Query psy13695
Match_columns 111
No_of_seqs 102 out of 237
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 18:07:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13695.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13695hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h7c_A Tubulin-specific chaper 100.0 3.7E-42 1.3E-46 238.1 11.8 107 1-107 1-107 (108)
2 3mxz_A Tubulin-specific chaper 100.0 7.1E-39 2.4E-43 224.2 12.8 108 3-110 4-113 (116)
3 1qsd_A Protein (beta-tubulin b 100.0 1.1E-38 3.9E-43 220.1 12.4 103 1-109 1-104 (106)
4 4e81_A Chaperone protein DNAK; 90.2 3.9 0.00013 30.0 10.2 83 15-104 123-206 (219)
5 4b9q_A Chaperone protein DNAK; 82.7 14 0.00049 30.5 10.7 83 15-104 511-594 (605)
6 1u00_A HSC66, chaperone protei 79.9 15 0.00052 26.7 10.4 84 15-104 120-203 (227)
7 2kho_A Heat shock protein 70; 73.6 18 0.0006 30.0 8.6 83 15-104 511-594 (605)
8 3d2f_A Heat shock protein homo 71.8 21 0.0007 30.2 8.7 88 15-105 528-617 (675)
9 2p32_A Heat shock 70 kDa prote 66.6 24 0.00082 23.0 7.0 44 62-106 42-85 (120)
10 3kb9_A EPI-isozizaene synthase 64.5 34 0.0011 26.6 8.1 75 3-83 243-320 (382)
11 1ps1_A Pentalenene synthase; a 58.1 44 0.0015 24.8 7.5 72 3-82 201-277 (337)
12 3n27_A Fusion glycoprotein F0, 55.9 14 0.00049 23.6 3.7 58 53-110 11-71 (80)
13 3uun_A Dystrophin; triple heli 55.1 34 0.0012 21.0 8.1 33 12-44 34-66 (119)
14 3lof_A Heat shock 70 kDa prote 54.3 40 0.0014 21.5 7.3 43 62-105 33-75 (113)
15 3he4_B Synzip5; heterodimeric 53.9 20 0.00069 20.1 3.7 24 19-42 4-27 (46)
16 3v1v_A 2-MIB synthase, 2-methy 52.7 38 0.0013 27.2 6.6 72 3-80 320-395 (433)
17 2p4v_A Transcription elongatio 49.6 55 0.0019 22.6 6.3 44 63-106 6-60 (158)
18 3nmd_A CGMP dependent protein 48.0 44 0.0015 20.8 5.0 35 8-42 34-68 (72)
19 3r6n_A Desmoplakin; spectrin r 46.9 1.1E+02 0.0039 24.6 9.5 31 14-44 35-65 (450)
20 1cxz_B Protein (PKN); protein- 46.4 32 0.0011 22.1 4.3 19 62-80 63-81 (86)
21 3r8n_T 30S ribosomal protein S 42.0 43 0.0015 21.3 4.4 37 67-110 22-58 (85)
22 2vqe_T 30S ribosomal protein S 35.5 57 0.0019 21.7 4.3 37 67-110 29-65 (106)
23 1urf_A Protein kinase C-like 1 34.8 30 0.001 22.1 2.7 29 54-82 42-70 (81)
24 1deq_A Fibrinogen (alpha chain 34.7 1.8E+02 0.0062 23.5 9.6 74 6-80 69-148 (390)
25 1w6s_B Methanol dehydrogenase 33.3 29 0.00099 21.7 2.4 35 18-52 36-70 (74)
26 2nps_D Syntaxin-6; vesicle fus 31.8 90 0.0031 19.1 5.5 55 30-84 21-76 (82)
27 1grj_A GREA protein; transcrip 31.7 1.1E+02 0.0038 20.9 5.6 40 63-102 6-56 (158)
28 1lrw_B Methanol dehydrogenase 31.6 32 0.0011 21.9 2.4 35 18-52 36-70 (83)
29 2p32_A Heat shock 70 kDa prote 31.5 1.1E+02 0.0036 19.8 5.8 49 60-108 12-62 (120)
30 2k48_A Nucleoprotein; viral pr 29.2 1.3E+02 0.0044 20.1 6.5 44 10-53 31-75 (107)
31 4dk0_A Putative MACA; alpha-ha 28.1 1.8E+02 0.0061 21.6 6.6 19 89-107 112-130 (369)
32 2lw1_A ABC transporter ATP-bin 27.1 1.1E+02 0.0039 18.8 5.8 46 64-109 27-73 (89)
33 1u4q_A Spectrin alpha chain, b 26.6 1.8E+02 0.0061 20.9 9.8 29 14-42 36-64 (322)
34 2ic6_A Nucleocapsid protein; h 26.6 1.2E+02 0.0042 19.0 5.8 40 14-53 5-45 (78)
35 2l2l_B Methyl-CPG-binding doma 25.8 87 0.003 17.0 3.6 22 47-75 9-30 (36)
36 3fb2_A Spectrin alpha chain, b 25.8 1.6E+02 0.0056 20.2 8.5 61 14-74 46-118 (218)
37 4ani_A Protein GRPE; chaperone 25.0 2E+02 0.007 21.0 11.2 83 16-99 61-143 (213)
38 2rq6_A ATP synthase epsilon ch 24.8 84 0.0029 21.2 3.8 42 69-110 90-131 (138)
39 1di1_A Aristolochene synthase; 24.4 1E+02 0.0035 22.3 4.5 68 6-79 190-268 (300)
40 1wj7_A Hypothetical protein (R 24.0 1.3E+02 0.0045 19.8 4.5 47 33-79 23-76 (104)
41 2r0j_A Ubiquitin carrier prote 22.9 30 0.001 23.5 1.2 14 71-84 99-112 (149)
42 4dac_A Computationally designe 21.6 73 0.0025 16.0 2.2 17 14-30 8-24 (28)
43 1s35_A Beta-I spectrin, spectr 21.0 2E+02 0.0068 19.4 9.3 49 13-61 32-89 (214)
44 1aqt_A ATP synthase; hydrolase 20.7 2E+02 0.0067 19.2 5.1 38 70-110 93-130 (138)
45 2wuj_A Septum site-determining 20.3 1.1E+02 0.0038 17.6 3.2 27 16-42 29-55 (57)
46 2ad6_B Methanol dehydrogenase 20.2 60 0.002 20.0 2.0 32 19-50 37-68 (69)
No 1
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=100.00 E-value=3.7e-42 Score=238.13 Aligned_cols=107 Identities=47% Similarity=0.833 Sum_probs=101.2
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy13695 1 MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKS 80 (111)
Q Consensus 1 M~dp~~rqLkIktg~vkRL~KE~~~Y~kE~~~q~~klek~k~~g~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~ 80 (111)
|+||++|||+||||+|+||+||+.||++|+.++++||++|+++|+|+|+||+|.+||+||++|||||++||.+|+.+|+.
T Consensus 1 M~d~~l~qLkIkt~~vkRL~KE~~~Y~kE~~~q~~riek~k~e~~Dey~iKkq~evl~Et~~mipd~~~Rl~~a~~~L~~ 80 (108)
T 1h7c_A 1 MADPRVRQIKIKTGVVRRLVKERVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQESRMMIPDCQRRLEAAYLDLQR 80 (108)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred CCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCChHHHHHHHHHHHHHHHH
Q psy13695 81 ILDSEQDLKDTEDYTIALQILDDAQKE 107 (111)
Q Consensus 81 ~l~~~~~~~~~ee~~~Ake~L~~a~~~ 107 (111)
||.++++++++++|.+|+++|+.|+..
T Consensus 81 ~l~~e~~~~~~ee~~~Ake~l~~a~~~ 107 (108)
T 1h7c_A 81 ILENEKDLEEAEEYKEARLVLDSVKLE 107 (108)
T ss_dssp HHHHCGGGTTSHHHHHHHHHHHHHHC-
T ss_pred HHHhcccCCCcHHHHHHHHHHHHHHhc
Confidence 999888899999999999999999864
No 2
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=7.1e-39 Score=224.18 Aligned_cols=108 Identities=39% Similarity=0.571 Sum_probs=100.2
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy13695 3 DPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKSIL 82 (111)
Q Consensus 3 dp~~rqLkIktg~vkRL~KE~~~Y~kE~~~q~~klek~k~~g~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l 82 (111)
+|++|||+||||+|+||+||+.||++|+.+|.+|+++|+++|+|+|+||+|.+||+||++|||||++||.+|+.+|+.||
T Consensus 4 ~~~lrqLkIktg~vkRL~KE~~~Y~kE~~~q~~kiekmk~e~~dey~iKkq~evL~Et~~mipd~~~RL~~a~~~L~~~l 83 (116)
T 3mxz_A 4 MATIRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRMMIPDCHKRLESALADLKSTL 83 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hh--ccCCCChHHHHHHHHHHHHHHHHhhh
Q psy13695 83 DS--EQDLKDTEDYTIALQILDDAQKEIEK 110 (111)
Q Consensus 83 ~~--~~~~~~~ee~~~Ake~L~~a~~~l~~ 110 (111)
.+ +.++.++++|.+|+++|++|+..+++
T Consensus 84 ~~~~~~~~~~~ee~~~Ak~~l~~ae~~~~~ 113 (116)
T 3mxz_A 84 AELEETDEKEGPEIEDAKKTVADVEKQFPT 113 (116)
T ss_dssp HHHHTC-CCCCHHHHHHHHHHHHHHTC---
T ss_pred HHhcccCCCChHHHHHHHHHHHHHHHhccC
Confidence 85 56789999999999999999887653
No 3
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=100.00 E-value=1.1e-38 Score=220.09 Aligned_cols=103 Identities=32% Similarity=0.490 Sum_probs=96.9
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-chHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q psy13695 1 MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGS-DEFKLKKQLEVIQESQMMIPECQRRMVRAYEELK 79 (111)
Q Consensus 1 M~dp~~rqLkIktg~vkRL~KE~~~Y~kE~~~q~~klek~k~~g~-de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~ 79 (111)
|| | |||+||||+|+||+||+.||++|+.++++||++|+++|+ |+|+||+|.+||+||++|||||.+||.+|+.+|+
T Consensus 1 ma-~--rqLkIktg~vkRL~KE~~~Y~kE~~~q~~riek~k~~~~~dey~iKkq~evl~Et~~mipd~~~Rl~~a~~~L~ 77 (106)
T 1qsd_A 1 MA-P--TQLDIKVKALKRLTKEEGYYQQELKDQEAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLPTLYEKIREFKEDLE 77 (106)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-c--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 77 7 999999999999999999999999999999999999987 9999999999999999999999999999999999
Q ss_pred HHHhhccCCCChHHHHHHHHHHHHHHHHhh
Q psy13695 80 SILDSEQDLKDTEDYTIALQILDDAQKEIE 109 (111)
Q Consensus 80 ~~l~~~~~~~~~ee~~~Ake~L~~a~~~l~ 109 (111)
.||. +++++++|.+|+++|+.|+.++.
T Consensus 78 ~~l~---~~~~~ee~~~Ake~l~~a~~~~~ 104 (106)
T 1qsd_A 78 QFLK---TYQGTEDVSDARSAITSAQELLD 104 (106)
T ss_dssp HHHH---TCCSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHH---hccCcHHHHHHHHHHHHHHHhhc
Confidence 9994 57889999999999999998875
No 4
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=90.18 E-value=3.9 Score=30.03 Aligned_cols=83 Identities=11% Similarity=0.131 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHhhccCCCChHH
Q psy13695 15 VLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQ-MMIPECQRRMVRAYEELKSILDSEQDLKDTED 93 (111)
Q Consensus 15 ~vkRL~KE~~~Y~kE~~~q~~klek~k~~g~de~~iKkq~~vl~Et~-~mipd~~~RL~~a~~~L~~~l~~~~~~~~~ee 93 (111)
-+.|++++...|..|=.....+++....-..-.|.++ ..|.+.. .+-++-+.+|..++.+++++|..+ +.++
T Consensus 123 eI~~m~~~a~~~~~eD~~~r~~~e~kn~le~~i~~~~---~~l~~~~~~l~~~~k~~i~~~l~~~~~~L~~~----~~~~ 195 (219)
T 4e81_A 123 EIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTR---KQVEEAGDKLPADDKTAIESALTALETALKGE----DKAA 195 (219)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHGGGSCHHHHHHHHHHHHHHHHHHHSS----CHHH
T ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhCCHHHHHHHHHHHHHHHHHHhcC----CHHH
Confidence 3678888888887666666666555433223334444 3444444 344778889999999999999873 5678
Q ss_pred HHHHHHHHHHH
Q psy13695 94 YTIALQILDDA 104 (111)
Q Consensus 94 ~~~Ake~L~~a 104 (111)
|..+.+-|+.+
T Consensus 196 i~~~~~~L~~~ 206 (219)
T 4e81_A 196 IEAKMQELAQV 206 (219)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888777654
No 5
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=82.71 E-value=14 Score=30.54 Aligned_cols=83 Identities=11% Similarity=0.135 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHhhccCCCChHH
Q psy13695 15 VLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQ-MMIPECQRRMVRAYEELKSILDSEQDLKDTED 93 (111)
Q Consensus 15 ~vkRL~KE~~~Y~kE~~~q~~klek~k~~g~de~~iKkq~~vl~Et~-~mipd~~~RL~~a~~~L~~~l~~~~~~~~~ee 93 (111)
-+.|++++...|..|=....++++....-..-.|.++ ..|++-. .+-++-+.++..++.+++++|..+ +.++
T Consensus 511 ei~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~ 583 (605)
T 4b9q_A 511 EIQKMVRDAEANAEADRKCEELVQTRNQGDHLLHSTR---KQVEEAGDKLPADDKTAIESALTALETALKGE----DKAA 583 (605)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHGGGSCHHHHHHHHHHHHHHHHHHHSS----CHHH
T ss_pred HHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhCCHHHHHHHHHHHHHHHHHHhcC----CHHH
Confidence 4688888888887776666666555433223334444 4444433 344788889999999999999863 4678
Q ss_pred HHHHHHHHHHH
Q psy13695 94 YTIALQILDDA 104 (111)
Q Consensus 94 ~~~Ake~L~~a 104 (111)
+..+.+-|+.+
T Consensus 584 ~~~~~~~l~~~ 594 (605)
T 4b9q_A 584 IEAKMQELAQV 594 (605)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888877654
No 6
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=79.87 E-value=15 Score=26.73 Aligned_cols=84 Identities=12% Similarity=0.141 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCCCChHHH
Q psy13695 15 VLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKSILDSEQDLKDTEDY 94 (111)
Q Consensus 15 ~vkRL~KE~~~Y~kE~~~q~~klek~k~~g~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~~~~~~~~ee~ 94 (111)
-+.|++++...|..+=....++++...+-..-.|.++....- ....+-++-+..+..++.+++++|..+ +.++|
T Consensus 120 ei~~~~~~~~~~~~~D~~~~e~~e~kn~le~~i~~~~~~l~~--~~~~~~~~~k~~i~~~l~~~~~wl~~~----d~~~~ 193 (227)
T 1u00_A 120 EIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAA--DAALLSAAERQVIDDAAAHLSEVAQGD----DVDAI 193 (227)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HGGGSCHHHHHHHHHHHHHHHHHTTSS----CHHHH
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHh--hhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHH
Confidence 477788888877776655555555443322334455443322 223455788899999999999999742 46778
Q ss_pred HHHHHHHHHH
Q psy13695 95 TIALQILDDA 104 (111)
Q Consensus 95 ~~Ake~L~~a 104 (111)
..+.+-|..+
T Consensus 194 ~~~~~~L~~~ 203 (227)
T 1u00_A 194 EQAIKNVDKQ 203 (227)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777777654
No 7
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=73.60 E-value=18 Score=29.99 Aligned_cols=83 Identities=11% Similarity=0.134 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHhhccCCCChHH
Q psy13695 15 VLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQES-QMMIPECQRRMVRAYEELKSILDSEQDLKDTED 93 (111)
Q Consensus 15 ~vkRL~KE~~~Y~kE~~~q~~klek~k~~g~de~~iKkq~~vl~Et-~~mipd~~~RL~~a~~~L~~~l~~~~~~~~~ee 93 (111)
-+.|++++...|..+=....++++....-..-.|.++. .|++- ..+-++-+..+..++.+++++|.. .+.++
T Consensus 511 ~i~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~---~l~~~~~~~~~~~~~~i~~~~~~~~~~l~~----~~~~~ 583 (605)
T 2kho_A 511 EIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRK---QVEEAGDKLPADDKTAIESALTALETALKG----EDKAA 583 (605)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHGGGSCHHHHHHHHHHHHHHHHHTTS----SCHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhccCCHHHHHHHHHHHHHHHHHHhc----CCHHH
Confidence 46778888877766544444444443322223344443 34442 245577888999999999999974 26688
Q ss_pred HHHHHHHHHHH
Q psy13695 94 YTIALQILDDA 104 (111)
Q Consensus 94 ~~~Ake~L~~a 104 (111)
|..+.+-|+.+
T Consensus 584 ~~~~~~~l~~~ 594 (605)
T 2kho_A 584 IEAKMQELAQV 594 (605)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
Confidence 88888877643
No 8
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=71.75 E-value=21 Score=30.22 Aligned_cols=88 Identities=9% Similarity=0.104 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHhhccCCCChH
Q psy13695 15 VLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQE--SQMMIPECQRRMVRAYEELKSILDSEQDLKDTE 92 (111)
Q Consensus 15 ~vkRL~KE~~~Y~kE~~~q~~klek~k~~g~de~~iKkq~~vl~E--t~~mipd~~~RL~~a~~~L~~~l~~~~~~~~~e 92 (111)
-+.|++++...|..+=....++.+....-..-.|.++.. |.+ ...+-++-+..|..++.+++++|.++......+
T Consensus 528 ei~~~~~~~~~~~~~D~~~~~~~~~~n~le~~i~~~~~~---l~~~~~~~~~~~~~~~~~~~l~~~~~wl~~~~~~~~~~ 604 (675)
T 3d2f_A 528 KLNELIEKENEMLAQDKLVAETEDRKNTLEEYIYTLRGK---LEEEYAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIKA 604 (675)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTTTTGGGSCHHHHHHHHHHHHHHHHHTTTGGGGCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhCCHHHHHHHHHHHHHHHHHHhcCCchhhHH
Confidence 477888887777665544444443332222233444443 322 224567778899999999999997643345678
Q ss_pred HHHHHHHHHHHHH
Q psy13695 93 DYTIALQILDDAQ 105 (111)
Q Consensus 93 e~~~Ake~L~~a~ 105 (111)
+|..+.+-|+..-
T Consensus 605 ~~~~~~~~l~~~~ 617 (675)
T 3d2f_A 605 KYIAKYEELASLG 617 (675)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888776543
No 9
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=66.58 E-value=24 Score=23.02 Aligned_cols=44 Identities=18% Similarity=0.333 Sum_probs=34.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHH
Q psy13695 62 MMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQK 106 (111)
Q Consensus 62 ~mipd~~~RL~~a~~~L~~~l~~~~~~~~~ee~~~Ake~L~~a~~ 106 (111)
.+-++-+.+|..++.+|+.+|.. .+..+.++|..+.+.|..+-.
T Consensus 42 kl~~eek~~I~~~i~el~~~L~~-~~~ad~e~ik~k~~eL~~~~~ 85 (120)
T 2p32_A 42 KISPEDKKKIEDKCDEILKWLDS-NQTAEKEEFEHQQKDLEGLAN 85 (120)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHc-CCcCCHHHHHHHHHHHHHHHH
Confidence 46677889999999999999975 334567888888888876543
No 10
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=64.52 E-value=34 Score=26.57 Aligned_cols=75 Identities=12% Similarity=0.131 Sum_probs=49.0
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-HhhcCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q psy13695 3 DPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQ--ERYEK-FKSEGSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELK 79 (111)
Q Consensus 3 dp~~rqLkIktg~vkRL~KE~~~Y~kE~~~q~--~klek-~k~~g~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~ 79 (111)
+|..+.|.--++.+=||..+..||++|...-. .-|.= |+..|-. -.+.+++...||-++.+++..+...|-
T Consensus 243 ~p~~~~l~~~~~~i~rL~NDi~S~~kE~~~G~~~N~V~~~m~~~g~s------~eeA~~~v~~~i~~~~k~~~~~~~~L~ 316 (382)
T 3kb9_A 243 HPAYRRAALLSQEFAAWYNDLCSLPKEIAGDEVHNLGISLITHHSLT------LEEAIGEVRRRVEECITEFLAVERDAL 316 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHSCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHcCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35556677788889999999999999986310 00110 1111111 256778888888888888887777776
Q ss_pred HHHh
Q psy13695 80 SILD 83 (111)
Q Consensus 80 ~~l~ 83 (111)
.+..
T Consensus 317 ~~~~ 320 (382)
T 3kb9_A 317 RFAD 320 (382)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 5443
No 11
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=58.05 E-value=44 Score=24.84 Aligned_cols=72 Identities=7% Similarity=-0.006 Sum_probs=46.3
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHH-----HHHHHHHHhhhhHHHHHHHHHHHHH
Q psy13695 3 DPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKK-----QLEVIQESQMMIPECQRRMVRAYEE 77 (111)
Q Consensus 3 dp~~rqLkIktg~vkRL~KE~~~Y~kE~~~q~~klek~k~~g~de~~iKk-----q~~vl~Et~~mipd~~~RL~~a~~~ 77 (111)
+|..+.|.--++.+=||..+..||++|...-. + .+--.-+.+ ..+.+++...||-++.+++......
T Consensus 201 ~p~~~~l~~~~~~i~rL~NDl~S~~kE~~~G~--~------~n~V~~~m~~~g~s~eeA~~~v~~~i~~~~~~~~~~~~~ 272 (337)
T 1ps1_A 201 SAVMSAMLQIAVDVNLLLNDIASLEKEEARGE--Q------NNMVMILRREHGWSKSRSVSHMQNEVRARLEQYLLLESC 272 (337)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTC--C------CSHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCC--c------chHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788999999999999999984311 0 011111222 2456777777777777777777666
Q ss_pred HHHHH
Q psy13695 78 LKSIL 82 (111)
Q Consensus 78 L~~~l 82 (111)
|-.+.
T Consensus 273 lp~~~ 277 (337)
T 1ps1_A 273 LPKVG 277 (337)
T ss_dssp HHHHH
T ss_pred hhhhh
Confidence 55433
No 12
>3n27_A Fusion glycoprotein F0, linker, fusion glycoprote; fusion protein, chimera protein, fusion inhibitor, antivirus viral protein; HET: CIT; 1.80A {Hendravirus}
Probab=55.86 E-value=14 Score=23.60 Aligned_cols=58 Identities=12% Similarity=0.151 Sum_probs=35.0
Q ss_pred HHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhhh
Q psy13695 53 QLEVIQESQMMI---PECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKEIEK 110 (111)
Q Consensus 53 q~~vl~Et~~mi---pd~~~RL~~a~~~L~~~l~~~~~~~~~ee~~~Ake~L~~a~~~l~~ 110 (111)
-.+-|++|-..| -+..+.+.-|+..++++++.+....=+=++..|+.-|++.+.-+++
T Consensus 11 LK~SIq~TN~AV~eL~~a~~~t~iAIqaIQd~IN~~~~~dis~~l~~a~~~l~~sk~~~~~ 71 (80)
T 3n27_A 11 LKSSIESTNEAVVKLQETAEKTVYVLTALQDYSGGSGGIDISIELNKAKSDLEESKEWIRR 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC-----CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhhHhHHHhhHHHHHHHHHH
Confidence 334445554444 4455667778888888888744444456788888888888777665
No 13
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=55.05 E-value=34 Score=21.03 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy13695 12 KTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEG 44 (111)
Q Consensus 12 ktg~vkRL~KE~~~Y~kE~~~q~~klek~k~~g 44 (111)
-..+|+.+++.+..+..|+...+.+++.+...|
T Consensus 34 d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g 66 (119)
T 3uun_A 34 DVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLG 66 (119)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 356788999999999999999999988877643
No 14
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=54.32 E-value=40 Score=21.54 Aligned_cols=43 Identities=14% Similarity=0.288 Sum_probs=32.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHH
Q psy13695 62 MMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQ 105 (111)
Q Consensus 62 ~mipd~~~RL~~a~~~L~~~l~~~~~~~~~ee~~~Ake~L~~a~ 105 (111)
.+=++-+.+|..++.+|..+|..+ +..+.++|....+-|+.+-
T Consensus 33 kl~~eek~~i~~~i~e~~~wL~~~-~~a~~e~i~~k~~eL~~~~ 75 (113)
T 3lof_A 33 KISEADKKKVLDKCQEVISWLDAN-TLAEKDEFEHKRKELEQVC 75 (113)
T ss_dssp TBCHHHHHHHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcC-CcCCHHHHHHHHHHHHHHH
Confidence 455677889999999999999873 3456788888888776543
No 15
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=53.85 E-value=20 Score=20.08 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy13695 19 IAKEKTTYIKEVGIEQERYEKFKS 42 (111)
Q Consensus 19 L~KE~~~Y~kE~~~q~~klek~k~ 42 (111)
.+||+.-|-+|+++..+.+.+++.
T Consensus 4 tvkelknyiqeleernaelknlke 27 (46)
T 3he4_B 4 TVKELKNYIQELEERNAELKNLKE 27 (46)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHHHHhHHH
Confidence 368889999999988888777764
No 16
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=52.66 E-value=38 Score=27.21 Aligned_cols=72 Identities=15% Similarity=0.121 Sum_probs=45.5
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-HhhcCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy13695 3 DPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQ---ERYEK-FKSEGSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEEL 78 (111)
Q Consensus 3 dp~~rqLkIktg~vkRL~KE~~~Y~kE~~~q~---~klek-~k~~g~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L 78 (111)
+|.++.|.--++.+=||+.+..||++|..... .=|.- |+..|-. -++.+++...||-++.++.......|
T Consensus 320 ~p~~~~L~~~~~~i~rL~NDI~Sy~kE~~~gg~~~N~V~~~mke~g~S------~eeA~~~v~~~i~~~~~~F~~~~~~L 393 (433)
T 3v1v_A 320 RPDMQRVIALAGNATTIVNDLYSYTKELNSPGRHLNLPVVIAEREQLC------ERDAYLKAVEVHNELQHSFEAAAADL 393 (433)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHSHHHHTTSSSCCCCHHHHHHHHHTCC------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhchHHHHHHHHhcCCCCCcHHHHHHHhcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777788999999999999999976310 11111 1111111 14567777778888877776666655
Q ss_pred HH
Q psy13695 79 KS 80 (111)
Q Consensus 79 ~~ 80 (111)
..
T Consensus 394 ~~ 395 (433)
T 3v1v_A 394 AE 395 (433)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 17
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=49.58 E-value=55 Score=22.64 Aligned_cols=44 Identities=14% Similarity=0.156 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHHHHHHH--------HHhh---ccCCCChHHHHHHHHHHHHHHH
Q psy13695 63 MIPECQRRMVRAYEELKS--------ILDS---EQDLKDTEDYTIALQILDDAQK 106 (111)
Q Consensus 63 mipd~~~RL~~a~~~L~~--------~l~~---~~~~~~~ee~~~Ake~L~~a~~ 106 (111)
|-|....+|+..++.|.. .+.. ..|+.+..+|.+|++-+.....
T Consensus 6 lT~~g~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENaeY~aak~~q~~~e~ 60 (158)
T 2p4v_A 6 VTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60 (158)
T ss_dssp ECHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccchhHHHHHHHHHHHHH
Confidence 667888899999999865 2322 4788899999999988655444
No 18
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=48.02 E-value=44 Score=20.83 Aligned_cols=35 Identities=14% Similarity=0.285 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy13695 8 TLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKS 42 (111)
Q Consensus 8 qLkIktg~vkRL~KE~~~Y~kE~~~q~~klek~k~ 42 (111)
+|+-+-..++.|-+++.-+..++...+..+++|++
T Consensus 34 ELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 34 ELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45556667777777777777777777777777754
No 19
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=46.90 E-value=1.1e+02 Score=24.63 Aligned_cols=31 Identities=10% Similarity=0.118 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy13695 14 GVLKRIAKEKTTYIKEVGIEQERYEKFKSEG 44 (111)
Q Consensus 14 g~vkRL~KE~~~Y~kE~~~q~~klek~k~~g 44 (111)
.+|..|++.+...+.++.....+|+.+.+..
T Consensus 35 ~sVe~LLqKH~~lE~eI~a~~~~v~~l~~~a 65 (450)
T 3r6n_A 35 ASVEQHINSHRGIHNSIGDYRWQLDKIKADL 65 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3689999999999999999999999998754
No 20
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=46.44 E-value=32 Score=22.12 Aligned_cols=19 Identities=16% Similarity=0.349 Sum_probs=9.0
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q psy13695 62 MMIPECQRRMVRAYEELKS 80 (111)
Q Consensus 62 ~mipd~~~RL~~a~~~L~~ 80 (111)
.++-.+.++|..--.+|+.
T Consensus 63 ~eL~~sn~kl~~L~~eL~e 81 (86)
T 1cxz_B 63 LLLRGSSRRLDLLHQQLQE 81 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555544444443
No 21
>3r8n_T 30S ribosomal protein S20; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_T 3fih_T* 3j18_T* 2wwl_T 3oar_T 3oaq_T 3ofb_T 3ofa_T 3ofp_T 3ofx_T 3ofy_T 3ofo_T 3r8o_T 4a2i_T 4gd1_T 4gd2_T 2qal_T* 1p6g_T 1p87_T 2aw7_T ...
Probab=42.00 E-value=43 Score=21.32 Aligned_cols=37 Identities=11% Similarity=0.206 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhhh
Q psy13695 67 CQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKEIEK 110 (111)
Q Consensus 67 ~~~RL~~a~~~L~~~l~~~~~~~~~ee~~~Ake~L~~a~~~l~~ 110 (111)
...+|..++..+...++.+ +...|.++|..+...|++
T Consensus 22 ~kS~~rT~iKk~~~Ai~~g-------d~~~A~~~l~~a~~~iDk 58 (85)
T 3r8n_T 22 RRSMMRTFIKKVYAAIEAG-------DKAAAQKAFNEMQPIVDR 58 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHT-------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHH
Confidence 3567778888888877762 235666667666666654
No 22
>2vqe_T 30S ribosomal protein S20; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.7.6.1 PDB: 1gix_W* 1hnw_T* 1hnx_T* 1hnz_T* 1hr0_T 1j5e_T 1jgo_W* 1jgp_W* 1jgq_W* 1ml5_W* 1yl4_W 2b64_T* 2b9m_T* 2b9o_T* 2f4v_T* 2ow8_u* 2qnh_u* 2uxb_T* 1fjg_T* 2uxd_T* ...
Probab=35.46 E-value=57 Score=21.67 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhhh
Q psy13695 67 CQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKEIEK 110 (111)
Q Consensus 67 ~~~RL~~a~~~L~~~l~~~~~~~~~ee~~~Ake~L~~a~~~l~~ 110 (111)
..++|..++..+...++.+ +...|.++|..+...|++
T Consensus 29 ~kS~~rT~iKkv~~Ai~~g-------dk~~A~~~l~~a~s~iDk 65 (106)
T 2vqe_T 29 KKSAIKTLSKKAVQLAQEG-------KAEEALKIMRKAESLIDK 65 (106)
T ss_dssp HHHHHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHH
Confidence 3467777777777777762 235677777777777665
No 23
>1urf_A Protein kinase C-like 1; transferase, G-protein, HR1 domain, helical, coiled coil, ATP-binding, serine/threonine-protein kinase, phosphorylation; NMR {Homo sapiens} SCOP: a.2.6.1 PDB: 2rmk_B*
Probab=34.78 E-value=30 Score=22.14 Aligned_cols=29 Identities=14% Similarity=0.259 Sum_probs=22.1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy13695 54 LEVIQESQMMIPECQRRMVRAYEELKSIL 82 (111)
Q Consensus 54 ~~vl~Et~~mipd~~~RL~~a~~~L~~~l 82 (111)
...|.|++.|+.|+..++.----.+....
T Consensus 42 rKlLaeAQqmL~DSk~KIe~lRmqI~k~~ 70 (81)
T 1urf_A 42 RKLLLTAQQMLQDSKTKIDIIRMQLRRAL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999876554444433
No 24
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=34.68 E-value=1.8e+02 Score=23.49 Aligned_cols=74 Identities=11% Similarity=0.128 Sum_probs=46.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchH-----HHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Q psy13695 6 IKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEF-----KLKKQLEVIQESQMM-IPECQRRMVRAYEELK 79 (111)
Q Consensus 6 ~rqLkIktg~vkRL~KE~~~Y~kE~~~q~~klek~k~~g~de~-----~iKkq~~vl~Et~~m-ipd~~~RL~~a~~~L~ 79 (111)
+..|+-....++|..++-..|-+.+-+.-....+-..+..+-| +|.++...|+++-.. || --++|+.-+.++.
T Consensus 69 Ie~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~-~ir~Lq~~l~~q~ 147 (390)
T 1deq_A 69 INKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ-RINLLQKNVRDQL 147 (390)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHH
Confidence 4556666666777777777887777766655544444433222 788888888887654 44 5566666655543
Q ss_pred H
Q psy13695 80 S 80 (111)
Q Consensus 80 ~ 80 (111)
.
T Consensus 148 ~ 148 (390)
T 1deq_A 148 V 148 (390)
T ss_pred H
Confidence 3
No 25
>1w6s_B Methanol dehydrogenase subunit 2; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: a.137.2.1 PDB: 1h4j_B* 1h4i_B* 2d0v_B*
Probab=33.35 E-value=29 Score=21.68 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHH
Q psy13695 18 RIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKK 52 (111)
Q Consensus 18 RL~KE~~~Y~kE~~~q~~klek~k~~g~de~~iKk 52 (111)
-|-|...+-..--+....|++.|+..|.=.||+++
T Consensus 36 EL~KQ~~si~ame~RN~kRv~~fkkTG~~~ydV~k 70 (74)
T 1w6s_B 36 ELNKQADSIKQMEERNKKRVENFKKTGKFEYDVAK 70 (74)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHSSCCCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCceEEehhh
Confidence 34555555555556667788889988888888764
No 26
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=31.80 E-value=90 Score=19.07 Aligned_cols=55 Identities=11% Similarity=0.111 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhcC-cchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhh
Q psy13695 30 VGIEQERYEKFKSEG-SDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKSILDS 84 (111)
Q Consensus 30 ~~~q~~klek~k~~g-~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~ 84 (111)
+......|..+|.-+ .=.-.|..|...|++-..-+..+..||..+...+..++..
T Consensus 21 Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~ 76 (82)
T 2nps_D 21 LELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHM 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666533 2223688999999999999999999999999999999875
No 27
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=31.74 E-value=1.1e+02 Score=20.92 Aligned_cols=40 Identities=23% Similarity=0.305 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHHHHHHHH--------HHhh---ccCCCChHHHHHHHHHHH
Q psy13695 63 MIPECQRRMVRAYEELKS--------ILDS---EQDLKDTEDYTIALQILD 102 (111)
Q Consensus 63 mipd~~~RL~~a~~~L~~--------~l~~---~~~~~~~ee~~~Ake~L~ 102 (111)
|=|....||+..++.|.. .+.. ..|+.+..+|.+|++-..
T Consensus 6 ~T~~g~~~L~~El~~L~~~~rp~i~~~i~~A~~~gDlsENaeY~aak~~q~ 56 (158)
T 1grj_A 6 MTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQG 56 (158)
T ss_dssp EEHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhccchhhHhhHHHHHhcccccccchhhhHHHHHH
Confidence 567888899999999977 2222 467888899999996554
No 28
>1lrw_B Methanol dehydrogenase subunit 2; heavy subunits: 8-fold beta-propeller superbarrel, oxidoreductase; HET: PQQ; 2.50A {Paracoccus denitrificans} SCOP: a.137.2.1
Probab=31.60 E-value=32 Score=21.91 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHH
Q psy13695 18 RIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKK 52 (111)
Q Consensus 18 RL~KE~~~Y~kE~~~q~~klek~k~~g~de~~iKk 52 (111)
-|-|...+-..--.....|++.|+..|.=.|++++
T Consensus 36 EL~KQ~~si~ame~RN~kRv~~fkkTGkf~ydV~k 70 (83)
T 1lrw_B 36 ELSKQGESLAVMDARNEWRVWNMKKTGKFEYDVKK 70 (83)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHSSCCCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCceEEehhh
Confidence 34555555555556667788888888888888764
No 29
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=31.50 E-value=1.1e+02 Score=19.78 Aligned_cols=49 Identities=16% Similarity=0.073 Sum_probs=29.8
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHhh--ccCCCChHHHHHHHHHHHHHHHHh
Q psy13695 60 SQMMIPECQRRMVRAYEELKSILDS--EQDLKDTEDYTIALQILDDAQKEI 108 (111)
Q Consensus 60 t~~mipd~~~RL~~a~~~L~~~l~~--~~~~~~~ee~~~Ake~L~~a~~~l 108 (111)
|.+..-+++..+...+-.++..|.+ ..+.-+.++.......|..++..|
T Consensus 12 ~~re~iEarN~aEsliy~~e~~L~e~~~~dkl~~eek~~I~~~i~el~~~L 62 (120)
T 2p32_A 12 SGLVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWL 62 (120)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHTCTTTGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHHHHH
Confidence 3455566677777777777777754 233345566666666666655554
No 30
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=29.23 E-value=1.3e+02 Score=20.07 Aligned_cols=44 Identities=9% Similarity=0.147 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchHHHHHH
Q psy13695 10 KIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSE-GSDEFKLKKQ 53 (111)
Q Consensus 10 kIktg~vkRL~KE~~~Y~kE~~~q~~klek~k~~-g~de~~iKkq 53 (111)
+|-.+.++.|.+|+.--++.+....+|+..-... +.|+=++.++
T Consensus 31 ~~tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~ 75 (107)
T 2k48_A 31 PFTMSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKS 75 (107)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 4677899999999999999999999998876643 3444456554
No 31
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=28.07 E-value=1.8e+02 Score=21.58 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=8.8
Q ss_pred CChHHHHHHHHHHHHHHHH
Q psy13695 89 KDTEDYTIALQILDDAQKE 107 (111)
Q Consensus 89 ~~~ee~~~Ake~L~~a~~~ 107 (111)
-...+|..|+..+..++..
T Consensus 112 ~s~~~~~~a~~~~~~a~a~ 130 (369)
T 4dk0_A 112 TSLDTLNTAKATLNNAKAE 130 (369)
T ss_dssp SCGGGHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHH
Confidence 3344555555554444433
No 32
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=27.12 E-value=1.1e+02 Score=18.82 Aligned_cols=46 Identities=17% Similarity=0.265 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCC-CChHHHHHHHHHHHHHHHHhh
Q psy13695 64 IPECQRRMVRAYEELKSILDSEQDL-KDTEDYTIALQILDDAQKEIE 109 (111)
Q Consensus 64 ipd~~~RL~~a~~~L~~~l~~~~~~-~~~ee~~~Ake~L~~a~~~l~ 109 (111)
||.--..|...+..|+..|....-+ .+.+.+.....-+..+...|+
T Consensus 27 le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe 73 (89)
T 2lw1_A 27 LPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELE 73 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 5666667777777777777662212 344555555555555555544
No 33
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=26.61 E-value=1.8e+02 Score=20.89 Aligned_cols=29 Identities=10% Similarity=0.303 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy13695 14 GVLKRIAKEKTTYIKEVGIEQERYEKFKS 42 (111)
Q Consensus 14 g~vkRL~KE~~~Y~kE~~~q~~klek~k~ 42 (111)
.+|+.+++.+...+.++.....+|+.+..
T Consensus 36 ~~v~~ll~kh~~le~~i~~~~~~v~~l~~ 64 (322)
T 1u4q_A 36 ASVNNLLKKHQLLEADISAHEDRLKDLNS 64 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 57899999999999999988888877664
No 34
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=26.59 E-value=1.2e+02 Score=19.02 Aligned_cols=40 Identities=13% Similarity=0.134 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchHHHHHH
Q psy13695 14 GVLKRIAKEKTTYIKEVGIEQERYEKFKSE-GSDEFKLKKQ 53 (111)
Q Consensus 14 g~vkRL~KE~~~Y~kE~~~q~~klek~k~~-g~de~~iKkq 53 (111)
+.++.|.+|+.--++.+....+|+..-... +.|+=++.++
T Consensus 5 ~~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~ 45 (78)
T 2ic6_A 5 STLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKS 45 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 578999999999999999999998776543 3444456554
No 35
>2l2l_B Methyl-CPG-binding domain protein 2; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=25.82 E-value=87 Score=16.98 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy13695 47 EFKLKKQLEVIQESQMMIPECQRRMVRAY 75 (111)
Q Consensus 47 e~~iKkq~~vl~Et~~mipd~~~RL~~a~ 75 (111)
+-||++|++-+. .+++||+.|+
T Consensus 9 e~DIr~QE~rV~-------~aR~rL~eaL 30 (36)
T 2l2l_B 9 DEDIRKQEERVQ-------QVRKKLEEAL 30 (36)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHH
Confidence 458888887553 4556666665
No 36
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=25.81 E-value=1.6e+02 Score=20.16 Aligned_cols=61 Identities=8% Similarity=0.181 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------cchHHHHHHHHHHHHHhh----hhHHHHHHHHHH
Q psy13695 14 GVLKRIAKEKTTYIKEVGIEQERYEKFKSEG--------SDEFKLKKQLEVIQESQM----MIPECQRRMVRA 74 (111)
Q Consensus 14 g~vkRL~KE~~~Y~kE~~~q~~klek~k~~g--------~de~~iKkq~~vl~Et~~----mipd~~~RL~~a 74 (111)
..|+++++....++.|+.....+++.+...| .+.-.|......|.+... +...-+.+|..+
T Consensus 46 ~~ve~ll~~H~~l~~ei~~~~~~~~~~~~~G~~Ll~~~~~~~~~i~~~l~~L~~~w~~L~~~~~~R~~~L~q~ 118 (218)
T 3fb2_A 46 TGAEALLERHQEHRTEIDARAGTFQAFEQFGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRMMLDQC 118 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999998888888776543 233345555444444432 334444445443
No 37
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=25.01 E-value=2e+02 Score=21.01 Aligned_cols=83 Identities=10% Similarity=0.197 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCCCChHHHH
Q psy13695 16 LKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYT 95 (111)
Q Consensus 16 vkRL~KE~~~Y~kE~~~q~~klek~k~~g~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~~~~~~~~ee~~ 95 (111)
+..|..+....+.++.+...++-++.|+ -+.|.-+-+.++-+-....+-....-|--.+++|+..+...+...+...|.
T Consensus 61 ~~~l~~~l~~l~~e~~el~d~~lR~~AE-feN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl~~~~~~~~~~~l~ 139 (213)
T 4ani_A 61 LAAAKAQIAELEAKLSEMEHRYLRLYAD-FENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFERALKIETDNEQAKSIL 139 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCCSCCSTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccccccHHHHH
Confidence 4567777788888888888888888888 477888888888888888888888899999999999987533223333444
Q ss_pred HHHH
Q psy13695 96 IALQ 99 (111)
Q Consensus 96 ~Ake 99 (111)
..-+
T Consensus 140 eGve 143 (213)
T 4ani_A 140 QGME 143 (213)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 38
>2rq6_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, ATP synthesis, CF1, hydrogen ION transport, hydrolase; NMR {Thermosynechococcus elongatus} PDB: 2rq7_A
Probab=24.80 E-value=84 Score=21.21 Aligned_cols=42 Identities=10% Similarity=0.152 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhhh
Q psy13695 69 RRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKEIEK 110 (111)
Q Consensus 69 ~RL~~a~~~L~~~l~~~~~~~~~ee~~~Ake~L~~a~~~l~~ 110 (111)
.|.+.++..-++.|....+..+..++..|+..|..|...|..
T Consensus 90 ~~a~~a~~~Ae~~l~~~~~~~~~~~~~~a~~aL~rA~arl~~ 131 (138)
T 2rq6_A 90 EKAKAEFAAAQAALAQAEQGESKQAKIQATQAFRRARARLQA 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555554422112446778888888888776654
No 39
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=24.43 E-value=1e+02 Score=22.26 Aligned_cols=68 Identities=12% Similarity=-0.004 Sum_probs=41.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHH-HhhcCcchHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy13695 6 IKTLKIKTGVLKRIAKEKTTYIKEVGIEQE----------RYEK-FKSEGSDEFKLKKQLEVIQESQMMIPECQRRMVRA 74 (111)
Q Consensus 6 ~rqLkIktg~vkRL~KE~~~Y~kE~~~q~~----------klek-~k~~g~de~~iKkq~~vl~Et~~mipd~~~RL~~a 74 (111)
.+.|.--.+.+=||..+..||++|...... -|.= |+..|-. ..+.++....||-++.+++...
T Consensus 190 ~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~h~~~~~~~n~V~~~m~~~g~s------~eeA~~~~~~~i~~~~~~~~~~ 263 (300)
T 1di1_A 190 MKALEANCAKQLSVVNDIYSYDKEEEASRTGHKEGAFLCSAVKVLAEESKLG------IPATKRVLWSMTREWETVHDEI 263 (300)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTTCCC----------CCCHHHHHHHHHTCC------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhhccccccccccchhHHHHHHHcCCC------HHHHHHHHHHHHHHHHHHHHHH
Confidence 345666788899999999999999764331 1111 1111211 2456777777777777777666
Q ss_pred HHHHH
Q psy13695 75 YEELK 79 (111)
Q Consensus 75 ~~~L~ 79 (111)
..+|.
T Consensus 264 ~~~l~ 268 (300)
T 1di1_A 264 VAEKI 268 (300)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 65444
No 40
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=24.04 E-value=1.3e+02 Score=19.83 Aligned_cols=47 Identities=26% Similarity=0.400 Sum_probs=32.4
Q ss_pred HHHHHHHHhhcCcch---HHHHHHHHH----HHHHhhhhHHHHHHHHHHHHHHH
Q psy13695 33 EQERYEKFKSEGSDE---FKLKKQLEV----IQESQMMIPECQRRMVRAYEELK 79 (111)
Q Consensus 33 q~~klek~k~~g~de---~~iKkq~~v----l~Et~~mipd~~~RL~~a~~~L~ 79 (111)
.+-||.+|..++.+. -+|++-.++ -++....|.+|.-=|..|+..|-
T Consensus 23 eQ~rLAq~i~~~~d~d~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Ll 76 (104)
T 1wj7_A 23 EQIRLAQMISDHNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLL 76 (104)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 456778887766553 266666666 67777778888777777777664
No 41
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=22.88 E-value=30 Score=23.47 Aligned_cols=14 Identities=14% Similarity=0.304 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHhh
Q psy13695 71 MVRAYEELKSILDS 84 (111)
Q Consensus 71 L~~a~~~L~~~l~~ 84 (111)
|...+..|..+|.+
T Consensus 99 i~~vl~~i~~ll~~ 112 (149)
T 2r0j_A 99 IRTVLLSIQALLSS 112 (149)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhC
Confidence 44455555666654
No 42
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=21.60 E-value=73 Score=16.02 Aligned_cols=17 Identities=35% Similarity=0.356 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy13695 14 GVLKRIAKEKTTYIKEV 30 (111)
Q Consensus 14 g~vkRL~KE~~~Y~kE~ 30 (111)
..|+||-||..-.+-|+
T Consensus 8 anvkrlekevgklegev 24 (28)
T 4dac_A 8 ANVKRLEKEVGKLEGEV 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHhhhhhhh
Confidence 46899998887665554
No 43
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=21.04 E-value=2e+02 Score=19.40 Aligned_cols=49 Identities=16% Similarity=0.291 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------c--chHHHHHHHHHHHHHh
Q psy13695 13 TGVLKRIAKEKTTYIKEVGIEQERYEKFKSEG-------S--DEFKLKKQLEVIQESQ 61 (111)
Q Consensus 13 tg~vkRL~KE~~~Y~kE~~~q~~klek~k~~g-------~--de~~iKkq~~vl~Et~ 61 (111)
..+|..+++.+..++.|+.....+++.+...| . +.-.|......|.+.-
T Consensus 32 l~~v~~ll~~h~~~~~ei~~~~~~~~~~~~~g~~L~~~~~~~~~~~i~~~l~~L~~~w 89 (214)
T 1s35_A 32 LPEAEQLLQQHAGIKDEIDGHQDSYQRVKESGEKVIQGQTDPEYLLLGQRLEGLDTGW 89 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 35689999999999999999888888877543 1 2245666655555443
No 44
>1aqt_A ATP synthase; hydrolase, ATPase, epsilon subunit; 2.30A {Escherichia coli} SCOP: a.2.10.1 b.93.1.1 PDB: 1qo1_J 1bsh_A 1bsn_A 1fs0_E 3oaa_H*
Probab=20.70 E-value=2e+02 Score=19.24 Aligned_cols=38 Identities=21% Similarity=0.214 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhhh
Q psy13695 70 RMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKEIEK 110 (111)
Q Consensus 70 RL~~a~~~L~~~l~~~~~~~~~ee~~~Ake~L~~a~~~l~~ 110 (111)
|.+.++..-++.|.. ..+..++..|+..|..|...|..
T Consensus 93 ~a~~a~~~Ae~~l~~---~~~~~~~~~a~~al~rA~arl~~ 130 (138)
T 1aqt_A 93 RAMEAKRKAEEHISS---SHGDVDYAQASAELAKAIAQLRV 130 (138)
T ss_dssp HHHHHHHHHHHHHTT---CSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh---CcChHHHHHHHHHHHHHHHHHHH
Confidence 555566666666654 23567888899888888776653
No 45
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=20.29 E-value=1.1e+02 Score=17.59 Aligned_cols=27 Identities=7% Similarity=0.201 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy13695 16 LKRIAKEKTTYIKEVGIEQERYEKFKS 42 (111)
Q Consensus 16 vkRL~KE~~~Y~kE~~~q~~klek~k~ 42 (111)
+.++..++..+.+|....+.+++.++.
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567788888888888888888776653
No 46
>2ad6_B Methanol dehydrogenase subunit 2; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: a.137.2.1 PDB: 1g72_B* 2ad7_B* 2ad8_B* 4aah_B*
Probab=20.17 E-value=60 Score=19.98 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcchHHH
Q psy13695 19 IAKEKTTYIKEVGIEQERYEKFKSEGSDEFKL 50 (111)
Q Consensus 19 L~KE~~~Y~kE~~~q~~klek~k~~g~de~~i 50 (111)
|-|...+-..--+....|++.|+..|.=.|++
T Consensus 37 L~KQ~~si~ame~RN~kRv~~fkkTG~~~ydV 68 (69)
T 2ad6_B 37 LNKQEESIKAMDARNAKRIANAKSSGNFVFDV 68 (69)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHSSCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCceeeec
Confidence 44444444444555566777777777666654
Done!