BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13700
(166 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2K07|A Chain A, Solution Nmr Structure Of Human E2-Like Ubiquitin-Fold
Modifier Conjugating Enzyme 1 (Ufc1). Northeast
Structural Genomics Consortium Target Hr41
Length = 175
Score = 276 bits (705), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 122/165 (73%), Positives = 147/165 (89%)
Query: 2 DESSKKTLSSIPLLKTKAGPRDKDLWPKRLKEEYVALIEYVKNNKAADNDWFRLESNKEG 61
DE++++ +S IP+LKT AGPRD++LW +RLKEEY +LI YV+NNK ADNDWFRLESNKEG
Sbjct: 3 DEATRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVENNKNADNDWFRLESNKEG 62
Query: 62 TKWFGSCWFFYNQLKYEFQIEFDIPITFPTTAPELALPELDGKTAKMYRGGKICLSDHFK 121
T+WFG CW+ ++ LKYEF IEFDIPIT+PTTAPE+A+PELDGKTAKMYRGGKICL+DHFK
Sbjct: 63 TRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFK 122
Query: 122 PLWARNVPKFGIAHAMALGLGPWLAVEIPALVDAGIIKYQEKTES 166
PLWARNVPKFG+AH MALGLGPWLAVEIP L+ G+I+++EK
Sbjct: 123 PLWARNVPKFGLAHLMALGLGPWLAVEIPDLIQKGVIQHKEKCNQ 167
>pdb|2Z6O|A Chain A, Crystal Structure Of The Ufc1, Ufm1 Conjugating Enzyme 1
Length = 172
Score = 275 bits (703), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 122/165 (73%), Positives = 147/165 (89%)
Query: 2 DESSKKTLSSIPLLKTKAGPRDKDLWPKRLKEEYVALIEYVKNNKAADNDWFRLESNKEG 61
DE++++ +S IP+LKT AGPRD++LW +RLKEEY +LI YV+NNK ADNDWFRLESNKEG
Sbjct: 8 DEATRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVENNKNADNDWFRLESNKEG 67
Query: 62 TKWFGSCWFFYNQLKYEFQIEFDIPITFPTTAPELALPELDGKTAKMYRGGKICLSDHFK 121
T+WFG CW+ ++ LKYEF IEFDIPIT+PTTAPE+A+PELDGKTAKMYRGGKICL+DHFK
Sbjct: 68 TRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFK 127
Query: 122 PLWARNVPKFGIAHAMALGLGPWLAVEIPALVDAGIIKYQEKTES 166
PLWARNVPKFG+AH MALGLGPWLAVEIP L+ G+I+++EK
Sbjct: 128 PLWARNVPKFGLAHLMALGLGPWLAVEIPDLIQKGVIQHKEKCNQ 172
>pdb|3EVX|A Chain A, Crystal Structure Of The Human E2-Like Ubiquitin-Fold
Modifier Conjugating Enzyme 1 (Ufc1). Northeast
Structural Genomics Consortium Target Hr41
pdb|3EVX|B Chain B, Crystal Structure Of The Human E2-Like Ubiquitin-Fold
Modifier Conjugating Enzyme 1 (Ufc1). Northeast
Structural Genomics Consortium Target Hr41
pdb|3EVX|C Chain C, Crystal Structure Of The Human E2-Like Ubiquitin-Fold
Modifier Conjugating Enzyme 1 (Ufc1). Northeast
Structural Genomics Consortium Target Hr41
pdb|3EVX|D Chain D, Crystal Structure Of The Human E2-Like Ubiquitin-Fold
Modifier Conjugating Enzyme 1 (Ufc1). Northeast
Structural Genomics Consortium Target Hr41
Length = 175
Score = 270 bits (690), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 120/163 (73%), Positives = 145/163 (88%)
Query: 2 DESSKKTLSSIPLLKTKAGPRDKDLWPKRLKEEYVALIEYVKNNKAADNDWFRLESNKEG 61
DE++++ +S IP+LKT AGPRD++LW +RLKEEY +LI YV+NNK ADNDWFRLESNKEG
Sbjct: 3 DEATRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVENNKNADNDWFRLESNKEG 62
Query: 62 TKWFGSCWFFYNQLKYEFQIEFDIPITFPTTAPELALPELDGKTAKMYRGGKICLSDHFK 121
T+WFG CW+ ++ LKYEF IEFDIPIT+PTTAPE+A+PELDGKTAK YRGGKICL+DHFK
Sbjct: 63 TRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKXYRGGKICLTDHFK 122
Query: 122 PLWARNVPKFGIAHAMALGLGPWLAVEIPALVDAGIIKYQEKT 164
PLWARNVPKFG+AH ALGLGPWLAVEIP L+ G+I+++EK
Sbjct: 123 PLWARNVPKFGLAHLXALGLGPWLAVEIPDLIQKGVIQHKEKC 165
>pdb|2Z6P|A Chain A, Crystal Structure Of The Ufc1, Ufm1 Conjugating Enzyme 1
Length = 172
Score = 270 bits (689), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 120/165 (72%), Positives = 145/165 (87%)
Query: 2 DESSKKTLSSIPLLKTKAGPRDKDLWPKRLKEEYVALIEYVKNNKAADNDWFRLESNKEG 61
DE++++ +S IP+LKT AGPRD++LW +RLKEEY +LI YV+NNK ADNDWFRLESNKEG
Sbjct: 8 DEATRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVENNKNADNDWFRLESNKEG 67
Query: 62 TKWFGSCWFFYNQLKYEFQIEFDIPITFPTTAPELALPELDGKTAKMYRGGKICLSDHFK 121
T+WFG CW+ ++ LKYEF IEFDIPIT+PTTAPE+A+PELDGKTAK YRGGKICL+DHFK
Sbjct: 68 TRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKXYRGGKICLTDHFK 127
Query: 122 PLWARNVPKFGIAHAMALGLGPWLAVEIPALVDAGIIKYQEKTES 166
PLWARNVPKFG+AH ALGLGPWLAVEIP L+ G+I+++EK
Sbjct: 128 PLWARNVPKFGLAHLXALGLGPWLAVEIPDLIQKGVIQHKEKCNQ 172
>pdb|3KPA|A Chain A, Ubiquitin Fold Modifier Conjugating Enzyme From Leishmania
Major (Probable)
pdb|3KPA|B Chain B, Ubiquitin Fold Modifier Conjugating Enzyme From Leishmania
Major (Probable)
pdb|3KPA|C Chain C, Ubiquitin Fold Modifier Conjugating Enzyme From Leishmania
Major (Probable)
Length = 168
Score = 228 bits (580), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 100/158 (63%), Positives = 127/158 (80%)
Query: 2 DESSKKTLSSIPLLKTKAGPRDKDLWPKRLKEEYVALIEYVKNNKAADNDWFRLESNKEG 61
+ S K+++S IPLLKTKAGPRD D W RLKEEY +LI YV++NKA+D+ WF LESN +G
Sbjct: 10 EPSVKESVSRIPLLKTKAGPRDGDKWTARLKEEYASLITYVEHNKASDSHWFHLESNPQG 69
Query: 62 TKWFGSCWFFYNQLKYEFQIEFDIPITFPTTAPELALPELDGKTAKMYRGGKICLSDHFK 121
T+W+G+CW +Y KYEF+ FDIP+T+P PE+ALPEL+GKT K YRGGKIC + HF
Sbjct: 70 TRWYGTCWTYYKNEKYEFEXNFDIPVTYPQAPPEIALPELEGKTVKXYRGGKICXTTHFF 129
Query: 122 PLWARNVPKFGIAHAMALGLGPWLAVEIPALVDAGIIK 159
PLWARNVP FGI+H +ALGLGPWL++E+PA V+ G +K
Sbjct: 130 PLWARNVPYFGISHVLALGLGPWLSIEVPAXVEEGYLK 167
>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp.
pdb|1XC6|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp. In Complex With Galactose
Length = 971
Score = 31.2 bits (69), Expect = 0.25, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 61 GTKWFGSCWFFYNQLKYEFQIEFDIPITFPTTAPELALPELDGKTAKMYRGGKICLSDH 119
G+ S +F Y Q + +T PT+A L +P+L G R KI ++D+
Sbjct: 382 GSNSSASSFFVIRHSDYSSQASVEYKLTVPTSAGNLTIPQLGGSLTLSGRDSKIHVTDY 440
>pdb|1VAK|A Chain A, T1 Capsid Structure Of Sesbania Mosaic Virus Coat Protein
Deletion Mutant Cp-N(Delta)65
Length = 203
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 55 LESNKEGTKWFGSCWFFYNQLKYEFQIEFDIPITFPTTAPELALPELDGKTAKMYRGGKI 114
L+ +K G KW+ + Y + D+ I P L + LDG ++ G+I
Sbjct: 130 LDVSKLGKKWYP----YKTSADYATAVGVDVNIATPLVPARLVIALLDGSSSTAVAAGRI 185
>pdb|1X36|A Chain A, T1 Capsid Of An Amino-Terminal Deletion Mutant Of Semv Cp
Length = 237
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 55 LESNKEGTKWFGSCWFFYNQLKYEFQIEFDIPITFPTTAPELALPELDGKTAKMYRGGKI 114
L+ +K G KW+ + Y + D+ I P L + LDG ++ G+I
Sbjct: 164 LDVSKLGKKWYP----YKTSADYATAVGVDVNIATPLVPARLVIALLDGSSSTAVAAGRI 219
>pdb|1VB4|A Chain A, T1 Capsid Structure Of Sesbania Mosaic Virus Coat Protein
Deletion Mutant Cp-N(Delta)36
Length = 232
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 55 LESNKEGTKWFGSCWFFYNQLKYEFQIEFDIPITFPTTAPELALPELDGKTAKMYRGGKI 114
L+ +K G KW+ + Y + D+ I P L + LDG ++ G+I
Sbjct: 159 LDVSKLGKKWYP----YKTSADYATAVGVDVNIATPLVPARLVIALLDGSSSTAVAAGRI 214
>pdb|2WLP|A Chain A, Sesbania Mosaic Virus Capsid Protein Dimer Mutant
(Rcp-Del- N65-W170k)
pdb|2WLP|B Chain B, Sesbania Mosaic Virus Capsid Protein Dimer Mutant
(Rcp-Del- N65-W170k)
Length = 203
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 55 LESNKEGTKWFGSCWFFYNQLKYEFQIEFDIPITFPTTAPELALPELDGKTAKMYRGGKI 114
L+ +K G KW+ + Y + D+ I P L + LDG ++ G+I
Sbjct: 130 LDVSKLGKKWYP----YKTSADYATAVGVDVNIATPLVPARLVIALLDGSSSTAVAAGRI 185
>pdb|2VQ0|A Chain A, Capsid Structure Of Sesbania Mosaic Virus Coat Protein
Deletion Mutant Rcp(Delta 48 To 59)
pdb|2VQ0|B Chain B, Capsid Structure Of Sesbania Mosaic Virus Coat Protein
Deletion Mutant Rcp(Delta 48 To 59)
pdb|2VQ0|C Chain C, Capsid Structure Of Sesbania Mosaic Virus Coat Protein
Deletion Mutant Rcp(Delta 48 To 59)
Length = 256
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 55 LESNKEGTKWFGSCWFFYNQLKYEFQIEFDIPITFPTTAPELALPELDGKTAKMYRGGKI 114
L+ +K G KW+ + Y + D+ I P L + LDG ++ G+I
Sbjct: 183 LDVSKLGKKWYP----YKTSADYATAVGVDVNIATPLVPARLVIALLDGSSSTAVAAGRI 238
>pdb|1X35|A Chain A, Recombinant T3 Capsid Of A Site Specific Mutant Of Semv Cp
pdb|1X35|B Chain B, Recombinant T3 Capsid Of A Site Specific Mutant Of Semv Cp
pdb|1X35|C Chain C, Recombinant T3 Capsid Of A Site Specific Mutant Of Semv Cp
Length = 268
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 55 LESNKEGTKWFGSCWFFYNQLKYEFQIEFDIPITFPTTAPELALPELDGKTAKMYRGGKI 114
L+ +K G KW+ + Y + D+ I P L + LDG ++ G+I
Sbjct: 195 LDVSKLGKKWYP----YKTSADYATAVGVDVNIATPLVPARLVIALLDGSSSTAVAAGRI 250
>pdb|1VB2|A Chain A, T1 Capsid Structure Of Sesbania Mosaic Virus Coat Protein
Deletion Mutant Cp-N(Delta)65-D146n-D149n
Length = 203
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 55 LESNKEGTKWFGSCWFFYNQLKYEFQIEFDIPITFPTTAPELALPELDGKTAKMYRGGKI 114
L+ +K G KW+ + Y + D+ I P L + LDG ++ G+I
Sbjct: 130 LDVSKLGKKWYP----YKTSADYATAVGVDVNIATPLVPARLVIALLDGSSSTAVAAGRI 185
>pdb|1X33|A Chain A, T=3 Recombinant Capsid Of Semv Cp
pdb|1X33|B Chain B, T=3 Recombinant Capsid Of Semv Cp
pdb|1X33|C Chain C, T=3 Recombinant Capsid Of Semv Cp
Length = 268
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 55 LESNKEGTKWFGSCWFFYNQLKYEFQIEFDIPITFPTTAPELALPELDGKTAKMYRGGKI 114
L+ +K G KW+ + Y + D+ I P L + LDG ++ G+I
Sbjct: 195 LDVSKLGKKWYP----YKTSADYATAVGVDVNIATPLVPARLVIALLDGSSSTAVAAGRI 250
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 26.2 bits (56), Expect = 9.0, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 87 ITFPTTAPELALPELDGKTAKMYRGGKICLSDH 119
+ PT+A +L +P+L G R KI ++D+
Sbjct: 425 VKLPTSAGDLTIPQLGGSLTLTGRDSKIHVTDY 457
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,369,752
Number of Sequences: 62578
Number of extensions: 234245
Number of successful extensions: 407
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 400
Number of HSP's gapped (non-prelim): 19
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)