RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13695
         (111 letters)



>d1h7ca_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 103

 Score = 93.6 bits (233), Expect = 6e-27
 Identities = 46/102 (45%), Positives = 76/102 (74%)

Query: 4   PRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMM 63
           PR++ +KIKTGV++R+ KE+  Y KE   ++E+ EK ++E  + + +KKQ E++QES+MM
Sbjct: 1   PRVRQIKIKTGVVRRLVKERVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQESRMM 60

Query: 64  IPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQ 105
           IP+CQRR+  AY +L+ IL++E+DL++ E+Y  A  +LD  +
Sbjct: 61  IPDCQRRLEAAYLDLQRILENEKDLEEAEEYKEARLVLDSVK 102


>d1qsda_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Baker's yeast
           (Saccharomyces cerevisiae), Rbl2p [TaxId: 4932]}
          Length = 102

 Score = 74.7 bits (184), Expect = 1e-19
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 1/97 (1%)

Query: 9   LKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSE-GSDEFKLKKQLEVIQESQMMIPEC 67
           L IK   LKR+ KE+  Y +E+  ++    K K +   D + LKKQ EV+ +++ ++P  
Sbjct: 3   LDIKVKALKRLTKEEGYYQQELKDQEAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLPTL 62

Query: 68  QRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDA 104
             ++    E+L+  L + Q  +D  D   A+    + 
Sbjct: 63  YEKIREFKEDLEQFLKTYQGTEDVSDARSAITSAQEL 99


>d1jmma_ b.30.6.1 (A:) V-region of surface antigen I/II (SA I/II,
           PAC) {Streptococcus mutans [TaxId: 1309]}
          Length = 377

 Score = 25.0 bits (54), Expect = 2.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 89  KDTEDYTIALQILDDAQKEIEKA 111
           KD  DY + L+  +D Q  I+ A
Sbjct: 2   KDLADYPVKLKAYEDEQASIKAA 24


>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
           {Thermotoga maritima [TaxId: 2336]}
          Length = 333

 Score = 25.1 bits (54), Expect = 2.2
 Identities = 13/60 (21%), Positives = 30/60 (50%)

Query: 52  KQLEVIQESQMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKEIEKA 111
           K++E +     + PE  +     Y +++ I +    +K+T+++   L+   + + EIEK 
Sbjct: 6   KEIEKLLARPDLTPEQMKNYGMEYAKIEEIENITNRIKETQEFIELLREEGENELEIEKY 65


>d3thia_ c.94.1.1 (A:) Thiaminase I {Paenibacillus thiaminolyticus
           [TaxId: 49283]}
          Length = 362

 Score = 24.3 bits (51), Expect = 3.9
 Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 75  YEELKSILDSEQDLKDTEDYTIALQILDDAQKEIEKA 111
           Y EL  I++   +        +    L DA++ + +A
Sbjct: 325 YSELAQIVNKPSNRVFRLGPEVR-TWLKDAKQVLPEA 360


>d2d0ta1 a.266.1.2 (A:12-403) Indoleamine 2,3-dioxygenase {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 392

 Score = 23.8 bits (51), Expect = 6.4
 Identities = 6/48 (12%), Positives = 16/48 (33%)

Query: 55  EVIQESQMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILD 102
           + +Q+ +  +P   R  + + E   S+ +      D          + 
Sbjct: 279 QFLQDMRRYMPPAHRNFLCSLESNPSVREFVLSKGDAGLREAYDACVK 326


>d1lnsa1 a.40.2.1 (A:1-145) X-Prolyl dipeptidyl aminopeptidase PepX,
           N-terminal domain {Lactococcus lactis [TaxId: 1358]}
          Length = 145

 Score = 23.2 bits (50), Expect = 8.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 78  LKSILDSEQDLKDTEDYTIALQILD 102
           +   L S  +L     + IALQ+LD
Sbjct: 59  VIEFLKSSIELDWEIFWNIALQLLD 83


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.130    0.335 

Gapped
Lambda     K      H
   0.267   0.0405    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 399,519
Number of extensions: 17982
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 33
Length of query: 111
Length of database: 2,407,596
Length adjustment: 70
Effective length of query: 41
Effective length of database: 1,446,496
Effective search space: 59306336
Effective search space used: 59306336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.7 bits)