RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13700
(166 letters)
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL
conjugation pathway, ligase; 1.60A {Homo sapiens} PDB:
2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Length = 172
Score = 301 bits (772), Expect = e-107
Identities = 122/164 (74%), Positives = 147/164 (89%)
Query: 2 DESSKKTLSSIPLLKTKAGPRDKDLWPKRLKEEYVALIEYVKNNKAADNDWFRLESNKEG 61
DE++++ +S IP+LKT AGPRD++LW +RLKEEY +LI YV+NNK ADNDWFRLESNKEG
Sbjct: 8 DEATRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVENNKNADNDWFRLESNKEG 67
Query: 62 TKWFGSCWFFYNQLKYEFQIEFDIPITFPTTAPELALPELDGKTAKMYRGGKICLSDHFK 121
T+WFG CW+ ++ LKYEF IEFDIPIT+PTTAPE+A+PELDGKTAKMYRGGKICL+DHFK
Sbjct: 68 TRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFK 127
Query: 122 PLWARNVPKFGIAHAMALGLGPWLAVEIPALVDAGIIKYQEKTE 165
PLWARNVPKFG+AH MALGLGPWLAVEIP L+ G+I+++EK
Sbjct: 128 PLWARNVPKFGLAHLMALGLGPWLAVEIPDLIQKGVIQHKEKCN 171
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation
pathway, ligase, structural genomics, PSI; 2.20A
{Leishmania major}
Length = 168
Score = 300 bits (769), Expect = e-106
Identities = 102/159 (64%), Positives = 132/159 (83%)
Query: 1 MDESSKKTLSSIPLLKTKAGPRDKDLWPKRLKEEYVALIEYVKNNKAADNDWFRLESNKE 60
M+ S K+++S IPLLKTKAGPRD D W RLKEEY +LI YV++NKA+D+ WF LESN +
Sbjct: 9 MEPSVKESVSRIPLLKTKAGPRDGDKWTARLKEEYASLITYVEHNKASDSHWFHLESNPQ 68
Query: 61 GTKWFGSCWFFYNQLKYEFQIEFDIPITFPTTAPELALPELDGKTAKMYRGGKICLSDHF 120
GT+W+G+CW +Y KYEF++ FDIP+T+P PE+ALPEL+GKT KMYRGGKIC++ HF
Sbjct: 69 GTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALPELEGKTVKMYRGGKICMTTHF 128
Query: 121 KPLWARNVPKFGIAHAMALGLGPWLAVEIPALVDAGIIK 159
PLWARNVP FGI+H +ALGLGPWL++E+PA+V+ G +K
Sbjct: 129 FPLWARNVPYFGISHVLALGLGPWLSIEVPAMVEEGYLK 167
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 2e-04
Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 31/112 (27%)
Query: 67 SCWFFYNQLKYEFQIEFDIPITF------PTTAPELAL-------PELDGKTAKMYRGG- 112
+ +F +QL+ +F P PTT EL ++ +
Sbjct: 25 ASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVL 84
Query: 113 KICLSDHFKP--LWARNVPKFGIAHAMALGLGPWLAVEIPALVDAGIIKYQE 162
+CL F+ L ++ HA LA ++ D ++K +E
Sbjct: 85 NLCL-TEFENCYLEGNDI------HA--------LAAKLLQENDTTLVKTKE 121
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.053
Identities = 6/26 (23%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 73 NQLKYEFQIEFDIPITFPTTAPELAL 98
LK +++ + + +AP LA+
Sbjct: 20 QALK---KLQASLKLYADDSAPALAI 42
>1r75_A Hypothetical protein; structural genomics, unknown function, PSI,
protein structur initiative; 1.86A {Leishmania major}
SCOP: b.134.1.1
Length = 141
Score = 28.1 bits (62), Expect = 0.78
Identities = 5/32 (15%), Positives = 10/32 (31%), Gaps = 7/32 (21%)
Query: 53 FRLESNKEGTKWFGSCWFFYN-QLKYEFQIEF 83
+R+ + W FYN + +
Sbjct: 43 YRIADTEARR------WAFYNDSKELIIHVAV 68
>2fe0_A SMP-1, small myristoylated protein 1; beta sheet, protein
transport, membrane protein; NMR {Leishmania major}
SCOP: b.134.1.1
Length = 136
Score = 27.2 bits (60), Expect = 1.7
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 11/48 (22%)
Query: 53 FRLESNKEGTKWFGSCWFFYN-QLKYEFQIEFDIPITFPTTAPELALP 99
FR+ + K+ W +YN +YE + TF AL
Sbjct: 43 FRIVNKKKKQ------WAYYNDTTQYEMHVLV----TFNEDCDIKALG 80
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II,
structural genomics, protein structure initiative; 1.66A
{Chlorobaculum tepidum}
Length = 165
Score = 27.0 bits (60), Expect = 2.1
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 2/24 (8%)
Query: 90 PTTAPELALPELDGKTAKM--YRG 111
PT AP + +DGK +G
Sbjct: 11 PTPAPSFSGVTVDGKPFSSASLKG 34
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural
genomics, PSI, protein structure initiative; 1.12A
{Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 136
Score = 26.1 bits (58), Expect = 4.3
Identities = 6/35 (17%), Positives = 8/35 (22%), Gaps = 7/35 (20%)
Query: 93 APELALPELDGKTAKM--YRGGKICLSDHFKPLWA 125
+ L G +G L F W
Sbjct: 4 RLQFTATTLSGAPFDGASLQGKPAVL--WF---WT 33
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI,
structural genomics, protein initiative; 2.45A
{Geobacter metallireducens gs-15}
Length = 154
Score = 25.7 bits (57), Expect = 6.4
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 90 PTTAPELALPELDGKTAKM--YRG 111
AP+ L L+G+ K+ +G
Sbjct: 5 ENPAPDFTLNTLNGEVVKLSDLKG 28
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2,
protein struct initiative; NMR {Neisseria meningitidis
serogroup B}
Length = 153
Score = 25.7 bits (57), Expect = 6.6
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 92 TAPELALPELDGKTAKM--YRG 111
TAP +LP+L GKT +G
Sbjct: 7 TAPAFSLPDLHGKTVSNADLQG 28
>1kxp_D Human vitamin D-binding protein; DBP, actin scavenger system, ACTI
protein, contractIle protein-protein binding complex;
HET: ATP; 2.10A {Homo sapiens} SCOP: a.126.1.1 a.126.1.1
a.126.1.1 PDB: 1kw2_A* 1j78_A* 1j7e_A* 1lot_A* 1ma9_A*
Length = 458
Score = 25.8 bits (56), Expect = 7.8
Identities = 7/49 (14%), Positives = 13/49 (26%), Gaps = 2/49 (4%)
Query: 67 SCWFFYNQLKYEFQIEFDIPITFPTTAPELALPELDGKTAKMYRGGKIC 115
C + E++ + + P+ EL K C
Sbjct: 390 LCADYSENTFTEYKKKLAERLK--AKLPDATPKELAKLVNKRSDFASNC 436
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase,
protease inhibitor, thiol protease inhibitor, UBL
conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Length = 323
Score = 25.8 bits (56), Expect = 7.9
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 77 YEFQIEFDIPITFPTTAPELALPELDGKTAK----MYRGGKICLS 117
+EF + F P +P++ P + L G + + +Y GK+CLS
Sbjct: 129 FEFDVYF--PQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLS 171
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP:
c.47.1.10 PDB: 3ios_A
Length = 136
Score = 24.9 bits (55), Expect = 9.4
Identities = 5/26 (19%), Positives = 7/26 (26%), Gaps = 2/26 (7%)
Query: 93 APELALPELDGKTAKM--YRGGKICL 116
+ + LDG G L
Sbjct: 5 QLQFSAKTLDGHDFHGESLLGKPAVL 30
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.431
Gapped
Lambda K H
0.267 0.0750 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,603,997
Number of extensions: 147190
Number of successful extensions: 336
Number of sequences better than 10.0: 1
Number of HSP's gapped: 336
Number of HSP's successfully gapped: 29
Length of query: 166
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 79
Effective length of database: 4,272,666
Effective search space: 337540614
Effective search space used: 337540614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.2 bits)