RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13695
(111 letters)
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A
{Homo sapiens} SCOP: a.7.5.1
Length = 108
Score = 99.5 bits (248), Expect = 7e-29
Identities = 50/107 (46%), Positives = 80/107 (74%)
Query: 1 MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQES 60
MADPR++ +KIKTGV++R+ KE+ Y KE ++E+ EK ++E + + +KKQ E++QES
Sbjct: 1 MADPRVRQIKIKTGVVRRLVKERVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQES 60
Query: 61 QMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKE 107
+MMIP+CQRR+ AY +L+ IL++E+DL++ E+Y A +LD + E
Sbjct: 61 RMMIPDCQRRLEAAYLDLQRILENEKDLEEAEEYKEARLVLDSVKLE 107
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor);
four-helix-bundle, chaperone; 2.20A {Saccharomyces
cerevisiae} SCOP: a.7.5.1
Length = 106
Score = 79.8 bits (197), Expect = 4e-21
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 9 LKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSE-GSDEFKLKKQLEVIQESQMMIPEC 67
L IK LKR+ KE+ Y +E+ ++ K K + D + LKKQ EV+ +++ ++P
Sbjct: 6 LDIKVKALKRLTKEEGYYQQELKDQEAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLPTL 65
Query: 68 QRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQK 106
++ E+L+ L + Q +D D A+ +
Sbjct: 66 YEKIREFKEDLEQFLKTYQGTEDVSDARSAITSAQELLD 104
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis
thaliana}
Length = 116
Score = 77.7 bits (191), Expect = 4e-20
Identities = 42/108 (38%), Positives = 61/108 (56%), Gaps = 2/108 (1%)
Query: 5 RIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMI 64
I+ LKIKT KRI KE +Y KEV E + K +G+D + LK+Q V+ ES+MMI
Sbjct: 6 TIRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRMMI 65
Query: 65 PECQRRMVRAYEELKSILDS--EQDLKDTEDYTIALQILDDAQKEIEK 110
P+C +R+ A +LKS L E D K+ + A + + D +K+
Sbjct: 66 PDCHKRLESALADLKSTLAELEETDEKEGPEIEDAKKTVADVEKQFPT 113
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 8e-05
Identities = 21/133 (15%), Positives = 44/133 (33%), Gaps = 28/133 (21%)
Query: 4 PRIKT-LKIKTGVLKRIAKE------------KTTYIKEV----GIEQER-----YEKFK 41
R++ LK++ L + KT +V ++ + + K
Sbjct: 132 SRLQPYLKLRQA-LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 42 SEGSDEFKLKKQLEVIQESQMMIPECQR--RMVRAYEELKSILDSEQDLKDTEDYTIALQ 99
+ S E L+ +++ Q+ R + SI + L ++ Y L
Sbjct: 191 NCNSPETVLEMLQKLL--YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 100 ILDDAQ-KEIEKA 111
+L + Q + A
Sbjct: 249 VLLNVQNAKAWNA 261
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.025
Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 12/90 (13%)
Query: 33 EQERYEKFKS---EGSDEFKLKKQLEVIQE-----SQMMIPECQRRMVRAYEE-LKSILD 83
Q + E+F E ++ F + E + + V +++ L L
Sbjct: 31 SQLQ-EQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLT 89
Query: 84 S-EQD-LKDTEDYTIALQILDDAQKEIEKA 111
E L+ + + +A ++L + + K
Sbjct: 90 EFENCYLEGNDIHALAAKLLQENDTTLVKT 119
>1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A
{Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21
Length = 763
Score = 28.6 bits (63), Expect = 0.43
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 71 MVRAYEELKSILDSEQDLKDTEDYTIALQILD 102
A ++ L S +L + IALQ+LD
Sbjct: 52 QATAELDVIEFLKSSIELDWEIFWNIALQLLD 83
>1k2x_A Putative L-asparaginase; NTN hydrolase, asparginase,
autoproteolysis, hydrolase; HET: CME; 1.65A {Escherichia
coli} SCOP: d.153.1.5 PDB: 1jn9_A* 1t3m_A 2zal_A
Length = 177
Score = 26.2 bits (58), Expect = 2.4
Identities = 9/51 (17%), Positives = 21/51 (41%)
Query: 43 EGSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKSILDSEQDLKDTED 93
EG++ F + +E + +++ A +E ++LD D +
Sbjct: 124 EGAENFAFARGMERVSPEIFSTSLRYEQLLAARKEGATVLDHSGAPLDEKQ 174
>1k8t_A Calmodulin-sensitive adenylate cyclase; edema factor, adenylyl
cyclase, anthrax, toxin,L; 2.60A {Bacillus anthracis}
SCOP: e.41.1.1 PDB: 1k90_A* 1k93_A 1lvc_A* 1s26_A*
1sk6_A* 1pk0_A*
Length = 510
Score = 24.9 bits (53), Expect = 6.8
Identities = 17/95 (17%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 6 IKTLKIKTGVLKRIAKEKTTYIKEVGIEQ-ERYEKFKSEGSDEFKLKKQLEVIQESQMMI 64
I T+ +K ++ + + V + ++ E K E + + +
Sbjct: 364 INTIPTSAEFIKNLSSIRRSSNVGVYKDSGDKDEFAKKESVKKIAGYLSDYYNSANHIFS 423
Query: 65 PECQR-----RMVRAYEELKSILDSEQDLKDTEDY 94
E +R R ++AY E++++L S+Q + ++Y
Sbjct: 424 QEKKRKISIFRGIQAYNEIENVLKSKQIAPEYKNY 458
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP:
d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Length = 224
Score = 24.4 bits (54), Expect = 8.6
Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Query: 17 KRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIPE 66
+A++ IK+ E E F + G + +K + ++ E+ I
Sbjct: 125 HELAEKNYDVIKKKVSWHEARETFANRG-ESYK----VSILDEN---IAH 166
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor, protein
BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 24.2 bits (53), Expect = 8.7
Identities = 9/64 (14%), Positives = 19/64 (29%), Gaps = 1/64 (1%)
Query: 48 FKLKKQLEVIQESQMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKE 107
KL + + IQ Q + K E I + +D+ +
Sbjct: 49 IKLGEYTQAIQMCQQGL-RYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELPEG 107
Query: 108 IEKA 111
+++
Sbjct: 108 YDRS 111
>3osr_A Maltose-binding periplasmic protein, green fluore protein;
engineered protein, sensor protein, fluorescent protein,
MBP maltose sensor; HET: C12 MAL; 2.00A {Escherichia
coli}
Length = 653
Score = 24.6 bits (53), Expect = 9.4
Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 11/95 (11%)
Query: 18 RIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMM--IPECQRRMVRAY 75
RI + + ++ I + E + + + ++ +E Q+ ++M IP+
Sbjct: 568 RIELKGIDFKEDGNILGHKLEYNFNNPAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVR 627
Query: 76 EELKSILDSEQDLKDTEDYTIALQILDDAQKEIEK 110
+ + Q + + L DAQ I K
Sbjct: 628 TAVINAASGRQTVDED---------LKDAQTRITK 653
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.130 0.335
Gapped
Lambda K H
0.267 0.0593 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,641,229
Number of extensions: 89774
Number of successful extensions: 336
Number of sequences better than 10.0: 1
Number of HSP's gapped: 332
Number of HSP's successfully gapped: 60
Length of query: 111
Length of database: 6,701,793
Length adjustment: 75
Effective length of query: 36
Effective length of database: 4,607,718
Effective search space: 165877848
Effective search space used: 165877848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.7 bits)