHHHHHHHHHHHHHhhhhHHHHHHH
Q psy13695 14 GVLKRIAKEKTTYIKEVGIEQERYEKFKS-EGSDEFKLKKQLEVIQESQMMIPECQRRM 71 (111)
Q Consensus 14 g~vkRL~KE~~~Y~kE~~~q~~klek~k~-~g~de~~iKkq~~vl~Et~~mipd~~~RL 71 (111)
.-+.||.|+...+++|++..+.++.+-.- +.+.+..+.+..+-+.+.+..+-....+|
T Consensus 929 ~E~~rL~K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~kl~~~~~~l~~l~~~l 987 (995)
T PTZ00419 929 KELAKLEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEKIDELNEEIKQLEQAI 987 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44789999999999999988888765332 24677788888888887777665544443
No 36
>PF10732 DUF2524: Protein of unknown function (DUF2524); InterPro: IPR019668 This entry represents proteins with unknown function, and appear to be restricted to the Bacillaceae.
Probab=35.00 E-value=1.4e+02 Score=20.00 Aligned_cols=19 Identities=42% Similarity=0.691 Sum_probs=9.8
Q ss_pred ChHHHHHHHHHHHHHHHHh
Q psy13695 90 DTEDYTIALQILDDAQKEI 108 (111)
Q Consensus 90 ~~ee~~~Ake~L~~a~~~l 108 (111)
++.+|..|...|+.|--.|
T Consensus 35 nd~eYt~Aq~~LE~a~neL 53 (84)
T PF10732_consen 35 NDEEYTEAQQMLEEAYNEL 53 (84)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 3455555555555554443
No 37
>KOG4809|consensus
Probab=34.53 E-value=2.3e+02 Score=25.45 Aligned_cols=83 Identities=18% Similarity=0.170 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcc-C-CCChHHHHHHH
Q psy13695 21 KEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKSILDSEQ-D-LKDTEDYTIAL 98 (111)
Q Consensus 21 KE~~~Y~kE~~~q~~klek~k~~g~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~~~-~-~~~~ee~~~Ak 98 (111)
-+..+|++|.....++|..+.++- -+---+.--|+|.-.-+..+--.+..-+.+|+=+|+..+ . ++=...+.+|+
T Consensus 331 EeIe~~~ke~kdLkEkv~~lq~~l---~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh 407 (654)
T KOG4809|consen 331 EEIESFRKENKDLKEKVNALQAEL---TEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAH 407 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888888732 222233333445444555555555556666666665421 1 23345667777
Q ss_pred HHHHHHHH
Q psy13695 99 QILDDAQK 106 (111)
Q Consensus 99 e~L~~a~~ 106 (111)
+++.+|..
T Consensus 408 ~~~ddar~ 415 (654)
T KOG4809|consen 408 NIEDDARM 415 (654)
T ss_pred HhhHhhhc
Confidence 77766653
No 38
>TIGR00029 S20 ribosomal protein S20. This family consists of bacterial (and chloroplast) examples of the bacteria ribosomal small subunit protein S20.
Probab=33.91 E-value=1e+02 Score=20.49 Aligned_cols=36 Identities=11% Similarity=0.266 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhhh
Q psy13695 68 QRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKEIEK 110 (111)
Q Consensus 68 ~~RL~~a~~~L~~~l~~~~~~~~~ee~~~Ake~L~~a~~~l~~ 110 (111)
..+|..++..+...++.++ ...|.++|..+...+++
T Consensus 25 kS~~kT~iKk~~~ai~~~d-------~~~a~~~l~~a~s~iDk 60 (87)
T TIGR00029 25 KSKMKTIIKKVYAAIAAGD-------KDKAQEAFKEAAKKLDR 60 (87)
T ss_pred HHHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHH
Confidence 4567777777777776622 24566666666666654
No 39
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=33.80 E-value=1.4e+02 Score=19.70 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh
Q psy13695 63 MIPECQRRMVRAYEELKSILDS 84 (111)
Q Consensus 63 mipd~~~RL~~a~~~L~~~l~~ 84 (111)
-++.+.+||..|++.|+..+..
T Consensus 5 ~le~al~rL~~aid~LE~~v~~ 26 (89)
T PF13747_consen 5 SLEAALTRLEAAIDRLEKAVDR 26 (89)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3678889999999999999875
No 40
>smart00150 SPEC Spectrin repeats.
Probab=33.64 E-value=1.1e+02 Score=18.48 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy13695 13 TGVLKRIAKEKTTYIKEVGIEQERYEKFKSEG 44 (111)
Q Consensus 13 tg~vkRL~KE~~~Y~kE~~~q~~klek~k~~g 44 (111)
...|..+++++..++.|+.....+++.+...|
T Consensus 30 ~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~ 61 (101)
T smart00150 30 LESVEALLKKHEALEAELEAHEERVEALNELG 61 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45678888888888888888888888777654
No 41
>TIGR01216 ATP_synt_epsi ATP synthase, F1 epsilon subunit (delta in mitochondria). This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation.
Probab=33.05 E-value=1.7e+02 Score=20.27 Aligned_cols=39 Identities=28% Similarity=0.387 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhhh
Q psy13695 69 RRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKEIEK 110 (111)
Q Consensus 69 ~RL~~a~~~L~~~l~~~~~~~~~ee~~~Ake~L~~a~~~l~~ 110 (111)
.|++.++..+++.|.. ..+..++..|+..|..+...|..
T Consensus 90 ~~a~~~~~~ae~~l~~---~~~~~~~~~a~~~l~~a~~rl~~ 128 (130)
T TIGR01216 90 AEAEKALEAAEKLLES---AEDDKDLAEALLKLKKARAQLEA 128 (130)
T ss_pred HHHHHHHHHHHHHHhh---CCChHHHHHHHHHHHHHHHHHHh
Confidence 4666667777776755 34557888899999888876653
No 42
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=33.01 E-value=1.7e+02 Score=26.70 Aligned_cols=56 Identities=18% Similarity=0.167 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcchHHHHHHHHHHHHHhhhhHHHH
Q psy13695 13 TGVLKRIAKEKTTYIKEVGIEQERYEKFKS-EGSDEFKLKKQLEVIQESQMMIPECQ 68 (111)
Q Consensus 13 tg~vkRL~KE~~~Y~kE~~~q~~klek~k~-~g~de~~iKkq~~vl~Et~~mipd~~ 68 (111)
..-+.||.|+...+++|++..+.++.+-.- +.+.+..+.+..+-+.+.+..+-...
T Consensus 810 ~~e~~rL~K~l~kl~~ei~~~~~kL~n~~F~~KAP~~vve~e~~kl~~~~~~~~~l~ 866 (874)
T PRK05729 810 EAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKLK 866 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344789999999999999888888765332 23555666666666666555444433
No 43
>PLN02943 aminoacyl-tRNA ligase
Probab=32.83 E-value=1.7e+02 Score=27.28 Aligned_cols=57 Identities=19% Similarity=0.132 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcchHHHHHHHHHHHHHhhhhHHHHHH
Q psy13695 14 GVLKRIAKEKTTYIKEVGIEQERYEKFKS-EGSDEFKLKKQLEVIQESQMMIPECQRR 70 (111)
Q Consensus 14 g~vkRL~KE~~~Y~kE~~~q~~klek~k~-~g~de~~iKkq~~vl~Et~~mipd~~~R 70 (111)
.-+.||-|+..-.++|++..+.++.+-.- +.+.+..+.+..+-+.+.+..+-....+
T Consensus 889 ~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~evv~~e~~kl~~~~~~l~~~~~~ 946 (958)
T PLN02943 889 AEVERLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAAEAEEKIKLTKNR 946 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788999999999998888888765332 2356667777777777666665544443
No 44
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=32.66 E-value=93 Score=17.22 Aligned_cols=28 Identities=11% Similarity=0.236 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy13695 17 KRIAKEKTTYIKEVGIEQERYEKFKSEG 44 (111)
Q Consensus 17 kRL~KE~~~Y~kE~~~q~~klek~k~~g 44 (111)
.||+-|...-++--++.+.+++.+...+
T Consensus 4 qkL~sekeqLrrr~eqLK~kLeqlrnS~ 31 (32)
T PF02344_consen 4 QKLISEKEQLRRRREQLKHKLEQLRNSC 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5788888888888888888999887654
No 45
>PF02315 MDH: Methanol dehydrogenase beta subunit; InterPro: IPR003420 Methanol dehydrogenase (MDH) (1.1.99.8 from EC), found in Gram-negative bacteria, is a pyrroloquinoline quinone (PQQ)-containing enzyme which oxidises methanol to formaldehyde. It is located in the periplasmic space and passes electrons derived from the oxidation of methanol to the soluble cytochrome cL []. The enzyme is a tetramer composed of two large alpha subunits and two smaller beta subunits. The alpha subunit binds the PQQ cofactor and contains the active site, while the function of the beta subunit is currently unknown []. The alpha subunit forms an eight-bladed propeller structure, with several novel tryptophan-docking motifs linking the individual blades together. This entry represents the beta subunit of methanol dehydrogenase.; GO: 0004022 alcohol dehydrogenase (NAD) activity, 0015946 methanol oxidation, 0055114 oxidation-reduction process; PDB: 1LRW_B 2D0V_J 2AD6_B 1G72_B 4AAH_D 2AD8_D 2AD7_D 1H4J_D 1H4I_B 1W6S_B ....
Probab=32.66 E-value=45 Score=22.71 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHH
Q psy13695 18 RIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKK 52 (111)
Q Consensus 18 RL~KE~~~Y~kE~~~q~~klek~k~~g~de~~iKk 52 (111)
-|-|...+-+---+....|++.|+..|.=.||+++
T Consensus 58 ELnKQ~~si~~me~RN~kR~~~fkkTGk~~ydV~k 92 (93)
T PF02315_consen 58 ELNKQQESIKAMEERNAKRVENFKKTGKFVYDVKK 92 (93)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHSS--SSGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCceEEeccc
Confidence 34555555555556667788888888888888764
No 46
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=31.67 E-value=1.3e+02 Score=22.45 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=24.4
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHH
Q psy13695 3 DPRIKTLKIKTGVLKRIAKEKTTYIKEV 30 (111)
Q Consensus 3 dp~~rqLkIktg~vkRL~KE~~~Y~kE~ 30 (111)
.|..+.|.-..+.+-+|..+..||.||.
T Consensus 189 ~~~~~~l~~~~~~~~~l~NDl~S~~kE~ 216 (284)
T cd00868 189 LPSYPKLVRASSTIGRLLNDIASYEKEI 216 (284)
T ss_pred hhhhHHHHHHHHHHHHHhccchHHHHHH
Confidence 3567778888889999999999999998
No 47
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=31.38 E-value=3.9e+02 Score=24.01 Aligned_cols=70 Identities=17% Similarity=0.270 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Q psy13695 14 GVLKRIAKEKTTYIKEVGIEQERYEKFKSE----GSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKSILD 83 (111)
Q Consensus 14 g~vkRL~KE~~~Y~kE~~~q~~klek~k~~----g~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~ 83 (111)
+.+.+|-++...-+.|+..++..++++..+ ..-...+.-.....++....+-+-.+||...++-|++.-.
T Consensus 93 aei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~~~q~~~R 166 (632)
T PF14817_consen 93 AEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVEQLQDIQR 166 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888999999999999999988888643 4566788888999999999999999999999999998753
No 48
>PF05811 DUF842: Eukaryotic protein of unknown function (DUF842); InterPro: IPR008560 This family consists of a number of conserved eukaryotic proteins of unknown function. The sequences carry three sets of CxxxC motifs, which might suggest a type of zinc-finger formation.
Probab=31.31 E-value=1.9e+02 Score=20.33 Aligned_cols=56 Identities=16% Similarity=0.317 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--Hh------h---cCcchHHHHHH-----HHHHHHHhhhhHHHHHHHHHH
Q psy13695 19 IAKEKTTYIKEVGIEQERYEK--FK------S---EGSDEFKLKKQ-----LEVIQESQMMIPECQRRMVRA 74 (111)
Q Consensus 19 L~KE~~~Y~kE~~~q~~klek--~k------~---~g~de~~iKkq-----~~vl~Et~~mipd~~~RL~~a 74 (111)
|.+=-.+-+.|+...+.||.+ |. + .|..+.++.++ ....++...+||...+||..+
T Consensus 59 l~~aq~~vq~El~~FQ~rlqrC~~~C~dk~~d~~~~~~~~~~~~~~~e~C~~~Cvd~hi~llP~l~~r~k~~ 130 (131)
T PF05811_consen 59 LQQAQNYVQNELEQFQNRLQRCVMHCQDKAKDKMDPNPNESDAEKQLESCVNKCVDDHIKLLPSLTKRMKKS 130 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Confidence 334455678899999999887 22 1 23455666665 456899999999999999875
No 49
>PHA00489 scaffolding protein
Probab=30.81 E-value=1.4e+02 Score=20.49 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Q psy13695 11 IKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSD 46 (111)
Q Consensus 11 Iktg~vkRL~KE~~~Y~kE~~~q~~klek~k~~g~d 46 (111)
=+|.++..|--.+.|++-|..+...-++++.++..|
T Consensus 24 ErTeaLqqlr~~ygSf~sEy~elT~a~eKl~aek~D 59 (101)
T PHA00489 24 ERTEALQQLRESYGSFHSEYEELTEALEKLTAEKED 59 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 368889999999999999999999999999887544
No 50
>KOG0100|consensus
Probab=30.68 E-value=3.8e+02 Score=23.65 Aligned_cols=89 Identities=19% Similarity=0.208 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHhhccCCCChHH
Q psy13695 15 VLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQE-SQMMIPECQRRMVRAYEELKSILDSEQDLKDTED 93 (111)
Q Consensus 15 ~vkRL~KE~~~Y~kE~~~q~~klek~k~~g~de~~iKkq~~vl~E-t~~mipd~~~RL~~a~~~L~~~l~~~~~~~~~ee 93 (111)
-+.|+++|-.-+-.|=...+++++.-..=..-.|.+|.|..=-+- ...+-++-...+..|+.+--+||++. ..++.|+
T Consensus 544 dIerMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi~dkekLg~Kl~~edKe~~e~av~e~~eWL~~n-~~a~~Ee 622 (663)
T KOG0100|consen 544 DIERMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQIGDKEKLGGKLSDEDKETIEDAVEEALEWLESN-QDASKEE 622 (663)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhccCchhHhcccCChhHHHHHHHHHHHHHHHHhhc-ccccHHH
Confidence 357888888888877777777776655444566888888532211 23456777888999999999999884 5667788
Q ss_pred HHHHHHHHHHH
Q psy13695 94 YTIALQILDDA 104 (111)
Q Consensus 94 ~~~Ake~L~~a 104 (111)
|.+-+.-|+..
T Consensus 623 ~~ek~kele~v 633 (663)
T KOG0100|consen 623 FKEKKKELEAV 633 (663)
T ss_pred HHHHHHHHHHH
Confidence 88877766643
No 51
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=30.50 E-value=2.6e+02 Score=21.66 Aligned_cols=13 Identities=31% Similarity=0.204 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q psy13695 92 EDYTIALQILDDA 104 (111)
Q Consensus 92 ee~~~Ake~L~~a 104 (111)
.+|..|+..+..+
T Consensus 146 ~~~~~a~~~~~~a 158 (334)
T TIGR00998 146 EELDHARKALLSA 158 (334)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444333333
No 52
>PF00458 WHEP-TRS: WHEP-TRS domain; InterPro: IPR000738 A conserved domain of 46 amino acids, called WHEP-TRS has been shown [] to exist in a number of higher eukaryote aminoacyl-transfer RNA synthetases. This domain is present one to six times in the several enzymes. There are three copies in mammalian multifunctional aminoacyl-tRNA synthetase in a region that separates the N-terminal glutamyl-tRNA synthetase domain from the C-terminal prolyl-tRNA synthetase domain, and six copies in the intercatalytic region of the Drosophila enzyme. The domain is found at the N-terminal extremity of the mammalian tryptophanyl- tRNA synthetase and histidyl-tRNA synthetase, and the mammalian, insect, nematode and plant glycyl- tRNA synthetases []. This domain could contain a central alpha-helical region and may play a role in the association of tRNA-synthetases into multienzyme complexes.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation; PDB: 1R1B_A 1D2D_A 1X59_A 1FYJ_A 2ZT8_A 2ZXF_A 2ZT7_A 2ZT6_A 2PME_A 2ZT5_A ....
Probab=30.15 E-value=1.3e+02 Score=18.31 Aligned_cols=31 Identities=13% Similarity=0.322 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHHHHHH
Q psy13695 28 KEVGIEQERYEKFKSEGSDEFKLKKQLEVIQ 58 (111)
Q Consensus 28 kE~~~q~~klek~k~~g~de~~iKkq~~vl~ 58 (111)
.++..|-..|-+||+++++.-+|......|-
T Consensus 3 ~~I~~QG~~VR~LKa~ka~k~~i~~aV~~Ll 33 (56)
T PF00458_consen 3 AQIAAQGDKVRKLKAEKADKEEIDAAVAKLL 33 (56)
T ss_dssp HHHHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCcHHHHHHHHHHHH
Confidence 5678888999999999888777776666553
No 53
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=29.83 E-value=2.8e+02 Score=24.69 Aligned_cols=61 Identities=18% Similarity=0.414 Sum_probs=49.6
Q ss_pred CcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHH
Q psy13695 44 GSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQK 106 (111)
Q Consensus 44 g~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~~~~~~~~ee~~~Ake~L~~a~~ 106 (111)
.+|-|.-.+....++....++.-...-+..-+.+|..++..++ ++++++..+++..+..+.
T Consensus 93 ~~dkfrF~kA~~~i~~ie~~l~~iE~~i~~il~~l~~Lv~sEe--kN~~~i~~~~ely~elr~ 153 (570)
T COG4477 93 LADKFRFNKAKHEIDDIEQQLTLIEEDIEQILEDLNELVESEE--KNSEEIDHVLELYEELRR 153 (570)
T ss_pred hhhhhhhHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHH
Confidence 3899999999999999999999999999999999999887633 456777777777665443
No 54
>COG1550 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.38 E-value=55 Score=22.41 Aligned_cols=73 Identities=16% Similarity=0.253 Sum_probs=46.3
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy13695 1 MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKS 80 (111)
Q Consensus 1 M~dp~~rqLkIktg~vkRL~KE~~~Y~kE~~~q~~klek~k~~g~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~ 80 (111)
|.|+ +.||=|-++|+|++-++. .|..=-.+ .-|.+|+.+=..+ +-.||..-.......++.-..
T Consensus 12 ~~~v--~sLKeKRavlr~iv~rLk----------~KFnvSva-E~~~qD~~qr~~I---giA~Vs~Dr~~~e~~l~~~~~ 75 (95)
T COG1550 12 LYDV--RSLKEKRAVLRPIVTRLK----------NKFNVSVA-ETGYQDLWQRAEI---GIATVSSDRAVAERVLDRALD 75 (95)
T ss_pred eccc--ccHHHHHHHHHHHHHHHH----------Hhcceeee-ecCchhhhhhhee---eEEEEeccHHHHHHHHHHHHH
Confidence 4566 999999999999986542 22111112 2455666654333 456777777777777777777
Q ss_pred HHhhccCCC
Q psy13695 81 ILDSEQDLK 89 (111)
Q Consensus 81 ~l~~~~~~~ 89 (111)
|++.++++.
T Consensus 76 ~id~~p~~E 84 (95)
T COG1550 76 FIDAEPEFE 84 (95)
T ss_pred HHHcCCchh
Confidence 887766554
No 55
>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide. The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....
Probab=29.00 E-value=1.4e+02 Score=18.29 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhh
Q psy13695 49 KLKKQLEVIQESQMMIPECQRRMVRAYEELKSILDS 84 (111)
Q Consensus 49 ~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~ 84 (111)
.++++.+.|++.... +.. ++..++.+|.+|++.
T Consensus 6 ~l~~ei~~L~~el~~-~r~--~vS~a~~~li~y~~~ 38 (68)
T PF00631_consen 6 QLKREIEQLRQELER-ERI--KVSKACKELIEYCES 38 (68)
T ss_dssp HHHHHHHHHHHHHTS-------HHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHcc-cce--eHHHHHHHHHHHhcC
Confidence 456677777777666 333 888999999999885
No 56
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=28.90 E-value=3.4e+02 Score=22.60 Aligned_cols=68 Identities=21% Similarity=0.277 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh---cCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhh
Q psy13695 17 KRIAKEKTTYIKEVGIEQERYEKFKS---EGSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKSILDS 84 (111)
Q Consensus 17 kRL~KE~~~Y~kE~~~q~~klek~k~---~g~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~ 84 (111)
++|.++......++...+..+.+++. .+...-+.+.+...+.++...+-.-...|..-+..|++.+..
T Consensus 337 ~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 337 EELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444445555555555544443 334455677777778888877777778888888888777765
No 57
>PF01649 Ribosomal_S20p: Ribosomal protein S20; InterPro: IPR002583 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family consists of bacterial (and chloroplast) examples of the ribosomal small subunit protein S20. Bacterial ribosomal protein S20 forms part of the 30S ribosomal subunit, and interacts with 16S rRNA.; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1I94_T 1FJG_T 4DH9_T 3KNJ_T 3TVG_W 3UYF_W 3V28_T 3KIS_t 3HUY_T 1HNX_T ....
Probab=28.83 E-value=1.6e+02 Score=19.26 Aligned_cols=37 Identities=19% Similarity=0.298 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhhh
Q psy13695 67 CQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKEIEK 110 (111)
Q Consensus 67 ~~~RL~~a~~~L~~~l~~~~~~~~~ee~~~Ake~L~~a~~~l~~ 110 (111)
...+|..++..+...++.++ ...|.++|..+...|++
T Consensus 23 ~kS~~rT~iKk~~~ai~~~~-------~~~a~~~l~~a~s~iDk 59 (84)
T PF01649_consen 23 RKSRVRTAIKKFREAIEAGD-------KEEAKELLRKAYSAIDK 59 (84)
T ss_dssp HHHHHHHHHHHHHHHHHTT--------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccC-------hHHHHHHHHHHHHHHHH
Confidence 34577777777777777621 12566666666666554
No 58
>PRK00239 rpsT 30S ribosomal protein S20; Reviewed
Probab=28.06 E-value=1.5e+02 Score=19.71 Aligned_cols=36 Identities=25% Similarity=0.356 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhhh
Q psy13695 68 QRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKEIEK 110 (111)
Q Consensus 68 ~~RL~~a~~~L~~~l~~~~~~~~~ee~~~Ake~L~~a~~~l~~ 110 (111)
..+|..++..+...++. .+..+|..+|..+...+++
T Consensus 25 kS~~kT~iKk~~~ai~~-------~~~~~a~~~~~~a~s~iDk 60 (88)
T PRK00239 25 KSRVRTAIKKVEAAIAA-------GDKEAAEEALKAAQSKIDK 60 (88)
T ss_pred HHHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHHHHH
Confidence 44566666666666665 1245566666666666654
No 59
>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT. The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.
Probab=27.78 E-value=2.4e+02 Score=20.47 Aligned_cols=44 Identities=16% Similarity=0.407 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhh
Q psy13695 66 ECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKEIE 109 (111)
Q Consensus 66 d~~~RL~~a~~~L~~~l~~~~~~~~~ee~~~Ake~L~~a~~~l~ 109 (111)
+....|..++..|-..++..|+++.++.|.....-|......+.
T Consensus 92 ~~~~~l~~al~~l~~~~e~yP~Lka~~~~~~l~~~l~~~E~~I~ 135 (186)
T PF04011_consen 92 QAEAELSQALSRLLAVVENYPELKADENFQQLMAQLEETENRIA 135 (186)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777777788888888888888877665543
No 60
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=27.61 E-value=4.1e+02 Score=23.02 Aligned_cols=76 Identities=22% Similarity=0.306 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhh---cCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHH
Q psy13695 30 VGIEQERYEKFKS---EGSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQK 106 (111)
Q Consensus 30 ~~~q~~klek~k~---~g~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~~~~~~~~ee~~~Ake~L~~a~~ 106 (111)
+...-..++..-. +.++-|.+++....+.+...+|..+..++..-...|..+++.+. ....++.+.++.....+.
T Consensus 77 ~~~~~~~ie~~l~~ae~~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~--~nr~~v~~l~~~y~~~rk 154 (569)
T PRK04778 77 VTNSLPDIEEQLFEAEELNDKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEE--KNREEVEQLKDLYRELRK 154 (569)
T ss_pred HHhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 3334445555443 34788999999999999999999999999999999999997632 233556666665555544
Q ss_pred H
Q psy13695 107 E 107 (111)
Q Consensus 107 ~ 107 (111)
.
T Consensus 155 ~ 155 (569)
T PRK04778 155 S 155 (569)
T ss_pred H
Confidence 3
No 61
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=27.46 E-value=4.1e+02 Score=23.08 Aligned_cols=46 Identities=15% Similarity=0.348 Sum_probs=32.6
Q ss_pred HHHHH-HHhhhhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHH
Q psy13695 54 LEVIQ-ESQMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDD 103 (111)
Q Consensus 54 ~~vl~-Et~~mipd~~~RL~~a~~~L~~~l~~~~~~~~~ee~~~Ake~L~~ 103 (111)
...+. +...+-|+-+.++...+.+++.+|..+ +..++..+.+-|..
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~----~~~~~~~~~~~l~~ 574 (599)
T TIGR01991 528 QAALAADGDLLSEDERAAIDAAMEALQKALQGD----DADAIKAAIEALEE 574 (599)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHH
Confidence 44443 455677999999999999999999752 44566666555544
No 62
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=27.32 E-value=2.3e+02 Score=20.67 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHh
Q psy13695 68 QRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKEI 108 (111)
Q Consensus 68 ~~RL~~a~~~L~~~l~~~~~~~~~ee~~~Ake~L~~a~~~l 108 (111)
.+.+..|+..++.++.. +.+++-...|+..|...+..|
T Consensus 103 ~~~~~~A~~~~~~li~~---yP~S~y~~~A~~~l~~l~~~l 140 (203)
T PF13525_consen 103 QTSTRKAIEEFEELIKR---YPNSEYAEEAKKRLAELRNRL 140 (203)
T ss_dssp -HHHHHHHHHHHHHHHH----TTSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH---CcCchHHHHHHHHHHHHHHHH
Confidence 67888999999999988 666777778888777666544
No 63
>cd00939 MetRS_RNA MetRS_RNA binding domain. This short RNA-binding domain is found at the C-terminus of MetRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is repeated in Drosophila MetRS. This domain consists of a helix-turn-helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=27.15 E-value=1.4e+02 Score=17.65 Aligned_cols=30 Identities=20% Similarity=0.317 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHHHHH
Q psy13695 28 KEVGIEQERYEKFKSEGSDEFKLKKQLEVI 57 (111)
Q Consensus 28 kE~~~q~~klek~k~~g~de~~iKkq~~vl 57 (111)
.++..|-.+|-++|+++++.-.|+-...+|
T Consensus 3 ~~I~~QGekVR~LKa~ka~k~~i~~eV~~L 32 (45)
T cd00939 3 KEVAEQGNKVRKLKASKADKSVWQPEVNKL 32 (45)
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 578889999999999988866655444443
No 64
>COG0268 RpsT Ribosomal protein S20 [Translation, ribosomal structure and biogenesis]
Probab=26.57 E-value=1.9e+02 Score=19.45 Aligned_cols=37 Identities=27% Similarity=0.402 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhhhC
Q psy13695 68 QRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKEIEKA 111 (111)
Q Consensus 68 ~~RL~~a~~~L~~~l~~~~~~~~~ee~~~Ake~L~~a~~~l~~~ 111 (111)
..+|..++......+..+ +...|.++|..+...+++|
T Consensus 25 kS~~rT~iKk~~~ai~~g-------d~~~A~~~l~~a~~~idka 61 (88)
T COG0268 25 KSALRTAIKKVEAAIEAG-------DKEAAKAALKEAQKKIDKA 61 (88)
T ss_pred HHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHHH
Confidence 345566666666655552 5577888888887777653
No 65
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=26.46 E-value=3.6e+02 Score=22.48 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=30.5
Q ss_pred cchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Q psy13695 45 SDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKSILD 83 (111)
Q Consensus 45 ~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~ 83 (111)
+-.+++++|.++.+|--.++.-+++.=-..+.+|...+.
T Consensus 7 N~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ 45 (351)
T PF07058_consen 7 NQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIR 45 (351)
T ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556899999999999999999988765555666655554
No 66
>PF10819 DUF2564: Protein of unknown function (DUF2564) ; InterPro: IPR020314 This entry contains proteins with no known function.
Probab=26.43 E-value=2e+02 Score=19.07 Aligned_cols=52 Identities=19% Similarity=0.253 Sum_probs=30.3
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhhc---cCCCChHHHHHHHHHHHHHHHHhhh
Q psy13695 59 ESQMMIPECQRRMVRAYEELKSILDSE---QDLKDTEDYTIALQILDDAQKEIEK 110 (111)
Q Consensus 59 Et~~mipd~~~RL~~a~~~L~~~l~~~---~~~~~~ee~~~Ake~L~~a~~~l~~ 110 (111)
=|..|=|+...-=..|+++=++.|... ...-+.+=+......|..+.-+|+-
T Consensus 22 AT~smdp~~Le~A~qAve~Ar~ql~~a~~~at~lD~~Fl~~~~~~L~~~eHQL~E 76 (79)
T PF10819_consen 22 ATMSMDPDQLEHATQAVEDAREQLSQAKSHATGLDEPFLQQSEQLLDDCEHQLDE 76 (79)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHH
Confidence 344555666555555565555555431 1223446777777788877777654
No 67
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=26.35 E-value=2.6e+02 Score=26.40 Aligned_cols=52 Identities=10% Similarity=0.055 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcchHHHHHHHHHHHHHhhhhH
Q psy13695 14 GVLKRIAKEKTTYIKEVGIEQERYEKFKS-EGSDEFKLKKQLEVIQESQMMIP 65 (111)
Q Consensus 14 g~vkRL~KE~~~Y~kE~~~q~~klek~k~-~g~de~~iKkq~~vl~Et~~mip 65 (111)
.-+.||-|+...+++|+...+.++.+..- ..+.+.-+.+..+-+++.+..+-
T Consensus 842 ~e~~rLekel~kl~Kel~kl~~~L~n~~f~~kap~~~veka~~kl~~~~~~l~ 894 (1052)
T PRK14900 842 AETARVDKEIGKVDQDLAVLERKLQNPSFVQNAPPAVVEKDRARAEELREKRG 894 (1052)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcCchhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 44789999999999999999999888665 33444455555555555544443
No 68
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=25.78 E-value=5.1e+02 Score=23.59 Aligned_cols=93 Identities=18% Similarity=0.158 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---c----------chHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy13695 14 GVLKRIAKEKTTYIKEVGIEQERYEKFKSEG---S----------DEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKS 80 (111)
Q Consensus 14 g~vkRL~KE~~~Y~kE~~~q~~klek~k~~g---~----------de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~ 80 (111)
.-+.+|+.++.-.++++++....+++..++- . ....-+...+..+|...++-.+++.....+.+|++
T Consensus 516 ~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~lk~ 595 (782)
T PRK00409 516 EKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQ 595 (782)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666555555555544321 1 11122233455667777888888777777777776
Q ss_pred HHhhccCCCChHHHHHHHHHHHHHHH
Q psy13695 81 ILDSEQDLKDTEDYTIALQILDDAQK 106 (111)
Q Consensus 81 ~l~~~~~~~~~ee~~~Ake~L~~a~~ 106 (111)
.-..........+..+++..|..+..
T Consensus 596 ~~~~~~~~~~~~~~~~~~~~l~~~~~ 621 (782)
T PRK00409 596 LQKGGYASVKAHELIEARKRLNKANE 621 (782)
T ss_pred hhhcccchhhHHHHHHHHHHHHHhhh
Confidence 42211112344666667766665543
No 69
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=25.36 E-value=2e+02 Score=18.62 Aligned_cols=58 Identities=12% Similarity=0.294 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhh
Q psy13695 24 TTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKSILDS 84 (111)
Q Consensus 24 ~~Y~kE~~~q~~klek~k~~g~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~ 84 (111)
.+|+.=+...+.=|.+|.+.. -.|-.....+++--..+-.|+.+|..|=.++..++..
T Consensus 6 ~sfEeal~~Le~IV~~LE~gd---l~Leesl~lyeeG~~L~k~C~~~L~~ae~kv~~l~~~ 63 (76)
T PRK14068 6 QSFEEMMQELEQIVQKLDNET---VSLEESLDLYQRGMKLSAACDTTLKNAEKKVNDLIKE 63 (76)
T ss_pred cCHHHHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466666666666666666543 3577888889999999999999999999999999876
No 70
>KOG3312|consensus
Probab=24.84 E-value=1.5e+02 Score=22.33 Aligned_cols=39 Identities=21% Similarity=0.268 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcchHH------HHHHHHHHHHHhh
Q psy13695 24 TTYIKEVGIEQERYEKFKSEGSDEFK------LKKQLEVIQESQM 62 (111)
Q Consensus 24 ~~Y~kE~~~q~~klek~k~~g~de~~------iKkq~~vl~Et~~ 62 (111)
..-+-|++.+..+++++|.+..|..+ |..+++-|.++-+
T Consensus 37 k~LKa~vdK~sKKLE~~K~~~~~s~~k~~kkKieR~Ee~LK~~nR 81 (186)
T KOG3312|consen 37 KRLKAEVDKQSKKLEKKKEENGDSNDKSKKKKIERVEEKLKNNNR 81 (186)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcccc
Confidence 34467899999999999987655533 3334444555443
No 71
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=24.01 E-value=5.2e+02 Score=23.06 Aligned_cols=95 Identities=18% Similarity=0.262 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhh-c------
Q psy13695 14 GVLKRIAKEKTTYIKEVGIEQERYEKFKSE-GSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKSILDS-E------ 85 (111)
Q Consensus 14 g~vkRL~KE~~~Y~kE~~~q~~klek~k~~-g~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~-~------ 85 (111)
..+.-+---..+|+..++....-|.-+... ....-.|-+-.+..++.++=+-.-...+..++..|+.-|+. .
T Consensus 104 ~~i~~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n~~~~Ge~~~~lEk~Le~i~~~l~qf 183 (570)
T COG4477 104 HEIDDIEQQLTLIEEDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDVLANRHQYGEAAPELEKKLENIEEELSQF 183 (570)
T ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 344444455667777777777777666643 34455666667777777666655555555555555555542 1
Q ss_pred cCCCChHHHHHHHHHHHHHHHHh
Q psy13695 86 QDLKDTEDYTIALQILDDAQKEI 108 (111)
Q Consensus 86 ~~~~~~ee~~~Ake~L~~a~~~l 108 (111)
..+.++-.|.+|.++|..+...+
T Consensus 184 ~~lt~~Gd~ieA~evl~~~ee~~ 206 (570)
T COG4477 184 VELTSSGDYIEAREVLEEAEEHM 206 (570)
T ss_pred HHhccCCChhHHHHHHHHHHHHH
Confidence 22456677899999998887654
No 72
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.94 E-value=4.1e+02 Score=24.92 Aligned_cols=64 Identities=20% Similarity=0.202 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCcchHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy13695 9 LKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFK-SEGSDEFKLKKQLEVIQESQMMIPECQRRMV 72 (111)
Q Consensus 9 LkIktg~vkRL~KE~~~Y~kE~~~q~~klek~k-~~g~de~~iKkq~~vl~Et~~mipd~~~RL~ 72 (111)
+-....-..||-|+..-+++|++.-+.++.+-. -..+.+..|.+....+.+.+.-+-....+|.
T Consensus 809 ~id~~~e~~rl~k~~~k~~~e~~~~~~kl~ne~f~~kAp~~vv~~e~~~~~~~~~~~~~l~~~l~ 873 (877)
T COG0525 809 LIDLAAELARLEKELEKLEKEIDRIEKKLSNEGFVAKAPEEVVEKEKEKLAEYQVKLAKLEERLA 873 (877)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHhhcchhhhhcCCHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 345566788999999999999988888776544 1236777888888877777666655555543
No 73
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=23.57 E-value=2e+02 Score=23.69 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=31.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13695 7 KTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFK 41 (111)
Q Consensus 7 rqLkIktg~vkRL~KE~~~Y~kE~~~q~~klek~k 41 (111)
|.|.=|+-++..|.+|+..++.|.++....++.+.
T Consensus 2 rKL~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLq 36 (319)
T PF09789_consen 2 RKLQSKSEALLILSQELEKCQSERDQYKLMAEQLQ 36 (319)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999999999999999888777766
No 74
>PRK00571 atpC F0F1 ATP synthase subunit epsilon; Validated
Probab=23.09 E-value=2.7e+02 Score=19.33 Aligned_cols=38 Identities=26% Similarity=0.283 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhh
Q psy13695 69 RRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKEIE 109 (111)
Q Consensus 69 ~RL~~a~~~L~~~l~~~~~~~~~ee~~~Ake~L~~a~~~l~ 109 (111)
.+.+.+++..+..|.. ..+..++..|+..|..+...+.
T Consensus 92 ~~a~~~~~~ae~~l~~---~~~~~~~~~a~~~l~~a~~rl~ 129 (135)
T PRK00571 92 ARAEEAKERAEEALEN---KHDDVDYARAQAALARAIARLR 129 (135)
T ss_pred HHHHHHHHHHHHHHhh---CCChHHHHHHHHHHHHHHHHHH
Confidence 4566666666666655 3455678888888887776654
No 75
>PLN02381 valyl-tRNA synthetase
Probab=23.07 E-value=2.9e+02 Score=26.21 Aligned_cols=58 Identities=5% Similarity=-0.004 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcchHHHHHHHHHHHHHhhhhHHHHHH
Q psy13695 13 TGVLKRIAKEKTTYIKEVGIEQERYEKFKS-EGSDEFKLKKQLEVIQESQMMIPECQRR 70 (111)
Q Consensus 13 tg~vkRL~KE~~~Y~kE~~~q~~klek~k~-~g~de~~iKkq~~vl~Et~~mipd~~~R 70 (111)
..-+.||.|+....++|+...+.++.+-.- +.+.+..+.+..+-+.+.+..+-.....
T Consensus 996 ~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~~vve~e~~kl~~~~~~l~~l~~~ 1054 (1066)
T PLN02381 996 EAELEKLRNKMDEIQKQQEKLEKKMNASGYKEKVPANIQEEDARKLTKLLQELEFFEKE 1054 (1066)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344788999999998888887777665331 2356678888888888777766544443
No 76
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=22.10 E-value=3.1e+02 Score=19.79 Aligned_cols=43 Identities=21% Similarity=0.373 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHH
Q psy13695 18 RIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQES 60 (111)
Q Consensus 18 RL~KE~~~Y~kE~~~q~~klek~k~~g~de~~iKkq~~vl~Et 60 (111)
-+.-++..|..++.+....|..|+....|.=+|+.+.+-|+..
T Consensus 24 ~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~ 66 (155)
T PF06810_consen 24 KVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAK 66 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 3466889999999999999999999877888888887777644
No 77
>PF14048 MBD_C: C-terminal domain of methyl-CpG binding protein 2 and 3; PDB: 2L2L_B.
Probab=21.55 E-value=1.5e+02 Score=20.05 Aligned_cols=20 Identities=15% Similarity=0.401 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy13695 48 FKLKKQLEVIQESQMMIPECQRRMVRA 74 (111)
Q Consensus 48 ~~iKkq~~vl~Et~~mipd~~~RL~~a 74 (111)
-||++|++-+. ++++||+.|
T Consensus 76 eDIr~QE~rVk-------~aR~RLaeA 95 (96)
T PF14048_consen 76 EDIRRQERRVK-------KARKRLAEA 95 (96)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHH-------HHHHHHHHH
Confidence 47788776553 455666655
No 78
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=21.33 E-value=3.5e+02 Score=20.10 Aligned_cols=39 Identities=18% Similarity=0.229 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcch
Q psy13695 9 LKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDE 47 (111)
Q Consensus 9 LkIktg~vkRL~KE~~~Y~kE~~~q~~klek~k~~g~de 47 (111)
...+...+.+|.++....+.++...+.+++..+..-.+.
T Consensus 64 ~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~ 102 (188)
T PF03962_consen 64 KQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES 102 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 445667788999999999999999999999997654444
No 79
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=21.13 E-value=4.1e+02 Score=20.76 Aligned_cols=19 Identities=32% Similarity=0.594 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q psy13695 91 TEDYTIALQILDDAQKEIE 109 (111)
Q Consensus 91 ~ee~~~Ake~L~~a~~~l~ 109 (111)
+.+|..|-+++.+.+..++
T Consensus 140 ~~dy~~Al~li~~~~~~l~ 158 (291)
T PF10475_consen 140 EGDYPGALDLIEECQQLLE 158 (291)
T ss_pred cCCHHHHHHHHHHHHHHHH
Confidence 3677888888877776654
No 80
>PF06031 SERTA: SERTA motif; InterPro: IPR009263 This entry represents a novel motif designated as SERTA (for SEI-1, RBT1, and TARA), corresponding to the largest conserved region among TRIP-Br proteins []. The function of this motif is uncertain, but the CDK4-interacting segment of p34SEI-1 (amino acid residues 44-161) includes most of the SERTA motif [].
Probab=20.61 E-value=1e+02 Score=17.65 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=18.2
Q ss_pred CCcccchhHHHHHHHHHHHHHH
Q psy13695 2 ADPRIKTLKIKTGVLKRIAKEK 23 (111)
Q Consensus 2 ~dp~~rqLkIktg~vkRL~KE~ 23 (111)
++|.++-...-.++++||..|.
T Consensus 16 ~Ep~LrRsVLI~Ntlr~iq~E~ 37 (38)
T PF06031_consen 16 PEPSLRRSVLINNTLRRIQEEI 37 (38)
T ss_pred CCCcceehhhhhhhHHHHHHHh
Confidence 5688888888899999998764
Done!