RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13699
(308 letters)
>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic
subunit alpha isoform; protein-protein complex, heat
repeat, signaling protein; HET: OKA; 2.60A {Homo
sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C*
3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C*
2nyl_C*
Length = 309
Score = 613 bits (1582), Expect = 0.0
Identities = 196/304 (64%), Positives = 245/304 (80%), Gaps = 1/304 (0%)
Query: 5 IQDLDRQIEQLKRCDPIKESEVKALCAKAREILVEESNVQRIDSPVTVCGDIHGQFYDLK 64
++LD+ IEQL C + ES+VK+LC KA+EIL +ESNVQ + PVTVCGD+HGQF+DL
Sbjct: 7 TKELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLM 66
Query: 65 ELFKVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQV 124
ELF++GG P+TNYLFMGD+VDRG+YSVET LL+ALKVRY +RIT++RGNHESRQITQV
Sbjct: 67 ELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQV 126
Query: 125 YGFYDECLRKYGSITVWRYCTEIFDYLSLSAIIDGRIFCVHGGLSPSIQTLDQIRTIDRK 184
YGFYDECLRKYG+ VW+Y T++FDYL L+A++DG+IFC+HGGLSPSI TLD IR +DR
Sbjct: 127 YGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRL 186
Query: 185 QEVPHDGPMCDLLWSDPEDTQGWGVSPRGAGYLFGSDVVASFNAANNIDMICRAHQLVME 244
QEVPH+GPMCDLLWSDP+D GWG+SPRGAGY FG D+ +FN AN + ++ RAHQLVME
Sbjct: 187 QEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVME 246
Query: 245 GYKWHFNETVLTVWSAPNYCYRCGNVAAILELNENLQREFTIFEAAPQESRGIPSKKPQA 304
GY W + V+T++SAPNYCYRCGN AAI+EL++ L+ F F+ AP+ +
Sbjct: 247 GYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHV-TRRTP 305
Query: 305 DYFL 308
DYFL
Sbjct: 306 DYFL 309
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors,
drug design, cytoplasm, hydrolase, iron, manganese,
metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens}
PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A*
3h68_A* 3h69_A* 1s95_A
Length = 315
Score = 569 bits (1468), Expect = 0.0
Identities = 122/307 (39%), Positives = 175/307 (57%), Gaps = 13/307 (4%)
Query: 5 IQDLDRQIEQLKRCDPIKESEVKALCAKAREILVEESNVQRI----DSPVTVCGDIHGQF 60
I + ++ K + + + +E+L + S + +TVCGD HGQF
Sbjct: 13 ISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHGQF 72
Query: 61 YDLKELFKVGGDVPETN-YLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESR 119
YDL +F++ G ETN Y+F GDFVDRG +SVE L L K+ YPD L+RGNHE+
Sbjct: 73 YDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETD 132
Query: 120 QITQVYGFYDECLRKYGSITVWRYCTEIFDYLSLSAIIDGRIFCVHGGL-SPSIQTLDQI 178
+ Q+YGF E KY + ++ +E+F++L L+ I+G++ +HGGL S TLD I
Sbjct: 133 NMNQIYGFEGEVKAKY-TAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSEDGVTLDDI 191
Query: 179 RTIDRKQEVPHDGPMCDLLWSDPEDTQGWGVSPRGAGYLFGSDVVASFNAANNIDMICRA 238
R I+R ++ P GPMCDLLWSDP+ G +S RG FG DV +F NN+D I R+
Sbjct: 192 RKIERNRQPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFLEENNLDYIIRS 251
Query: 239 HQLVMEGYKWHFNETVLTVWSAPNYCYRCGNVAAILEL-NENLQREFTIFEAAPQESRGI 297
H++ EGY+ +TV+SAPNYC + GN A+ + L +L+ +F F A P
Sbjct: 252 HEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFTAVPH----- 306
Query: 298 PSKKPQA 304
P+ KP A
Sbjct: 307 PNVKPMA 313
>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase,
toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN;
2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3
Length = 330
Score = 568 bits (1465), Expect = 0.0
Identities = 136/304 (44%), Positives = 202/304 (66%), Gaps = 10/304 (3%)
Query: 7 DLDRQIEQLKRCD--------PIKESEVKALCAKAREILVEESNVQRIDSPVTVCGDIHG 58
+LD I +L + E+E++ LC K+REI + + + +++P+ +CGDIHG
Sbjct: 8 NLDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHG 67
Query: 59 QFYDLKELFKVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHES 118
Q+YDL LF+ GG PE+NYLF+GD+VDRG S+ET LLLA K++YP+ L+RGNHE
Sbjct: 68 QYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHEC 127
Query: 119 RQITQVYGFYDECLRKYGSITVWRYCTEIFDYLSLSAIIDGRIFCVHGGLSPSIQTLDQI 178
I ++YGFYDEC R+Y +I +W+ T+ F+ L ++AI+D +IFC HGGLSP +Q+++QI
Sbjct: 128 ASINRIYGFYDECKRRY-NIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSMEQI 186
Query: 179 RTIDRKQEVPHDGPMCDLLWSDPE-DTQGWGVSPRGAGYLFGSDVVASFNAANNIDMICR 237
R I R +VP G +CDLLWSDP+ D QGWG + RG + FG++VVA F +++D+ICR
Sbjct: 187 RRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICR 246
Query: 238 AHQLVMEGYKWHFNETVLTVWSAPNYCYRCGNVAAILELNENLQREFTIFEAAPQESRGI 297
AHQ+V +GY++ ++T++SAPNYC N A++ ++E L F I + A +
Sbjct: 247 AHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADKNKGKY 306
Query: 298 PSKK 301
Sbjct: 307 GQFS 310
>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform;
protein-peptide docking, protein targeting, AKA
beta-augmentation, calmodulin-binding, membrane,
hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A*
1tco_A* 1mf8_A* 2jog_A
Length = 357
Score = 567 bits (1463), Expect = 0.0
Identities = 128/316 (40%), Positives = 177/316 (56%), Gaps = 22/316 (6%)
Query: 7 DLDRQIEQLKRCDPIKESEVKALCAKAREILVEESNVQRIDSPVTVCGDIHGQFYDLKEL 66
+D L + ++ES + + IL +E N+ ID+PVTVCGDIHGQF+DL +L
Sbjct: 29 RVDILKAHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAPVTVCGDIHGQFFDLMKL 88
Query: 67 FKVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYG 126
F+VGG T YLF+GD+VDRG++S+E L L ALK+ YP + L+RGNHE R +T+ +
Sbjct: 89 FEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFT 148
Query: 127 FYDECLRKYGSITVWRYCTEIFDYLSLSAIIDGRIFCVHGGLSPSIQTLDQIRTIDRKQE 186
F EC KY S V+ C + FD L L+A+++ + CVHGGLSP I TLD IR +DR +E
Sbjct: 149 FKQECKIKY-SERVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINTLDDIRKLDRFKE 207
Query: 187 VPHDGPMCDLLWSDPEDTQGWG--------VSPRGAGYLFGSDVVASFNAANNIDMICRA 238
P GPMCD+LWSDP + G + RG Y + V F NN+ I RA
Sbjct: 208 PPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLSILRA 267
Query: 239 HQLVMEGYKWHFNE------TVLTVWSAPNYCYRCGNVAAILELNENLQREFTIFEAAPQ 292
H+ GY+ + +++T++SAPNY N AA+L+ N+ F +P
Sbjct: 268 HEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNV-MNIRQFNCSPH 326
Query: 293 ESRGIPSKKPQ-ADYF 307
P P D F
Sbjct: 327 -----PYWLPNFMDVF 337
>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit;
carbohydrate metabolism, cell cycle, cell division; HET:
1ZN; 1.63A {Homo sapiens} PDB: 3e7b_A* 3egg_A* 3egh_A*
3hvq_A 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A
2o8a_A 1u32_A* 1s70_A*
Length = 299
Score = 559 bits (1443), Expect = 0.0
Identities = 136/293 (46%), Positives = 201/293 (68%), Gaps = 10/293 (3%)
Query: 7 DLDRQIEQLKRCD--------PIKESEVKALCAKAREILVEESNVQRIDSPVTVCGDIHG 58
+LD I +L + E+E++ LC K+REI + + + +++P+ +CGDIHG
Sbjct: 7 NLDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHG 66
Query: 59 QFYDLKELFKVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHES 118
Q+YDL LF+ GG PE+NYLF+GD+VDRG S+ET LLLA K++YP+ L+RGNHE
Sbjct: 67 QYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHEC 126
Query: 119 RQITQVYGFYDECLRKYGSITVWRYCTEIFDYLSLSAIIDGRIFCVHGGLSPSIQTLDQI 178
I ++YGFYDEC R+Y +I +W+ T+ F+ L ++AI+D +IFC HGGLSP +Q+++QI
Sbjct: 127 ASINRIYGFYDECKRRY-NIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSMEQI 185
Query: 179 RTIDRKQEVPHDGPMCDLLWSDPE-DTQGWGVSPRGAGYLFGSDVVASFNAANNIDMICR 237
R I R +VP G +CDLLWSDP+ D QGWG + RG + FG++VVA F +++D+ICR
Sbjct: 186 RRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICR 245
Query: 238 AHQLVMEGYKWHFNETVLTVWSAPNYCYRCGNVAAILELNENLQREFTIFEAA 290
AHQ+V +GY++ ++T++SAPNYC N A++ ++E L F I + A
Sbjct: 246 AHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPA 298
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 563 bits (1454), Expect = 0.0
Identities = 122/307 (39%), Positives = 175/307 (57%), Gaps = 13/307 (4%)
Query: 5 IQDLDRQIEQLKRCDPIKESEVKALCAKAREILVEESNVQRID----SPVTVCGDIHGQF 60
I + ++ K + + + +E+L + S + +TVCGD HGQF
Sbjct: 166 ISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHGQF 225
Query: 61 YDLKELFKVGGDVPETN-YLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESR 119
YDL +F++ G ETN Y+F GDFVDRG +SVE L L K+ YPD L+RGNHE+
Sbjct: 226 YDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETD 285
Query: 120 QITQVYGFYDECLRKYGSITVWRYCTEIFDYLSLSAIIDGRIFCVHGGL-SPSIQTLDQI 178
+ Q+YGF E KY + ++ +E+F++L L+ I+G++ +HGGL S TLD I
Sbjct: 286 NMNQIYGFEGEVKAKY-TAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSEDGVTLDDI 344
Query: 179 RTIDRKQEVPHDGPMCDLLWSDPEDTQGWGVSPRGAGYLFGSDVVASFNAANNIDMICRA 238
R I+R ++ P GPMCDLLWSDP+ G +S RG FG DV +F NN+D I R+
Sbjct: 345 RKIERNRQPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFLEENNLDYIIRS 404
Query: 239 HQLVMEGYKWHFNETVLTVWSAPNYCYRCGNVAAILEL-NENLQREFTIFEAAPQESRGI 297
H++ EGY+ +TV+SAPNYC + GN A+ + L +L+ +F F A P
Sbjct: 405 HEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFTAVPH----- 459
Query: 298 PSKKPQA 304
P+ KP A
Sbjct: 460 PNVKPMA 466
>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase,
immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
Length = 521
Score = 558 bits (1440), Expect = 0.0
Identities = 128/316 (40%), Positives = 177/316 (56%), Gaps = 22/316 (6%)
Query: 7 DLDRQIEQLKRCDPIKESEVKALCAKAREILVEESNVQRIDSPVTVCGDIHGQFYDLKEL 66
+D L + ++ES + + IL +E N+ ID+PVTVCGDIHGQF+DL +L
Sbjct: 42 RVDILKAHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAPVTVCGDIHGQFFDLMKL 101
Query: 67 FKVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYG 126
F+VGG T YLF+GD+VDRG++S+E L L ALK+ YP + L+RGNHE R +T+ +
Sbjct: 102 FEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFT 161
Query: 127 FYDECLRKYGSITVWRYCTEIFDYLSLSAIIDGRIFCVHGGLSPSIQTLDQIRTIDRKQE 186
F EC KY S V+ C + FD L L+A+++ + CVHGGLSP I TLD IR +DR +E
Sbjct: 162 FKQECKIKY-SERVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINTLDDIRKLDRFKE 220
Query: 187 VPHDGPMCDLLWSDPEDTQGWG--------VSPRGAGYLFGSDVVASFNAANNIDMICRA 238
P GPMCD+LWSDP + G + RG Y + V F NN+ I RA
Sbjct: 221 PPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLSILRA 280
Query: 239 HQLVMEGYKWHFNE------TVLTVWSAPNYCYRCGNVAAILELNENLQREFTIFEAAPQ 292
H+ GY+ + +++T++SAPNY N AA+L+ N+ F +P
Sbjct: 281 HEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNV-MNIRQFNCSPH 339
Query: 293 ESRGIPSKKPQ-ADYF 307
P P D F
Sbjct: 340 -----PYWLPNFMDVF 350
>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein,
structural genomics, PSI-2, protein structu initiative;
2.30A {Saccharomyces cerevisiae}
Length = 335
Score = 550 bits (1420), Expect = 0.0
Identities = 110/319 (34%), Positives = 166/319 (52%), Gaps = 26/319 (8%)
Query: 6 QDLDRQIEQ-LKRCDPIKESEVKALCAKAREILVEESNVQRI------DSPVTVCGDIHG 58
+ + + + + + + V A+ + A + +E ++ + D ++VCGD HG
Sbjct: 15 EFISKMVNDLFLKGKYLPKKYVAAIISHADTLFRQEPSMVELENNSTPDVKISVCGDTHG 74
Query: 59 QFYDLKELFKVGGDV-PETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHE 117
QFYD+ LF+ G V P+ YLF GDFVDRG +S E LL LK+ +P+ L RGNHE
Sbjct: 75 QFYDVLNLFRKFGKVGPKHTYLFNGDFVDRGSWSCEVALLFYCLKILHPNNFFLNRGNHE 134
Query: 118 SRQITQVYGFYDECLRKYGSITVWRYCTEIFDYLSLSAIIDGRIFCVHGGL-SPSIQTLD 176
S + ++YGF DEC KY S ++ + F+ L L+ +I+ +HGGL S TL
Sbjct: 135 SDNMNKIYGFEDECKYKY-SQRIFNMFAQSFESLPLATLINNDYLVMHGGLPSDPSATLS 193
Query: 177 QIRTIDRKQEVPHDGPMCDLLWSDPEDTQGWGVSPRGAGYLFGSDVVASFNAANNIDMIC 236
+ IDR + P DG +LLW+DP++ G G S RG G+ FG D+ F N + I
Sbjct: 194 DFKNIDRFAQPPRDGAFMELLWADPQEANGMGPSQRGLGHAFGPDITDRFLRNNKLRKIF 253
Query: 237 RAHQLVMEGYKWHFNETVLTVWSAPNYCYRCGNVAAILEL-----------NENLQREFT 285
R+H+L M G ++ ++TV+SAPNYC GN+ ++ + N++
Sbjct: 254 RSHELRMGGVQFEQKGKLMTVFSAPNYCDSQGNLGGVIHVVPGHGILQAGRNDDQNLIIE 313
Query: 286 IFEAAPQESRGIPSKKPQA 304
FEA P KP A
Sbjct: 314 TFEAVEH-----PDIKPMA 327
>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle,
hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A
Length = 342
Score = 99.5 bits (247), Expect = 3e-24
Identities = 47/238 (19%), Positives = 78/238 (32%), Gaps = 33/238 (13%)
Query: 48 SPVTVCGDIHGQFYDLKELFKVGGDVPE--------TNYLFMGDFVDRGFYSVETFLLLL 99
V D+HGQ+ L L K + + + GD DRG E +
Sbjct: 71 KKVVALSDVHGQYDVLLTLLKKQKIIDSDGNWAFGEGHMVMTGDIFDRGHQVNEVLWFMY 130
Query: 100 ALKVRYPD---RITLIRGNHESRQITQVYGFYDEC------LRKYGSITVWRYCTEIFDY 150
L + D + L+ GNHE + + + L ++ TEI +
Sbjct: 131 QLDQQARDAGGMVHLLMGNHEQMVLGGDLRYVHQRYDIATTLINRPYNKLYSADTEIGQW 190
Query: 151 LSL--SAIIDGRIFCVHGGLSPS----IQTLDQIRTIDRKQEVPHDGPMCDLLWSDPEDT 204
L + I + +HGG+S TLD+ + R + L +D
Sbjct: 191 LRSKNTIIKINDVLYMHGGISSEWISRELTLDKANALYR----ANVDASKKSLKADDLLN 246
Query: 205 QGWGVSP----RGAG-YLFGSDVVASFNAANNIDMICRAHQLVMEGYKWHFNETVLTV 257
+ + RG F + + N++ I H E F+ V+ V
Sbjct: 247 FLFFGNGPTWYRGYFSETFTEAELDTILQHFNVNHIVVGHT-SQERVLGLFHNKVIAV 303
>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine
tetraphosphatase, monomer, PSI- 2, protein structure
initiative, nysgrc; 2.05A {Trypanosoma brucei}
Length = 262
Score = 60.1 bits (146), Expect = 9e-11
Identities = 42/208 (20%), Positives = 65/208 (31%), Gaps = 37/208 (17%)
Query: 54 GDIHGQFYDLKELF-KVGGDVPETNYL-FMGDFVDRGFYSVETFLLLLALKVRYPDRITL 111
GDIHG L++L V ++ L +GD V++G S LL L
Sbjct: 25 GDIHGCRAQLEDLLRAVSFK-QGSDTLVAVGDLVNKGPDSFGVVRLLKRLGAYS------ 77
Query: 112 IRGNHE----------SRQITQVYGFYDECLRKYGSITVWRYCTEIFDYL-SLSAII--- 157
+ GNH+ ++ L T++ YL L II
Sbjct: 78 VLGNHDAKLLKLVKKLGKKECLKGRDAKSSLAPLAQ----SIPTDVETYLSQLPHIIRIP 133
Query: 158 DGRIFCVHGGLSPSIQTLDQ--------IRTIDRKQEVPHDGPMCDLLWSDPEDTQGWGV 209
+ H GL P +D+ +R + K++ G + + W
Sbjct: 134 AHNVMVAHAGLHPQR-PVDRQYEDEVTTMRNLIEKEQEATGGVTLTATEETNDGGKPWAS 192
Query: 210 SPRGAGYL-FGSDVVASFNAANNIDMIC 236
RG + FG D I
Sbjct: 193 MWRGPETVVFGHDARRGLQEQYKPLAIG 220
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr
protein phosphatase, ppase, manganese, sulfate, viral
protein; 2.15A {Enterobacteria phage lambda} SCOP:
d.159.1.3
Length = 221
Score = 58.3 bits (141), Expect = 2e-10
Identities = 40/215 (18%), Positives = 63/215 (29%), Gaps = 41/215 (19%)
Query: 41 SNVQRIDSP----VTVCGDIHGQFYDLKELF-KVGGDVPETNYLFMGDFVDRGFYSVETF 95
++ID + V GD+HG + +L +G D + + +GD VDRG +VE
Sbjct: 2 RYYEKIDGSKYRNIWVVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECL 61
Query: 96 LLLLALKVRYPDRITLIRGNHESRQITQVYG--FYDECLRKYGSITVWRYCT------EI 147
L+ R +RGNHE I + + L G +
Sbjct: 62 ELITFPWFRA------VRGNHEQMMIDGLSERGNVNHWLLNGGGWFFNLDYDKEILAKAL 115
Query: 148 FDYL-SLSAII-----DGRIFCVHGGLSPSIQTLDQIRTIDRKQEVPHDGPMCDLLWSDP 201
L II D + H + ++W+
Sbjct: 116 AHKADELPLIIELVSKDKKYVICHADYPFDEYEFGKPVDHQ------------QVIWNRE 163
Query: 202 ---EDTQGWGVSPRGAGY-LFGSDVVASFNAANNI 232
G +GA +FG N
Sbjct: 164 RISNSQNGIVKEIKGADTFIFGHTPAVKPLKFANQ 198
>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture,
hydrolase; 2.72A {Shigella flexneri 2A}
Length = 280
Score = 55.2 bits (132), Expect = 5e-09
Identities = 30/158 (18%), Positives = 50/158 (31%), Gaps = 10/158 (6%)
Query: 54 GDIHGQFYDLKELF-KVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLI 112
GD+HG + +L L KV + GD V RG S++ + +L D + L+
Sbjct: 7 GDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSLG----DSVRLV 62
Query: 113 RGNHESRQITQVYGFY----DECLRKYGSITVWRYCTEIFDYLSLSAIID-GRIFCVHGG 167
GNH+ + G + L L I + ++ H G
Sbjct: 63 LGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWLRRQPLLQIDEEKKLVMAHAG 122
Query: 168 LSPSIQTLDQIRTIDRKQEVPHDGPMCDLLWSDPEDTQ 205
++P + V L + D
Sbjct: 123 ITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMP 160
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural
genomics, MCSG, Zn binding, hydrolase; 1.95A
{Sphaerobacter thermophilus}
Length = 246
Score = 45.1 bits (106), Expect = 1e-05
Identities = 32/147 (21%), Positives = 48/147 (32%), Gaps = 12/147 (8%)
Query: 52 VCGDIHGQFYDLKELFKVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITL 111
+ D+H L+ + G V + +GD V G E L+ L I+
Sbjct: 8 IISDVHANLVALEAVLSDAGRV--DDIWSLGDIVGYGPRPRECVELVRVL----APNIS- 60
Query: 112 IRGNHESRQITQVYGF--YDECLRKYGSITVWRYCTEIFDYLS--LSAIIDGRIFCVHGG 167
+ GNH+ ++ R T + E YL + +IDG VHG
Sbjct: 61 VIGNHD-WACIGRLSLDEFNPVARFASYWTTMQLQAEHLQYLESLPNRMIDGDWTVVHGS 119
Query: 168 LSPSIQTLDQIRTIDRKQEVPHDGPMC 194
I I D P+C
Sbjct: 120 PRHPIWEYIYNARIAALNFPAFDTPLC 146
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric
AP4A hydrolase, phosphodiesterase, binding, Mn2+
binding, hydrolase; 1.90A {Streptococcus pneumoniae}
PDB: 3qfn_A 3qfo_A*
Length = 270
Score = 39.7 bits (92), Expect = 6e-04
Identities = 19/134 (14%), Positives = 34/134 (25%), Gaps = 25/134 (18%)
Query: 50 VTVCGDIHGQFYDLKELFKVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRI 109
+ + DIHG L+ + + Y +GD + G LL L
Sbjct: 14 IALLSDIHGNTTALEAVLADARQLGVDEYWLLGDILMPGTGRRRILDLLDQL-----PIT 68
Query: 110 TLIRGNHESRQITQVYGFYDECLRKYGSITVWRYCTEIFDYLSLSA-------------- 155
+ GN E ++ + L + + +S
Sbjct: 69 ARVLGNWED----SLWHGVRKELDSTRPSQRYLLRQCQYVLEEISLEEIEVLHNQPLQIH 124
Query: 156 --IIDGRIFCVHGG 167
D + H
Sbjct: 125 RQFGDLTVGISHHL 138
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP:
d.159.1.5 PDB: 2gju_A
Length = 252
Score = 39.4 bits (91), Expect = 8e-04
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 7/69 (10%)
Query: 54 GDIHGQFYDLKELFK-----VGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDR 108
+I G L Y +G+ V Y E ++ L + +
Sbjct: 8 ANIAGNLPALTAALSRIEEMREEGYEIEKYYILGNIVGLFPYPKEVIEVIKDLTKK--EN 65
Query: 109 ITLIRGNHE 117
+ +IRG ++
Sbjct: 66 VKIIRGKYD 74
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.004
Identities = 60/339 (17%), Positives = 98/339 (28%), Gaps = 118/339 (34%)
Query: 3 EYIQDLDRQIEQLKRCDPIKESEVKALCAKAREILVEESNVQRIDSPVTVCGDIHGQFYD 62
+Y ++L R + Q V L + E L E + Q +
Sbjct: 168 DYFEEL-RDLYQ------TYHVLVGDLIKFSAETLSELI------RTTLDAEKVFTQGLN 214
Query: 63 LKELFKVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQIT 122
+ E + + P+ +YL S + ++ L Y +T
Sbjct: 215 ILEWLENPSNTPDKDYL------LSIPISC-PLIGVIQL-AHY--VVTA----------- 253
Query: 123 QVYGFYDECLRKY--GSITV---------------WRYCTEIFDYLSLSAI-----IDGR 160
++ GF LR Y G+ W E F AI I R
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW----ESFFVSVRKAITVLFFIGVR 309
Query: 161 IFCVHGGLSPSIQTLDQIRTIDRKQEVPHDGPMCDLLWSDPEDTQGWGVSPRGA---GYL 217
+ + S L+ +++ + VP PM L S+ Q V +L
Sbjct: 310 CYEAYPNTSLPPSILED--SLENNEGVP--SPM--LSISNLTQEQ---VQDYVNKTNSHL 360
Query: 218 FGSDVV--ASFNAANNIDMICRAHQLVMEGYKWHFNETVLTVWSAPNYCYRCGNVAAILE 275
V + N A N+ V++ G ++
Sbjct: 361 PAGKQVEISLVNGAKNL---------------------VVS-----------GPPQSLYG 388
Query: 276 LNENLQREFTIFEAAPQE---SRGIP--SKKPQADY-FL 308
LN L++ AP SR IP +K + FL
Sbjct: 389 LNLTLRK-----AKAPSGLDQSR-IPFSERKLKFSNRFL 421
Score = 32.3 bits (73), Expect = 0.25
Identities = 47/337 (13%), Positives = 95/337 (28%), Gaps = 99/337 (29%)
Query: 46 IDSPVTVCGDIHGQFYDLKELFK----------VGGDVPETN------YL-FMGDFVDRG 88
++ + V L+E F D P T +L ++ V+
Sbjct: 16 LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPS 75
Query: 89 FYSVETFLLLLALKVRYPDRITLIRGN--H-------ESRQITQVYGFYDECLRKY--GS 137
V F +L L + + + GN H + T V E ++ Y
Sbjct: 76 --KVGQFDQVLNLCLTEFEN-CYLEGNDIHALAAKLLQENDTTLVKTK--ELIKNYITAR 130
Query: 138 ITVWRYCTEIFDYLSLSAIIDG--RIFCVHGGLSPSIQTLDQIRTI-------------- 181
I R + + A+ +G ++ + GG + +++R +
Sbjct: 131 IMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKF 190
Query: 182 --DRKQEVPHDGPMCDLLWSDPEDTQGWGVSPR---GAGYLFGSDVVASFN-----AANN 231
+ E+ + +++ + W +P YL + S +
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI--SCPLIGVIQLAH 248
Query: 232 IDMICRAHQLVMEGYKWHFNETVLTVWSAPNYCYRCGNVAAIL--------ELNENLQRE 283
+ + + + T S G V A+ ++++
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGA--TGHSQ-------GLVTAVAIAETDSWESFFVSVRKA 299
Query: 284 FTI-F-------EAAPQES-------------RGIPS 299
T+ F EA P S G+PS
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS 336
Score = 28.5 bits (63), Expect = 3.5
Identities = 43/279 (15%), Positives = 69/279 (24%), Gaps = 125/279 (44%)
Query: 81 MG--------------DFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYG 126
MG + D F F +L + P +T+ G + ++I + Y
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVI-NNPVNLTIHFGGEKGKRIRENYS 1689
Query: 127 FY-------------------DECLRKY---GS-------------ITVWRYCTEIFDYL 151
+E Y +T+ F+ L
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA--AFEDL 1747
Query: 152 ---------------SL---SAIIDGRIFCVHGGLSPSIQTLDQIRTI-DR----KQEVP 188
SL +A+ + +S + + R + VP
Sbjct: 1748 KSKGLIPADATFAGHSLGEYAALA-----SLADVMSIE----SLVEVVFYRGMTMQVAVP 1798
Query: 189 HDGP------MCDLLWSDP---------EDTQ----------GWGVSP-----RG----- 213
D M + +P E Q GW V
Sbjct: 1799 RDELGRSNYGMIAI---NPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVA 1855
Query: 214 AGYLFGSDV---VASFNAANNIDMICRAHQLVMEGYKWH 249
AG L D V +F ID+I L +E + H
Sbjct: 1856 AGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 0.007
Identities = 27/200 (13%), Positives = 58/200 (29%), Gaps = 68/200 (34%)
Query: 3 EYIQDLDRQIEQLKRCDPIKESEVKALCAKAREILVEESNVQRIDSPVTVCGDIHGQFYD 62
+ +QD+ + I + + E+ I++ + V
Sbjct: 36 KDVQDMPKSI--------LSKEEID-------HIIMSKDAVSGT--------------LR 66
Query: 63 LKELFKVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQIT 122
L + E F+ + L++ Y ++ I+ E RQ +
Sbjct: 67 LFWTLLSKQE--EMVQKFVEE----------------VLRINYKFLMSPIK--TEQRQPS 106
Query: 123 QVYGFYDEC----------LRKYGSITVWRYCTEIFDYL--SLSAIIDGRIFCVHG--GL 168
+ Y E KY V R + + L +L + + + G G
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKY---NVSR--LQPYLKLRQALLELRPAKNVLIDGVLGS 161
Query: 169 SPSIQTLDQIRTIDRKQEVP 188
+ LD + + ++
Sbjct: 162 GKTWVALDVCLSYKVQCKMD 181
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; 2.10A {Thermus
thermophilus} SCOP: d.159.1.6
Length = 228
Score = 34.7 bits (79), Expect = 0.023
Identities = 9/81 (11%), Positives = 23/81 (28%), Gaps = 1/81 (1%)
Query: 52 VCGDIHGQFYDLKELFKVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITL 111
+ G L++ K+ D +G+ + + S + L
Sbjct: 10 ATSNPMGDLEALEKFVKLAPDTGADAIALIGNLMPKAAKSRDYAAFFRILS-EAHLPTAY 68
Query: 112 IRGNHESRQITQVYGFYDECL 132
+ G ++ + + L
Sbjct: 69 VPGPQDAPIWEYLREAANVEL 89
>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region;
alpha-beta plait, open-faced beta sandwich,
ferredoxin-like fold; NMR {Escherichia coli} SCOP:
d.64.1.1
Length = 116
Score = 30.9 bits (70), Expect = 0.15
Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 12/94 (12%)
Query: 19 DPIKESEVKALCAKAREIL-VEESNVQRIDSPVTVCGDIHGQFYDLKELFK-------VG 70
I E + + K ++ ++ R V + + +L +L G
Sbjct: 15 GRIDEPKAAPVRPKGDGVVRIQRQTSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCG 74
Query: 71 GDVPETNYLFMGDFVDRGFYSVETFLLLLALKVR 104
G V + GD D +++ L +KV+
Sbjct: 75 GAVKDGVIEIQGDKRDL----LKSLLEAKGMKVK 104
>3pkz_A Recombinase SIN; small serine recombinase, resolvase, DNA,
recombination; 1.80A {Staphylococcus aureus}
Length = 124
Score = 29.1 bits (66), Expect = 0.80
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 19/57 (33%)
Query: 6 QDLDRQIEQLKR--CDPI---KES--------EVKALCAKARE--ILVEESNVQRID 47
Q+L+RQ+E LK + I K+S ++ + V+ ID
Sbjct: 13 QNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVEMGDRFI----VESID 65
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific
recombinase, resolvase, DNA-binding protein,
protein-DNA complex, DNA integration, DNA invertase,
DNA recombination; 3.20A {Staphylococcus aureus}
Length = 209
Score = 29.6 bits (67), Expect = 0.98
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 19/57 (33%)
Query: 6 QDLDRQIEQLKR--CDPI---KES--------EVKALCAKARE--ILVEESNVQRID 47
Q+L+RQ+E LK + I K+S ++ R + V+ ID
Sbjct: 13 QNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVRMGDRFI----VESID 65
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria
monocytogenes}
Length = 443
Score = 30.2 bits (67), Expect = 1.1
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 79 LFMGDFVDRG-FYSVETFLLLLALKVRYPDRITLIRGNHESR 119
+ GD + G S E L + ++ ++ GNH+
Sbjct: 97 IISGDLTNNGEKTSHEELAKKLTQVEKNGTQVFVVPGNHDIN 138
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown
function, NPPSFA, national PROJ protein structural and
functional analyses; 1.60A {Aquifex aeolicus} SCOP:
d.159.1.6
Length = 260
Score = 29.3 bits (65), Expect = 1.4
Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 16/91 (17%)
Query: 54 GDIHGQFYDLKELFKV----GGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRI 109
+ +F L +L V D+ + +G+ + E L R P+R
Sbjct: 12 KNFKERFDLLPKLKGVIAEKQPDI----LVVVGNILKNEALEKE--YERAHLARREPNRK 65
Query: 110 TLIRGNHESRQITQVYGFYDECLRKYGSITV 140
+ H + D+ R+ G + V
Sbjct: 66 VIHENEHYIIET------LDKFFREIGELGV 90
Score = 29.0 bits (64), Expect = 1.7
Identities = 12/120 (10%), Positives = 33/120 (27%), Gaps = 4/120 (3%)
Query: 37 LVEESNVQRIDSPVTVCGDIHGQFYDLKELFKVGGDVPETNYLFMGDFVDRGFYSVETFL 96
L ++ D + V G+I KE + E N + + +++ F
Sbjct: 24 LKGVIAEKQPDI-LVVVGNILKNEALEKEYERAHLARREPNRKVIHENEHYIIETLDKFF 82
Query: 97 LLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSITVWRYCTEIFDYLSLSAI 156
+ + ++ G +++ + Y+ + +
Sbjct: 83 REIG---ELGVKTFVVPGKNDAPLKIFLRAAYEAETAYPNIRVLHEGFAGWRGEFEVIGF 139
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 29.0 bits (66), Expect = 2.6
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 145 TEIFDYLSLSAIIDGRIFCVHGGLSPSIQTLDQIRTIDRKQEVP 188
TEI+DYL L GR C G+ QT++Q+ +DR P
Sbjct: 122 TEIYDYLRLLFARIGRPICPTHGIEIQSQTIEQM--VDRLLSYP 163
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A
{Escherichia coli} PDB: 2iop_A
Length = 624
Score = 28.7 bits (65), Expect = 2.7
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Query: 7 DLDRQIEQLKRCDPIKESEVKALCAKAREILVEE-SNV---QR-IDSPVTVCGDIHGQFY 61
L++ +++ E + + + +L E +V R D+P V D
Sbjct: 489 SLEKLADEVDESAKEAEKALTPFIDRVKALLGERVKDVRLTHRLTDTPAIVSTDADEMST 548
Query: 62 DLKELFK-VGGDVPETNYLF 80
+ +LF G VPE Y+F
Sbjct: 549 QMAKLFAAAGQKVPEVKYIF 568
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 28.6 bits (65), Expect = 3.0
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 145 TEIFDYLSLSAIIDGRIFCVHGGLSPSIQTLDQIRTIDRKQEVP 188
TE++DYL L G C G + QT QI +D+ +P
Sbjct: 124 TEVYDYLRLLYARAGTPHCPTCGERVARQTPQQI--VDQVLAMP 165
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin,
calcium ION; 1.91A {Bacillus SP}
Length = 416
Score = 28.0 bits (61), Expect = 4.9
Identities = 14/103 (13%), Positives = 30/103 (29%), Gaps = 11/103 (10%)
Query: 205 QGWGVSPRGAGYLFGSDVVASFNAANNIDMICRAHQLVMEGYKWHFNETVLTVWS-APNY 263
+ ++ Y +G V + A NN ++ VWS
Sbjct: 302 EFSNLADYDFQYAWGVGVFSQIYAQNN----------YFSFDWDIDPSLIIKVWSKNEES 351
Query: 264 CYRCGNVAAILELNENLQREFTIFEAAPQESRGIPSKKPQADY 306
Y G + + + + E+ + + + KP +
Sbjct: 352 MYETGTIVDLPNGRRYIDLVASYNESNTLQLKKEVTWKPMFYH 394
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 27.8 bits (63), Expect = 5.2
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 145 TEIFDYLS-LSAIIDGRIFCVHGGLSPSIQTLDQI 178
TEI+DYL L A I G+ C G +++D+I
Sbjct: 102 TEIYDYLRVLYARI-GKAHCPECGRPLEKKSIDEI 135
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase,
recombination; 3.80A {Enterobacteria phage MU}
Length = 193
Score = 27.2 bits (61), Expect = 6.1
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 18/56 (32%)
Query: 6 QDLDRQIEQLKR--CDPI---KES-------EVKALCAKARE--ILVEESNVQRID 47
Q+ D Q L C+ I K S +K + ++ LV V ++D
Sbjct: 13 QNTDLQRNALVCAGCEQIFEDKLSGTRTDRPGLKRALKRLQKGDTLV----VWKLD 64
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA
complex, double helix, overhanging base, DNA binding
protein/DNA complex; 3.00A {Escherichia coli} SCOP:
a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A
1ret_A
Length = 183
Score = 26.8 bits (60), Expect = 6.4
Identities = 6/19 (31%), Positives = 8/19 (42%), Gaps = 2/19 (10%)
Query: 6 QDLDRQIEQLKR--CDPIK 22
Q LD Q+ LK +
Sbjct: 14 QSLDIQVRALKDAGVKANR 32
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG,
midwest center for structu genomics, PSI; 1.65A {Vibrio
parahaemolyticus}
Length = 177
Score = 26.8 bits (60), Expect = 7.1
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 90 YSVETFLLLLALKVRYPD-RITLIRG 114
SV T+ LL ++ YP IT + G
Sbjct: 81 QSVTTYALLEKIQEIYPTADITFVIG 106
>2gm5_A Transposon gamma-delta resolvase; site specific recombination,
recombin; 2.10A {Escherichia coli} PDB: 2rsl_A 1gdr_A
1ght_A 1hx7_A
Length = 139
Score = 26.3 bits (59), Expect = 7.2
Identities = 6/19 (31%), Positives = 8/19 (42%), Gaps = 2/19 (10%)
Query: 6 QDLDRQIEQLKR--CDPIK 22
Q LD Q+ LK +
Sbjct: 13 QSLDIQVRALKDAGVKANR 31
>1muk_A Minor core protein lambda 3; single subunit polymerase fold,
fingers, PALM, thumb, right hand configuration, viral
protein; 2.50A {Reovirus SP} SCOP: e.8.1.4 PDB: 1mwh_A*
1n1h_A* 1n35_A* 1n38_A* 1uon_A* 2cse_1
Length = 1267
Score = 27.4 bits (60), Expect = 7.2
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 107 DRITLIRGNHESRQITQVYGFYDECLRKYGSITVWRYCTEIFD---YLSLSAIIDGRI 161
D + +I G + ++ E + KYG W+Y YL L I RI
Sbjct: 735 DGLMIIDGTTAGKVNSETIQNDLELISKYGEEFGWKYDIAYDGTAEYLKLYFIFGCRI 792
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET:
ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Length = 559
Score = 27.2 bits (61), Expect = 9.2
Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 7 DLDRQIEQLKRCDPIKESEVKALCAKAREILVEE-SNV---QR-IDSPVTVCGDIHGQFY 61
L++ +++ E + + + +L E +V R D+P V D
Sbjct: 489 SLEKLADEVDESAKEAEKALTPFIDRVKALLGERVKDVRLTHRLTDTPAIVSTDADEMST 548
Query: 62 DLKELFK 68
+ +LF
Sbjct: 549 QMAKLFA 555
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.439
Gapped
Lambda K H
0.267 0.0524 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,946,330
Number of extensions: 296721
Number of successful extensions: 717
Number of sequences better than 10.0: 1
Number of HSP's gapped: 674
Number of HSP's successfully gapped: 46
Length of query: 308
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 215
Effective length of database: 4,105,140
Effective search space: 882605100
Effective search space used: 882605100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.2 bits)