RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13699
(308 letters)
>gnl|CDD|163658 cd07415, MPP_PP2A_PP4_PP6, PP2A, PP4, and PP6 phosphoprotein
phosphatases, metallophosphatase domain. PP2A-like
family of phosphoprotein phosphatases (PPP's) including
PP4 and PP6. PP2A (Protein phosphatase 2A) is a
critical regulator of many cellular activities. PP2A
comprises about 1% of total cellular proteins. PP2A,
together with protein phosphatase 1 (PP1), accounts for
more than 90% of all serine/threonine phosphatase
activities in most cells and tissues. The PP2A subunit
in addition to having a catalytic domain homologous to
PP1, has a unique C-terminal tail, containing a motif
that is conserved in the catalytic subunits of all
PP2A-like phosphatases including PP4 and PP6, and has an
important role in PP2A regulation. The PP2A-like family
of phosphatases all share a similar heterotrimeric
architecture, that includes: a 65kDa scaffolding subunit
(A), a 36kDa catalytic subunit (C), and one of 18
regulatory subunits (B). The PPP (phosphoprotein
phosphatase) family, to which PP2A belongs, is one of
two known protein phosphatase families specific for
serine and threonine. The PPP family also includes:
PP1, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC,
PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic
domain is defined by three conserved motifs (-GDXHG-,
-GDXVDRG- and -GNHE-). The PPP enzyme family is ancient
with members found in all eukaryotes, and in most
bacterial and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 285
Score = 633 bits (1636), Expect = 0.0
Identities = 221/285 (77%), Positives = 259/285 (90%)
Query: 7 DLDRQIEQLKRCDPIKESEVKALCAKAREILVEESNVQRIDSPVTVCGDIHGQFYDLKEL 66
DLD+ IEQLK+C+ + ESEVK+LC KA+EILV+ESNVQR+ SPVTVCGDIHGQFYDL EL
Sbjct: 1 DLDKWIEQLKKCELLPESEVKSLCEKAKEILVKESNVQRVRSPVTVCGDIHGQFYDLLEL 60
Query: 67 FKVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYG 126
F+VGGD P+TNYLF+GD+VDRG+YSVETFLLLLALKVRYPDRITL+RGNHESRQITQVYG
Sbjct: 61 FRVGGDPPDTNYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLLRGNHESRQITQVYG 120
Query: 127 FYDECLRKYGSITVWRYCTEIFDYLSLSAIIDGRIFCVHGGLSPSIQTLDQIRTIDRKQE 186
FYDECLRKYG+ VW+YCT++FDYL L+A+ID +IFCVHGGLSPSI TLDQIR IDR QE
Sbjct: 121 FYDECLRKYGNANVWKYCTDLFDYLPLAALIDNQIFCVHGGLSPSIDTLDQIRAIDRFQE 180
Query: 187 VPHDGPMCDLLWSDPEDTQGWGVSPRGAGYLFGSDVVASFNAANNIDMICRAHQLVMEGY 246
VPH+GPMCDLLWSDP+D +GWG+SPRGAGYLFG DVV FN N + +ICRAHQLVMEGY
Sbjct: 181 VPHEGPMCDLLWSDPDDIEGWGISPRGAGYLFGQDVVEEFNHNNGLTLICRAHQLVMEGY 240
Query: 247 KWHFNETVLTVWSAPNYCYRCGNVAAILELNENLQREFTIFEAAP 291
+W F++ ++TVWSAPNYCYRCGNVA+I+EL+E+L+R F +FEAAP
Sbjct: 241 QWMFDDKLVTVWSAPNYCYRCGNVASIMELDEHLKRSFKVFEAAP 285
>gnl|CDD|173488 PTZ00239, PTZ00239, serine/threonine protein phosphatase 2A;
Provisional.
Length = 303
Score = 461 bits (1188), Expect = e-165
Identities = 181/303 (59%), Positives = 230/303 (75%), Gaps = 2/303 (0%)
Query: 7 DLDRQIEQLKRCDPIKESEVKALCAKAREILVEESNVQRIDSPVTVCGDIHGQFYDLKEL 66
D+DR I L + E ++K +C +A+EI +EESNVQ + +PV VCGDIHGQFYDL+ L
Sbjct: 2 DIDRHIATLLNGGCLPERDLKLICERAKEIFLEESNVQPVRAPVNVCGDIHGQFYDLQAL 61
Query: 67 FKVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYG 126
FK GGD+P NY+F+GDFVDRG+ SVET LL LKV+YP ITL+RGNHESRQ TQVYG
Sbjct: 62 FKEGGDIPNANYIFIGDFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHESRQCTQVYG 121
Query: 127 FYDECLRKYGSITVWRYCTEIFDYLSLSAIIDGRIFCVHGGLSPSIQTLDQIRTIDRKQE 186
FY+E LRKYG+ WR ++FD L L+A+I+G+I CVHGGLSP ++T+DQIRTIDRK E
Sbjct: 122 FYEEILRKYGNSNPWRLFMDVFDCLPLAALIEGQILCVHGGLSPDMRTIDQIRTIDRKIE 181
Query: 187 VPHDGPMCDLLWSDPEDTQGWGVSPRGAGYLFGSDVVASFNAANNIDMICRAHQLVMEGY 246
+PH+GP CDL+WSDPE+ + W V+ RGAGYLFG+ V F N++ +ICRAHQLVMEGY
Sbjct: 182 IPHEGPFCDLMWSDPEEVEYWAVNSRGAGYLFGAKVTKEFCRLNDLTLICRAHQLVMEGY 241
Query: 247 KWHFNETVL-TVWSAPNYCYRCGNVAAILELNENLQREFTIFEAAPQESRGIPSKKPQAD 305
K+ F + L TVWSAPNYCYRCGN+A+IL L+ENLQ+ + F+ P+ ++ I K
Sbjct: 242 KYWFPDQNLVTVWSAPNYCYRCGNIASILCLDENLQQTWKTFKEVPESAKSINPKN-VLP 300
Query: 306 YFL 308
YFL
Sbjct: 301 YFL 303
>gnl|CDD|197547 smart00156, PP2Ac, Protein phosphatase 2A homologues, catalytic
domain. Large family of serine/threonine phosphatases,
that includes PP1, PP2A and PP2B (calcineurin) family
members.
Length = 271
Score = 388 bits (1000), Expect = e-137
Identities = 137/270 (50%), Positives = 189/270 (70%), Gaps = 2/270 (0%)
Query: 23 ESEVKALCAKAREILVEESNVQRIDSPVTVCGDIHGQFYDLKELFKVGGDVPETNYLFMG 82
+ E+ L + +EI +E N+ + +PVTVCGDIHGQF DL LF G PETNY+F+G
Sbjct: 3 KEEILELLREVKEIFRQEPNLVEVSAPVTVCGDIHGQFDDLLRLFDKNGQPPETNYVFLG 62
Query: 83 DFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSITVWR 142
D+VDRG +S+E LLL ALK+ YP+RI L+RGNHESR + ++YGFYDEC RKYG ++
Sbjct: 63 DYVDRGPFSIEVILLLFALKILYPNRIVLLRGNHESRSMNEIYGFYDECKRKYGE-RIYE 121
Query: 143 YCTEIFDYLSLSAIIDGRIFCVHGGLSPSIQTLDQIRTIDRKQEVPHDGPMCDLLWSDPE 202
E F +L L+A+I+G+I C+HGGLSP + TLD IR + R QE P DG + DLLWSDP+
Sbjct: 122 KFNEAFSWLPLAALINGKILCMHGGLSPDLTTLDDIRKLKRPQEPPDDGLLIDLLWSDPD 181
Query: 203 DTQ-GWGVSPRGAGYLFGSDVVASFNAANNIDMICRAHQLVMEGYKWHFNETVLTVWSAP 261
G+G S RGA Y+FG D V F NN+ +I RAHQ+V +GY++ + ++T++SAP
Sbjct: 182 QPVNGFGPSIRGASYIFGPDAVDEFLKKNNLKLIIRAHQVVDDGYEFFADGKLVTIFSAP 241
Query: 262 NYCYRCGNVAAILELNENLQREFTIFEAAP 291
NYC R GN AA+L+++++L+ F F+
Sbjct: 242 NYCDRFGNKAAVLKVDKDLKLTFEQFKPGK 271
>gnl|CDD|163657 cd07414, MPP_PP1_PPKL, PP1, PPKL (PP1 and kelch-like) enzymes, and
related proteins, metallophosphatase domain. PP1
(protein phosphatase type 1) is a serine/threonine
phosphatase that regulates many cellular processes
including: cell-cycle progression, protein synthesis,
muscle contraction, carbohydrate metabolism,
transcription and neuronal signaling, through its
interaction with at least 180 known targeting proteins.
PP1 occurs in all tissues and regulates many pathways,
ranging from cell-cycle progression to carbohydrate
metabolism. Also included here are the PPKL (PP1 and
kelch-like) enzymes including the PPQ, PPZ1, and PPZ2
fungal phosphatases. These PPKLs have a large
N-terminal kelch repeat in addition to a C-terminal
phosphoesterase domain. The PPP (phosphoprotein
phosphatase) family, to which PP1 belongs, is one of two
known protein phosphatase families specific for serine
and threonine. The PPP family also includes: PP2A, PP2B
(calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE,
PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain
is defined by three conserved motifs (-GDXHG-, -GDXVDRG-
and -GNHE-). The PPP enzyme family is ancient with
members found in all eukaryotes, and in most bacterial
and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 293
Score = 333 bits (855), Expect = e-115
Identities = 139/293 (47%), Positives = 203/293 (69%), Gaps = 10/293 (3%)
Query: 7 DLDRQIEQL--------KRCDPIKESEVKALCAKAREILVEESNVQRIDSPVTVCGDIHG 58
D+D IE+L + + E+E++ LC K+REI + + + +++P+ +CGDIHG
Sbjct: 1 DIDSIIERLLEVRGSRPGKNVQLTEAEIRGLCLKSREIFLSQPILLELEAPLKICGDIHG 60
Query: 59 QFYDLKELFKVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHES 118
Q+YDL LF+ GG PE+NYLF+GD+VDRG S+ET LLLA K++YP+ L+RGNHE
Sbjct: 61 QYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHEC 120
Query: 119 RQITQVYGFYDECLRKYGSITVWRYCTEIFDYLSLSAIIDGRIFCVHGGLSPSIQTLDQI 178
I ++YGFYDEC R+Y +I +W+ T+ F+ L ++AIID +IFC+HGGLSP +Q+++QI
Sbjct: 121 ASINRIYGFYDECKRRY-NIKLWKTFTDCFNCLPVAAIIDEKIFCMHGGLSPDLQSMEQI 179
Query: 179 RTIDRKQEVPHDGPMCDLLWSDPE-DTQGWGVSPRGAGYLFGSDVVASFNAANNIDMICR 237
R I R +VP G +CDLLWSDP+ D QGWG + RG + FG DVVA F +++D+ICR
Sbjct: 180 RRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGKDVVAKFLNKHDLDLICR 239
Query: 238 AHQLVMEGYKWHFNETVLTVWSAPNYCYRCGNVAAILELNENLQREFTIFEAA 290
AHQ+V +GY++ ++T++SAPNYC N A++ ++E L F I + A
Sbjct: 240 AHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPA 292
>gnl|CDD|163659 cd07416, MPP_PP2B, PP2B, metallophosphatase domain. PP2B
(calcineurin) is a unique serine/threonine protein
phosphatase in its regulation by a second messenger
(calcium and calmodulin). PP2B is involved in many
biological processes including immune responses, the
second messenger cAMP pathway, sodium/potassium ion
transport in the nephron, cell cycle progression in
lower eukaryotes, cardiac hypertrophy, and memory
formation. PP2B is highly conserved from yeast to
humans, but is absent from plants. PP2B is a
heterodimer consisting of a catalytic subunit (CnA) and
a regulatory subunit (CnB); CnB contains four Ca2+
binding motifs referred to as EF hands. The PPP
(phosphoprotein phosphatase) family, to which PP2B
belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP4, PP5, PP6, PP7,
Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP
catalytic domain is defined by three conserved motifs
(-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family
is ancient with members found in all eukaryotes, and in
most bacterial and archeal genomes. Dephosphorylation
of phosphoserines and phosphothreonines on target
proteins plays a central role in the regulation of many
cellular processes. PPPs belong to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 305
Score = 300 bits (770), Expect = e-102
Identities = 124/274 (45%), Positives = 166/274 (60%), Gaps = 16/274 (5%)
Query: 32 KAREILVEESNVQRIDSPVTVCGDIHGQFYDLKELFKVGGDVPETNYLFMGDFVDRGFYS 91
+ EIL +E N+ RI++PVTVCGDIHGQFYDL +LF+VGG T YLF+GD+VDRG++S
Sbjct: 27 EGAEILRQEPNLLRIEAPVTVCGDIHGQFYDLLKLFEVGGSPANTRYLFLGDYVDRGYFS 86
Query: 92 VETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSITVWRYCTEIFDYL 151
+E L L ALK+ YP + L+RGNHE R +T+ + F EC KY S V+ C E FD L
Sbjct: 87 IECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKY-SERVYDACMEAFDCL 145
Query: 152 SLSAIIDGRIFCVHGGLSPSIQTLDQIRTIDRKQEVPHDGPMCDLLWSDP-EDTQGWGVS 210
L+A+++ + CVHGGLSP ++TLD IR +DR +E P GPMCDLLWSDP ED
Sbjct: 146 PLAALMNQQFLCVHGGLSPELKTLDDIRKLDRFREPPAFGPMCDLLWSDPLEDFGNEKTQ 205
Query: 211 P-------RGAGYLFGSDVVASFNAANNIDMICRAHQLVMEGYKWHFNE------TVLTV 257
RG Y + V F NN+ I RAH+ GY+ + +++T+
Sbjct: 206 EHFVHNTVRGCSYFYSYRAVCEFLQKNNLLSIIRAHEAQDAGYRMYRKSQTTGFPSLITI 265
Query: 258 WSAPNYCYRCGNVAAILELNENLQREFTIFEAAP 291
+SAPNY N AA+L+ N+ F +P
Sbjct: 266 FSAPNYLDVYNNKAAVLKYENNVMN-IRQFNCSP 298
>gnl|CDD|185658 PTZ00480, PTZ00480, serine/threonine-protein phosphatase;
Provisional.
Length = 320
Score = 290 bits (744), Expect = 7e-98
Identities = 136/311 (43%), Positives = 205/311 (65%), Gaps = 10/311 (3%)
Query: 7 DLDRQIEQL---KRCDP-----IKESEVKALCAKAREILVEESNVQRIDSPVTVCGDIHG 58
D+D IE+L + P + E+EV+ LC KAR+I + + + +++P+ +CGD+HG
Sbjct: 10 DVDNIIERLLSVRGSKPGKNVNLTEAEVRGLCIKARDIFISQPILLELEAPLKICGDVHG 69
Query: 59 QFYDLKELFKVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHES 118
Q++DL LF+ GG PE+NYLF+GD+VDRG S+ET LLLA K++YP+ L+RGNHE
Sbjct: 70 QYFDLLRLFEYGGYPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHEC 129
Query: 119 RQITQVYGFYDECLRKYGSITVWRYCTEIFDYLSLSAIIDGRIFCVHGGLSPSIQTLDQI 178
I ++YGFYDEC R+Y +I +W+ T+ F+ L ++A+ID +I C+HGGLSP + L+QI
Sbjct: 130 ASINRIYGFYDECKRRY-TIKLWKTFTDCFNCLPVAALIDEKILCMHGGLSPELSNLEQI 188
Query: 179 RTIDRKQEVPHDGPMCDLLWSDPE-DTQGWGVSPRGAGYLFGSDVVASFNAANNIDMICR 237
R I R +VP G +CDLLWSDP+ D QGW + RG Y+F ++V F + +D+ICR
Sbjct: 189 RRIMRPTDVPDTGLLCDLLWSDPDKDVQGWADNERGVSYVFSQEIVQVFLKKHELDLICR 248
Query: 238 AHQLVMEGYKWHFNETVLTVWSAPNYCYRCGNVAAILELNENLQREFTIFEAAPQESRGI 297
AHQ+V +GY++ ++T++SAPNYC N +++ ++E+L F I + A Q
Sbjct: 249 AHQVVEDGYEFFSKRQLVTLFSAPNYCGEFDNAGSMMTIDESLMCSFQILKPAEQGQGAS 308
Query: 298 PSKKPQADYFL 308
KP + F+
Sbjct: 309 QQNKPGSAKFV 319
>gnl|CDD|163660 cd07417, MPP_PP5_C, PP5, C-terminal metallophosphatase domain.
Serine/threonine protein phosphatase-5 (PP5) is a member
of the PPP gene family of protein phosphatases that is
highly conserved among eukaryotes and widely expressed
in mammalian tissues. PP5 has a C-terminal phosphatase
domain and an extended N-terminal TPR (tetratricopeptide
repeat) domain containing three TPR motifs. The PPP
(phosphoprotein phosphatase) family, to which PP5
belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 316
Score = 284 bits (730), Expect = 1e-95
Identities = 126/309 (40%), Positives = 182/309 (58%), Gaps = 16/309 (5%)
Query: 3 EYIQDLDRQIEQLKRCDPIKESEVKALCAKAREILVEESNVQRIDSP----VTVCGDIHG 58
E+++++ IE K + + + + +E+L + ++ I P +TVCGD HG
Sbjct: 14 EFVKEM---IEWFKDQKKLHKKYAYQILLQVKELLKKLPSLVEITIPEGEKITVCGDTHG 70
Query: 59 QFYDLKELFKVGGDVPETN-YLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHE 117
QFYDL +F++ G ETN YLF GDFVDRG +SVE L L A K+ YP+ L RGNHE
Sbjct: 71 QFYDLLNIFELNGLPSETNPYLFNGDFVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHE 130
Query: 118 SRQITQVYGFYDECLRKYGSITVWRYCTEIFDYLSLSAIIDGRIFCVHGGL-SPSIQTLD 176
+ + ++YGF E KY ++ +E+F++L L+ +I+G++ VHGGL S TLD
Sbjct: 131 TDNMNKMYGFEGEVKAKYNE-QMFDLFSEVFNWLPLAHLINGKVLVVHGGLFSDDGVTLD 189
Query: 177 QIRTIDRKQEVPHDGPMCDLLWSDPEDTQGWGVSPRGAGYLFGSDVVASFNAANNIDMIC 236
IR IDR ++ P G MC+LLWSDP+ G S RG G FG DV F NN++ I
Sbjct: 190 DIRKIDRFRQPPDSGLMCELLWSDPQPQPGRSPSKRGVGCQFGPDVTKRFLEENNLEYII 249
Query: 237 RAHQLVMEGYKWHFNETVLTVWSAPNYCYRCGNVAAILELNE-NLQREFTIFEAAPQESR 295
R+H++ EGY+ + +TV+SAPNYC + GN A + + +L+ +FT FEA P
Sbjct: 250 RSHEVKDEGYEVEHDGKCITVFSAPNYCDQMGNKGAFIRITGSDLKPKFTQFEAVPH--- 306
Query: 296 GIPSKKPQA 304
P+ KP A
Sbjct: 307 --PNVKPMA 313
>gnl|CDD|163662 cd07419, MPP_Bsu1_C, Arabidopsis thaliana Bsu1 phosphatase and
related proteins, C-terminal metallophosphatase domain.
Bsu1 encodes a nuclear serine-threonine protein
phosphatase found in plants and protozoans. Bsu1 has a
C-terminal phosphatase domain and an N-terminal
Kelch-repeat domain. Bsu1 is preferentially expressed
in elongating plant cells. It modulates the
phosphorylation state of Bes1, a transcriptional
regulator phosphorylated by the glycogen synthase kinase
Bin2, as part of a steroid hormone signal transduction
pathway. The PPP (phosphoprotein phosphatase) family,
to which Bsu1 belongs, is one of two known protein
phosphatase families specific for serine and threonine.
The PPP family also includes: PP1, PP2A, PP2B
(calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE,
PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain
is defined by three conserved motifs (-GDXHG-, -GDXVDRG-
and -GNHE-). The PPP enzyme family is ancient with
members found in all eukaryotes, and in most bacterial
and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 311
Score = 254 bits (650), Expect = 1e-83
Identities = 114/283 (40%), Positives = 161/283 (56%), Gaps = 22/283 (7%)
Query: 20 PIKESEVKALCAKAREILVEESNVQRIDSPVTVCGDIHGQFYDLKELF--------KVGG 71
+E+ LC A +I +E V R+ +P+ + GDIHGQF DL LF + G
Sbjct: 20 FFNWNEILELCDAAEDIFKQEPMVLRLRAPIKIFGDIHGQFGDLMRLFDEYGSPVTEAAG 79
Query: 72 DVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDEC 131
D+ +YLF+GD+VDRG S+ET LLLALKV+YP++I LIRGNHE R I ++GF +EC
Sbjct: 80 DIEYIDYLFLGDYVDRGSNSLETICLLLALKVKYPNQIHLIRGNHEDRDINALFGFREEC 139
Query: 132 LRKYGS-----ITVWRYCTEIFDYLSLSAIIDGRIFCVHGGLSPSIQTLDQIRTIDRKQE 186
+ G +VWR +F++L L+AII+ +I C+HGG+ SI + +I + R
Sbjct: 140 KERLGEDPNDGDSVWRRINRLFEWLPLAAIIEDKILCMHGGIGRSINHVSEIEDLKRPLT 199
Query: 187 VPHDGP-MCDLLWSDPEDTQGWGVS------PRGAG--YLFGSDVVASFNAANNIDMICR 237
+ + DLLWSDP + PRG G FG D V F N++ MI R
Sbjct: 200 MEFGEQVVMDLLWSDPTENDSVLGLRPNAIDPRGPGLIVKFGPDRVHRFLEENDLQMIIR 259
Query: 238 AHQLVMEGYKWHFNETVLTVWSAPNYCYRCGNVAAILELNENL 280
AH+ VM+G++ ++T++SA NYC GN AIL L +L
Sbjct: 260 AHECVMDGFERFAQGKLITLFSATNYCGTAGNAGAILVLGRDL 302
>gnl|CDD|140271 PTZ00244, PTZ00244, serine/threonine-protein phosphatase PP1;
Provisional.
Length = 294
Score = 250 bits (639), Expect = 3e-82
Identities = 115/271 (42%), Positives = 176/271 (64%), Gaps = 2/271 (0%)
Query: 21 IKESEVKALCAKAREILVEESNVQRIDSPVTVCGDIHGQFYDLKELFKVGGDVPETNYLF 80
I+E +++A+ + REI + + + I PV VCGD HGQ+YDL +F+ G P +NYLF
Sbjct: 25 IREEDIRAVLTEVREIFMSQPMLLEIRPPVRVCGDTHGQYYDLLRIFEKCGFPPYSNYLF 84
Query: 81 MGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSITV 140
+GD+VDRG +SVET L K+ YP+ L+RGNHE I ++YGF+D+ R+Y +I +
Sbjct: 85 LGDYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECASINKMYGFFDDVKRRY-NIKL 143
Query: 141 WRYCTEIFDYLSLSAIIDGRIFCVHGGLSPSIQTLDQIRTIDRKQEVPHDGPMCDLLWSD 200
++ T++F+ + + +I +I C+HGGLSP + +L + I+R +VP G +CDLLW+D
Sbjct: 144 FKAFTDVFNTMPVCCVISEKIICMHGGLSPDLTSLASVNEIERPCDVPDRGILCDLLWAD 203
Query: 201 PED-TQGWGVSPRGAGYLFGSDVVASFNAANNIDMICRAHQLVMEGYKWHFNETVLTVWS 259
PED +G+ S RG YLFG D+V F ++D+I RAHQ++ GY + + ++TV+S
Sbjct: 204 PEDEVRGFLESDRGVSYLFGEDIVNDFLDMVDMDLIVRAHQVMERGYGFFASRQLVTVFS 263
Query: 260 APNYCYRCGNVAAILELNENLQREFTIFEAA 290
APNYC N AA++ +++ LQ F I A
Sbjct: 264 APNYCGEFDNDAAVMNIDDKLQCSFLIIPAR 294
>gnl|CDD|163613 cd00144, MPP_PPP_family, phosphoprotein phosphatases of the
metallophosphatase superfamily, metallophosphatase
domain. The PPP (phosphoprotein phosphatase) family is
one of two known protein phosphatase families specific
for serine and threonine. This family includes: PP1,
PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1,
RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP
catalytic domain is defined by three conserved motifs
(-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family
is ancient with members found in all eukaryotes, and in
most bacterial and archeal genomes. Dephosphorylation
of phosphoserines and phosphothreonines on target
proteins plays a central role in the regulation of many
cellular processes. PPPs belong to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 225
Score = 227 bits (580), Expect = 3e-74
Identities = 96/235 (40%), Positives = 125/235 (53%), Gaps = 19/235 (8%)
Query: 51 TVCGDIHGQFYDLKELFKVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRIT 110
V GDIHG DL L + G P +F+GD+VDRG SVE LLLALK+ PD +
Sbjct: 1 YVIGDIHGCLDDLLRLLEKIGFPPNDKLIFLGDYVDRGPDSVEVIDLLLALKIL-PDNVI 59
Query: 111 LIRGNHESRQITQVYGFYDEC--------LRKYGSITVWRYCTEIFDYLSLSAIID-GRI 161
L+RGNHE + +YGFYDE L K +W ++F YL L+A+I+ ++
Sbjct: 60 LLRGNHEDMLLNFLYGFYDEDEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKKV 119
Query: 162 FCVHGGLSPSIQTLDQIRTIDRKQEVPHDGPMCDLLWSDPEDTQGWGVSPRGAGYLFGSD 221
CVHGGLSP + +QI +E P D DLLWSDP + G S R G G D
Sbjct: 120 LCVHGGLSPGLPLEEQI------KEEPEDQLPEDLLWSDPLELPGGFGSSRRGG---GPD 170
Query: 222 VVASFNAANNIDMICRAHQLVMEGYKWHFNETVLTVWSAPNYCYRCGNVAAILEL 276
V F N + +I R H V EGY++ + ++T+ S NYC GN A L L
Sbjct: 171 AVEWFLKKNGLKLIVRGHTPVEEGYEFGHDGNLITIDSGCNYCGGGGNKLAALVL 225
>gnl|CDD|163663 cd07420, MPP_RdgC, Drosophila melanogaster RdgC and related
proteins, metallophosphatase domain. RdgC (retinal
degeneration C) is a vertebrate serine-threonine protein
phosphatase that is required to prevent light-induced
retinal degeneration. In addition to its catalytic
domain, RdgC has two C-terminal EF hands. Homologs of
RdgC include the human phosphatases protein phosphatase
with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1
transcripts are present at low levels in the retina,
PPEF-2 transcripts and PPEF-2 protein are present at
high levels in photoreceptors. The PPP (phosphoprotein
phosphatase) family, to which RdgC belongs, is one of
two known protein phosphatase families specific for
serine and threonine. The PPP family also includes:
PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1,
PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic
domain is defined by three conserved motifs (-GDXHG-,
-GDXVDRG- and -GNHE-). The PPP enzyme family is ancient
with members found in all eukaryotes, and in most
bacterial and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 321
Score = 172 bits (438), Expect = 9e-52
Identities = 98/288 (34%), Positives = 146/288 (50%), Gaps = 38/288 (13%)
Query: 33 AREILVEESNVQRIDS----PVTVCGDIHGQFYDLKELF-KVGGDVPETNYLFMGDFVDR 87
AR++L + N+ R+ + VT+CGD+HG+ DL +F K G PE Y+F GDFVDR
Sbjct: 32 ARKVLKQLPNISRVSTSISKQVTICGDLHGKLDDLFLIFYKNGLPSPENPYVFNGDFVDR 91
Query: 88 GFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYG--SITVWRYCT 145
G S+E ++L A + YP+ + L RGNHE + YGF E + KY + R
Sbjct: 92 GKRSIEILIILFAFFLVYPNEVHLNRGNHEDHIMNLRYGFTKEVMSKYKLHGKKILRLLE 151
Query: 146 EIFDYLSLSAIIDGRIFCVHGGLSPSIQTLDQIRTIDR----------------KQEVPH 189
++F +L L+ IID +I VHGG+S LD + IDR +
Sbjct: 152 DVFSWLPLATIIDNKILVVHGGIS-DSTDLDLLDKIDRHKYVSVLRPPLRKGMEELTGEE 210
Query: 190 DGPMC-----------DLLWSDPEDTQG-WGVSPRGAGYLFGSDVVASFNAANNIDMICR 237
+ P D+LWSDP+ +G + RG G FG DV + + + ++ R
Sbjct: 211 EDPSEPLDKTEWRQILDILWSDPKAQKGCKPNTFRGGGCYFGPDVTSKVLQKHGLSLLIR 270
Query: 238 AHQLVMEGYKWHFNETVLTVWSAPNYCYRCG-NVAAILELNENLQREF 284
+H+ EGY++ N V+T++SA NY Y G N A ++L +L F
Sbjct: 271 SHECKPEGYEFCHNNKVITIFSASNY-YEEGSNRGAYIKLGPDLTPHF 317
>gnl|CDD|163661 cd07418, MPP_PP7, PP7, metallophosphatase domain. PP7 is a plant
phosphoprotein phosphatase that is highly expressed in a
subset of stomata and thought to play an important role
in sensory signaling. PP7 acts as a positive regulator
of signaling downstream of cryptochrome blue light
photoreceptors. PP7 also controls amplification of
phytochrome signaling, and interacts with
nucleotidediphosphate kinase 2 (NDPK2), a positive
regulator of phytochrome signalling. In addition, PP7
interacts with heat shock transcription factor HSF and
up-regulates protective heat shock proteins. PP7 may
also play a role in salicylic acid-dependent defense
signaling. The PPP (phosphoprotein phosphatase) family,
to which PP7 belongs, is one of two known protein
phosphatase families specific for serine and threonine.
The PPP family also includes: PP2A, PP2B (calcineurin),
PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 377
Score = 165 bits (420), Expect = 1e-48
Identities = 109/307 (35%), Positives = 151/307 (49%), Gaps = 62/307 (20%)
Query: 14 QLKRCDPIKESEVKALCAKAREILVEESNVQRID----SPVTVCGDIHGQFYDLKELFKV 69
+L P+ + L A +IL E N RID V V GD+HGQ +D+ L +
Sbjct: 30 ELPSVLPVNVFDSLVLTAH--KILHREPNCVRIDVEDVCEVVVVGDVHGQLHDVLFLLED 87
Query: 70 GGDVPETN--YLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGF 127
G P+ N Y+F GD+VDRG + +ETFLLLL+ KV PDR+ L+RGNHES+ T +YGF
Sbjct: 88 AG-FPDQNRFYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESKFCTSMYGF 146
Query: 128 YDECLRKYGSI--TVWRYCTEIFDYLSLSAIIDGRIFCVHGGL----------------- 168
E L KYG V+R C F+ L L++II GR++ HGGL
Sbjct: 147 EQEVLTKYGDKGKHVYRKCLGCFEGLPLASIIAGRVYTAHGGLFRSPSLPKRKKQKGKNR 206
Query: 169 ----------SPSIQTLDQIRTIDRK-QEVPHDGPMC---DLLWSDPEDTQGWGVSP--- 211
S + TLD + R + P +G D+LWSDP T G+SP
Sbjct: 207 RVLLLEPESESLKLGTLDDLMKARRSVLDPPGEGSNLIPGDVLWSDPSLTP--GLSPNKQ 264
Query: 212 RGAGYLFGSDVVASFNAANNIDMICRAHQ------------LVMEGYKWHFNETV---LT 256
RG G L+G D F NN+ +I R+H+ + +GY + +T
Sbjct: 265 RGIGLLWGPDCTEEFLEKNNLKLIIRSHEGPDAREKRPGLAGMNKGYTVDHDVESGKLIT 324
Query: 257 VWSAPNY 263
++SAP+Y
Sbjct: 325 LFSAPDY 331
>gnl|CDD|223712 COG0639, ApaH, Diadenosine tetraphosphatase and related
serine/threonine protein phosphatases [Signal
transduction mechanisms].
Length = 155
Score = 135 bits (341), Expect = 2e-39
Identities = 69/156 (44%), Positives = 85/156 (54%), Gaps = 10/156 (6%)
Query: 119 RQITQVYGFYDECLRKYGSITVWRY---CTEIFDYLSLSAIIDGR-IFCVHGGLSPSI-Q 173
+T +YGFYDE LRKYG W E FD L L+A+ +G + C HGGLSP + +
Sbjct: 1 MLLTALYGFYDEKLRKYGEELEWLRAAGGLETFDSLPLAAVAEGGKLLCHHGGLSPGLDR 60
Query: 174 TLDQIRTIDRKQ--EVPHDGPMCDLLWSDPE--DTQGWGVSPRGAGYLFGSDVVASFNAA 229
LD I +DR + EVPH G DLLWSDP+ D + W PRG G DV A F
Sbjct: 61 LLDIIEVLDRLRACEVPHAGHTHDLLWSDPDGGDRRIWNPGPRGVPRDGG-DVTAVFGIV 119
Query: 230 NNIDMICRAHQLVMEGYKWHFNETVLTVWSAPNYCY 265
+ +I RAH L F +LT +SAPNYCY
Sbjct: 120 HTPKLIERAHVLYDIDTGAVFGGGLLTAFSAPNYCY 155
>gnl|CDD|215750 pfam00149, Metallophos, Calcineurin-like phosphoesterase. This
family includes a diverse range of phosphoesterases,
including protein phosphoserine phosphatases,
nucleotidases, sphingomyelin phosphodiesterases and
2'-3' cAMP phosphodiesterases as well as nucleases such
as bacterial SbcD or yeast MRE11. The most conserved
regions in this superfamily centre around the metal
chelating residues.
Length = 185
Score = 126 bits (316), Expect = 2e-35
Identities = 65/222 (29%), Positives = 89/222 (40%), Gaps = 64/222 (28%)
Query: 49 PVTVCGDIHGQFYDL---KELFKVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRY 105
+ V GD+HG DL L ++ G+ LF+GD VDRG S+E LL ALK++
Sbjct: 1 RILVIGDLHGGLDDLDLLLLLLELLGEPKPDLVLFLGDLVDRGPPSLEVLALLFALKLKA 60
Query: 106 PDRITLIRGNHESRQITQVYGFYDEC------------------------LRKYGSITVW 141
P + L+RGNH+ GFY EC L G VW
Sbjct: 61 PGPVYLVRGNHDFDSGNSELGFYLECAGLPYVLGNGDVSNGTVEIIGLSSLYGKGGGLVW 120
Query: 142 RYCTEIFDYLSLSAIIDGRIFCVHGGLSPSIQTLDQIRTIDRKQEVPHDGPMCDLLWSDP 201
E+ D L L+A++DG+I VHG LSPS+ + D I
Sbjct: 121 EEFLELLDLLLLAALVDGKILLVHGPLSPSLDSGDDI----------------------- 157
Query: 202 EDTQGWGVSPRGAGYLFGSDVVASFNAANNIDMICRAHQLVM 243
YLFG + + N +D++ R H V
Sbjct: 158 --------------YLFGEEALEDLLKDNGVDLVLRGHTHVP 185
>gnl|CDD|163668 cd07425, MPP_Shelphs, Shewanella-like phosphatases,
metallophosphatase domain. This family includes
bacterial, eukaryotic, and archeal proteins orthologous
to the Shewanella cold-active protein-tyrosine
phosphatase, CAPTPase. CAPTPase is an uncharacterized
protein that belongs to the Shelph (Shewanella-like
phosphatase) family of PPP (phosphoprotein
phosphatases). The PPP family is one of two known
protein phosphatase families specific for serine and
threonine. In addition to Shelps, the PPP family also
includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6,
PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase.
The PPP catalytic domain is defined by three conserved
motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme
family is ancient with members found in all eukaryotes,
and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 208
Score = 45.7 bits (109), Expect = 8e-06
Identities = 32/142 (22%), Positives = 54/142 (38%), Gaps = 31/142 (21%)
Query: 54 GDIHGQFYDLKELFKVGGDVPE-------TNYLFM-GDFVDRGFYSVETFLLLLALKV-- 103
GD+HG +E+ K G + + +L GD DRG +E LL L+
Sbjct: 4 GDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEA 63
Query: 104 -RYPDRITLIRGNHESRQI-----------TQVYGFYDECLRKYGSITVWRYCTEIFDYL 151
+ ++ + GNHE + +G R+ + E+ +L
Sbjct: 64 AKAGGKVHFLLGNHELMNLCGDFRYVHPKYFNEFGGLAMRRREL-----FSPGGELGRWL 118
Query: 152 S---LSAIIDGRIFCVHGGLSP 170
+ ++ +F VHGGL P
Sbjct: 119 RSKPVIVKVNDTLF-VHGGLGP 139
>gnl|CDD|163667 cd07424, MPP_PrpA_PrpB, PrpA and PrpB, metallophosphatase domain.
PrpA and PrpB are bacterial type I serine/threonine and
tyrosine phosphatases thought to modulate the expression
of proteins that protect the cell upon accumulation of
misfolded proteins in the periplasm. The PPP
(phosphoprotein phosphatase) family, to which PrpA and
PrpB belong, is one of two known protein phosphatase
families specific for serine and threonine. This family
also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5,
PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP
catalytic domain is defined by three conserved motifs
(-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family
is ancient with members found in all eukaryotes, and in
most bacterial and archeal genomes. Dephosphorylation
of phosphoserines and phosphothreonines on target
proteins plays a central role in the regulation of many
cellular processes. PPPs belong to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 207
Score = 42.6 bits (101), Expect = 7e-05
Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 52 VCGDIHGQFYDL-KELFKVGGDVPETNYLF-MGDFVDRGFYSVETFLLLLALKVRYPDRI 109
V GDIHG + L K L VG D P + L +GD +DRG S+ LL P
Sbjct: 5 VVGDIHGHYSLLQKALDAVGFD-PARDRLISVGDLIDRGPESLACLELL-----LEP-WF 57
Query: 110 TLIRGNHE 117
+RGNHE
Sbjct: 58 HAVRGNHE 65
>gnl|CDD|163664 cd07421, MPP_Rhilphs, Rhilph phosphatases, metallophosphatase
domain. Rhilphs (Rhizobiales/ Rhodobacterales/
Rhodospirillaceae-like phosphatases) are a
phylogenetically distinct group of PPP (phosphoprotein
phosphatases), found only in land plants. They are named
for their close relationship to to PPP phosphatases from
alpha-Proteobacteria, including Rhizobiales,
Rhodobacterales and Rhodospirillaceae. The PPP
(phosphoprotein phosphatase) family, to which the
Rhilphs belong, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and
ApA4 hydrolase. The PPP catalytic domain is defined by
three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-).
The PPP enzyme family is ancient with members found in
all eukaryotes, and in most bacterial and archeal
genomes. Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 304
Score = 43.3 bits (102), Expect = 8e-05
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 50 VTVC-GDIHGQFYDLKELF-----KVGGDVPETNY-LFMGDFVDRGFYSVETFLLLLALK 102
V +C GDIHG L L+ +G + +F+GD+ DRG + + L++L
Sbjct: 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLP 62
Query: 103 VRYPD-RITLIRGNHE 117
++P R + GNH+
Sbjct: 63 EKHPKQRHVFLCGNHD 78
>gnl|CDD|163614 cd00838, MPP_superfamily, metallophosphatase superfamily,
metallophosphatase domain. Metallophosphatases (MPPs),
also known as metallophosphoesterases,
phosphodiesterases (PDEs), binuclear
metallophosphoesterases, and dimetal-containing
phosphoesterases (DMPs), represent a diverse superfamily
of enzymes with a conserved domain containing an active
site consisting of two metal ions (usually manganese,
iron, or zinc) coordinated with octahedral geometry by a
cage of histidine, aspartate, and asparagine residues.
This superfamily includes: the phosphoprotein
phosphatases (PPPs), Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 131
Score = 40.4 bits (94), Expect = 2e-04
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Query: 52 VCGDIHGQFYDLKELFKVGGDVPETNY---LFMGDFVDRGFYSVETFLLLLALKVRYPDR 108
V DIHG L+ + + L +GD V G E LAL +
Sbjct: 2 VISDIHGNLEALEAVLEAA-LAAAEKPDFVLVLGDLVGDGPDPEEVLAAALALLLLLGIP 60
Query: 109 ITLIRGNHE 117
+ ++ GNH+
Sbjct: 61 VYVVPGNHD 69
>gnl|CDD|163666 cd07423, MPP_PrpE, Bacillus subtilis PrpE and related proteins,
metallophosphatase domain. PrpE (protein phosphatase E)
is a bacterial member of the PPP (phosphoprotein
phosphatase) family of serine/threonine phosphatases and
a key signal transduction pathway component controlling
the expression of spore germination receptors GerA and
GerK in Bacillus subtilis. PrpE is closely related to
ApaH (also known symmetrical Ap(4)A hydrolase and
bis(5'nucleosyl)-tetraphosphatase). PrpE has
specificity for phosphotyrosine only, unlike the
serine/threonine phosphatases to which it is related.
The Bacilli members of this family are single domain
proteins while the other members have N- and C-terminal
domains in addition to this phosphatase domain. The PPP
(phosphoprotein phosphatase) family, to which PrpE
belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 234
Score = 37.6 bits (88), Expect = 0.004
Identities = 33/150 (22%), Positives = 61/150 (40%), Gaps = 32/150 (21%)
Query: 49 PVTVCGDIHGQFYDLKELF--------KVGGDVPETN--YLFMGDFVDRGFYSVETFLLL 98
P + GD+HG + +L+EL +VG +F+GD VDRG S E L+
Sbjct: 2 PFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLV 61
Query: 99 LAL----KVRYPDRITLIRGNHES--------RQITQVYGFYDECLRKYG--SITVWRYC 144
+++ + GNH++ R + +G +E + + S
Sbjct: 62 MSMVAAGAALC------VPGNHDNKLYRKLQGRNVKITHGL-EETVAQLEAESEEFKEEV 114
Query: 145 TEIFDYLSLSAIID-GRIFCVHGGLSPSIQ 173
E ++ L ++D G++ H G+ +
Sbjct: 115 IEFYESLPSHLVLDEGKLVVAHAGIKEEMI 144
>gnl|CDD|163665 cd07422, MPP_ApaH, Escherichia coli ApaH and related proteins,
metallophosphatase domain. ApaH (also known as
symmetrically cleaving Ap4A hydrolase and
bis(5'nucleosyl)-tetraphosphatase) is a bacterial member
of the PPP (phosphoprotein phosphatase) family of
serine/threonine phosphatases that hydrolyzes the
nucleotide-signaling molecule diadenosine tetraphosphate
(Ap(4)A) into two ADP and also hydrolyzes Ap(5)A,
Gp(4)G, and other extending compounds. Null mutations
in apaH result in high intracellular levels of Ap(4)A
which correlate with multiple phenotypes, including a
decreased expression of catabolite-repressible genes, a
reduction in the expression of flagellar operons, and an
increased sensitivity to UV and heat. Ap4A hydrolase
is important in responding to heat shock and oxidative
stress via regulating the concentration of Ap4A in
bacteria. Ap4A hydrolase is also thought to play a role
in siderophore production, but the mechanism by which
ApaH interacts with siderophore pathways in unknown.
The PPP (phosphoprotein phosphatase) family, to which
ApaH belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and PrpA/PrpB. The
PPP catalytic domain is defined by three conserved
motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme
family is ancient with members found in all eukaryotes,
and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 257
Score = 37.9 bits (89), Expect = 0.004
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 54 GDIHGQFYDLKELF-KVGGDVPETNYL-FMGDFVDRGFYSVETFLLLLALKVRYPDRITL 111
GDI G + +L+ L K+ D P + L +GD V+RG S+ET + +L D
Sbjct: 5 GDIQGCYDELQRLLEKINFD-PAKDRLWLVGDLVNRGPDSLETLRFVKSLG----DSAKT 59
Query: 112 IRGNHE 117
+ GNH+
Sbjct: 60 VLGNHD 65
>gnl|CDD|163641 cd07398, MPP_YbbF-LpxH, Escherichia coli YbbF/LpxH and related
proteins, metallophosphatase domain. YbbF/LpxH is an
Escherichia coli UDP-2,3-diacylglucosamine hydrolase
thought to catalyze the fourth step of lipid A
biosynthesis, in which a precursor
UDP-2,3-diacylglucosamine is hydrolyzed to yield
2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs
to the metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 217
Score = 35.5 bits (82), Expect = 0.017
Identities = 22/121 (18%), Positives = 33/121 (27%), Gaps = 22/121 (18%)
Query: 54 GDIHGQFYDLKELFKVGGDVPETNYLF-MGDFVD-------RGFYSVETFLLLLALKVRY 105
GD L + E + L+ +GD D + L L
Sbjct: 9 GDGGPAADFLLLFLLAALALGEADALYLLGDIFDLWFGDDEVVPPAAHEVLAALLRLADR 68
Query: 106 PDRITLIRGNHESRQITQVYGFYDECLRKYGSITVWRYCTEIFDYLSLSAIIDGRIFCVH 165
R+ + GNH D L + + + D L + RI H
Sbjct: 69 GTRVYYVPGNH------------DFLLGDFFAEE--LGLILLPDPLVHLELDGKRILLEH 114
Query: 166 G 166
G
Sbjct: 115 G 115
>gnl|CDD|236911 PRK11439, pphA, serine/threonine protein phosphatase 1;
Provisional.
Length = 218
Score = 35.5 bits (82), Expect = 0.019
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 11/79 (13%)
Query: 44 QRIDSP----VTVCGDIHGQFYDL-KELFKVGGDVPETNYLFMGDFVDRGFYSVETFLLL 98
QRI + + GDIHG F L ++L D + +GD +DRG S+ LL
Sbjct: 9 QRIAGHQWRHIWLVGDIHGCFEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSLRCLQLL 68
Query: 99 LALKVRYPDRITLIRGNHE 117
VR +RGNHE
Sbjct: 69 EEHWVR------AVRGNHE 81
>gnl|CDD|163656 cd07413, MPP_PA3087, Pseudomonas aeruginosa PA3087 and related
proteins, metallophosphatase domain. PA3087 is an
uncharacterized protein from Pseudomonas aeruginosa
with a metallophosphatase domain that belongs to the
phosphoprotein phosphatase (PPP) family. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and
ApA4 hydrolase. The PPP catalytic domain is defined by
three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-).
The PPP enzyme family is ancient with members found in
all eukaryotes, and in most bacterial and archeal
genomes. Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes.
PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and
acid sphingomyelinases (ASMases). The conserved domain
is a double beta-sheet sandwich with a di-metal active
site made up of residues located at the C-terminal side
of the sheets. This domain is thought to allow for
productive metal coordination.
Length = 222
Score = 35.3 bits (82), Expect = 0.020
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 8/43 (18%)
Query: 54 GDIHGQFYDLKEL-----FKVGGDV---PETNYLFMGDFVDRG 88
GDIHG L L ++ V PE +F+GD +DRG
Sbjct: 5 GDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRG 47
>gnl|CDD|107154 PHA02239, PHA02239, putative protein phosphatase.
Length = 235
Score = 35.0 bits (80), Expect = 0.029
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 9/111 (8%)
Query: 50 VTVCGDIHGQFYDLKELF-KVGGD-VPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPD 107
+ V DIHG++ L + K+ + PE +F+GD+VDRG S + + L +
Sbjct: 3 IYVVPDIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFDLMSNDDN 62
Query: 108 RITLIRGNHESRQITQVYGFYDECLRKYGSITVW--RYCTEIFDYLSLSAI 156
+TL+ GNH+ + Y + R W RYC E + +S +
Sbjct: 63 VVTLL-GNHDD----EFYNIMENVDRLSIYDIEWLSRYCIETLNSYGVSTV 108
>gnl|CDD|234457 TIGR04075, bacter_Pnkp, polynucleotide kinase-phosphatase. Members
of this protein family are the bacterial polynucleotide
kinase-phosphatase (Pnkp) whose genes occur paired with
genes for the 3' terminal RNA ribose
2'-O-methyltransferase Hen1. All members of the seed
alignment belong to a cassette with the Hen1. The pair
acts in bacterial RNA repair. This enzyme performs
end-healing reactions on broken RNA, preparing from the
RNA ligase to close the break. The working hypothesis is
that the combination of Pnkp (RNA repair) and Hen1 (RNA
modification) serves to first repair RNA damage from
ribotoxins and then perform a modification that prevents
the damage from recurring [Transcription, RNA
processing].
Length = 851
Score = 35.7 bits (83), Expect = 0.032
Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 25/101 (24%)
Query: 49 PVTVCGDIHGQFYDLKEL-----FKVGGDVPETNY----------LFMGDFVDRGFYSVE 93
P + GD+HG +L+ L +++ D +F+GD VDRG S
Sbjct: 181 PFDIIGDVHGCRDELETLLEELGYQIERDEGGRPVDVTHPEGRKAVFVGDLVDRGPDSPG 240
Query: 94 TFLLLLALKVRYPDRITLIRGNHE--------SRQITQVYG 126
L++ + V + + GNH+ R + +G
Sbjct: 241 VLRLVMGM-VAAGTALC-VPGNHDVKLLRALRGRNVKLTHG 279
>gnl|CDD|234673 PRK00166, apaH, diadenosine tetraphosphatase; Reviewed.
Length = 275
Score = 34.0 bits (79), Expect = 0.067
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 54 GDIHGQFYDLKELF-KVGGDVPETNYL-FMGDFVDRGFYSVETFLLLLALKVRYPDRITL 111
GDI G + +L+ L K+ D P + L +GD V+RG S+E + +L D
Sbjct: 7 GDIQGCYDELQRLLEKIDFD-PAKDTLWLVGDLVNRGPDSLEVLRFVKSLG----DSAVT 61
Query: 112 IRGNHE 117
+ GNH+
Sbjct: 62 VLGNHD 67
>gnl|CDD|182173 PRK09968, PRK09968, serine/threonine-specific protein phosphatase
2; Provisional.
Length = 218
Score = 33.3 bits (76), Expect = 0.095
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 52 VCGDIHGQFYDLKELFKVGGDVPETNYLF-MGDFVDRGFYSVETFLLLLALKVRYPDRIT 110
V GDIHG++ L+ PET+ L +GD +DRG S+ LL
Sbjct: 19 VVGDIHGEYQLLQSRLHQLSFCPETDLLISVGDNIDRGPESLNVLRLL------NQPWFI 72
Query: 111 LIRGNHES 118
++GNHE+
Sbjct: 73 SVKGNHEA 80
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 33.8 bits (78), Expect = 0.13
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 145 TEIFDYLSLSAIIDGRIFCVHGGLSPSIQTLDQIRTIDRKQEVPHD 190
TEI+DYL L G +C G S QT QI +D+ +P
Sbjct: 100 TEIYDYLRLLFARVGTPYCPTCGRPISRQTPSQI--VDQILALPEG 143
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 31.2 bits (72), Expect = 0.72
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 145 TEIFDYLS-LSAIIDGRIFCVHGGLSPSIQTLDQIRTIDRKQEVP 188
TEI+DYL L A + G+ C + G QT+ Q+ +DR E+P
Sbjct: 104 TEIYDYLRLLYARV-GKPHCPNCGRPIEAQTVSQM--VDRVLELP 145
>gnl|CDD|184187 PRK13625, PRK13625, bis(5'-nucleosyl)-tetraphosphatase PrpE;
Provisional.
Length = 245
Score = 30.8 bits (70), Expect = 0.80
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 19/78 (24%)
Query: 52 VCGDIHGQFYDLKELFKVGGDV--------PETNYL-FMGDFVDRGFYSVETFLLLLAL- 101
+ GDIHG + + + L + G P+ L F+GD DRG +S+ ++ L
Sbjct: 5 IIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELV 64
Query: 102 ---KVRYPDRITLIRGNH 116
Y + GNH
Sbjct: 65 EKKAAYY------VPGNH 76
>gnl|CDD|213641 TIGR01641, phageSPP1_gp7, phage putative head morphogenesis
protein, SPP1 gp7 family. This model describes a region
of about 110 amino acids found exclusively in
phage-related proteins, internally or toward the
C-terminus. One member, gp7 of phage SPP1, appears
involved in head morphogenesis [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 108
Score = 28.5 bits (64), Expect = 1.6
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 128 YDECLRKYGSITVWRYCTEIFDYLSLSAIIDGRIFCVHGGL 168
E R Y + RY + AIID R + L
Sbjct: 38 RTETARIYNQTKLERY-KKAGPIYEYIAIIDSRTRPICRAL 77
>gnl|CDD|163634 cd07391, MPP_PF1019, Pyrococcus furiosus PF1019 and related
proteins, metallophosphatase domain. This family
includes bacterial and archeal proteins homologous to
PF1019, an uncharacterized Pyrococcus furiosus protein.
The domain present in members of this family belongs to
the metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 172
Score = 28.8 bits (65), Expect = 2.6
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 82 GDFVDRGFYSV---ETFLLLLALKVRYPDRITLIRGNH 116
GD F + E + + + LIRGNH
Sbjct: 49 GDLKHS-FGGLSRQEFEEVAFLRLLAKDVDVILIRGNH 85
>gnl|CDD|227093 COG4750, LicC, CTP:phosphocholine cytidylyltransferase involved
in choline phosphorylation for cell surface LPS
epitopes [Cell envelope biogenesis, outer membrane].
Length = 231
Score = 28.9 bits (65), Expect = 2.8
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 17 RCDPIKESEVKALCAKAREILVEESNVQ----RIDSPVTVCGDIHGQFYDLKELFKV 69
R P+ +S K+L E L+E Q ID V G + QF LK+ + V
Sbjct: 13 RFVPLTQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGYLKEQFEYLKDKYDV 69
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic
compound extrusion (MATE)-like proteins similar to
Bacillus subtilis yoeA. The integral membrane proteins
from the MATE family are involved in exporting
metabolites across the cell membrane and are responsible
for multidrug resistance (MDR) in many bacteria and
animals. A number of family members are involved in the
synthesis of peptidoglycan components in bacteria.
Length = 431
Score = 29.0 bits (66), Expect = 4.0
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 218 FGSDVVASFNAANNIDMIC 236
+G A++ AN I+
Sbjct: 255 YGVVASAAYGIANKINSFA 273
>gnl|CDD|223107 COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes
[acetolactate synthase, pyruvate dehydrogenase
(cytochrome), glyoxylate carboligase, phosphonopyruvate
decarboxylase] [Amino acid transport and metabolism /
Coenzyme metabolism].
Length = 550
Score = 28.8 bits (65), Expect = 4.2
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 73 VPETNYLFMGDFVDRGFYSVETFL----LLLALKVRYPDRITLIRGNHESRQITQV 124
VPE + L +G G + L LLLA+ R+ DR+T G I +
Sbjct: 241 VPEDHPLSLGMLGMHGTKAANEALEEADLLLAVGARFDDRVTGYSGFAPPAAIIHI 296
>gnl|CDD|201832 pfam01507, PAPS_reduct, Phosphoadenosine phosphosulfate reductase
family. This domain is found in phosphoadenosine
phosphosulfate (PAPS) reductase enzymes or PAPS
sulfotransferase. PAPS reductase is part of the adenine
nucleotide alpha hydrolases superfamily also including N
type ATP PPases and ATP sulphurylases. The enzyme uses
thioredoxin as an electron donor for the reduction of
PAPS to phospho-adenosine-phosphate (PAP). It is also
found in NodP nodulation protein P from Rhizobium which
has ATP sulfurylase activity (sulfate adenylate
transferase).
Length = 173
Score = 28.0 bits (63), Expect = 4.2
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 96 LLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYG 136
LL LA K P + I +E + Y F DE KYG
Sbjct: 15 LLHLASKAFPPGPVIFIDTGYEFP---ETYEFVDELEEKYG 52
>gnl|CDD|227050 COG4706, COG4706, Predicted 3-hydroxylacyl-(acyl carrier protein)
dehydratase [Lipid metabolism].
Length = 161
Score = 27.9 bits (62), Expect = 4.7
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 187 VPHDGPMCDL----LWSDPEDTQGWGVSPRGAGYL 217
+PH GPM L W D VSP GA +L
Sbjct: 16 LPHSGPMLLLDDVVTWDDDSARCRATVSPSGAPFL 50
>gnl|CDD|215261 PLN02470, PLN02470, acetolactate synthase.
Length = 585
Score = 28.2 bits (63), Expect = 7.5
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 90 YSVETFLLLLALKVRYPDRIT 110
Y+V++ LLLA VR+ DR+T
Sbjct: 275 YAVDSADLLLAFGVRFDDRVT 295
>gnl|CDD|149159 pfam07925, RdRP_5, Reovirus RNA-dependent RNA polymerase lambda 3.
The sequences in this family are similar to the reoviral
minor core protein lambda 3, which functions as a
RNA-dependent RNA polymerase within the protein capsid.
It is organised into 3 domains. N- and C-terminal
domains create a 'cage' that encloses a conserved
central catalytic domain within a hollow centre; this
catalytic domain is arranged to form 'fingers', 'palm'
and 'thumb' subdomains. Unlike other RNA polymerases,
like HIV reverse transcriptase and T7 RNA polymerase,
lambda 3 protein binds template and substrate with only
localised rearrangements, and catalytic activity can
occur with little structural change. However, the
structure of the catalytic complex is similar to that of
other polymerase catalytic complexes with known
structure.
Length = 1271
Score = 28.0 bits (62), Expect = 8.2
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 107 DRITLIRGNHESRQITQVYGFYDECLRKYGSITVWRY---CTEIFDYLSLSAIIDGRI 161
D + +I GN + ++ E L KYG W+Y ++ +YL L A+ RI
Sbjct: 738 DGLLIIPGNTAGKISSEDIQELLELLSKYGEEFGWKYDIDYSDTAEYLKLYALFGCRI 795
>gnl|CDD|226649 COG4186, COG4186, Predicted phosphoesterase or phosphohydrolase
[General function prediction only].
Length = 186
Score = 27.2 bits (60), Expect = 9.0
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 74 PETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYD 129
P+ +GD G L+L R R L+ GNH+ + ++D
Sbjct: 45 PDDVLWHLGDLS-SGANRERAAGLILE---RLNGRKHLVPGNHDKCHPMYRHAYFD 96
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.140 0.439
Gapped
Lambda K H
0.267 0.0780 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,096,760
Number of extensions: 1537647
Number of successful extensions: 1430
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1376
Number of HSP's successfully gapped: 49
Length of query: 308
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 211
Effective length of database: 6,635,264
Effective search space: 1400040704
Effective search space used: 1400040704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.4 bits)