BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13709
(405 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QUH|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trp
pdb|2QUI|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Tryptophanamide And Atp
pdb|2QUI|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Tryptophanamide And Atp
pdb|2QUJ|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trpamp
pdb|2QUK|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Atp(Putative)
pdb|2QUH|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trp
Length = 477
Score = 577 bits (1486), Expect = e-165, Method: Compositional matrix adjust.
Identities = 269/404 (66%), Positives = 325/404 (80%), Gaps = 9/404 (2%)
Query: 11 PAPT-------VDGEDDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNK 63
PAPT + E+D VDPW V + S G+DYDKLI +FGSSKID ELI R E+ T +
Sbjct: 67 PAPTSNHGPDATEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQ 126
Query: 64 KVHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDV 123
+ HH LRRGIFFSHRDM+ +L+ YE KPF+LYTGRGPSS++MH+GHLIPF+FTKWLQDV
Sbjct: 127 RPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDV 186
Query: 124 FDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPS-- 181
F+VPLVIQ+TDDEK LWK++ ++A A ENAK IIACGF + TFIFSD+D+M S
Sbjct: 187 FNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYMGMSSG 246
Query: 182 FYLNILKIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCL 241
FY N++KIQK V VK IFG D D +GK SFPAIQAAPSFS++FP IF + CL
Sbjct: 247 FYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCL 306
Query: 242 IPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPK 301
IPCAIDQDPYFR+TRDVAP++GY KPAL+HSTFFPALQGA TKMSASD NS+IFLTDT K
Sbjct: 307 IPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAK 366
Query: 302 QVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALL 361
Q+K KVNKHA+SGG+ T+EEHR+ GGNCDVD+++ YLTFFLEDDDKLEQIRK+YTSGA+L
Sbjct: 367 QIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAML 426
Query: 362 TGELKKILIDTITPIVTQHQEAMKGVTEEVLAQYMTPRKLKFDF 405
TGELKK LI+ + P++ +HQ K VT+E++ ++MTPRKL FDF
Sbjct: 427 TGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSFDF 470
>pdb|1ULH|A Chain A, A Short Peptide Insertion Crucial For Angiostatic Activity
Of Human Tryptophanyl-Trna Synthetase
pdb|1ULH|B Chain B, A Short Peptide Insertion Crucial For Angiostatic Activity
Of Human Tryptophanyl-Trna Synthetase
Length = 390
Score = 570 bits (1469), Expect = e-163, Method: Compositional matrix adjust.
Identities = 264/389 (67%), Positives = 319/389 (82%), Gaps = 2/389 (0%)
Query: 19 DDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSHR 78
+D VDPW V + S G+DYDKLI +FGSSKID ELI R E+ T ++ HH LRRGIFFSHR
Sbjct: 1 EDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHR 60
Query: 79 DMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKS 138
DM+ +L+ YE KPF+LYTGRGPSS++MH+GHLIPF+FTKWLQDVF+VPLVIQ+TDDEK
Sbjct: 61 DMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKY 120
Query: 139 LWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPS--FYLNILKIQKLVNGT 196
LWK++ ++A A ENAK IIACGF + TFIFSD+D+M S FY N++KIQK V
Sbjct: 121 LWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFN 180
Query: 197 TVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTR 256
VK IFG D D +GK SFPAIQAAPSFS++FP IF + CLIPCAIDQDPYFR+TR
Sbjct: 181 QVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTR 240
Query: 257 DVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQ 316
DVAP++GY KPAL+HSTFFPALQGA TKMSASD NS+IFLTDT KQ+K KVNKHA+SGG+
Sbjct: 241 DVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGR 300
Query: 317 ATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPI 376
T+EEHR+ GGNCDVD+++ YLTFFLEDDDKLEQIRK+YTSGA+LTGELKK LI+ + P+
Sbjct: 301 DTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPL 360
Query: 377 VTQHQEAMKGVTEEVLAQYMTPRKLKFDF 405
+ +HQ K VT+E++ ++MTPRKL FDF
Sbjct: 361 IAEHQARRKEVTDEIVKEFMTPRKLSFDF 389
>pdb|2AZX|A Chain A, Charged And Uncharged Trnas Adopt Distinct Conformations
When Complexed With Human Tryptophanyl-Trna Synthetase
pdb|2AZX|B Chain B, Charged And Uncharged Trnas Adopt Distinct Conformations
When Complexed With Human Tryptophanyl-Trna Synthetase
Length = 477
Score = 557 bits (1436), Expect = e-159, Method: Compositional matrix adjust.
Identities = 264/404 (65%), Positives = 317/404 (78%), Gaps = 9/404 (2%)
Query: 11 PAPT-------VDGEDDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNK 63
PAPT + E+D VDPW V + S G+DYDKLI +FGSSKID ELI R E+ T +
Sbjct: 67 PAPTSNHGPDATEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQ 126
Query: 64 KVHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDV 123
+ HH LRRGIFFSHRD + +L+ YE KPF+LYTGRGPSS++ H+GHLIPF+FTKWLQDV
Sbjct: 127 RPHHFLRRGIFFSHRDXNQVLDAYENKKPFYLYTGRGPSSEAXHVGHLIPFIFTKWLQDV 186
Query: 124 FDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPS-- 181
F+VPLVIQ TDDEK LWK++ ++A A ENAK IIACGF + TFIFSD+D+ S
Sbjct: 187 FNVPLVIQXTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYXGXSSG 246
Query: 182 FYLNILKIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCL 241
FY N++KIQK V VK IFG D D +GK SFPAIQAAPSFS++FP IF + CL
Sbjct: 247 FYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCL 306
Query: 242 IPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPK 301
IPCAIDQDPYFR TRDVAP++GY KPAL+HSTFFPALQGA TK SASD NS+IFLTDT K
Sbjct: 307 IPCAIDQDPYFRXTRDVAPRIGYPKPALLHSTFFPALQGAQTKXSASDPNSSIFLTDTAK 366
Query: 302 QVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALL 361
Q+K KVNKHA+SGG+ T+EEHR+ GGNCDVD+++ YLTFFLEDDDKLEQIRK+YTSGA L
Sbjct: 367 QIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFXYLTFFLEDDDKLEQIRKDYTSGAXL 426
Query: 362 TGELKKILIDTITPIVTQHQEAMKGVTEEVLAQYMTPRKLKFDF 405
TGELKK LI+ + P++ +HQ K VT+E++ ++ TPRKL FDF
Sbjct: 427 TGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFXTPRKLSFDF 470
>pdb|1R6U|A Chain A, Crystal Structure Of An Active Fragment Of Human
Tryptophanyl-Trna Synthetase With Cytokine Activity
pdb|1R6U|B Chain B, Crystal Structure Of An Active Fragment Of Human
Tryptophanyl-Trna Synthetase With Cytokine Activity
Length = 437
Score = 556 bits (1434), Expect = e-159, Method: Compositional matrix adjust.
Identities = 264/404 (65%), Positives = 317/404 (78%), Gaps = 9/404 (2%)
Query: 11 PAPT-------VDGEDDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNK 63
PAPT + E+D VDPW V + S G+DYDKLI +FGSSKID ELI R E+ T +
Sbjct: 20 PAPTSNHGPDATEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQ 79
Query: 64 KVHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDV 123
+ HH LRRGIFFSHRD + +L+ YE KPF+LYTGRGPSS++ H+GHLIPF+FTKWLQDV
Sbjct: 80 RPHHFLRRGIFFSHRDXNQVLDAYENKKPFYLYTGRGPSSEAXHVGHLIPFIFTKWLQDV 139
Query: 124 FDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPS-- 181
F+VPLVIQ TDDEK LWK++ ++A A ENAK IIACGF + TFIFSD+D+ S
Sbjct: 140 FNVPLVIQXTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYXGXSSG 199
Query: 182 FYLNILKIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCL 241
FY N++KIQK V VK IFG D D +GK SFPAIQAAPSFS++FP IF + CL
Sbjct: 200 FYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCL 259
Query: 242 IPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPK 301
IPCAIDQDPYFR TRDVAP++GY KPAL+HSTFFPALQGA TK SASD NS+IFLTDT K
Sbjct: 260 IPCAIDQDPYFRXTRDVAPRIGYPKPALLHSTFFPALQGAQTKXSASDPNSSIFLTDTAK 319
Query: 302 QVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALL 361
Q+K KVNKHA+SGG+ T+EEHR+ GGNCDVD+++ YLTFFLEDDDKLEQIRK+YTSGA L
Sbjct: 320 QIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFXYLTFFLEDDDKLEQIRKDYTSGAXL 379
Query: 362 TGELKKILIDTITPIVTQHQEAMKGVTEEVLAQYMTPRKLKFDF 405
TGELKK LI+ + P++ +HQ K VT+E++ ++ TPRKL FDF
Sbjct: 380 TGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFXTPRKLSFDF 423
>pdb|1O5T|A Chain A, Crystal Structure Of The Aminoacylation Catalytic Fragment
Of Human Tryptophanyl-Trna Synthetase
Length = 378
Score = 555 bits (1431), Expect = e-158, Method: Compositional matrix adjust.
Identities = 258/377 (68%), Positives = 311/377 (82%), Gaps = 2/377 (0%)
Query: 31 SMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSHRDMHSILNLYEQG 90
S G+DYDKLI +FGSSKID ELI R E+ T ++ HH LRRGIFFSHRDM+ +L+ YE
Sbjct: 1 SAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENK 60
Query: 91 KPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKNIKPEEAKK 150
KPF+LYTGRGPSS++MH+GHLIPF+FTKWLQDVF+VPLVIQ+TDDEK LWK++ ++A
Sbjct: 61 KPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYS 120
Query: 151 LAYENAKAIIACGFKQDSTFIFSDIDFMNPS--FYLNILKIQKLVNGTTVKAIFGLKDFD 208
A ENAK IIACGF + TFIFSD+D+M S FY N++KIQK V VK IFG D D
Sbjct: 121 YAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSD 180
Query: 209 SVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGYVKPA 268
+GK SFPAIQAAPSFS++FP IF + CLIPCAIDQDPYFR+TRDVAP++GY KPA
Sbjct: 181 CIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPA 240
Query: 269 LIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQATVEEHRELGGN 328
L+HSTFFPALQGA TKMSASD NS+IFLTDT KQ+K KVNKHA+SGG+ T+EEHR+ GGN
Sbjct: 241 LLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGN 300
Query: 329 CDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQHQEAMKGVT 388
CDVD+++ YLTFFLEDDDKLEQIRK+YTSGA+LTGELKK LI+ + P++ +HQ K VT
Sbjct: 301 CDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVT 360
Query: 389 EEVLAQYMTPRKLKFDF 405
+E++ ++MTPRKL FDF
Sbjct: 361 DEIVKEFMTPRKLSFDF 377
>pdb|2AKE|A Chain A, Structure Of Human Tryptophanyl-Trna Synthetase In Complex
With Trna(Trp)
pdb|2DR2|A Chain A, Structure Of Human Tryptophanyl-trna Synthetase In Complex
With Trna(trp)
Length = 384
Score = 555 bits (1431), Expect = e-158, Method: Compositional matrix adjust.
Identities = 258/377 (68%), Positives = 311/377 (82%), Gaps = 2/377 (0%)
Query: 31 SMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSHRDMHSILNLYEQG 90
S G+DYDKLI +FGSSKID ELI R E+ T ++ HH LRRGIFFSHRDM+ +L+ YE
Sbjct: 1 SAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENK 60
Query: 91 KPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKNIKPEEAKK 150
KPF+LYTGRGPSS++MH+GHLIPF+FTKWLQDVF+VPLVIQ+TDDEK LWK++ ++A
Sbjct: 61 KPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYS 120
Query: 151 LAYENAKAIIACGFKQDSTFIFSDIDFMNPS--FYLNILKIQKLVNGTTVKAIFGLKDFD 208
A ENAK IIACGF + TFIFSD+D+M S FY N++KIQK V VK IFG D D
Sbjct: 121 YAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSD 180
Query: 209 SVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGYVKPA 268
+GK SFPAIQAAPSFS++FP IF + CLIPCAIDQDPYFR+TRDVAP++GY KPA
Sbjct: 181 CIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPA 240
Query: 269 LIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQATVEEHRELGGN 328
L+HSTFFPALQGA TKMSASD NS+IFLTDT KQ+K KVNKHA+SGG+ T+EEHR+ GGN
Sbjct: 241 LLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGN 300
Query: 329 CDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQHQEAMKGVT 388
CDVD+++ YLTFFLEDDDKLEQIRK+YTSGA+LTGELKK LI+ + P++ +HQ K VT
Sbjct: 301 CDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVT 360
Query: 389 EEVLAQYMTPRKLKFDF 405
+E++ ++MTPRKL FDF
Sbjct: 361 DEIVKEFMTPRKLSFDF 377
>pdb|2QUJ|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trpamp
Length = 384
Score = 555 bits (1430), Expect = e-158, Method: Compositional matrix adjust.
Identities = 258/377 (68%), Positives = 311/377 (82%), Gaps = 2/377 (0%)
Query: 31 SMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSHRDMHSILNLYEQG 90
S G+DYDKLI +FGSSKID ELI R E+ T ++ HH LRRGIFFSHRDM+ +L+ YE
Sbjct: 1 SAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENK 60
Query: 91 KPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKNIKPEEAKK 150
KPF+LYTGRGPSS++MH+GHLIPF+FTKWLQDVF+VPLVIQ+TDDEK LWK++ ++A
Sbjct: 61 KPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYS 120
Query: 151 LAYENAKAIIACGFKQDSTFIFSDIDFMNPS--FYLNILKIQKLVNGTTVKAIFGLKDFD 208
A ENAK IIACGF + TFIFSD+D+M S FY N++KIQK V VK IFG D D
Sbjct: 121 YAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSD 180
Query: 209 SVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGYVKPA 268
+GK SFPAIQAAPSFS++FP IF + CLIPCAIDQDPYFR+TRDVAP++GY KPA
Sbjct: 181 CIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPA 240
Query: 269 LIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQATVEEHRELGGN 328
L+HSTFFPALQGA TKMSASD NS+IFLTDT KQ+K KVNKHA+SGG+ T+EEHR+ GGN
Sbjct: 241 LLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGN 300
Query: 329 CDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQHQEAMKGVT 388
CDVD+++ YLTFFLEDDDKLEQIRK+YTSGA+LTGELKK LI+ + P++ +HQ K VT
Sbjct: 301 CDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVT 360
Query: 389 EEVLAQYMTPRKLKFDF 405
+E++ ++MTPRKL FDF
Sbjct: 361 DEIVKEFMTPRKLSFDF 377
>pdb|1R6T|A Chain A, Crystal Structure Of Human Tryptophanyl-Trna Synthetase
pdb|1R6T|B Chain B, Crystal Structure Of Human Tryptophanyl-Trna Synthetase
Length = 477
Score = 551 bits (1421), Expect = e-157, Method: Compositional matrix adjust.
Identities = 261/400 (65%), Positives = 314/400 (78%), Gaps = 9/400 (2%)
Query: 11 PAPT-------VDGEDDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNK 63
PAPT + E+D VDPW V + S G+DYDKLI +FGSSKID ELI R E+ T +
Sbjct: 67 PAPTSNHGPDATEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQ 126
Query: 64 KVHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDV 123
+ HH LRRGIFFSHRD + +L+ YE KPF+LYTGRGPSS++ H+GHLIPF+FTKWLQDV
Sbjct: 127 RPHHFLRRGIFFSHRDXNQVLDAYENKKPFYLYTGRGPSSEAXHVGHLIPFIFTKWLQDV 186
Query: 124 FDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPS-- 181
F+VPLVIQ TDDEK LWK++ ++A A ENAK IIACGF + TFIFSD+D+ S
Sbjct: 187 FNVPLVIQXTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYXGXSSG 246
Query: 182 FYLNILKIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCL 241
FY N++KIQK V VK IFG D D +GK SFPAIQAAPSFS++FP IF + CL
Sbjct: 247 FYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCL 306
Query: 242 IPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPK 301
IPCAIDQDPYFR TRDVAP++GY KPAL+HSTFFPALQGA TK SASD NS+IFLTDT K
Sbjct: 307 IPCAIDQDPYFRXTRDVAPRIGYPKPALLHSTFFPALQGAQTKXSASDPNSSIFLTDTAK 366
Query: 302 QVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALL 361
Q+K KVNKHA+SGG+ T+EEHR+ GGNCDVD+++ YLTFFLEDDDKLEQIRK+YTSGA L
Sbjct: 367 QIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFXYLTFFLEDDDKLEQIRKDYTSGAXL 426
Query: 362 TGELKKILIDTITPIVTQHQEAMKGVTEEVLAQYMTPRKL 401
TGELKK LI+ + P++ +HQ K VT+E++ ++ TPRKL
Sbjct: 427 TGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFXTPRKL 466
>pdb|3KT0|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet
pdb|3KT3|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT3|B Chain B, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT3|C Chain C, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT3|D Chain D, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT6|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT6|B Chain B, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT6|C Chain C, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT6|D Chain D, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT8|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
pdb|3KT8|B Chain B, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
pdb|3KT8|C Chain C, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
pdb|3KT8|D Chain D, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
Length = 438
Score = 468 bits (1205), Expect = e-132, Method: Compositional matrix adjust.
Identities = 223/394 (56%), Positives = 290/394 (73%), Gaps = 6/394 (1%)
Query: 14 TVDGEDDVVDPWNVTSK-----SMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHL 68
+ D ++ VV PW+V +DYDKLIK+FG+ +++E + RF++VT ++ HH
Sbjct: 19 STDVKEQVVTPWDVEGGVDEQGRAQNIDYDKLIKQFGTKPVNEETLKRFKQVTGREPHHF 78
Query: 69 LRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPL 128
LR+G+FFS RD IL+LYEQGKPFFLYTGRGPSSDSMHLGH+IPF+FTKWLQ+VFDVPL
Sbjct: 79 LRKGLFFSERDFTKILDLYEQGKPFFLYTGRGPSSDSMHLGHMIPFVFTKWLQEVFDVPL 138
Query: 129 VIQLTDDEKSLWKN-IKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPSFYLNIL 187
VI+LTDDEK L+K+ + + K A ENAK IIA GF +TFIFSD+ +M +FY ++
Sbjct: 139 VIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFSDLQYMGGAFYETVV 198
Query: 188 KIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAID 247
++ + + G+T KA+FG D D +GKF F +IQ A +F S+FP + K PCLIPCAID
Sbjct: 199 RVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAID 258
Query: 248 QDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKV 307
QDPYFR+ RDVA KL Y KPAL+HS FFPALQG+ TKMSASD +AIF+TDTPKQ++ K+
Sbjct: 259 QDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIFMTDTPKQIQKKI 318
Query: 308 NKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKK 367
NK+A+SGGQ + + HRELGGN DVD+AYQYL+FF +DD L++ Y SG LL+GE+KK
Sbjct: 319 NKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGELLSGEMKK 378
Query: 368 ILIDTITPIVTQHQEAMKGVTEEVLAQYMTPRKL 401
+ I+T+ V QE V EE L ++M P KL
Sbjct: 379 LCIETLQEFVKAFQERRAQVDEETLDKFMVPHKL 412
>pdb|2IP1|A Chain A, Crystal Structure Analysis Of S. Cerevisiae Tryptophanyl
Trna Synthetase
Length = 432
Score = 468 bits (1205), Expect = e-132, Method: Compositional matrix adjust.
Identities = 223/394 (56%), Positives = 290/394 (73%), Gaps = 6/394 (1%)
Query: 14 TVDGEDDVVDPWNVTSK-----SMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHL 68
+ D ++ VV PW+V +DYDKLIK+FG+ +++E + RF++VT ++ HH
Sbjct: 19 STDVKEQVVTPWDVEGGVDEQGRAQNIDYDKLIKQFGTKPVNEETLKRFKQVTGREPHHF 78
Query: 69 LRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPL 128
LR+G+FFS RD IL+LYEQGKPFFLYTGRGPSSDSMHLGH+IPF+FTKWLQ+VFDVPL
Sbjct: 79 LRKGLFFSERDFTKILDLYEQGKPFFLYTGRGPSSDSMHLGHMIPFVFTKWLQEVFDVPL 138
Query: 129 VIQLTDDEKSLWKN-IKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPSFYLNIL 187
VI+LTDDEK L+K+ + + K A ENAK IIA GF +TFIFSD+ +M +FY ++
Sbjct: 139 VIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFSDLQYMGGAFYETVV 198
Query: 188 KIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAID 247
++ + + G+T KA+FG D D +GKF F +IQ A +F S+FP + K PCLIPCAID
Sbjct: 199 RVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAID 258
Query: 248 QDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKV 307
QDPYFR+ RDVA KL Y KPAL+HS FFPALQG+ TKMSASD +AIF+TDTPKQ++ K+
Sbjct: 259 QDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIFMTDTPKQIQKKI 318
Query: 308 NKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKK 367
NK+A+SGGQ + + HRELGGN DVD+AYQYL+FF +DD L++ Y SG LL+GE+KK
Sbjct: 319 NKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGELLSGEMKK 378
Query: 368 ILIDTITPIVTQHQEAMKGVTEEVLAQYMTPRKL 401
+ I+T+ V QE V EE L ++M P KL
Sbjct: 379 LCIETLQEFVKAFQERRAQVDEETLDKFMVPHKL 412
>pdb|3HV0|A Chain A, Tryptophanyl-Trna Synthetase From Cryptosporidium Parvum
pdb|3HV0|B Chain B, Tryptophanyl-Trna Synthetase From Cryptosporidium Parvum
Length = 393
Score = 444 bits (1143), Expect = e-125, Method: Compositional matrix adjust.
Identities = 202/373 (54%), Positives = 282/373 (75%), Gaps = 2/373 (0%)
Query: 24 PWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSHRDMHSI 83
PW V + + G+DY+KLI KFG I ++I R E++T +K HH RR IF SHRD I
Sbjct: 6 PWEVKADNAYGIDYNKLIDKFGCKLITKDMIERMERLTGQKAHHFFRRNIFLSHRDFEKI 65
Query: 84 LNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWK-N 142
L++YE+G+ F+LYTGRGPSS+S+H+GHL+PF+FTK+LQD F VPLVIQLTDDEK ++K N
Sbjct: 66 LDVYEKGELFYLYTGRGPSSESLHVGHLVPFLFTKYLQDTFKVPLVIQLTDDEKFIFKSN 125
Query: 143 IKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPSFYLNILKIQKLVNGTTVKAIF 202
+ EE AYEN K IIACGF + TFIF++++++ Y +IL+I+K ++ + +K+IF
Sbjct: 126 LTLEETHNYAYENMKDIIACGFDPELTFIFTNLEYI-AELYPDILRIEKKISCSQIKSIF 184
Query: 203 GLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKL 262
G KD +VGKF+FPA+QAAP+FSS+FP IF + CL+P AIDQDPYFR+ RDVAP+L
Sbjct: 185 GFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRDVAPRL 244
Query: 263 GYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQATVEEH 322
GY+KP+ IHS F P+LQG+ TKMSAS NS+IF+ D + ++NK+ K+A+SGGQAT EE
Sbjct: 245 GYLKPSSIHSIFLPSLQGSQTKMSASVQNSSIFVNDNEESIRNKIMKYAFSGGQATEEEQ 304
Query: 323 RELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQHQE 382
R LG N DVD+++QYL F +EDD+KLE+I K Y+SG +L+GE+K IL+ + + HQ+
Sbjct: 305 RRLGANLDVDVSWQYLRFLMEDDEKLEEIGKKYSSGEMLSGEIKSILVQELVKLTKNHQK 364
Query: 383 AMKGVTEEVLAQY 395
+ + ++V+A++
Sbjct: 365 NREAINDDVIAKF 377
>pdb|3I05|A Chain A, Tryptophanyl-Trna Synthetase From Trypanosoma Brucei
pdb|3I05|B Chain B, Tryptophanyl-Trna Synthetase From Trypanosoma Brucei
Length = 395
Score = 437 bits (1125), Expect = e-123, Method: Compositional matrix adjust.
Identities = 215/382 (56%), Positives = 277/382 (72%), Gaps = 7/382 (1%)
Query: 19 DDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSHR 78
+ VV PW+V V+YDKLIK FGS ID+ L+ R E+V KK HH LRRGIFFSHR
Sbjct: 9 EAVVTPWSVEGD----VNYDKLIKDFGSHAIDEALLERIERVLGKKPHHFLRRGIFFSHR 64
Query: 79 DMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKS 138
D++ +L++YE G+PF+LYTGRGPSS+SMH+GHLIPFMFTKWLQD F VPLVIQ+TDDEK
Sbjct: 65 DLNLLLDVYESGQPFYLYTGRGPSSESMHMGHLIPFMFTKWLQDSFRVPLVIQMTDDEKF 124
Query: 139 LWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPSFYLNILKIQKLVNGTTV 198
++NI E+ + + EN K IIA GF + TFIF D D+M Y + KI++ + V
Sbjct: 125 YFRNIPMEQVEAMTTENIKDIIAMGFDPELTFIFRDFDYMG-CMYRTVAKIERAFTASQV 183
Query: 199 KAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNH-KVPCLIPCAIDQDPYFRLTRD 257
+ FG D+ G++ FPAIQAAPSFS+ FP IF + V CLIP AIDQDPYFRLTRD
Sbjct: 184 RGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYFRLTRD 243
Query: 258 VAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQA 317
+AP+LGY+KPA+IHS FFP L G KMS+S +A+ LTDT K VK+K+NKHA+SGG A
Sbjct: 244 IAPRLGYLKPAVIHSKFFPGLSGPKGKMSSSS-GTAVLLTDTEKMVKDKINKHAFSGGGA 302
Query: 318 TVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPIV 377
T +EH LG N +VD+ Q+L+FFLEDD++L +++K Y G ++TGE+KK+LI+TIT I
Sbjct: 303 TKQEHFLLGANVEVDVPIQWLSFFLEDDEELARVKKEYMLGRIMTGEVKKLLINTITAIT 362
Query: 378 TQHQEAMKGVTEEVLAQYMTPR 399
HQE K VT+E + + + R
Sbjct: 363 KTHQEKRKLVTDEDVQLFTSTR 384
>pdb|3TZE|A Chain A, Crystal Structure Of A Tryptophanyl-Trna Synthetase From
Encephalitozoon Cuniculi Bound To Tryptophan
pdb|3TZE|B Chain B, Crystal Structure Of A Tryptophanyl-Trna Synthetase From
Encephalitozoon Cuniculi Bound To Tryptophan
Length = 406
Score = 342 bits (877), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 167/384 (43%), Positives = 243/384 (63%), Gaps = 8/384 (2%)
Query: 22 VDPWNV----TSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSH 77
+ PW+V T + +DYDK+I +FG K + L R EK++ K H+ RRGI F+H
Sbjct: 27 ITPWDVEVVSTDEVPVAIDYDKIINQFGCEKFNQALADRLEKLSGKPAHYFFRRGIVFAH 86
Query: 78 RDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEK 137
RD + +L+ +PF+LYTGRGPSS +MH+GH IPF+ K++QD F + LVIQ+TDDEK
Sbjct: 87 RDFNLLLDEIANNRPFYLYTGRGPSSKTMHIGHTIPFLLCKYMQDAFKIRLVIQITDDEK 146
Query: 138 SLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPSFYLNILKIQKLVNGTT 197
LWK+++ E+A EN K I+ GF T+IFS+++ + F NILKI K +N
Sbjct: 147 FLWKSMRLEDAMAYGRENIKDIVTLGFDPKLTYIFSNVE-ASHHFEENILKISKTINLNE 205
Query: 198 VKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRD 257
+FG ++G+ FPA + AP FSS+F I CL+P A+DQDP+FRL RD
Sbjct: 206 AIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFI---GKGAMCLVPAAVDQDPFFRLARD 262
Query: 258 VAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQA 317
A LG KP+ I+ + P L+G N KMSASD NS+I+L D ++ K+ +AYSGG+
Sbjct: 263 KAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLDDAQDTIRKKIIAYAYSGGRK 322
Query: 318 TVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPIV 377
T+EEHRE GG+ DVD+ ++YL +FL+DD +LE+ R Y G + + E+K+ + I V
Sbjct: 323 TLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGYIKGEITSKEMKEKCVVVIQEFV 382
Query: 378 TQHQEAMKGVTEEVLAQYMTPRKL 401
+++QE+ K VT++ L ++ K
Sbjct: 383 SRYQESRKRVTDDDLRAFIDINKF 406
>pdb|3FOC|A Chain A, Tryptophanyl-Trna Synthetase From Giardia Lamblia
pdb|3FOC|B Chain B, Tryptophanyl-Trna Synthetase From Giardia Lamblia
Length = 451
Score = 317 bits (813), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 165/413 (39%), Positives = 245/413 (59%), Gaps = 50/413 (12%)
Query: 40 LIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGR 99
+I +FG++ I D+L+ RFE VT K H +LRRG+F++HRD L+ YE+G P ++YTGR
Sbjct: 39 IITRFGAAPITDDLLKRFETVTGTKAHPMLRRGLFYAHRDFEEFLSYYEKGHPIYIYTGR 98
Query: 100 GPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLW-KNIKPEEAKKLAYENAKA 158
GPSS ++HLGHL+PF+FTK+LQD F +VIQ+TDDEK L +++ E EN K
Sbjct: 99 GPSSGALHLGHLLPFIFTKYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKD 158
Query: 159 IIACGFKQDSTFIFSDIDFMN-PSFYLNILKIQKLVNGTTVKAIFGLKDFDSVGKFSFPA 217
IIACGF D TFIF + +++ + Y + +++ + ++A FG + +VG +FP
Sbjct: 159 IIACGFDPDKTFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFGFSNDANVGYAAFPP 218
Query: 218 IQAAPSFSSTF--------PL-------------------------------------IF 232
Q P +S+ F PL +F
Sbjct: 219 KQMLPVYSTYFDGLPFTRVPLPVGTGNEDAADAVSTKKASKKTPKKDAVLSPVHVVEELF 278
Query: 233 ---NKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASD 289
+ K CLI I+QDPYFRL RD+AP++G+ K A + F P LQG+ TKMSASD
Sbjct: 279 PDSKRYQKAMCLIASGIEQDPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASD 338
Query: 290 LNSAIFLTDTPKQVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLE 349
NSAI+LTDTP Q+KNK+N++A+SGG+ T EEHR G + VD++ +YL F++DD +LE
Sbjct: 339 PNSAIYLTDTPAQIKNKINRYAFSGGRDTEEEHRAFGADLSVDVSVRYLEVFMKDDAELE 398
Query: 350 QIRKNYTSGALLTGELKKILIDTITPIVTQHQEAMKGVTEEVLAQYMTPRKLK 402
+++ +Y +G LLTGE+K LI + ++ +H E V ++ + ++L+
Sbjct: 399 KLKADYKTGKLLTGEVKATLIGILQGLIKEHAERRDKVDTTMIESFTVKKELQ 451
>pdb|3JXE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii
Tryptophanyl-Trna Synthetase In Complex With Trpamp
pdb|3JXE|B Chain B, Crystal Structure Of Pyrococcus Horikoshii
Tryptophanyl-Trna Synthetase In Complex With Trpamp
Length = 392
Score = 296 bits (759), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 166/372 (44%), Positives = 226/372 (60%), Gaps = 23/372 (6%)
Query: 18 EDDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSH 77
E+ V PW V VDYDKLIK FG+S + ++L+ + ++T ++ RR FFSH
Sbjct: 3 EEFKVTPWEVEG----VVDYDKLIKHFGTSPLTEDLLEKTAELTKSELPIFFRRKFFFSH 58
Query: 78 RDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEK 137
RD IL YE+G+ FFLYTGRGPS MH+GH+IPF TKWLQ+ F V L IQ+TDDEK
Sbjct: 59 RDYDLILKDYEEGRGFFLYTGRGPSG-PMHIGHIIPFFATKWLQEKFGVNLYIQITDDEK 117
Query: 138 SLWK-NIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPSFYLNILKIQKLVNGT 196
L+K N+ ++ K+ AY+N IIA GF D TFIF + +F Y + I K +N +
Sbjct: 118 FLFKENLTFDDTKRWAYDNILDIIAVGFDPDKTFIFQNSEFTK--IYEMAIPIAKKINFS 175
Query: 197 TVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTR 256
KA+FG + +G FPAIQ AP+F F + CLIP AIDQDPY+RL R
Sbjct: 176 MAKAVFGFTEQSKIGMIFFPAIQIAPTF-------FERKR---CLIPAAIDQDPYWRLQR 225
Query: 257 DVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQ 316
D A LGY K A +HS F P+L + KMSAS +AI+LTD+P+ V+ KV K +GG+
Sbjct: 226 DFAESLGYYKTAALHSKFVPSLTSLSGKMSASKPETAIYLTDSPEDVEKKVWKFTLTGGR 285
Query: 317 ATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTS---GALLTGELKKILIDTI 373
T++E RE GG + + +++L F E+DDK ++++ Y + G L GE K+ LI I
Sbjct: 286 PTLKEQREKGGEPEKCVVFKWLEIFFEEDDK--KLKERYYACKNGELTCGECKRYLISKI 343
Query: 374 TPIVTQHQEAMK 385
+ +HQ K
Sbjct: 344 QEFLKEHQRRRK 355
>pdb|3HZR|A Chain A, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|B Chain B, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|C Chain C, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|D Chain D, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|E Chain E, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|F Chain F, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
Length = 386
Score = 215 bits (548), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 118/366 (32%), Positives = 199/366 (54%), Gaps = 5/366 (1%)
Query: 36 DYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSHRDMHSILNLYEQGKPFFL 95
DY++LI G + I + I R EK++ K HH L RG+F + + + L+ E KP F+
Sbjct: 26 DYNQLINSVGINAITPQQIQRIEKLSGKAPHHYLSRGVFLAEKSLDKFLDDVEAKKPTFI 85
Query: 96 YTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYEN 155
+ + P + + L I F ++LQD F++ ++IQ+ DD K L + EA K++ +
Sbjct: 86 FIQKYPQKE-VALEEYITLEFARYLQDAFNIQVIIQILDDIKVLNREATINEASKMSNDL 144
Query: 156 AKAIIACGFKQDSTFIFSDIDFMNPSFYLNILKIQKLVNGTTVKAIFGLKDFDSVGKFSF 215
K I+A GF +D TFI++D + Y I ++K V+ F + D++GK +
Sbjct: 145 MKYILAFGFNEDKTFIYTDYQYFG-KMYRTISLVEKATAYNVVQPFFNFEYSDNIGKLAS 203
Query: 216 PAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFF 275
P+I A FS ++ F+ + CL+ +I + + +A L +++P ++
Sbjct: 204 PSIMTASMFSQSYSHFFSSPAR--CLVLDSIKNVQFHSIIDQIATTLNFIQPTVLFHKMV 261
Query: 276 PALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAY 335
P L G SD NS I L+D KQV+ K+NK A+SGG+ T EEH++LGG CD+D+++
Sbjct: 262 PLLSGVTKFDIPSDHNS-ILLSDNAKQVERKINKLAFSGGRNTTEEHKKLGGQCDIDVSF 320
Query: 336 QYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQHQEAMKGVTEEVLAQY 395
Q L F D+ +++ + + Y+ G LL+GELKKI+ ++ + + K +T L Y
Sbjct: 321 QLLNIFSSDNAQVKDVEEKYSKGELLSGELKKIVSASMKDFIVAYDAKKKPITTAYLKAY 380
Query: 396 MTPRKL 401
++ K
Sbjct: 381 ISKTKF 386
>pdb|3A04|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Hyperthermophilic Archaeon, Aeropyrum Pernix K1
pdb|3A05|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Hyperthermophilic Archaeon, Aeropyrum Pernix K1 Complex
With Tryptophan
Length = 372
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 117/371 (31%), Positives = 172/371 (46%), Gaps = 26/371 (7%)
Query: 22 VDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSHRDMH 81
+DPW DYD+L++ FG E++ K + L+RRGI F HRD
Sbjct: 6 LDPWGAVEIK----DYDRLLRTFGIRPFS-EVLPLLRK-AGMEPSFLMRRGIIFGHRDFD 59
Query: 82 SILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQ-DVFDVPLVIQLTDDEKSLW 140
IL +G+ + TG PS H GH + +LQ + F V + + D E
Sbjct: 60 KILEAKARGERVAVLTGFMPSG-KFHFGHKLTVDQLIYLQKNGFKV--FVAIADAEAFAV 116
Query: 141 KNIKPEEAKKLAYENAKA-IIACGFKQDSTFIFSDIDFMNPSFYLNILKIQKLVNGTTVK 199
+ I EEA ++A E A +IA G T + + P F L L K V ++
Sbjct: 117 RRIGREEAVRIAVEEYIANMIALGLDPKDTEFYFQTNRGTPYFRLIQLFSGK-VTAAEME 175
Query: 200 AIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVA 259
AI+G + K QAA H V +P DQDP+ RLTRD+A
Sbjct: 176 AIYGEL---TPAKMMASLTQAADILHVQLDEYGGYRHVV---VPVGADQDPHLRLTRDLA 229
Query: 260 PKLGYV----KPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGG 315
++ V +PA + P L G KMS+S +S IFLTD P+ +NK+ + A +GG
Sbjct: 230 DRMAGVVELERPASTYHKLQPGLDG--RKMSSSRPDSTIFLTDPPEVARNKLFR-ALTGG 286
Query: 316 QATVEEHRELGGNCDVDIAYQY-LTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTIT 374
+AT EE R LGG +V Y L + DD +++ I + G +L GE K+I + +
Sbjct: 287 RATAEEQRRLGGVPEVCSVYHMDLYHLMPDDGEVKHIYTSCRLGKILCGECKQIAWEKLE 346
Query: 375 PIVTQHQEAMK 385
+ +HQ ++
Sbjct: 347 RFLAEHQSRLE 357
>pdb|1YI8|B Chain B, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YI8|A Chain A, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YI8|C Chain C, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YIA|B Chain B, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YIA|A Chain A, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YIA|C Chain C, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YID|B Chain B, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp.
pdb|1YID|A Chain A, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp.
pdb|1YID|C Chain C, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp
Length = 351
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 80/310 (25%), Positives = 130/310 (41%), Gaps = 44/310 (14%)
Query: 95 LYTGRGPSSDSMHLGHLIPFMFTK-WLQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAY 153
+ TG P+ ++HLGHL + + LQD + L + L D + +PE+ ++
Sbjct: 25 VLTGDRPTG-ALHLGHLAGSLQNRVRLQD--EAELFVLLADVQALTDHFDRPEQVRENVL 81
Query: 154 ENAKAIIACGF--KQDSTFIFSDIDFMNP--SFYLNILKIQKLVNGTTVKAIFGLKDFDS 209
A +A G ++ + + S + + ++LN++ + L TVKA K +
Sbjct: 82 AVALDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGE 141
Query: 210 ---VGKFSFPAIQAA--PSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDV------ 258
G F +P QAA +F +T L+P DQ P TR++
Sbjct: 142 RVPAGFFVYPVSQAADIAAFGAT-------------LVPVGDDQLPMLEQTREIVRRFNA 188
Query: 259 --APKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQ 316
AP L + L P L G KMS S L +AI L D+ +V KV G
Sbjct: 189 LYAPVLAEPQAQLSRVPRLPGLDG-QAKMSKS-LGNAIALGDSADEVARKVMGMYTDPGH 246
Query: 317 ATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILID----T 372
+ + GN + +L F D +++ ++ Y +G L ++KK LID
Sbjct: 247 LRASDPGRVEGNP----VFTFLDAFDPDPARVQALKDQYRAGGLGDVKVKKHLIDVLNGV 302
Query: 373 ITPIVTQHQE 382
+ PI T+ E
Sbjct: 303 LAPIRTRRAE 312
>pdb|2A4M|A Chain A, Structure Of Trprs Ii Bound To Atp
pdb|2A4M|B Chain B, Structure Of Trprs Ii Bound To Atp
pdb|2A4M|C Chain C, Structure Of Trprs Ii Bound To Atp
Length = 331
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 80/310 (25%), Positives = 130/310 (41%), Gaps = 44/310 (14%)
Query: 95 LYTGRGPSSDSMHLGHLIPFMFTK-WLQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAY 153
+ TG P+ ++HLGHL + + LQD + L + L D + +PE+ ++
Sbjct: 5 VLTGDRPTG-ALHLGHLAGSLQNRVRLQD--EAELFVLLADVQALTDHFDRPEQVRENVL 61
Query: 154 ENAKAIIACGF--KQDSTFIFSDIDFMNP--SFYLNILKIQKLVNGTTVKAIFGLKDFDS 209
A +A G ++ + + S + + ++LN++ + L TVKA K +
Sbjct: 62 AVALDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGE 121
Query: 210 ---VGKFSFPAIQAA--PSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDV------ 258
G F +P QAA +F +T L+P DQ P TR++
Sbjct: 122 RVPAGFFVYPVSQAADIAAFGAT-------------LVPVGDDQLPMLEQTREIVRRFNA 168
Query: 259 --APKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQ 316
AP L + L P L G KMS S L +AI L D+ +V KV G
Sbjct: 169 LYAPVLAEPQAQLSRVPRLPGLDG-QAKMSKS-LGNAIALGDSADEVARKVMGMYTDPGH 226
Query: 317 ATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILID----T 372
+ + GN + +L F D +++ ++ Y +G L ++KK LID
Sbjct: 227 LRASDPGRVEGNP----VFTFLDAFDPDPARVQALKDQYRAGGLGDVKVKKHLIDVLNGV 282
Query: 373 ITPIVTQHQE 382
+ PI T+ E
Sbjct: 283 LAPIRTRRAE 292
>pdb|2CYB|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Archaeoglobus Fulgidus
pdb|2CYB|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Archaeoglobus Fulgidus
Length = 323
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 126/291 (43%), Gaps = 45/291 (15%)
Query: 96 YTGRGPSSDSMHLGHLIPFMFTKWLQDV-FDVPLVIQLTDDEKSLWKNIKPEEAKKLAYE 154
Y G PS + +HLGH++ LQ+ F++ ++ L D L + EE ++A
Sbjct: 36 YVGYEPSGE-IHLGHMMTVQKLMDLQEAGFEI--IVLLADIHAYLNEKGTFEEIAEVADY 92
Query: 155 NAKAIIACGFKQD-STFIFSDIDFMNPSFYLNILKIQKLVN----GTTVKAIFGLKDFDS 209
N K IA G + + F+ ++ + L++LK+ ++ ++ + K+
Sbjct: 93 NKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSRRKEDPM 152
Query: 210 VGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGYVKPAL 269
V + +P +QA + H L IDQ L R+ P+LGY P
Sbjct: 153 VSQMIYPLMQA-----------LDIAHLGVDLAVGGIDQRKIHMLARENLPRLGYSSPVC 201
Query: 270 IHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQATVEEHRELGGNC 329
+H+ L G KMS+S N I + D P++V+ K+ K G VEE N
Sbjct: 202 LHTPILVGLDG--QKMSSSKGNY-ISVRDPPEEVERKIRKAYCPAG--VVEE------NP 250
Query: 330 DVDIA-YQYLTFF----LEDDDK---------LEQIRKNYTSGALLTGELK 366
+DIA Y L F +E D K E++ +++ SG L +LK
Sbjct: 251 ILDIAKYHILPRFGKIVVERDAKFGGDVEYASFEELAEDFKSGQLHPLDLK 301
>pdb|2CYA|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase From
Aeropyrum Pernix
Length = 364
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 98/253 (38%), Gaps = 54/253 (21%)
Query: 167 DSTFIFSDIDFMNPSFYLNILKIQKLVNGTTVKAIFGLKDFDS---VGKFSFPAIQAAPS 223
D+ + SD D+ + + K L I G + ++ K +P +Q +
Sbjct: 116 DAEELASDKDYWG--LVIRVAKRASLARVRRALTIMGRRAEEAEVDASKLIYPLMQVSDI 173
Query: 224 FSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQG--- 280
F + +DQ L RDVA KLG KP IH+ +LQG
Sbjct: 174 FYMDLDIALG-----------GMDQRKAHMLARDVAEKLGRKKPVAIHTPIISSLQGPGR 222
Query: 281 ------------ANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQATVEEHRELGGN 328
A KMS S +A+F+ D+ ++ K+ K AY + ++ GN
Sbjct: 223 MEASQGEIDDVLAEVKMSKSKPETAVFVVDSDDDIRRKIRK-AYCPAK-------QVQGN 274
Query: 329 CDVDIAYQYL----TFFLEDDD-----------KLEQIRKNYTSGALLTGELKKILIDTI 373
++IA L F L D E++ ++YT G L +LK + +++
Sbjct: 275 PVLEIARYILFARDGFTLRVDRPAKYGGPVEYTSYEELERDYTDGRLHPLDLKNAVAESL 334
Query: 374 TPIVTQHQEAMKG 386
+V + A+ G
Sbjct: 335 IEVVRPIRGAVLG 347
>pdb|2DLC|X Chain X, Crystal Structure Of The Ternary Complex Of Yeast
Tyrosyl-Trna Synthetase
Length = 394
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 245 AIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPAL-QGANTKMSASDLNSAIFLTDTPKQV 303
+DQ F L + P LGY K A + + P L QG KMSASD NS I L + PKQV
Sbjct: 189 GVDQRKIFVLAEENLPSLGYKKRAHLMNPMVPGLAQGG--KMSASDPNSKIDLLEEPKQV 246
Query: 304 KNKVNKHAYSGGQATVEEH 322
K K+N S G VEE+
Sbjct: 247 KKKINSAFCSPG--NVEEN 263
>pdb|2J5B|A Chain A, Structure Of The Tyrosyl Trna Synthetase From Acanthamoeba
Polyphaga Mimivirus Complexed With Tyrosynol
pdb|2J5B|B Chain B, Structure Of The Tyrosyl Trna Synthetase From Acanthamoeba
Polyphaga Mimivirus Complexed With Tyrosynol
Length = 348
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 100/241 (41%), Gaps = 34/241 (14%)
Query: 86 LYEQGKPFFLYTGRGPSSDSMHLGH-LIPFMFTKWLQDVFDVPLVIQLTD--DEKSLWKN 142
L + G+ F Y G PS +H+ LI M T + + ++I + D + +L N
Sbjct: 34 LVDSGRIFTAYNGFEPSG-RIHIAQALITVMNTNNMIECGG-QMIIYIADWFAKMNLKMN 91
Query: 143 IKPEEAKKLAYENAKAIIACGFKQDST-FIF-SDIDFMNPSFYLNILKIQKLVNGTTVK- 199
+ ++L + ACG D T FI+ S+ NPS+ +L I + + VK
Sbjct: 92 GDINKIRELGRYFIEVFKACGINLDGTRFIWASEFIASNPSYIERMLDIAEFSTISRVKR 151
Query: 200 --AIFGLKDFDSV--GKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIP-----C--AIDQ 248
I G + D + + +P +QAA F L+P C IDQ
Sbjct: 152 CCQIMGRNESDCLKASQIFYPCMQAADVFE---------------LVPEGIDICQLGIDQ 196
Query: 249 DPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVN 308
L + A G P + +L G KMS SD AIF+ DT ++V K++
Sbjct: 197 RKVNMLAIEYANDRGLKIPISLSHHMLMSLSGPKKKMSKSDPQGAIFMDDTEQEVSEKIS 256
Query: 309 K 309
+
Sbjct: 257 R 257
>pdb|1JII|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb-219383
pdb|1JIJ|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb-239629
pdb|1JIK|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb-243545
pdb|1JIL|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb284485
Length = 420
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 60 VTNKKVHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKW 119
+TN + L RG+ + D I +L + + LY G P++DS+H+GHL+PF+ +
Sbjct: 1 MTNVLIEDLKWRGLIYQQTDEQGIEDLLNK-EQVTLYCGADPTADSLHIGHLLPFLTLRR 59
Query: 120 LQDVFDVPLVI 130
Q+ P+V+
Sbjct: 60 FQEHGHRPIVL 70
>pdb|1X8X|A Chain A, Tyrosyl T-Rna Synthetase From E.Coli Complexed With
Tyrosine
Length = 322
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 65 VHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVF 124
+ L RG+ D ++ QG P LY G P++DS+HLGHL+P + K Q
Sbjct: 7 IKQLQERGLVAQVTDEEALAERLAQG-PIALYCGFDPTADSLHLGHLVPLLCLKRFQQAG 65
Query: 125 DVPLVI 130
P+ +
Sbjct: 66 HKPVAL 71
>pdb|1VBM|A Chain A, Crystal Structure Of The Escherichia Coli Tyrosyl-Trna
Synthetase Complexed With Tyr-Ams
pdb|1VBM|B Chain B, Crystal Structure Of The Escherichia Coli Tyrosyl-Trna
Synthetase Complexed With Tyr-Ams
Length = 318
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 65 VHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVF 124
+ L RG+ D ++ QG P LY G P++DS+HLGHL+P + K Q
Sbjct: 3 IKQLQERGLVAQVTDEEALAERLAQG-PIALYCGFDPTADSLHLGHLVPLLCLKRFQQAG 61
Query: 125 DVPLVI 130
P+ +
Sbjct: 62 HKPVAL 67
>pdb|1I6M|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
pdb|1M83|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In A Closed, Pre-Transition State
Conformation
pdb|1MAU|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp And Tryptophanamide In A
Pre-Transition State Conformation
pdb|1MAW|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|E Chain E, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|F Chain F, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MB2|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|E Chain E, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|F Chain F, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|2OV4|A Chain A, Crystal Structure Of B. Stearothermophilus Tryptophanyl
Trna Synthetase In Complex With Adenosine Tetraphosphate
Length = 328
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/266 (22%), Positives = 115/266 (43%), Gaps = 37/266 (13%)
Query: 138 SLWKNIKPEEAKKLAYENAKAIIACGF--KQDSTFIFSDIDFMNPSFYL--NILKIQKLV 193
++W++ P E ++ A +A G Q + FI S++ + ++ I+ I +L
Sbjct: 46 TVWQD--PHELRQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELE 103
Query: 194 NGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFR 253
T K K+ S G ++P + AA L++N + ++P DQ +
Sbjct: 104 RMTQFKEKSAGKEAVSAGLLTYPPLMAADI------LLYNTD-----IVPVGEDQKQHIE 152
Query: 254 LTRDVAPKLG--YVKPALIHSTFFP-------ALQGANTKMSASDLNSAIFLT--DTPKQ 302
LTRD+A + Y + I P +L KMS SD N ++T D K
Sbjct: 153 LTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKT 212
Query: 303 VKNKVNKHAYSGGQATVEEHRELG-GNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSG--A 359
++ K+ K A + + T+ +E G ++ Y L+ +E++ + Y
Sbjct: 213 IEKKI-KSAVTDSEGTIRYDKEAKPGISNLLNIYSTLS-----GQSIEELERQYEGKGYG 266
Query: 360 LLTGELKKILIDTITPIVTQHQEAMK 385
+ +L +++I+T+ PI ++ M+
Sbjct: 267 VFKADLAQVVIETLRPIQERYHHWME 292
>pdb|1WQ4|A Chain A, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Complexed
With L- Tyrosine
Length = 321
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 65 VHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVF 124
+ L RG+ D ++ QG P L G P++DS+HLGHL+P + K Q
Sbjct: 6 IKQLQERGLVAQVTDEEALAERLAQG-PIALVCGFDPTADSLHLGHLVPLLCLKRFQQAG 64
Query: 125 DVPLVI 130
P+ +
Sbjct: 65 HKPVAL 70
>pdb|1VBN|A Chain A, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Complexed
With Tyr-Ams
pdb|1VBN|B Chain B, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Complexed
With Tyr-Ams
Length = 318
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 65 VHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVF 124
+ L RG+ D ++ QG P L G P++DS+HLGHL+P + K Q
Sbjct: 3 IKQLQERGLVAQVTDEEALAERLAQG-PIALVCGFDPTADSLHLGHLVPLLCLKRFQQAG 61
Query: 125 DVPLVI 130
P+ +
Sbjct: 62 HKPVAL 67
>pdb|1WQ3|A Chain A, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Comlexed
With 3-Iodo- L-Tyrosine
pdb|2YXN|A Chain A, Structual Basis Of Azido-Tyrosine Recognition By
Engineered Bacterial Tyrosyl-Trna Synthetase
Length = 322
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 65 VHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVF 124
+ L RG+ D ++ QG P L G P++DS+HLGHL+P + K Q
Sbjct: 7 IKQLQERGLVAQVTDEEALAERLAQG-PIALVCGFDPTADSLHLGHLVPLLCLKRFQQAG 65
Query: 125 DVPLVI 130
P+ +
Sbjct: 66 HKPVAL 71
>pdb|2G36|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase (Ec
6.1.1.2) (Tryptophan-Trna Ligase)(Trprs) (Tm0492) From
Thermotoga Maritima At 2.50 A Resolution
Length = 340
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/231 (18%), Positives = 94/231 (40%), Gaps = 29/231 (12%)
Query: 156 AKAIIACGFKQDSTFIFSDIDFMNP-------SFYLNILKIQKLVNGTTVKAIFGLKDFD 208
+ +ACG + + IF S +++ +++++ +K+ KD
Sbjct: 75 VRGFLACGIDPEKSVIFVQSGVKEHAELALLFSMIVSVSRLERVPTYKEIKSELNYKDLS 134
Query: 209 SVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGYV--- 265
+ G +P +QAA LI+ +P DQ + LTR++A + Y+
Sbjct: 135 TAGFLIYPVLQAADI------LIYKAEG-----VPVGEDQVYHIELTREIARRFNYLYDE 183
Query: 266 ---KPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQATVEEH 322
+P I S P L G + + + + I L + K+++ + + +
Sbjct: 184 VFPEPEAILSR-VPKLPGTDGRKMSKSYGNIINLEISEKELEQTILRMMTDPARV----R 238
Query: 323 RELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTI 373
R GN + ++Y F +++ + + + T+ ++ + KK+L+ +
Sbjct: 239 RSDPGNPENCPVWKYHQAFDISEEESKWVWEGCTTASIGCVDCKKLLLKNM 289
>pdb|3P0J|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|C Chain C, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|D Chain D, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
Length = 690
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 246 IDQDPYFRLTRDVAPKLGY-VKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVK 304
+DQ L R+ +G +KP ++ L+ KMS SD +SAIF+ DT + V
Sbjct: 191 LDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMEDTEEDVA 250
Query: 305 NKVNKHAYS 313
K+ + AY
Sbjct: 251 RKI-RQAYC 258
>pdb|2JAN|A Chain A, Tyrosyl-Trna Synthetase From Mycobacterium Tuberculosis In
Unliganded State
pdb|2JAN|B Chain B, Tyrosyl-Trna Synthetase From Mycobacterium Tuberculosis In
Unliganded State
pdb|2JAN|C Chain C, Tyrosyl-Trna Synthetase From Mycobacterium Tuberculosis In
Unliganded State
pdb|2JAN|D Chain D, Tyrosyl-Trna Synthetase From Mycobacterium Tuberculosis In
Unliganded State
Length = 432
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 71 RGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVI 130
RG+ D+ ++ ++G P +Y G P++ S+H GHL+P + + Q P+V+
Sbjct: 12 RGLIAQSTDLDTLAAEAQRG-PMTVYAGFDPTAPSLHAGHLVPLLTLRRFQRAGHRPIVL 70
>pdb|1I6K|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
pdb|1I6L|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
Length = 328
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 110/257 (42%), Gaps = 37/257 (14%)
Query: 138 SLWKNIKPEEAKKLAYENAKAIIACGF--KQDSTFIFSDI-DFMNPSFYLN-ILKIQKLV 193
++W++ P E ++ A +A G Q + FI S++ ++ L I+ I +L
Sbjct: 46 TVWQD--PHELRQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWXLQCIVYIGELE 103
Query: 194 NGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFR 253
T K K+ S G ++P + AA L++N + ++P DQ +
Sbjct: 104 RXTQFKEKSAGKEAVSAGLLTYPPLXAADI------LLYNTD-----IVPVGEDQKQHIE 152
Query: 254 LTRDVAPKLG--YVKPALIHSTFFP-------ALQGANTKMSASDLNSAIFLT--DTPKQ 302
LTRD+A + Y + I P +L K S SD N ++T D K
Sbjct: 153 LTRDLAERFNKRYGELFTIPEARIPKVGARIXSLVDPTKKXSKSDPNPKAYITLLDDAKT 212
Query: 303 VKNKVNKHAYSGGQATVEEHRELG-GNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSG--A 359
++ K+ K A + + T+ +E G ++ Y L+ +E++ + Y
Sbjct: 213 IEKKI-KSAVTDSEGTIRYDKEAKPGISNLLNIYSTLS-----GQSIEELERQYEGKGYG 266
Query: 360 LLTGELKKILIDTITPI 376
+ +L +++I+T+ PI
Sbjct: 267 VFKADLAQVVIETLRPI 283
>pdb|3FI0|A Chain A, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|B Chain B, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|C Chain C, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|D Chain D, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|E Chain E, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|F Chain F, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|G Chain G, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|H Chain H, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|I Chain I, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|J Chain J, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|K Chain K, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|L Chain L, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|M Chain M, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|N Chain N, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|O Chain O, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|P Chain P, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|Q Chain Q, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|R Chain R, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
Length = 326
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 110/257 (42%), Gaps = 37/257 (14%)
Query: 138 SLWKNIKPEEAKKLAYENAKAIIACGF--KQDSTFIFSDI-DFMNPSFYLN-ILKIQKLV 193
++W++ P E ++ A +A G Q + FI S++ ++ L I+ I +L
Sbjct: 46 TVWQD--PHELRQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWXLQCIVYIGELE 103
Query: 194 NGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFR 253
T K K+ S G ++P + AA L++N + ++P DQ +
Sbjct: 104 RXTQFKEKSAGKEAVSAGLLTYPPLXAADI------LLYNTD-----IVPVGEDQKQHIE 152
Query: 254 LTRDVAPKLG--YVKPALIHSTFFP-------ALQGANTKMSASDLNSAIFLT--DTPKQ 302
LTRD+A + Y + I P +L K S SD N ++T D K
Sbjct: 153 LTRDLAERFNKRYGELFTIPEARIPKVGARIXSLVDPTKKXSKSDPNPKAYITLLDDAKT 212
Query: 303 VKNKVNKHAYSGGQATVEEHRELG-GNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSG--A 359
++ K+ K A + + T+ +E G ++ Y L+ +E++ + Y
Sbjct: 213 IEKKI-KSAVTDSEGTIRYDKEAKPGISNLLNIYSTLS-----GQSIEELERQYEGKGYG 266
Query: 360 LLTGELKKILIDTITPI 376
+ +L +++I+T+ PI
Sbjct: 267 VFKADLAQVVIETLRPI 283
>pdb|3FHJ|F Chain F, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 297
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 102/256 (39%), Gaps = 47/256 (18%)
Query: 138 SLWKNIKPEEAKKLAYENAKAIIACGF--KQDSTFIFSDIDFMNPSFYLNILKIQKLVNG 195
++W++ P E ++ A +A G Q + FI S++ P+ +Q +V
Sbjct: 46 TVWQD--PHELRQNIRRLAALYLAVGIDPTQATLFIQSEV----PAHAQAAWMLQCIVY- 98
Query: 196 TTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLT 255
I L+ S G ++P + AA L++N + ++P DQ + LT
Sbjct: 99 -----IGELERMVSAGLLTYPPLMAADI------LLYNTD-----IVPVGEDQKQHIELT 142
Query: 256 RDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLT--DTPKQVKNKVNKHA-- 311
RD+A + + + +L KMS SD N ++T D K ++ K+
Sbjct: 143 RDLAERFNKRYFTIPEARRIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSSEGT 202
Query: 312 --YSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKIL 369
Y G + + L G ++ QY K Y + +L +++
Sbjct: 203 IRYPGISNLLNIYSTLSGQSIEELERQYEG-------------KGY---GVFKADLAQVV 246
Query: 370 IDTITPIVTQHQEAMK 385
I+T+ PI ++ M+
Sbjct: 247 IETLRPIQERYHHWME 262
>pdb|3FHJ|B Chain B, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 292
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 104/261 (39%), Gaps = 57/261 (21%)
Query: 138 SLWKNIKPEEAKKLAYENAKAIIACGF--KQDSTFIFSDIDFMNPSFYL--NILKIQKLV 193
++W++ P E ++ A +A G Q + FI S++ + ++ I+ I +L
Sbjct: 41 TVWQD--PHELRQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELE 98
Query: 194 NGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFR 253
T V S G ++P + AA L++N + ++P DQ +
Sbjct: 99 RMTQV----------SAGLLTYPPLMAADI------LLYNTD-----IVPVGEDQKQHIE 137
Query: 254 LTRDVAPKLG---YVKPALIHSTFFPALQGANTKMSASDLNSAIFLT--DTPKQVKNKVN 308
LTRD+A + + P I S P KMS SD N ++T D K ++ K+
Sbjct: 138 LTRDLAERFNKRYFTIPERIMSLVDP-----TKKMSKSDPNPKAYITLLDDAKTIEKKIK 192
Query: 309 KHA----YSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGE 364
Y G + + L G ++ QY K Y + +
Sbjct: 193 SSEGTIRYPGISNLLNIYSTLSGQSIEELERQYEG-------------KGY---GVFKAD 236
Query: 365 LKKILIDTITPIVTQHQEAMK 385
L +++I+T+ PI ++ M+
Sbjct: 237 LAQVVIETLRPIQERYHHWME 257
>pdb|3VGJ|A Chain A, Crystal Of Plasmodium Falciparum Tyrosyl-Trna Synthetase
(Pftyrrs)in Complex With Adenylate Analog
pdb|3VGJ|B Chain B, Crystal Of Plasmodium Falciparum Tyrosyl-Trna Synthetase
(Pftyrrs)in Complex With Adenylate Analog
Length = 373
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 245 AIDQDPYFRLTRDVA-PKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQV 303
IDQ L R+ K KP ++ P L KMS SD NSAIF+ D+ V
Sbjct: 207 GIDQRKVNMLAREYCDIKKIKKKPVILSHGMLPGLLEGQEKMSKSDENSAIFMDDSESDV 266
Query: 304 KNKVNKHAYS 313
K+ K AY
Sbjct: 267 NRKI-KKAYC 275
>pdb|1D2R|A Chain A, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|B Chain B, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|C Chain C, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|D Chain D, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|E Chain E, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|F Chain F, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site
Length = 326
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 113/266 (42%), Gaps = 37/266 (13%)
Query: 138 SLWKNIKPEEAKKLAYENAKAIIACGF--KQDSTFIFSDIDFMNPSFYL--NILKIQKLV 193
++W++ P E ++ A +A G Q + FI S++ + ++ I+ I +L
Sbjct: 46 TVWQD--PHELRQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELE 103
Query: 194 NGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFR 253
T K + G ++P + AA L++N + ++P DQ +
Sbjct: 104 RMTQFKEKSAGAAAAAAGLLTYPPLMAADI------LLYNTD-----IVPVGEDQKQHIE 152
Query: 254 LTRDVAPKLG--YVKPALIHSTFFP-------ALQGANTKMSASDLNSAIFLT--DTPKQ 302
LTRD+A + Y + I P +L KMS SD N ++T D K
Sbjct: 153 LTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKT 212
Query: 303 VKNKVNKHAYSGGQATVEEHRELG-GNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSG--A 359
++ K+ K A + + T+ +E G ++ Y L+ +E++ + Y
Sbjct: 213 IEKKI-KSAVTDSEGTIRYDKEAKPGISNLLNIYSTLS-----GQSIEELERQYEGKGYG 266
Query: 360 LLTGELKKILIDTITPIVTQHQEAMK 385
+ +L +++I+T+ PI ++ M+
Sbjct: 267 VFKADLAQVVIETLRPIQERYHHWME 292
>pdb|2YY5|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
pdb|2YY5|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
pdb|2YY5|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
pdb|2YY5|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
Length = 348
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 35/169 (20%), Positives = 71/169 (42%), Gaps = 18/169 (10%)
Query: 102 SSDSMHLGHLIPFMFTKWLQDVFDVPLVIQL---TDDEKSLWKNIKPEEAKKLAYENAKA 158
+S HLG+ + M Q + ++ QL D S+ + +P+ K+ ++ +
Sbjct: 13 ASGKQHLGNYLGVM-----QSLIELQEQCQLFVFVADLHSITVDFQPQALKQNNFDLVRT 67
Query: 159 IIACGFKQDSTFIFSDIDFMNPSFYLNILKIQ----KLVNGTTVKAIFGLKDFDSVGKFS 214
++A G +F D + S ++ +Q +L T KA + + G +
Sbjct: 68 LLAVGLDPQKACLFLQSDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNPNGTLN 127
Query: 215 FP-AIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKL 262
P + P+ + L++ P ++P DQ + LTRD+A ++
Sbjct: 128 IPTGLLTYPALMAGDILLYQ-----PDIVPVGNDQKQHLELTRDLAQRI 171
>pdb|1TYC|A Chain A, Structural Analysis Of A Series Of Mutants Of Tyrosyl-Trna
Synthetase: Enhancement Of Catalysis By Hydrophobic
Interactions
Length = 319
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 95 LYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVI 130
LY G P++DS+H+GHL P + + Q P+ +
Sbjct: 33 LYCGFDPTADSLHIGHLAPILTMRRFQQAGHRPIAL 68
>pdb|3FHJ|D Chain D, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 287
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 85/203 (41%), Gaps = 39/203 (19%)
Query: 138 SLWKNIKPEEAKKLAYENAKAIIACGF--KQDSTFIFSDIDFMNPSFYL--NILKIQKLV 193
++W++ P E ++ A +A G Q + FI S++ + ++ I+ I +L
Sbjct: 46 TVWQD--PHELRQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELE 103
Query: 194 NGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFR 253
T V S G ++P + AA L++N + ++P DQ +
Sbjct: 104 RMTQV----------SAGLLTYPPLMAADI------LLYNTD-----IVPVGEDQKQHIE 142
Query: 254 LTRDVAPKLGYVKPALIH--STFFPALQGANTKMSASDLNSAIFLT--DTPKQVKNKV-- 307
LTRD+A + + A I +L KMS SD N ++T D K ++ K+
Sbjct: 143 LTRDLAERFFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKS 202
Query: 308 ------NKHAYSGGQATVEEHRE 324
N ++ GQ+ E R+
Sbjct: 203 AISNLLNIYSTLSGQSIEELERQ 225
>pdb|3P0H|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Fisetin, Cubic Crystal Form
pdb|3P0H|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Fisetin, Cubic Crystal Form
pdb|3P0I|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Cubic Crystal Form
pdb|3P0I|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Cubic Crystal Form
Length = 690
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 246 IDQDPYFRLTRDVAPKLGY-VKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVK 304
+DQ L R+ +G +KP ++ L+ K S SD +SAIF DT + V
Sbjct: 191 LDQRKVNXLAREYCDLIGRKLKPVILSHHXLAGLKQGQAKXSKSDPDSAIFXEDTEEDVA 250
Query: 305 NKVNKHAYS 313
K+ + AY
Sbjct: 251 RKI-RQAYC 258
>pdb|2CYC|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Pyrococcus Horikoshii
pdb|2CYC|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Pyrococcus Horikoshii
Length = 375
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 25/91 (27%)
Query: 244 CAIDQDPYFRLTRDVAPKLGY---------VKPALIHSTFFPALQ--------------- 279
+DQ + +VA KL Y +KP +H LQ
Sbjct: 186 AGMDQRKAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKE 245
Query: 280 -GANTKMSASDLNSAIFLTDTPKQVKNKVNK 309
A KMS S SA+F+ D+P++++ K+ K
Sbjct: 246 IKAQMKMSKSKPYSAVFIHDSPEEIRQKLRK 276
>pdb|3FHJ|A Chain A, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 300
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 106/273 (38%), Gaps = 73/273 (26%)
Query: 138 SLWKNIKPEEAKKLAYENAKAIIACGF--KQDSTFIFSDIDFMNPSFYL--NILKIQKLV 193
++W++ P E ++ A +A G Q + FI S++ + ++ I+ I +L
Sbjct: 41 TVWQD--PHELRQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELE 98
Query: 194 NGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFR 253
T V S G ++P + AA L++N + ++P DQ +
Sbjct: 99 RMTQV----------SAGLLTYPPLMAADI------LLYNTD-----IVPVGEDQKQHIE 137
Query: 254 LTRDVA---------------PKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLT- 297
LTRD+A PK+G A I S P KMS SD N ++T
Sbjct: 138 LTRDLAERFNKRYFTIPEARIPKVG----ARIMSLVDP-----TKKMSKSDPNPKAYITL 188
Query: 298 -DTPKQVKNKVNKHA----YSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIR 352
D K ++ K+ Y G + + L G ++ QY
Sbjct: 189 LDDAKTIEKKIKSSEGTIRYPGISNLLNIYSTLSGQSIEELERQYEG------------- 235
Query: 353 KNYTSGALLTGELKKILIDTITPIVTQHQEAMK 385
K Y + +L +++I+T+ PI ++ M+
Sbjct: 236 KGY---GVFKADLAQVVIETLRPIQERYHHWME 265
>pdb|3FHJ|E Chain E, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 293
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 105/269 (39%), Gaps = 72/269 (26%)
Query: 138 SLWKNIKPEEAKKLAYENAKAIIACGF--KQDSTFIFSDIDFMNPSFYL--NILKIQKLV 193
++W++ P E ++ A +A G Q + FI S++ + ++ I+ I +L
Sbjct: 41 TVWQD--PHELRQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELE 98
Query: 194 NGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFR 253
T V S G ++P + AA L++N + ++P DQ +
Sbjct: 99 RMTQV----------SAGLLTYPPLMAADI------LLYNTD-----IVPVGEDQKQHIE 137
Query: 254 LTRDVA---------------PKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLT- 297
LTRD+A PK+G A I S P KMS SD N ++T
Sbjct: 138 LTRDLAERFNKRYFTIPEARIPKVG----ARIMSLVDP-----TKKMSKSDPNPKAYITL 188
Query: 298 -DTPKQVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYT 356
D K ++ K+ S + + L G ++ QY K Y
Sbjct: 189 LDDAKTIEKKIKSPGISN---LLNIYSTLSGQSIEELERQYEG-------------KGY- 231
Query: 357 SGALLTGELKKILIDTITPIVTQHQEAMK 385
+ +L +++I+T+ PI ++ M+
Sbjct: 232 --GVFKADLAQVVIETLRPIQERYHHWME 258
>pdb|1TYA|E Chain E, Structural Analysis Of A Series Of Mutants Of Tyrosyl-Trna
Synthetase: Enhancement Of Catalysis By Hydrophobic
Interactions
Length = 319
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 95 LYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVI 130
LY G P++DS+H+GHL + + Q P+ +
Sbjct: 33 LYCGFDPTADSLHIGHLAAILTMRRFQQAGHRPIAL 68
>pdb|2TS1|A Chain A, Structure Of Tyrosyl-TRNA SYNTHETASE REFINED AT 2.3
ANGSTROMS Resolution. Interaction Of The Enzyme With The
Tyrosyl Adenylate Intermediate
pdb|3TS1|A Chain A, Structure Of Tyrosyl-t/rna Synthetase Refined At 2.3
Angstroms Resolution. Interaction Of The Enzyme With The
Tyrosyl Adenylate Intermediate
Length = 419
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 95 LYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVI 130
LY G P++DS+H+GHL + + Q P+ +
Sbjct: 33 LYCGFDPTADSLHIGHLATILTMRRFQQAGHRPIAL 68
>pdb|1TYD|E Chain E, Structure Of Tyrosyl-Trna Synthetase Refined At 2.3
Angstroms Resolution. Interaction Of The Enzyme With The
Tyrosyl Adenylate Intermediate
Length = 319
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 95 LYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVI 130
LY G P++DS+H+GHL + + Q P+ +
Sbjct: 33 LYCGFDPTADSLHIGHLASILTMRRFQQAGHRPIAL 68
>pdb|4TS1|A Chain A, Crystal Structure Of A Deletion Mutant Of A Tyrosyl-TRNA
Synthetase Complexed With Tyrosine
pdb|4TS1|B Chain B, Crystal Structure Of A Deletion Mutant Of A Tyrosyl-TRNA
Synthetase Complexed With Tyrosine
Length = 319
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 95 LYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVI 130
LY G P++DS+H+GHL + + Q P+ +
Sbjct: 33 LYCGFDPTADSLHIGHLATILTMRRFQQAGHRPIAL 68
>pdb|1TYB|E Chain E, Structural Analysis Of A Series Of Mutants Of Tyrosyl-Trna
Synthetase: Enhancement Of Catalysis By Hydrophobic
Interactions
Length = 319
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 95 LYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVI 130
LY G P++DS+H+GHL + + Q P+ +
Sbjct: 33 LYCGFDPTADSLHIGHLAGILTMRRFQQAGHRPIAL 68
>pdb|1Y42|X Chain X, Crystal Structure Of A C-Terminally Truncated Cyt-18
Protein
pdb|2RKJ|A Chain A, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|B Chain B, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|E Chain E, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|F Chain F, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|I Chain I, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|J Chain J, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|M Chain M, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|N Chain N, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
Length = 392
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 96 YTGRGPSSDSMHLGHLIPFMFTKWL 120
Y G P++ S+H+GHL+P M W+
Sbjct: 68 YVGIDPTAPSLHVGHLLPLMPLFWM 92
>pdb|2IA5|A Chain A, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
Magnesium.
pdb|2IA5|B Chain B, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
Magnesium.
pdb|2IA5|C Chain C, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
Magnesium.
pdb|2IA5|D Chain D, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
Magnesium.
pdb|2IA5|E Chain E, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
Magnesium.
pdb|2IA5|F Chain F, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
Magnesium.
pdb|2IA5|G Chain G, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
Magnesium.
pdb|2IA5|H Chain H, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
Magnesium.
pdb|2IA5|I Chain I, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
Magnesium.
pdb|2IA5|J Chain J, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
Magnesium.
pdb|2IA5|K Chain K, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
Magnesium.
pdb|2IA5|L Chain L, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
Magnesium
Length = 301
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 11/57 (19%)
Query: 115 MFTKWLQDVFDVPLVIQLT--------DD---EKSLWKNIKPEEAKKLAYENAKAII 160
M KW++D+ VPLV+Q DD E+ WK+I P KLA ++ ++
Sbjct: 227 MTRKWVEDIAGVPLVMQCQREQGDTRKDDVVKEEIFWKHIAPHFDVKLAIDDRTQVV 283
>pdb|3FHJ|C Chain C, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 280
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 80/199 (40%), Gaps = 53/199 (26%)
Query: 138 SLWKNIKPEEAKKLAYENAKAIIACGF--KQDSTFIFSDIDFMNPSFYL--NILKIQKLV 193
++W++ P E ++ A +A G Q + FI S++ + ++ I+ I +L
Sbjct: 41 TVWQD--PHELRQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELE 98
Query: 194 NGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFR 253
T V S G ++P + AA L++N + ++P DQ +
Sbjct: 99 RMTQV----------SAGLLTYPPLMAADI------LLYNTD-----IVPVGEDQKQHIE 137
Query: 254 LTRDVA---------------PKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLT- 297
LTRD+A PK+G A I S P KMS SD N ++T
Sbjct: 138 LTRDLAERFNKRYFTIPEARIPKVG----ARIMSLVDP-----TKKMSKSDPNPKAYITL 188
Query: 298 -DTPKQVKNKVNKHAYSGG 315
D K ++ K+ + G
Sbjct: 189 LDDAKTIEKKIKSSEGTPG 207
>pdb|1E51|A Chain A, Crystal Structure Of Native Human Erythrocyte 5-
Aminolaevulinic Acid Dehydratase
pdb|1E51|B Chain B, Crystal Structure Of Native Human Erythrocyte 5-
Aminolaevulinic Acid Dehydratase
Length = 330
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 268 ALIHSTFF----PALQGANTKMSASDLNSAIFLTDTPKQVK 304
+++HS +F A Q A T ++AS+L IF+TD P ++
Sbjct: 5 SVLHSGYFHPLLRAWQTATTTLNASNLIYPIFVTDVPDDIQ 45
>pdb|1LTQ|A Chain A, Crystal Structure Of T4 Polynucleotide Kinase
pdb|1RC8|A Chain A, T4 Polynucleotide Kinase Bound To 5'-Gtcac-3' Ssdna
pdb|1RPZ|A Chain A, T4 Polynucleotide Kinase Bound To 5'-Tgcac-3' Ssdna
pdb|1RRC|A Chain A, T4 Polynucleotide Kinase Bound To 5'-Gtc-3' Ssdna
Length = 301
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 11/54 (20%)
Query: 118 KWLQDVFDVPLVIQLT--------DD---EKSLWKNIKPEEAKKLAYENAKAII 160
KW++D+ VPLV Q DD E+ WK+I P KLA ++ ++
Sbjct: 230 KWVEDIAGVPLVXQCQREQGDTRKDDVVKEEIFWKHIAPHFDVKLAIDDRTQVV 283
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,534,454
Number of Sequences: 62578
Number of extensions: 538183
Number of successful extensions: 1373
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1294
Number of HSP's gapped (non-prelim): 62
length of query: 405
length of database: 14,973,337
effective HSP length: 101
effective length of query: 304
effective length of database: 8,652,959
effective search space: 2630499536
effective search space used: 2630499536
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)