RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13699
(308 letters)
>d3c5wc1 d.159.1.3 (C:6-293) Protein phosphatase 2A catalytic
subunit alpha isoform, PP2A-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 288
Score = 400 bits (1029), Expect = e-142
Identities = 192/288 (66%), Positives = 240/288 (83%)
Query: 4 YIQDLDRQIEQLKRCDPIKESEVKALCAKAREILVEESNVQRIDSPVTVCGDIHGQFYDL 63
+ ++LD+ IEQL C + ES+VK+LC KA+EIL +ESNVQ + PVTVCGD+HGQF+DL
Sbjct: 1 FTKELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDL 60
Query: 64 KELFKVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQ 123
ELF++GG P+TNYLFMGD+VDRG+YSVET LL+ALKVRY +RIT++RGNHESRQITQ
Sbjct: 61 MELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQ 120
Query: 124 VYGFYDECLRKYGSITVWRYCTEIFDYLSLSAIIDGRIFCVHGGLSPSIQTLDQIRTIDR 183
VYGFYDECLRKYG+ VW+Y T++FDYL L+A++DG+IFC+HGGLSPSI TLD IR +DR
Sbjct: 121 VYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDR 180
Query: 184 KQEVPHDGPMCDLLWSDPEDTQGWGVSPRGAGYLFGSDVVASFNAANNIDMICRAHQLVM 243
QEVPH+GPMCDLLWSDP+D GWG+SPRGAGY FG D+ +FN AN + ++ RAHQLVM
Sbjct: 181 LQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVM 240
Query: 244 EGYKWHFNETVLTVWSAPNYCYRCGNVAAILELNENLQREFTIFEAAP 291
EGY W + V+T++SAPNYCYRCGN AAI+EL++ L+ F F+ AP
Sbjct: 241 EGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAP 288
>d1auia_ d.159.1.3 (A:) Protein phosphatase-2B (PP-2B, calcineurin A
subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 473
Score = 375 bits (963), Expect = e-129
Identities = 123/301 (40%), Positives = 172/301 (57%), Gaps = 16/301 (5%)
Query: 7 DLDRQIEQLKRCDPIKESEVKALCAKAREILVEESNVQRIDSPVTVCGDIHGQFYDLKEL 66
+D L + ++ES + + IL +E N+ ID+PVTVCGDIHGQF+DL +L
Sbjct: 29 RVDILKAHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAPVTVCGDIHGQFFDLMKL 88
Query: 67 FKVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYG 126
F+VGG T YLF+GD+VDRG++S+E L L ALK+ YP + L+RGNHE R +T+ +
Sbjct: 89 FEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFT 148
Query: 127 FYDECLRKYGSITVWRYCTEIFDYLSLSAIIDGRIFCVHGGLSPSIQTLDQIRTIDRKQE 186
F EC KY V+ C + FD L L+A+++ + CVHGGLSP I TLD IR +DR +E
Sbjct: 149 FKQECKIKYSE-RVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINTLDDIRKLDRFKE 207
Query: 187 VPHDGPMCDLLWSDPEDTQG--------WGVSPRGAGYLFGSDVVASFNAANNIDMICRA 238
P GPMCD+LWSDP + G + RG Y + V F NN+ I RA
Sbjct: 208 PPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLSILRA 267
Query: 239 HQLVMEGYKWHFN------ETVLTVWSAPNYCYRCGNVAAILELNENLQREFTIFEAAPQ 292
H+ GY+ + +++T++SAPNY N AA+L+ N+ F +P
Sbjct: 268 HEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNVM-NIRQFNCSPH 326
Query: 293 E 293
Sbjct: 327 P 327
>d1s95a_ d.159.1.3 (A:) Serine/threonine protein phosphatase 5, PP5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 368 bits (946), Expect = e-129
Identities = 122/307 (39%), Positives = 175/307 (57%), Gaps = 13/307 (4%)
Query: 5 IQDLDRQIEQLKRCDPIKESEVKALCAKAREILVEESNVQRI----DSPVTVCGDIHGQF 60
I + ++ K + + + +E+L + S + +TVCGD HGQF
Sbjct: 13 ISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHGQF 72
Query: 61 YDLKELFKVGGDVPETN-YLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESR 119
YDL +F++ G ETN Y+F GDFVDRG +SVE L L K+ YPD L+RGNHE+
Sbjct: 73 YDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETD 132
Query: 120 QITQVYGFYDECLRKYGSITVWRYCTEIFDYLSLSAIIDGRIFCVHGGL-SPSIQTLDQI 178
+ Q+YGF E KY + ++ +E+F++L L+ I+G++ +HGGL S TLD I
Sbjct: 133 NMNQIYGFEGEVKAKYTA-QMYELFSEVFEWLPLAQCINGKVLIMHGGLFSEDGVTLDDI 191
Query: 179 RTIDRKQEVPHDGPMCDLLWSDPEDTQGWGVSPRGAGYLFGSDVVASFNAANNIDMICRA 238
R I+R ++ P GPMCDLLWSDP+ G +S RG FG DV +F NN+D I R+
Sbjct: 192 RKIERNRQPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFLEENNLDYIIRS 251
Query: 239 HQLVMEGYKWHFNETVLTVWSAPNYCYRCGNVAAILEL-NENLQREFTIFEAAPQESRGI 297
H++ EGY+ +TV+SAPNYC + GN A+ + L +L+ +F F A P
Sbjct: 252 HEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFTAVPH----- 306
Query: 298 PSKKPQA 304
P+ KP A
Sbjct: 307 PNVKPMA 313
>d1jk7a_ d.159.1.3 (A:) Protein phosphatase-1 (PP-1) {Human (Homo
sapiens), beta isoform [TaxId: 9606]}
Length = 294
Score = 365 bits (938), Expect = e-128
Identities = 133/293 (45%), Positives = 201/293 (68%), Gaps = 10/293 (3%)
Query: 7 DLDRQIEQL--------KRCDPIKESEVKALCAKAREILVEESNVQRIDSPVTVCGDIHG 58
++D I++L + ++E+E++ LC K+REI + + + +++P+ +CGDIHG
Sbjct: 3 NIDSIIQRLLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHG 62
Query: 59 QFYDLKELFKVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHES 118
Q+YDL LF+ GG PE+NYLF+GD+VDRG S+ET LLLA K++YP+ L+RGNHE
Sbjct: 63 QYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHEC 122
Query: 119 RQITQVYGFYDECLRKYGSITVWRYCTEIFDYLSLSAIIDGRIFCVHGGLSPSIQTLDQI 178
I ++YGFYDEC R+Y +W+ T+ F+ L ++AI+D +IFC HGGLSP +Q+++QI
Sbjct: 123 ASINRIYGFYDECKRRYNI-KLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSMEQI 181
Query: 179 RTIDRKQEVPHDGPMCDLLWSDP-EDTQGWGVSPRGAGYLFGSDVVASFNAANNIDMICR 237
R I R +VP G +CDLLWSDP +D GWG + RG + FG++VVA F +++D+ICR
Sbjct: 182 RRIMRPTDVPDQGLLCDLLWSDPDKDVLGWGENDRGVSFTFGAEVVAKFLHKHDLDLICR 241
Query: 238 AHQLVMEGYKWHFNETVLTVWSAPNYCYRCGNVAAILELNENLQREFTIFEAA 290
AHQ+V +GY++ ++T++SAPNYC N A++ ++E L F I + A
Sbjct: 242 AHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPA 294
>d1nnwa_ d.159.1.5 (A:) Hypothetical protein PF1291 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 251
Score = 63.9 bits (154), Expect = 2e-12
Identities = 24/236 (10%), Positives = 54/236 (22%), Gaps = 28/236 (11%)
Query: 49 PVTVCGDIHGQFYDLKELFK-----VGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKV 103
V V +I G L Y +G+ V Y E ++ L
Sbjct: 2 YVAVLANIAGNLPALTAALSRIEEMREEGYEIEKYYILGNIVGLFPYPKEVIEVIKDLT- 60
Query: 104 RYPDRITLIRGNHESRQITQVYGFYDECLRKYGSITVWRYCTEIFDYLSLSAIIDGRIFC 163
+ + +IRG ++ D L +
Sbjct: 61 -KKENVKIIRGKYDQIIAMSDPHATDPGYIDK-----------------LELPGHVKKAL 102
Query: 164 VHGGLSPSIQTLDQIRTIDRKQEVPHDGPMCDLLWSDPEDTQGWGVSPRGAGYLFGSDVV 223
+ + +R + G ++ P + V + +
Sbjct: 103 KFTWEKLGHEGREYLRDLPIYLVDKIGGNEVFGVYGSPINPFDGEVLAEQPTSYYEAI-- 160
Query: 224 ASFNAANNIDMICRAHQLVMEGYKWHFNETVLTVWSAPNYCYRCGNVAAILELNEN 279
+ +M+ A + + V A+++++
Sbjct: 161 --MRPVKDYEMLIVASPMYPVDAMTRYGRVVCPGSVGFPPGKEHKATFALVDVDTL 214
>d1g5ba_ d.159.1.3 (A:) lambda ser/thr protein phosphatase
{Bacteriophage lambda [TaxId: 10710]}
Length = 219
Score = 62.2 bits (150), Expect = 4e-12
Identities = 31/162 (19%), Positives = 52/162 (32%), Gaps = 25/162 (15%)
Query: 41 SNVQRID----SPVTVCGDIHGQFYDLKELF-KVGGDVPETNYLFMGDFVDRGFYSVETF 95
++ID + V GD+HG + +L +G D + + +GD VDRG +VE
Sbjct: 2 RYYEKIDGSKYRNIWVVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVEC- 60
Query: 96 LLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLR-----------KYGSITVWRYC 144
L++ +RGNHE I + + Y + +
Sbjct: 61 -----LELITFPWFRAVRGNHEQMMIDGLSERGNVNHWLLNGGGWFFNLDYDKEILAKAL 115
Query: 145 TEIFDYLSLS---AIIDGRIFCVHGGLSPSIQTLDQIRTIDR 183
D L L D + H + +
Sbjct: 116 AHKADELPLIIELVSKDKKYVICHADYPFDEYEFGKPVDHQQ 157
>d1su1a_ d.159.1.7 (A:) Phosphodiesterase yfcE {Escherichia coli
[TaxId: 562]}
Length = 184
Score = 46.9 bits (110), Expect = 5e-07
Identities = 16/139 (11%), Positives = 39/139 (28%), Gaps = 7/139 (5%)
Query: 50 VTVCGDIHGQFYDLKELFKVGGDVPETNYLFMGDFVDRGFYSVETFLL----LLALKVRY 105
+ DIHG + + ++ + +GD ++ G + ++
Sbjct: 4 LMFASDIHGSLPATERVLELFAQSGAQWLVILGDVLNHGPRNALPEGYAPAKVVERLNEV 63
Query: 106 PDRITLIRGNHESRQITQVYGFYDECLRKYGSITVWRYCTEIFDYLSLS---AIIDGRIF 162
++ +RGN +S + F + + R A+ +
Sbjct: 64 AHKVIAVRGNCDSEVDQMLLHFPITAPWQQVLLEKQRLFLTHGHLFGPENLPALNQNDVL 123
Query: 163 CVHGGLSPSIQTLDQIRTI 181
P + +I
Sbjct: 124 VYGHTHLPVAEQRGEIFHF 142
>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus
thermophilus [TaxId: 274]}
Length = 228
Score = 42.8 bits (99), Expect = 2e-05
Identities = 24/228 (10%), Positives = 58/228 (25%), Gaps = 17/228 (7%)
Query: 52 VCGDIHGQFYDLKELFKVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITL 111
+ G L++ K+ D +G+ + + + +
Sbjct: 10 ATSNPMGDLEALEKFVKLAPDTGADAIALIGNLMPKA-AKSRDYAAFFRILSEAHLPTAY 68
Query: 112 IRGNHESRQITQVYGFYDECLRKYGSITVWRYCTEIFDYLSLSAIIDGRIFCVHGGLSPS 171
+ G ++ + + E R E F + ++ G + P
Sbjct: 69 VPGPQDAPI----WEYLREAANVELVHPEMRNVHETFTFWRGPYLVAGVGGEIADEGEPE 124
Query: 172 IQTLDQIRTIDRKQEVPHDGPMCDLLWSDPEDTQGWGVSPRGAGYLFGSDVVASFNAANN 231
+ + + + D T + GS VA +N
Sbjct: 125 EHEALRYPAWVAEYRLKALWELKDYPKIFLFHTMPYHKGLNEQ----GSHEVAHLIKTHN 180
Query: 232 IDMICRAHQLVMEGYKWHFNETVLTVWSAPNYCYRCGNVAAILELNEN 279
++ A + ++ V+ Y ++L+L
Sbjct: 181 PLLVLVAG--KGQKHEMLGASWVVVPGDLSEGEY------SLLDLRAR 220
>d2yvta1 d.159.1.6 (A:4-260) Uncharacterized protein Aq_1956
{Aquifex aeolicus [TaxId: 63363]}
Length = 257
Score = 30.1 bits (66), Expect = 0.33
Identities = 26/253 (10%), Positives = 61/253 (24%), Gaps = 35/253 (13%)
Query: 52 VCGDIHGQFYDLKELFKVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPD---- 107
+ +F L +L V + + +G+ + E LA +
Sbjct: 7 AIKNFKERFDLLPKLKGVIAEKQPDILVVVGNILKNEALEKEYERAHLARREPNRKVIHE 66
Query: 108 ---------------------RITLIRGNHESRQITQVYGFYDECLRKYGSITVWRYCTE 146
+ ++ G +++ + Y+ +
Sbjct: 67 NEHYIIETLDKFFREIGELGVKTFVVPGKNDAPLKIFLRAAYEAETAYPNIRVLHEGFAG 126
Query: 147 IFDYLSLSAIIDGRIFCVHGGLSPSIQTLDQIRTIDRKQEVPHDGPMCDLLWSDPEDTQG 206
+ + + + V P +
Sbjct: 127 WRGEFEVIGFGGLLTEHEFEE--DFVLKYPRWYVEYILKFVNELKPRRLVTIFYTPPIGE 184
Query: 207 WGVSPRGAGYLFGSDVVASFNAANNIDMICRAHQLVMEGYKWHFNETVLTVWSAPNYCYR 266
+ GS VV + + N ++ H V +G++ N V+ Y
Sbjct: 185 FVDRTPEDPKHHGSAVVNTIIKSLNPEVAIVGH--VGKGHELVGNTIVVNPGEFEEGRY- 241
Query: 267 CGNVAAILELNEN 279
A L+L ++
Sbjct: 242 -----AFLDLTQH 249
>d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase
PepX, middle domain {Lactococcus lactis [TaxId: 1358]}
Length = 405
Score = 29.1 bits (64), Expect = 0.68
Identities = 10/55 (18%), Positives = 15/55 (27%)
Query: 79 LFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLR 133
L + D + + AL + L RG H Q F +
Sbjct: 316 LIVHGLQDWNVTPEQAYNFWKALPEGHAKHAFLHRGAHIYMNSWQSIDFSETINA 370
>d2ozbb1 a.183.1.1 (B:85-333) U4/U6 small nuclear ribonucleoprotein
Prp31 {Human (Homo sapiens) [TaxId: 9606]}
Length = 249
Score = 28.2 bits (63), Expect = 1.0
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 222 VVASFNAANNIDM-ICRAHQLVMEGYKWHFNETVLTVWSAPNYC---YRCGNVAAILELN 277
+V + N I+ + H+ + + Y F E V +A +Y GN + N
Sbjct: 9 IVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKNN 68
Query: 278 ENLQREFT 285
ENLQ+ T
Sbjct: 69 ENLQQILT 76
>d1d5ra1 b.7.1.1 (A:188-351) Pten tumor suppressor
(Phoshphoinositide phosphatase), C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 141
Score = 26.4 bits (58), Expect = 2.8
Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 18 CDP---IKESEVKALCAKAREILVEESNVQ-RIDSPVTVCGDIHGQFYDLKELFK 68
C+P + + +VK + + E+ + P+ VCGDI +F+ +
Sbjct: 24 CNPQFVVCQLKVKIYSSNSGPTRREDKFMYFEFPQPLPVCGDIKVEFFHKQNKML 78
>d1d1ra_ d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]}
Length = 83
Score = 25.3 bits (56), Expect = 3.6
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 11/63 (17%)
Query: 49 PVTVCGDIHGQFYDLKELFK-------VGGDVPETNYLFMGDFVDRGFYSVETFLLLLAL 101
V + + +L +L GG V + GD D +++ L +
Sbjct: 19 GVCLITGVDLDDAELTKLAAELKKKCGCGGAVKDGVIEIQGDKRDL----LKSLLEAKGM 74
Query: 102 KVR 104
KV+
Sbjct: 75 KVK 77
>d1muka_ e.8.1.4 (A:) Reovirus polymerase lambda3 {Reovirus [TaxId:
10891]}
Length = 1264
Score = 26.1 bits (57), Expect = 7.3
Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 130 ECLRKYGSITVWRYCTEIFD---YLSLSAIIDGRI 161
E + KYG W+Y YL L I RI
Sbjct: 757 ELISKYGEEFGWKYDIAYDGTAEYLKLYFIFGCRI 791
>d2o8ra4 d.136.1.4 (A:506-691) Polyphosphate kinase, PPK
{Porphyromonas gingivalis [TaxId: 837]}
Length = 186
Score = 25.2 bits (55), Expect = 9.4
Identities = 8/55 (14%), Positives = 16/55 (29%), Gaps = 3/55 (5%)
Query: 218 FGSDVVASFNAANNIDMICRAHQLVMEGYKWHFNETVLTVWSAPNY---CYRCGN 269
+ + + A ID+I R ++ N V + + N
Sbjct: 44 VITQLYRASEAGVEIDLIVRGICCLVPDMPQSRNIRVTRLVDMYLEHSRIWCFHN 98
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.140 0.439
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,238,773
Number of extensions: 59397
Number of successful extensions: 180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 21
Length of query: 308
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 223
Effective length of database: 1,240,546
Effective search space: 276641758
Effective search space used: 276641758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.6 bits)