RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy13695
         (111 letters)



>gnl|CDD|217305 pfam02970, TBCA, Tubulin binding cofactor A. 
          Length = 91

 Score = 79.6 bits (197), Expect = 6e-21
 Identities = 43/91 (47%), Positives = 68/91 (74%), Gaps = 1/91 (1%)

Query: 8  TLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIPEC 67
           LKIKTGV+KR+ KE+ +Y KEV  ++ER EK K+EG+DE+ LKKQ EV++E++MM+P+C
Sbjct: 1  QLKIKTGVVKRLIKEEASYEKEVEQQEERVEKLKAEGADEYDLKKQEEVLKETEMMLPDC 60

Query: 68 QRRMVRAYEELKSILDSEQ-DLKDTEDYTIA 97
          +RR+ +A  +L+  L+  +  L++ E+   A
Sbjct: 61 KRRLQKAVADLEEYLEEYEEGLEELEEAKEA 91


>gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like
          protein; Provisional.
          Length = 398

 Score = 27.4 bits (61), Expect = 1.5
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 11/53 (20%)

Query: 33 EQERYEKFKSEGSDEFKLKKQLEVIQESQMMIPE----CQRRMVRAYEELKSI 81
          E++ YEK K        L+K+LE +   +  I E     +R ++RA EE+K I
Sbjct: 17 ERDLYEKLKE-------LEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRI 62


>gnl|CDD|217092 pfam02538, Hydantoinase_B, Hydantoinase B/oxoprolinase.  This
           family includes N-methylhydaintoinase B which converts
           hydantoin to N-carbamyl-amino acids, and 5-oxoprolinase
           EC:3.5.2.9 which catalyzes the formation of L-glutamate
           from 5-oxo-L-proline. These enzymes are part of the
           oxoprolinase family and are related to pfam01968.
          Length = 527

 Score = 27.0 bits (60), Expect = 2.0
 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 29  EVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKSILDSEQDL 88
           + GI+  R  K      DE+ L+  L  +   Q    E  +R +   +E     D     
Sbjct: 192 QKGID--RIGKL----IDEYGLETVLGYMAHIQDNAEEAIKRKIAKLDEPYGAYDYGVCD 245

Query: 89  KDTEDYTIALQILDDAQKE 107
           +      I ++I  + +K 
Sbjct: 246 RLDTGKLIKVEITINIKKG 264


>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
           protein; Reviewed.
          Length = 782

 Score = 26.7 bits (60), Expect = 2.5
 Identities = 22/101 (21%), Positives = 44/101 (43%), Gaps = 14/101 (13%)

Query: 16  LKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIPECQRRMVR-- 73
           L+R  ++K    +E     +  EK K E      L+++ E +QE +  + E   +  +  
Sbjct: 528 LERELEQK---AEEAEALLKEAEKLKEE------LEEKKEKLQEEEDKLLEEAEKEAQQA 578

Query: 74  ---AYEELKSILDSEQDLKDTEDYTIALQILDDAQKEIEKA 111
              A +E   I+   + L+     ++    L +A+K + KA
Sbjct: 579 IKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKA 619


>gnl|CDD|235878 PRK06851, PRK06851, hypothetical protein; Provisional.
          Length = 367

 Score = 26.1 bits (58), Expect = 5.1
 Identities = 13/38 (34%), Positives = 17/38 (44%)

Query: 46  DEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKSILD 83
           DE KL+K  E I +    I  C +R      E  +I D
Sbjct: 113 DEDKLRKHKEEILKINEEISRCFQRAYEYLNEALAIHD 150


>gnl|CDD|217611 pfam03552, Cellulose_synt, Cellulose synthase.  Cellulose, an
           aggregate of unbranched polymers of beta-1,4-linked
           glucose residues, is the major component of wood and
           thus paper, and is synthesised by plants, most algae,
           some bacteria and fungi, and even some animals. The
           genes that synthesise cellulose in higher plants differ
           greatly from the well-characterized genes found in
           Acetobacter and Agrobacterium sp. More correctly
           designated as 'cellulose synthase catalytic subunits',
           plant cellulose synthase (CesA) proteins are integral
           membrane proteins, approximately 1,000 amino acids in
           length. There are a number of highly conserved residues,
           including several motifs shown to be necessary for
           processive glycosyltransferase activity.
          Length = 716

 Score = 25.9 bits (57), Expect = 6.2
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 8/60 (13%)

Query: 20  AKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELK 79
           A++   + K+  IE    E + S+  D  K K Q + ++E        +R M R YEE K
Sbjct: 59  ARKWVPFCKKHNIEPRAPEFYFSQKIDYLKDKVQPDFVKE--------RRAMKREYEEFK 110


>gnl|CDD|118696 pfam10168, Nup88, Nuclear pore component.  Nup88 can be divided
           into two structural domains; the N-terminal two-thirds
           of the protein has no obvious structural motifs but is
           the region for binding to Nup98, one of the components
           of the nuclear pore. the C-terminal end is a predicted
           coiled-coil domain. Nup88 is overexpressed in tumour
           cells.
          Length = 717

 Score = 25.2 bits (55), Expect = 9.2
 Identities = 25/98 (25%), Positives = 54/98 (55%), Gaps = 7/98 (7%)

Query: 16  LKRIAKEKTTYIKEVG-IEQERYEKFKSEGSDEFKLKKQLEVIQESQ-MMIPECQRRMVR 73
           +K +  +K   ++++    +ER  K  SE ++  KL ++ E  + +Q +++  C+R +  
Sbjct: 567 VKLLQLQKEKQLEDIQDCREER--KSLSERAE--KLAEKFEEAKYNQELLVNRCKRLLQS 622

Query: 74  AYEELKSILDSEQDL-KDTEDYTIALQILDDAQKEIEK 110
           A  +L  + DSE+D+ K+ +     LQ L +  K+++K
Sbjct: 623 ANSQLPVLSDSERDMSKELQRINKQLQHLANGIKQVKK 660


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.312    0.130    0.335 

Gapped
Lambda     K      H
   0.267   0.0746    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,604,764
Number of extensions: 493681
Number of successful extensions: 578
Number of sequences better than 10.0: 1
Number of HSP's gapped: 573
Number of HSP's successfully gapped: 96
Length of query: 111
Length of database: 10,937,602
Length adjustment: 75
Effective length of query: 36
Effective length of database: 7,611,052
Effective search space: 273997872
Effective search space used: 273997872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.2 bits)