RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13700
         (166 letters)



>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 162

 Score =  315 bits (808), Expect = e-113
 Identities = 122/162 (75%), Positives = 147/162 (90%)

Query: 2   DESSKKTLSSIPLLKTKAGPRDKDLWPKRLKEEYVALIEYVKNNKAADNDWFRLESNKEG 61
           DE++++ +S IP+LKT AGPRD++LW +RLKEEY +LI YV+NNK ADNDWFRLESNKEG
Sbjct: 1   DEATRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVENNKNADNDWFRLESNKEG 60

Query: 62  TKWFGSCWFFYNQLKYEFQIEFDIPITFPTTAPELALPELDGKTAKMYRGGKICLSDHFK 121
           T+WFG CW+ ++ LKYEF IEFDIPIT+PTTAPE+A+PELDGKTAKMYRGGKICL+DHFK
Sbjct: 61  TRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFK 120

Query: 122 PLWARNVPKFGIAHAMALGLGPWLAVEIPALVDAGIIKYQEK 163
           PLWARNVPKFG+AH MALGLGPWLAVEIP L+  G+I+++EK
Sbjct: 121 PLWARNVPKFGLAHLMALGLGPWLAVEIPDLIQKGVIQHKEK 162


>d2fe0a1 b.134.1.1 (A:1-131) Small myristoylated protein 1, Smp-1
          {Leishmania major [TaxId: 5664]}
          Length = 131

 Score = 27.4 bits (61), Expect = 0.54
 Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 7/32 (21%)

Query: 53 FRLESNKEGTKWFGSCWFFYNQ-LKYEFQIEF 83
          FR+ + K+        W +YN   +YE  +  
Sbjct: 38 FRIVNKKKKQ------WAYYNDTTQYEMHVLV 63


>d1oi7a2 c.23.4.1 (A:122-288) Succinyl-CoA synthetase, alpha-chain,
           C-terminal domain {Thermus thermophilus [TaxId: 274]}
          Length = 167

 Score = 27.5 bits (60), Expect = 0.57
 Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 106 AKMYRGGKICLSDHFKPLWARNVPKFGIAHAMALGLGPWLAVEIPALVDAGII 158
            K +    +          A    + G A A+ +G       ++ A  +AGI 
Sbjct: 100 VKDHMKKPVVG--FIGGRSAPKGKRMGHAGAIIMGNVGTPESKLRAFAEAGIP 150


>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 117

 Score = 25.4 bits (55), Expect = 2.4
 Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 16/106 (15%)

Query: 28  PKRLKEEYVALIE-----YVKNNKAADNDWFRLESNKEGTKWFGSCWFFYNQLKYEFQIE 82
            KRL++E +AL          N K+  N   +           G+    Y     +FQ+ 
Sbjct: 5   QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWI-----VDMEGAPGTLYE--GEKFQLL 57

Query: 83  FDIPITFPTTAPELA-LPELDGKTAKMYRGGKICLS---DHFKPLW 124
           F     +P  +P++    E       +Y  G ICLS   + + P  
Sbjct: 58  FKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPAL 103


>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's
           yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}
          Length = 136

 Score = 24.2 bits (52), Expect = 6.9
 Identities = 9/64 (14%), Positives = 17/64 (26%), Gaps = 2/64 (3%)

Query: 64  WFGSCWFFYNQLKYEFQIEFDIPITFPTTAPELALPELDGKTAKMYRGGKICLSDHFKPL 123
             G     +    Y   I+      +P + P++               G++    H    
Sbjct: 44  ILGPPHSNHENRIYSLSIDC--GPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRD 101

Query: 124 WARN 127
           W R 
Sbjct: 102 WKRA 105


>d1tn3a_ d.169.1.1 (A:) Tetranectin {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 137

 Score = 23.9 bits (50), Expect = 9.5
 Identities = 6/17 (35%), Positives = 9/17 (52%)

Query: 60 EGTKWFGSCWFFYNQLK 76
          +GTK    C+  + Q K
Sbjct: 8  KGTKVHMKCFLAFTQTK 24


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.136    0.431 

Gapped
Lambda     K      H
   0.267   0.0599    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 654,472
Number of extensions: 30720
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 12
Length of query: 166
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 87
Effective length of database: 1,322,926
Effective search space: 115094562
Effective search space used: 115094562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.9 bits)