BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13709
(405 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P23381|SYWC_HUMAN Tryptophan--tRNA ligase, cytoplasmic OS=Homo sapiens GN=WARS PE=1
SV=2
Length = 471
Score = 577 bits (1486), Expect = e-164, Method: Compositional matrix adjust.
Identities = 269/404 (66%), Positives = 325/404 (80%), Gaps = 9/404 (2%)
Query: 11 PAPT-------VDGEDDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNK 63
PAPT + E+D VDPW V + S G+DYDKLI +FGSSKID ELI R E+ T +
Sbjct: 67 PAPTSNHGPDATEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQ 126
Query: 64 KVHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDV 123
+ HH LRRGIFFSHRDM+ +L+ YE KPF+LYTGRGPSS++MH+GHLIPF+FTKWLQDV
Sbjct: 127 RPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDV 186
Query: 124 FDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPS-- 181
F+VPLVIQ+TDDEK LWK++ ++A A ENAK IIACGF + TFIFSD+D+M S
Sbjct: 187 FNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYMGMSSG 246
Query: 182 FYLNILKIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCL 241
FY N++KIQK V VK IFG D D +GK SFPAIQAAPSFS++FP IF + CL
Sbjct: 247 FYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCL 306
Query: 242 IPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPK 301
IPCAIDQDPYFR+TRDVAP++GY KPAL+HSTFFPALQGA TKMSASD NS+IFLTDT K
Sbjct: 307 IPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAK 366
Query: 302 QVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALL 361
Q+K KVNKHA+SGG+ T+EEHR+ GGNCDVD+++ YLTFFLEDDDKLEQIRK+YTSGA+L
Sbjct: 367 QIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAML 426
Query: 362 TGELKKILIDTITPIVTQHQEAMKGVTEEVLAQYMTPRKLKFDF 405
TGELKK LI+ + P++ +HQ K VT+E++ ++MTPRKL FDF
Sbjct: 427 TGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSFDF 470
>sp|P17248|SYWC_BOVIN Tryptophan--tRNA ligase, cytoplasmic OS=Bos taurus GN=WARS PE=1
SV=3
Length = 476
Score = 574 bits (1480), Expect = e-163, Method: Compositional matrix adjust.
Identities = 267/405 (65%), Positives = 325/405 (80%), Gaps = 9/405 (2%)
Query: 10 EPAP-------TVDGEDDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTN 62
+PAP + ++D VDPW V + S G+DYDKLI +FGSSKID EL+ R E+ T
Sbjct: 71 DPAPESGEGLDATEADEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELVNRIERATG 130
Query: 63 KKVHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQD 122
++ H LRRGIFFSHRDMH IL+ YE KPF+LYTGRGPSS++MH+GHLIPF+FTKWLQD
Sbjct: 131 QRPHRFLRRGIFFSHRDMHQILDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQD 190
Query: 123 VFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFM--NP 180
VF+VPLVIQ+TDDEK LWK++ ++A A ENAK IIACGF + TFIFSD+D+M +P
Sbjct: 191 VFNVPLVIQMTDDEKYLWKDLTLDQAYGYAVENAKDIIACGFDINKTFIFSDLDYMGMSP 250
Query: 181 SFYLNILKIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPC 240
FY N++KIQK V VK IFG D D +GK SFPAIQAAPSFS++FP IF V C
Sbjct: 251 GFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDVQC 310
Query: 241 LIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTP 300
LIPCAIDQDPYFR+TRDVAP++GY KPAL+HSTFFPALQGA TKMSASD NS+IFLTDT
Sbjct: 311 LIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTA 370
Query: 301 KQVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGAL 360
KQ+K KVNKHA+SGG+ TVEEHR+ GGNCDVD+++ YLTFFLEDDDKLEQIR++YTSGA+
Sbjct: 371 KQIKTKVNKHAFSGGRDTVEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRRDYTSGAM 430
Query: 361 LTGELKKILIDTITPIVTQHQEAMKGVTEEVLAQYMTPRKLKFDF 405
LTGELKK LI+ + P++ +HQ K VT+E++ ++MTPRKL +DF
Sbjct: 431 LTGELKKELIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSYDF 475
>sp|Q5R4J1|SYWC_PONAB Tryptophan--tRNA ligase, cytoplasmic OS=Pongo abelii GN=WARS PE=2
SV=2
Length = 472
Score = 573 bits (1478), Expect = e-163, Method: Compositional matrix adjust.
Identities = 268/404 (66%), Positives = 324/404 (80%), Gaps = 9/404 (2%)
Query: 11 PAPT-------VDGEDDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNK 63
PAPT + E+D VDPW V + S G+DYDKLI +FGSSKID ELI R E+ T +
Sbjct: 68 PAPTSNHGPDATEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQ 127
Query: 64 KVHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDV 123
+ H LRRGIFFSHRDM+ +L+ YE KPF+LYTGRGPSS++MH+GHLIPF+FTKWLQDV
Sbjct: 128 RPHRFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDV 187
Query: 124 FDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPS-- 181
F+VPLVIQ+TDDEK LWK++ ++A A ENAK IIACGF + TFIFSD+D+M S
Sbjct: 188 FNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYMGMSSG 247
Query: 182 FYLNILKIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCL 241
FY N++KIQK V VK IFG D D +GK SFPAIQAAPSFS++FP IF + CL
Sbjct: 248 FYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCL 307
Query: 242 IPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPK 301
IPCAIDQDPYFR+TRDVAP++GY KPAL+HSTFFPALQGA TKMSASD NS+IFLTDT K
Sbjct: 308 IPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAK 367
Query: 302 QVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALL 361
Q+K KVNKHA+SGG+ T+EEHR+ GGNCDVD+++ YLTFFLEDDDKLEQIRK+YTSGA+L
Sbjct: 368 QIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAML 427
Query: 362 TGELKKILIDTITPIVTQHQEAMKGVTEEVLAQYMTPRKLKFDF 405
TGELKK LI+ + P++ +HQ K VT+E++ ++MTPRKL FDF
Sbjct: 428 TGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSFDF 471
>sp|P23612|SYWC_RABIT Tryptophan--tRNA ligase, cytoplasmic OS=Oryctolagus cuniculus
GN=WARS PE=2 SV=3
Length = 475
Score = 565 bits (1457), Expect = e-160, Method: Compositional matrix adjust.
Identities = 260/394 (65%), Positives = 320/394 (81%), Gaps = 2/394 (0%)
Query: 14 TVDGEDDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGI 73
VD ++D VDPW V + S G+DYDKLI +FGSSKID EL+ R E+ T ++ H LRRGI
Sbjct: 81 AVDDKEDFVDPWTVRTSSAKGIDYDKLIVQFGSSKIDKELVNRIERATGQRPHRFLRRGI 140
Query: 74 FFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLT 133
FFSHRDM+ +L+ YE KPF+LYTGRGPSS++MH+GHLIPF+FTKWLQDVFDVPLV+Q++
Sbjct: 141 FFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFDVPLVVQMS 200
Query: 134 DDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFM--NPSFYLNILKIQK 191
DDEK LWK++ E+ ENAK IIACGF + TFIFSD+D+M +P FY N++KIQK
Sbjct: 201 DDEKYLWKDLTLEQVYGYTLENAKDIIACGFDVNKTFIFSDLDYMGMSPGFYKNVVKIQK 260
Query: 192 LVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPY 251
V VK IFG D D +GK SFPAIQAAPSFS++FP IF+ + CLIPCAIDQDPY
Sbjct: 261 HVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFHGQADIQCLIPCAIDQDPY 320
Query: 252 FRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHA 311
FR+TRDVAP++GY KPAL+HSTFFPALQGA TKMSASD NS+IFLTDT KQ+K KVNKHA
Sbjct: 321 FRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHA 380
Query: 312 YSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILID 371
+SGG+ T+EEHR+ GGNCDVD+++ YLTFFLEDDDKLEQIRK+Y+SGA+LTGELKK LID
Sbjct: 381 FSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYSSGAMLTGELKKELID 440
Query: 372 TITPIVTQHQEAMKGVTEEVLAQYMTPRKLKFDF 405
+ P+V +HQ K VT+E++ ++MTPR+L F +
Sbjct: 441 VLQPLVAEHQARRKEVTDEMVKEFMTPRQLCFHY 474
>sp|P32921|SYWC_MOUSE Tryptophan--tRNA ligase, cytoplasmic OS=Mus musculus GN=Wars PE=1
SV=2
Length = 481
Score = 564 bits (1454), Expect = e-160, Method: Compositional matrix adjust.
Identities = 259/391 (66%), Positives = 317/391 (81%), Gaps = 2/391 (0%)
Query: 17 GEDDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFS 76
+D VDPW V + S G+DYDKLI +FGSSKID ELI R E+ T ++ H LRRGIFFS
Sbjct: 84 ASEDFVDPWTVRTSSAKGIDYDKLIVQFGSSKIDKELINRIERATGQRPHRFLRRGIFFS 143
Query: 77 HRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDE 136
HRDM+ IL+ YE KPF+LYTGRGPSS++MHLGHL+PF+FTKWLQDVF+VPLVIQ++DDE
Sbjct: 144 HRDMNQILDAYENKKPFYLYTGRGPSSEAMHLGHLVPFIFTKWLQDVFNVPLVIQMSDDE 203
Query: 137 KSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFM--NPSFYLNILKIQKLVN 194
K LWK++ E+A ENAK IIACGF + TFIFSD+++M +P FY N++KIQK V
Sbjct: 204 KYLWKDLTLEQAYSYTVENAKDIIACGFDINKTFIFSDLEYMGQSPGFYRNVVKIQKHVT 263
Query: 195 GTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRL 254
VK IFG D D +GK SFPA+QAAPSFS++FP IF + CLIPCAIDQDPYFR+
Sbjct: 264 FNQVKGIFGFTDSDCIGKISFPAVQAAPSFSNSFPKIFRDRTDIQCLIPCAIDQDPYFRM 323
Query: 255 TRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSG 314
TRDVAP++G+ KPAL+HSTFFPALQGA TKMSASD NS+IFLTDT KQ+K+KVNKHA+SG
Sbjct: 324 TRDVAPRIGHPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKSKVNKHAFSG 383
Query: 315 GQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTIT 374
G+ TVEEHR+ GGNC+VD+++ YLTFFLEDDD+LEQIRK+YTSGA+LTGELKK LID +
Sbjct: 384 GRDTVEEHRQFGGNCEVDVSFMYLTFFLEDDDRLEQIRKDYTSGAMLTGELKKTLIDVLQ 443
Query: 375 PIVTQHQEAMKGVTEEVLAQYMTPRKLKFDF 405
P++ +HQ K VTEE + ++MTPR+L F F
Sbjct: 444 PLIAEHQARRKAVTEETVKEFMTPRQLSFHF 474
>sp|Q6P7B0|SYWC_RAT Tryptophan--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Wars
PE=1 SV=2
Length = 481
Score = 563 bits (1451), Expect = e-160, Method: Compositional matrix adjust.
Identities = 259/391 (66%), Positives = 315/391 (80%), Gaps = 2/391 (0%)
Query: 17 GEDDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFS 76
+D VDPW V + S G+DYDKLI +FGSSKID ELI R E+ T ++ H LRRGIFFS
Sbjct: 84 ASEDFVDPWTVRTSSAKGIDYDKLIVQFGSSKIDKELINRIERATGQRPHRFLRRGIFFS 143
Query: 77 HRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDE 136
HRDM+ IL+ YE KPF+LYTGRGPSS++MHLGHL+PF+FTKWLQDVFDVPLVIQ++DDE
Sbjct: 144 HRDMNQILDAYENKKPFYLYTGRGPSSEAMHLGHLVPFIFTKWLQDVFDVPLVIQMSDDE 203
Query: 137 KSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFM--NPSFYLNILKIQKLVN 194
K LWK++ E+A ENAK IIACGF + TFIFSD+++M +P FY N++KIQK V
Sbjct: 204 KYLWKDLTLEQAYSYTVENAKDIIACGFDVNKTFIFSDLEYMGQSPGFYKNVVKIQKHVT 263
Query: 195 GTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRL 254
VK IFG D D +GK SFPA+QAAPSFS++FP IF + CLIPCAIDQDPYFR+
Sbjct: 264 FNQVKGIFGFTDSDCIGKISFPAVQAAPSFSNSFPKIFRDRTDIQCLIPCAIDQDPYFRM 323
Query: 255 TRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSG 314
TRDVAP++G+ KPAL+HSTFFPALQGA TKMSASD NS+IFLTDT KQ+K+KVNKHA+SG
Sbjct: 324 TRDVAPRIGHPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKSKVNKHAFSG 383
Query: 315 GQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTIT 374
G+ TVEEHR+ GGNC+VD+++ YLTFFLEDDD LEQIRK+YTSGA+LTGELKK LID +
Sbjct: 384 GRDTVEEHRQFGGNCEVDVSFMYLTFFLEDDDSLEQIRKDYTSGAMLTGELKKTLIDVLQ 443
Query: 375 PIVTQHQEAMKGVTEEVLAQYMTPRKLKFDF 405
P++ +HQ K VTEE + ++M PR+L F F
Sbjct: 444 PLIAEHQARRKAVTEETVKEFMAPRQLSFHF 474
>sp|Q12109|SYWC_YEAST Tryptophan--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=WRS1 PE=1 SV=1
Length = 432
Score = 468 bits (1205), Expect = e-131, Method: Compositional matrix adjust.
Identities = 223/394 (56%), Positives = 290/394 (73%), Gaps = 6/394 (1%)
Query: 14 TVDGEDDVVDPWNVTSK-----SMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHL 68
+ D ++ VV PW+V +DYDKLIK+FG+ +++E + RF++VT ++ HH
Sbjct: 19 STDVKEQVVTPWDVEGGVDEQGRAQNIDYDKLIKQFGTKPVNEETLKRFKQVTGREPHHF 78
Query: 69 LRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPL 128
LR+G+FFS RD IL+LYEQGKPFFLYTGRGPSSDSMHLGH+IPF+FTKWLQ+VFDVPL
Sbjct: 79 LRKGLFFSERDFTKILDLYEQGKPFFLYTGRGPSSDSMHLGHMIPFVFTKWLQEVFDVPL 138
Query: 129 VIQLTDDEKSLWKN-IKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPSFYLNIL 187
VI+LTDDEK L+K+ + + K A ENAK IIA GF +TFIFSD+ +M +FY ++
Sbjct: 139 VIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFSDLQYMGGAFYETVV 198
Query: 188 KIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAID 247
++ + + G+T KA+FG D D +GKF F +IQ A +F S+FP + K PCLIPCAID
Sbjct: 199 RVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAID 258
Query: 248 QDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKV 307
QDPYFR+ RDVA KL Y KPAL+HS FFPALQG+ TKMSASD +AIF+TDTPKQ++ K+
Sbjct: 259 QDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIFMTDTPKQIQKKI 318
Query: 308 NKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKK 367
NK+A+SGGQ + + HRELGGN DVD+AYQYL+FF +DD L++ Y SG LL+GE+KK
Sbjct: 319 NKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGELLSGEMKK 378
Query: 368 ILIDTITPIVTQHQEAMKGVTEEVLAQYMTPRKL 401
+ I+T+ V QE V EE L ++M P KL
Sbjct: 379 LCIETLQEFVKAFQERRAQVDEETLDKFMVPHKL 412
>sp|Q55DZ8|SYWC_DICDI Tryptophan--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum
GN=trpS PE=3 SV=1
Length = 400
Score = 467 bits (1201), Expect = e-131, Method: Compositional matrix adjust.
Identities = 220/387 (56%), Positives = 291/387 (75%), Gaps = 5/387 (1%)
Query: 21 VVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSHRDM 80
V+ PW V + VDY KL+ +FGS+ I +ELIARFEKVT K+ HH LRRGIFFSHRD+
Sbjct: 15 VITPWEVEAAPGGSVDYMKLVDQFGSTVISEELIARFEKVTGKRAHHFLRRGIFFSHRDL 74
Query: 81 HSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLW 140
IL+ +E GK +FLYTGRGPSS S+H GHL+PF FTK+LQD F+VPLV+Q+T+DEK LW
Sbjct: 75 KEILDHHESGKKWFLYTGRGPSSGSLHFGHLLPFTFTKYLQDAFNVPLVVQMTNDEKFLW 134
Query: 141 KNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPSFYLNILKIQKLVNGTTVKA 200
K++ EE+ K + N K IIA GF TFIFS++++++ Y N+LKI + VN ++
Sbjct: 135 KDMTLEESIKFTHNNVKDIIALGFDIQKTFIFSNLEYIH-HLYPNVLKIARCVNLNQIQN 193
Query: 201 IFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKN----HKVPCLIPCAIDQDPYFRLTR 256
IFG K+ D++GKF+FP +QAAP F +FP IF N + CLIPCAIDQDPYFR+TR
Sbjct: 194 IFGFKESDAIGKFTFPPVQAAPCFPDSFPHIFPLNDPEIKNIRCLIPCAIDQDPYFRMTR 253
Query: 257 DVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQ 316
D+A ++G+ KPALIHS FFPALQG NTKMSASD NSA++L+DTP QVK+K+ KHA+SGG
Sbjct: 254 DIAHRIGHQKPALIHSKFFPALQGHNTKMSASDTNSAVYLSDTPDQVKDKIKKHAFSGGG 313
Query: 317 ATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPI 376
AT EE + G + VDI Y+YLTF LEDD++L+ I Y++G ++TGE+K+ILID + I
Sbjct: 314 ATKEEQEKNGADLSVDITYEYLTFMLEDDEQLKDIAHRYSTGKMMTGEIKQILIDLMNKI 373
Query: 377 VTQHQEAMKGVTEEVLAQYMTPRKLKF 403
+ +H+EA +T+EVL+ +M+ RKL F
Sbjct: 374 IIRHKEARAKITDEVLSTFMSIRKLNF 400
>sp|Q09692|SYWC_SCHPO Tryptophan--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=wrs1 PE=1 SV=1
Length = 395
Score = 461 bits (1187), Expect = e-129, Method: Compositional matrix adjust.
Identities = 227/392 (57%), Positives = 284/392 (72%), Gaps = 6/392 (1%)
Query: 18 EDDVVDPWNVTSKSM----TGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGI 73
E+ +V PW+V + G+DY++LI +FG+ KI E + RFEK+T KK H LLRRG
Sbjct: 4 EEQIVTPWDVKGSIVDGEEKGIDYERLIVQFGTRKITPEQLERFEKLTGKKPHLLLRRGA 63
Query: 74 FFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLT 133
FFSHRD IL+ YEQ KPF+LYTGRGPSSDSMHLGH+IPFMF KWLQDVF VPLVIQLT
Sbjct: 64 FFSHRDFDMILDRYEQKKPFYLYTGRGPSSDSMHLGHMIPFMFCKWLQDVFQVPLVIQLT 123
Query: 134 DDEKSLWK-NIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPSFYLNILKIQKL 192
DDEK L+K + E+ ++ A ENAK IIA GF TFIF + ++ +FY N+++I K
Sbjct: 124 DDEKFLFKQGVSLEDCQRFARENAKDIIAVGFDPKKTFIFMNSTYVGGAFYQNVVRIAKC 183
Query: 193 VNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYF 252
+ KA FG D DS+GK F +IQAAPSFSS+FP IFN +PCLIPCAIDQDPYF
Sbjct: 184 ITANQSKACFGFTDSDSIGKIHFASIQAAPSFSSSFPHIFNGAKDIPCLIPCAIDQDPYF 243
Query: 253 RLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAY 312
RLTRDV+ +L + KPAL+HS FFPALQG +KMSAS +SAIF+TDTP ++KNK+N+HA+
Sbjct: 244 RLTRDVSGRLKFKKPALLHSRFFPALQGPQSKMSASKDSSAIFMTDTPNKIKNKINRHAF 303
Query: 313 SGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDT 372
SGG AT+E HRE GGN DVD+AYQYL+FFL+DD+KL+Q+ Y +G L TGE+K I
Sbjct: 304 SGGGATIEIHREKGGNPDVDVAYQYLSFFLDDDEKLKQLYNTYKAGTLSTGEMKGECIKL 363
Query: 373 ITPIVTQHQEAMKGVTEEVLAQYM-TPRKLKF 403
+ V+ Q A V E L +M RKL++
Sbjct: 364 LQQFVSDFQAARSKVDEATLDMFMDGSRKLEW 395
>sp|O96771|SYW_ENCCU Tryptophan--tRNA ligase OS=Encephalitozoon cuniculi (strain GB-M1)
GN=ECU11_0530 PE=1 SV=2
Length = 385
Score = 344 bits (882), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 168/384 (43%), Positives = 244/384 (63%), Gaps = 8/384 (2%)
Query: 22 VDPWNV----TSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSH 77
+ PW+V T + +DYDK+I +FG K + L R EK++ K H+ RRGI F+H
Sbjct: 6 ITPWDVEVVSTDEVPVAIDYDKIINQFGCEKFNQALADRLEKLSGKPAHYFFRRGIVFAH 65
Query: 78 RDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEK 137
RD + +L+ +PF+LYTGRGPSS +MH+GH IPF+ K++QD F + LVIQ+TDDEK
Sbjct: 66 RDFNLLLDEIANNRPFYLYTGRGPSSKTMHIGHTIPFLLCKYMQDAFKIRLVIQITDDEK 125
Query: 138 SLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPSFYLNILKIQKLVNGTT 197
LWK+++ E+A EN K I+A GF T+IFS+++ + F NILKI K +N
Sbjct: 126 FLWKSMRLEDAMAYGRENIKDIVALGFDPKLTYIFSNVE-ASHHFEENILKISKTINLNE 184
Query: 198 VKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRD 257
+FG ++G+ FPA + AP FSS+F I CL+P A+DQDP+FRL RD
Sbjct: 185 AIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFI---GKGAMCLVPAAVDQDPFFRLARD 241
Query: 258 VAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQA 317
A LG KP+ I+ + P L+G N KMSASD NS+I+L D ++ K+ +AYSGG+
Sbjct: 242 KAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLDDAQDTIRKKIIAYAYSGGRK 301
Query: 318 TVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPIV 377
T+EEHRE GG+ DVD+ ++YL +FL+DD +LE+ R Y G + + E+K+ + I V
Sbjct: 302 TLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGYIKGEITSKEMKEKCVVVIQEFV 361
Query: 378 TQHQEAMKGVTEEVLAQYMTPRKL 401
+++QE+ K VT++ L ++ K
Sbjct: 362 SRYQESRKRVTDDDLRAFIDINKF 385
>sp|Q4JBG7|SYW_SULAC Tryptophan--tRNA ligase OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=trpS PE=3 SV=1
Length = 381
Score = 340 bits (871), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 179/369 (48%), Positives = 243/369 (65%), Gaps = 20/369 (5%)
Query: 17 GEDDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFS 76
+D V PW V K VDYDKLI +FG+ K+ EL R ++ N ++H +LRR +FFS
Sbjct: 2 AQDFTVTPWEVKGK----VDYDKLIVQFGTQKMTSELKERAKRAINDELHVMLRRDVFFS 57
Query: 77 HRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDE 136
HRD ILN YE+G FFLYTGR PS MH+GHLIPF+FTKWLQ+ F V + I++TDDE
Sbjct: 58 HRDFDLILNDYEKGNGFFLYTGRAPSL-GMHIGHLIPFIFTKWLQEKFKVNVYIEITDDE 116
Query: 137 KSLWKNI--KPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPSFYLNILKIQKLVN 194
K L +N+ ++ K+ +YEN IIA GF + TFIF D +++ + L++ KI K +
Sbjct: 117 KFL-RNVDYTLDQTKEWSYENILDIIAVGFDPNKTFIFQDTEYIKNMYPLSV-KIAKKLT 174
Query: 195 GTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRL 254
V+A FGL ++G +PA+Q P+ +F K CLIP IDQDPY+RL
Sbjct: 175 FNEVRATFGLDTSSNIGIIFYPALQIVPT-------MFEKRR---CLIPAGIDQDPYWRL 224
Query: 255 TRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSG 314
RD+A LGY K A IHS F P L G KMS+S +AI+LTD PK V+ K+ K+A+SG
Sbjct: 225 QRDIAESLGYFKAAQIHSKFLPPLTGPEGKMSSSQPETAIYLTDDPKTVERKIMKYAFSG 284
Query: 315 GQATVEEHRELGGNCDVDIAYQYLTFFLE-DDDKLEQIRKNYTSGALLTGELKKILIDTI 373
GQATVE HR+ GGN D+D+A+Q+L F E DD ++ +I ++Y SGA+LTGELK+IL+D +
Sbjct: 285 GQATVELHRKYGGNPDIDVAFQWLYMFFEPDDQRIRKIEEDYRSGAMLTGELKQILVDKL 344
Query: 374 TPIVTQHQE 382
+ +H+E
Sbjct: 345 NAFLEEHRE 353
>sp|Q976M1|SYW_SULTO Tryptophan--tRNA ligase OS=Sulfolobus tokodaii (strain DSM 16993 /
JCM 10545 / NBRC 100140 / 7) GN=trpS PE=3 SV=2
Length = 381
Score = 337 bits (865), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 179/371 (48%), Positives = 246/371 (66%), Gaps = 24/371 (6%)
Query: 17 GEDDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFS 76
+D V PW V K VDYDKLI +FG+ KI EL + + + N ++H +LRR +FFS
Sbjct: 2 AQDFNVTPWEVKGK----VDYDKLIVQFGTQKITSELKEKIKSIINDELHVMLRRDVFFS 57
Query: 77 HRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDE 136
HRD+ +L Y+ GK FFLYTGR PS MH+GHLIPF+FTKWLQD F+V L I++TDDE
Sbjct: 58 HRDLDLVLKDYQDGKGFFLYTGRAPSL-GMHIGHLIPFIFTKWLQDKFNVNLYIEITDDE 116
Query: 137 KSLWKNIKPE----EAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPSFYLNILKIQKL 192
K + +N PE + ++ AY+N IIA GF D TFIF D +++ + Y +KI K
Sbjct: 117 KFM-RN--PEYTLDQTRQWAYDNILDIIAVGFNPDKTFIFQDTEYIR-NMYPIAIKIAKK 172
Query: 193 VNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYF 252
+ + V+A FGL ++G +PA+Q AP+ +F K CLIP IDQDPY+
Sbjct: 173 LTFSEVRATFGLDTSSNIGIIWYPALQIAPT-------MFEKRR---CLIPAGIDQDPYW 222
Query: 253 RLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAY 312
RL RD+A LGY K A IHS F P L G KMS+S +AI+LTD PK V+ K+ K+A+
Sbjct: 223 RLQRDIAESLGYYKAAQIHSKFLPPLTGPEGKMSSSQPETAIYLTDDPKTVERKIMKYAF 282
Query: 313 SGGQATVEEHRELGGNCDVDIAYQYLTFFLE-DDDKLEQIRKNYTSGALLTGELKKILID 371
SGGQ T+E HR+ GGN D+D+++Q+L F E DD+K+++I ++Y SGALLTGELK+ILI+
Sbjct: 283 SGGQPTIELHRKYGGNPDIDVSFQWLYMFFEPDDNKIKKIEEDYRSGALLTGELKQILIE 342
Query: 372 TITPIVTQHQE 382
+ + +H++
Sbjct: 343 KLNDFLEEHRQ 353
>sp|Q97ZX0|SYW_SULSO Tryptophan--tRNA ligase OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=trpS PE=3 SV=2
Length = 380
Score = 321 bits (823), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 172/358 (48%), Positives = 235/358 (65%), Gaps = 25/358 (6%)
Query: 22 VDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSHRDMH 81
V PW V K VDYDKLI +FG+ KI +EL R + + +H +LRR +FFSHRD+
Sbjct: 7 VTPWEVKGK----VDYDKLIVQFGTQKITEELKQRIKNLAGD-LHVMLRRNVFFSHRDLD 61
Query: 82 SILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWK 141
+LN YE+ K FFLYTGR PS MH+GHLIPF+FTKWLQ+ F+ L I++TDDEK + +
Sbjct: 62 LVLNDYEKSKGFFLYTGRAPSL-GMHIGHLIPFIFTKWLQEKFNANLYIEITDDEKYM-R 119
Query: 142 NIKPE----EAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPSFYLNILKIQKLVNGTT 197
N PE + + AY+N IIA GF D TFIF D +++ + Y +KI K + +
Sbjct: 120 N--PEFTLDQTRSWAYDNILDIIAVGFNPDKTFIFQDTEYIR-NMYPITVKIAKKLTFSE 176
Query: 198 VKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRD 257
V+A FGL ++G +PA+Q AP+ +F K CLIP IDQDPY+RL RD
Sbjct: 177 VRATFGLDASSNIGLIFYPALQIAPT-------MFEKKR---CLIPAGIDQDPYWRLQRD 226
Query: 258 VAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQA 317
+A LGY K A IHS F P L G KMS+S+ +AI+L D PK V+ K+ K+A+SGGQ
Sbjct: 227 IAESLGYYKAAQIHSKFLPPLTGPEGKMSSSNPETAIYLVDDPKTVERKIMKYAFSGGQP 286
Query: 318 TVEEHRELGGNCDVDIAYQYLTFFLEDDD-KLEQIRKNYTSGALLTGELKKILIDTIT 374
T+E HR+ GGN ++D+ +Q+L +F E+DD ++++I + Y SG +LTGELK+ILID +
Sbjct: 287 TIELHRKYGGNPEIDVPFQWLYYFFEEDDNRIKEIEEEYRSGKMLTGELKQILIDKLN 344
>sp|Q8U453|SYW_PYRFU Tryptophan--tRNA ligase OS=Pyrococcus furiosus (strain ATCC 43587 /
DSM 3638 / JCM 8422 / Vc1) GN=trpS PE=3 SV=1
Length = 385
Score = 314 bits (805), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 174/370 (47%), Positives = 227/370 (61%), Gaps = 19/370 (5%)
Query: 18 EDDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSH 77
E+ V PW V +DY+KLI++FG+S + D+L+ R ++T ++ RR FFSH
Sbjct: 3 EEFKVTPWEVEGI----IDYNKLIEQFGTSPLTDDLLERTARLTKSELPIFFRRKFFFSH 58
Query: 78 RDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEK 137
RD +L+ YEQGK FFLYTGRGPS MH+GH+IPF TKWLQ+ FDV L IQ+TDDEK
Sbjct: 59 RDYDKVLDDYEQGKGFFLYTGRGPSG-PMHIGHIIPFFATKWLQEKFDVNLYIQITDDEK 117
Query: 138 SLWK-NIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPSFYLNILKIQKLVNGT 196
L+K N+ E+ K AY+N IIA GF D TFIF + +F Y + I K +N +
Sbjct: 118 FLFKENLTFEDTKYWAYQNILDIIAVGFDPDKTFIFQNSEFTK--IYEMAIPIAKKINFS 175
Query: 197 TVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTR 256
KA+FG + +G FPAIQAAP+F F K CLIP AIDQDPY+RL R
Sbjct: 176 MAKAVFGFTEQSKIGMIFFPAIQAAPTF-------FEKKR---CLIPAAIDQDPYWRLQR 225
Query: 257 DVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQ 316
D A LGY K A +HS FFP L G KMSAS +AI+LTD P++ K+ K A +GGQ
Sbjct: 226 DFAESLGYYKTAALHSKFFPPLTGLEGKMSASKPETAIYLTDNPEEAGKKIWKFALTGGQ 285
Query: 317 ATVEEHRELGGNCDVDIAYQYLTFFLE-DDDKLEQIRKNYTSGALLTGELKKILIDTITP 375
T++E RE GGN + + +++L F E DD KL + +G LL GE K+ LI +
Sbjct: 286 PTLKEQREKGGNPEKCVVFKWLEIFFEPDDKKLMERYYACKNGELLCGECKRYLIQRVQE 345
Query: 376 IVTQHQEAMK 385
+ +HQE K
Sbjct: 346 FLKEHQEKRK 355
>sp|Q9UY11|SYW_PYRAB Tryptophan--tRNA ligase OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=trpS PE=3 SV=1
Length = 385
Score = 304 bits (779), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 170/378 (44%), Positives = 230/378 (60%), Gaps = 23/378 (6%)
Query: 18 EDDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSH 77
ED V PW V VDY+KLI+ FG+S + +EL+ + ++T ++ RR FFSH
Sbjct: 3 EDFKVTPWEVEGV----VDYNKLIEHFGTSPLTEELLEKTAELTKSELPLFFRRKFFFSH 58
Query: 78 RDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEK 137
RD +L YE+G+ FFLYTGRGPS MH+GH+IPF TKWLQ+ F V L IQ+TDDEK
Sbjct: 59 RDYDKVLQDYEEGRGFFLYTGRGPSG-PMHIGHIIPFFATKWLQEKFGVNLYIQITDDEK 117
Query: 138 SLWK-NIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPSFYLNILKIQKLVNGT 196
L+K N+ E+ K AYEN IIA GF D TFIF + +F Y + I K +N +
Sbjct: 118 FLFKENLTFEDTKHWAYENILDIIAVGFDPDKTFIFQNSEFTK--IYEMAIPIAKKINFS 175
Query: 197 TVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTR 256
KA+FG + +G FPAIQ AP+F F K CLIP AIDQDPY+RL R
Sbjct: 176 MAKAVFGFTEQSKIGMIFFPAIQIAPTF-------FEKRR---CLIPAAIDQDPYWRLQR 225
Query: 257 DVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQ 316
D A LGY K A IHS F P+L + KMSAS +AI+LTD+P+ V+ KV K A +GG+
Sbjct: 226 DFAESLGYYKTAAIHSKFVPSLTSLSGKMSASKPETAIYLTDSPEDVEKKVWKFALTGGR 285
Query: 317 ATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTS---GALLTGELKKILIDTI 373
T++E RE GG + + +++L F E+DDK ++++ Y + G L GE K+ LI I
Sbjct: 286 PTLKEQREKGGEPEKCVVFKWLEIFFEEDDK--KLKERYYACKNGELTCGECKRYLISKI 343
Query: 374 TPIVTQHQEAMKGVTEEV 391
+ +HQ+ K +++
Sbjct: 344 QEFLKEHQKRRKKAEKQI 361
>sp|C6A032|SYW_THESM Tryptophan--tRNA ligase OS=Thermococcus sibiricus (strain MM 739 /
DSM 12597) GN=trpS PE=3 SV=1
Length = 384
Score = 300 bits (769), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 166/374 (44%), Positives = 228/374 (60%), Gaps = 23/374 (6%)
Query: 22 VDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSHRDMH 81
V PW VT VDY+KLI++FG++ + D+L+ + E++T K++ +R FFSHRD
Sbjct: 6 VTPWEVTGV----VDYNKLIEEFGTTPLTDDLLKKTEELTKKELPMYFKRKFFFSHRDYD 61
Query: 82 SILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWK 141
+L YE GK FFLYTGRGPS MH+GH+IPF TKWLQ+ F V L +Q+TDDEK L+K
Sbjct: 62 LVLKDYEAGKGFFLYTGRGPSG-PMHIGHIIPFFATKWLQENFGVNLYVQITDDEKFLFK 120
Query: 142 -NIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPSFYLNILKIQKLVNGTTVKA 200
+ E K+ AYEN IIA GF D TFIF D +F Y + I K V + KA
Sbjct: 121 PQLTFEGTKRWAYENILDIIAVGFDPDKTFIFQDSEFTK--IYEMAIPIAKKVTYSMAKA 178
Query: 201 IFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAP 260
+FG + +G FPAIQAAP+F F + LIP AIDQDPY+R+ RD A
Sbjct: 179 VFGFNEQSKIGMIFFPAIQAAPTF-------FEEKR---SLIPAAIDQDPYWRIQRDFAE 228
Query: 261 KLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQATVE 320
LGY K A +HS F P L G KMSAS +AI+LTD P++ K+ K+A +GG+AT +
Sbjct: 229 SLGYYKTAALHSKFVPGLMGLGGKMSASKPETAIYLTDDPEEAGKKIWKYALTGGRATAK 288
Query: 321 EHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTS---GALLTGELKKILIDTITPIV 377
E RELGG D + +++L F E D+K ++ + Y + G +L G+ K+ LI+ + +
Sbjct: 289 EQRELGGEPDKCVVFKWLEIFFEPDEK--KLLERYIACKNGEILCGQCKRYLIEKVQNFL 346
Query: 378 TQHQEAMKGVTEEV 391
+HQE + +E+
Sbjct: 347 KEHQEKREKAKKEI 360
>sp|O59584|SYW_PYRHO Tryptophan--tRNA ligase OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=trpS PE=1 SV=2
Length = 386
Score = 296 bits (759), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 166/372 (44%), Positives = 226/372 (60%), Gaps = 23/372 (6%)
Query: 18 EDDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSH 77
E+ V PW V VDYDKLIK FG+S + ++L+ + ++T ++ RR FFSH
Sbjct: 3 EEFKVTPWEVEG----VVDYDKLIKHFGTSPLTEDLLEKTAELTKSELPIFFRRKFFFSH 58
Query: 78 RDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEK 137
RD IL YE+G+ FFLYTGRGPS MH+GH+IPF TKWLQ+ F V L IQ+TDDEK
Sbjct: 59 RDYDLILKDYEEGRGFFLYTGRGPSG-PMHIGHIIPFFATKWLQEKFGVNLYIQITDDEK 117
Query: 138 SLWK-NIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPSFYLNILKIQKLVNGT 196
L+K N+ ++ K+ AY+N IIA GF D TFIF + +F Y + I K +N +
Sbjct: 118 FLFKENLTFDDTKRWAYDNILDIIAVGFDPDKTFIFQNSEFTK--IYEMAIPIAKKINFS 175
Query: 197 TVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTR 256
KA+FG + +G FPAIQ AP+F F + CLIP AIDQDPY+RL R
Sbjct: 176 MAKAVFGFTEQSKIGMIFFPAIQIAPTF-------FERKR---CLIPAAIDQDPYWRLQR 225
Query: 257 DVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQ 316
D A LGY K A +HS F P+L + KMSAS +AI+LTD+P+ V+ KV K +GG+
Sbjct: 226 DFAESLGYYKTAALHSKFVPSLTSLSGKMSASKPETAIYLTDSPEDVEKKVWKFTLTGGR 285
Query: 317 ATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTS---GALLTGELKKILIDTI 373
T++E RE GG + + +++L F E+DDK ++++ Y + G L GE K+ LI I
Sbjct: 286 PTLKEQREKGGEPEKCVVFKWLEIFFEEDDK--KLKERYYACKNGELTCGECKRYLISKI 343
Query: 374 TPIVTQHQEAMK 385
+ +HQ K
Sbjct: 344 QEFLKEHQRRRK 355
>sp|B6YUH1|SYW_THEON Tryptophan--tRNA ligase OS=Thermococcus onnurineus (strain NA1)
GN=trpS PE=3 SV=1
Length = 384
Score = 295 bits (754), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 171/372 (45%), Positives = 227/372 (61%), Gaps = 19/372 (5%)
Query: 22 VDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSHRDMH 81
V PW+V VDY+KLI++FG+S + DEL+ + ++T ++ RR FFSHRD
Sbjct: 6 VTPWDVEGL----VDYNKLIEEFGTSPLTDELLEKTAQLTKSELPLYFRRRFFFSHRDYD 61
Query: 82 SILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWK 141
+L YE GK FFLYTGRGPS MH+GH+IPF TKWLQ+ F V L IQ+TDDEK L+K
Sbjct: 62 KVLQDYESGKGFFLYTGRGPSG-PMHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFK 120
Query: 142 N-IKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPSFYLNILKIQKLVNGTTVKA 200
+ + E+ K AY+N IIA GF D TFIF D +F Y + I K +N + KA
Sbjct: 121 DKLTFEDTKYWAYQNILDIIAVGFDPDRTFIFQDSEFTK--IYEMAIPIAKKINFSMAKA 178
Query: 201 IFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAP 260
+FG + +G +PAIQAAP+F F K CLIP AIDQDPY+RL RD A
Sbjct: 179 VFGFTEQSKIGMIFYPAIQAAPTF-------FEKKR---CLIPAAIDQDPYWRLQRDFAE 228
Query: 261 KLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQATVE 320
LGY K A IHS F P L G KMSAS +AI+LTD P++V K+ K+A +GG+AT +
Sbjct: 229 SLGYYKTAAIHSKFVPGLMGLEGKMSASKPETAIYLTDDPEEVGRKIWKYALTGGRATAK 288
Query: 321 EHRELGGNCDVDIAYQYLT-FFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQ 379
E RE GG + + +++L FF EDD KL + +G LL G+ K+ LI + + +
Sbjct: 289 EQREKGGEPEKCVVFKWLEIFFEEDDKKLMERYHACKNGELLCGQCKRYLIKKVQEFLKE 348
Query: 380 HQEAMKGVTEEV 391
HQ+ K ++V
Sbjct: 349 HQKKRKEAEKKV 360
>sp|A3MX72|SYW_PYRCJ Tryptophan--tRNA ligase OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=trpS PE=3 SV=1
Length = 374
Score = 293 bits (751), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 166/383 (43%), Positives = 229/383 (59%), Gaps = 14/383 (3%)
Query: 18 EDDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSH 77
E+ VV PW V + VDY KL+++FG+ + ++ EK + VH L+RRG F++H
Sbjct: 3 EEFVVTPWEVRGR----VDYQKLMQQFGARPLTQAEVSLLEKYAGE-VHPLIRRGFFYAH 57
Query: 78 RDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEK 137
RD+ +IL + +GKP+ LYTGRGPS +H+GH++P++ KWL D F V + Q+TDDEK
Sbjct: 58 RDLDAILKWHGEGKPWALYTGRGPSG-PVHIGHMVPWILLKWLSDKFGVEVYFQMTDDEK 116
Query: 138 SLW-KNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPSFYLNILKIQKLVNGT 196
++ EEA K AYENA +IA GF D + D + P Y K+ K +
Sbjct: 117 FYDDPEMRLEEATKWAYENALDVIALGFTPDKLHLIIDTKDIKP-LYPIAAKVAKKLTWN 175
Query: 197 TVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTR 256
TVKA FG D ++G +P++Q A +F T P LIPCAIDQDPYFRL R
Sbjct: 176 TVKATFGFTDSTNIGLIFYPSLQIAVAFLPTE----LHGRPTPVLIPCAIDQDPYFRLAR 231
Query: 257 DVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQ 316
D+A LGY KPA ++S F AL G +KMSAS+ NSAI+ D K ++ K+ +AY+GG+
Sbjct: 232 DIAESLGYPKPATLYSKFIMALTG-ESKMSASNPNSAIYTIDDEKTIRRKI-ANAYTGGR 289
Query: 317 ATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPI 376
T EE R LGGN DV Y Y F DD +E+I + SGALL GE K++L + I
Sbjct: 290 PTAEEQRRLGGNPDVCPVYHYHMLFDPDDASVEKIYHSCKSGALLCGECKQMLYEKIRKF 349
Query: 377 VTQHQEAMKGVTEEVLAQYMTPR 399
V QHQEA + ++V A ++ +
Sbjct: 350 VKQHQEAREKARDKVDAYRLSSK 372
>sp|Q5JEP3|SYW_PYRKO Tryptophan--tRNA ligase OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=trpS PE=3 SV=1
Length = 384
Score = 291 bits (746), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 168/376 (44%), Positives = 228/376 (60%), Gaps = 19/376 (5%)
Query: 18 EDDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSH 77
+D V PW+V VDY+KLI++FG+S + DELI + ++T ++ RR FFSH
Sbjct: 2 DDFKVTPWDVEGV----VDYNKLIEQFGTSPLTDELIEKTAELTKSELPLFFRRRFFFSH 57
Query: 78 RDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEK 137
RD +L YE G+ FFLYTGRGPS MH+GH+IPF TKWLQ+ FDV L IQ+TDDEK
Sbjct: 58 RDYDKVLADYESGRGFFLYTGRGPSG-PMHIGHIIPFFATKWLQENFDVNLYIQITDDEK 116
Query: 138 SLWKN-IKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPSFYLNILKIQKLVNGT 196
L+K + E+ K+ AYEN IIA GF D TFIF + +F Y L I K +N +
Sbjct: 117 FLFKEKLSFEDTKRWAYENILDIIAVGFDPDKTFIFQNSEFTK--IYEMALPIAKKINFS 174
Query: 197 TVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTR 256
+A+FG + +G +PAIQAAP+F F K CLIP AIDQDPY+RL R
Sbjct: 175 MARAVFGFNEQSKIGMIFYPAIQAAPTF-------FEKKR---CLIPAAIDQDPYWRLQR 224
Query: 257 DVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQ 316
D A LGY K A IHS F P L KMSAS +A++LTD P++ K+ K A +GGQ
Sbjct: 225 DFAESLGYYKTAAIHSKFVPGLTSLEGKMSASKPETAVYLTDDPEEAGKKIWKFALTGGQ 284
Query: 317 ATVEEHRELGGNCDVDIAYQYLTFFLE-DDDKLEQIRKNYTSGALLTGELKKILIDTITP 375
T++E RE GGN + + +++ F E DD+KL + + +G L G+ K+ LI+ +
Sbjct: 285 PTLKEQREKGGNPEKCVVFKWFEIFFEPDDEKLMERYRACKAGELTCGQCKRELIERVQK 344
Query: 376 IVTQHQEAMKGVTEEV 391
+ +HQ+ K ++V
Sbjct: 345 FLKEHQKKRKEAEKKV 360
>sp|A4WL99|SYW_PYRAR Tryptophan--tRNA ligase OS=Pyrobaculum arsenaticum (strain DSM
13514 / JCM 11321) GN=trpS PE=3 SV=1
Length = 374
Score = 277 bits (709), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 163/387 (42%), Positives = 228/387 (58%), Gaps = 15/387 (3%)
Query: 17 GEDDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFS 76
GED VV PW V K VDY+KL+++FG+ + E +A EK VH L++RG F++
Sbjct: 2 GEDFVVTPWEVRGK----VDYEKLLRQFGAKPLTAEEVALLEKYAGD-VHPLIKRGFFYA 56
Query: 77 HRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDE 136
HRD IL + +G+P+ LYTGRGPS +H+GH++P++ KW D F V + Q+TDDE
Sbjct: 57 HRDFDFILKWHGEGRPWALYTGRGPSG-PVHIGHMVPWILLKWFSDKFGVEVYFQMTDDE 115
Query: 137 KSLWK-NIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPSFYLNILKIQKLVNG 195
K +K EEA AYENA +IA GF D + D + P Y +++ K +
Sbjct: 116 KFFDDPEMKLEEATGWAYENALDVIALGFGPDKLHLIVDTKDIAP-LYPIAVRVAKKLTW 174
Query: 196 TTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLT 255
TVKA FG D ++G +P++Q A +F T K P LIPCAIDQDPYFRL
Sbjct: 175 NTVKATFGFTDSSNIGLIFYPSLQIAVAFLPTE----LKKEPTPVLIPCAIDQDPYFRLA 230
Query: 256 RDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGG 315
RD+A L Y KP ++S F AL G +KMSAS+ +SAI+ D K VK+K+ +A++GG
Sbjct: 231 RDIADSLSYPKPTTLYSKFIMALTG-ESKMSASNPDSAIYTMDDDKTVKHKI-LNAFTGG 288
Query: 316 QATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITP 375
+ T EE R+ GGN D+ + Y F DD +E+IR++ SGALL GE K L + I+
Sbjct: 289 RPTAEEQRKYGGNPDICPVFHYHMLFDPDDASVEKIRQDCKSGALLCGECKLKLHEKISK 348
Query: 376 IVTQHQEAMKGVTEEVLAQYMTPRKLK 402
+ +H+E + +V +Y KLK
Sbjct: 349 FLKEHRERREKARGKV-DEYRLSVKLK 374
>sp|Q8ZTU5|SYW_PYRAE Tryptophan--tRNA ligase OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827) GN=trpS
PE=3 SV=1
Length = 375
Score = 273 bits (698), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 154/366 (42%), Positives = 220/366 (60%), Gaps = 14/366 (3%)
Query: 18 EDDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSH 77
E+ VV PW V + VDY+KL+K FG+ + + +A EK + VH L+RRG F++H
Sbjct: 3 EEFVVTPWEVRGR----VDYEKLLKHFGAKPLTKDEVALLEKYAGE-VHPLIRRGFFYAH 57
Query: 78 RDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEK 137
RD I+ + +G+P+ LYTGRGPS +H+GH++P++ KW D F + + Q+TDDEK
Sbjct: 58 RDFDFIMKWHGEGRPWALYTGRGPSG-PVHIGHMVPWILLKWFSDKFGLEVYFQITDDEK 116
Query: 138 SLWK-NIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPSFYLNILKIQKLVNGT 196
+K EEA AYENA +IA GF + + D + P Y +++ K +
Sbjct: 117 FYDDPEMKLEEATNWAYENALDVIALGFSPERLHLIIDTKDIKP-LYPIAVRVAKKLTWN 175
Query: 197 TVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTR 256
TVKA FG D ++G +P++Q A +F T + P LIPCAIDQDPYFRL R
Sbjct: 176 TVKATFGFTDSTNIGLIFYPSLQIAVAFLPTE----LRREATPVLIPCAIDQDPYFRLAR 231
Query: 257 DVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQ 316
D+A LGY KP+ ++S F AL G +KMSAS+ +SAI+ D K V+ KV +A++GG+
Sbjct: 232 DIADALGYPKPSTLYSKFIMALTG-ESKMSASNPDSAIYTLDDEKTVRRKV-MNAFTGGR 289
Query: 317 ATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPI 376
T EE R+ GGN +V + Y F DD +E+IR++ SGALL GE K L + IT
Sbjct: 290 PTAEEQRKYGGNPEVCPVFHYHMLFDPDDASVEKIRQDCKSGALLCGECKLKLHEKITKF 349
Query: 377 VTQHQE 382
+ +H+E
Sbjct: 350 LKEHRE 355
>sp|Q9HN66|SYW2_HALSA Tryptophan--tRNA ligase 2 OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=trpS2 PE=3 SV=1
Length = 380
Score = 219 bits (558), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 146/390 (37%), Positives = 212/390 (54%), Gaps = 32/390 (8%)
Query: 14 TVDGEDDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGI 73
T DG D V P+ V S + DY+KL+ +FG+ ++ D+ ARF H L+ RG+
Sbjct: 2 TADGND--VTPYAVESDDL---DYEKLLARFGADELTDDQRARFPD------HPLVNRGL 50
Query: 74 FFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLT 133
F++ RD+ L EQ + TG GPS MHLGH + F F + LQD F + + L+
Sbjct: 51 FYAGRDVDDFLTAGEQS----IVTGVGPSG-PMHLGHAMVFYFARRLQDEFGARVYVPLS 105
Query: 134 DDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPSFYLNILKIQKLV 193
DDEK +K+ P E N + ++A GF + T I D + Y V
Sbjct: 106 DDEKYWFKDQTPAETGDYLRANLRDLLAVGFDPELTRIVVDTRDAD-VLYPLATAFAGDV 164
Query: 194 NGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFR 253
T++ ++G + D+VG+ +PA+Q A P + + H+ L+P A+DQDP+ R
Sbjct: 165 RHATLQNVYG--EPDNVGQAFYPAVQTAHLL---LPQLVHGEHE--TLVPIAVDQDPHVR 217
Query: 254 LTRDVAPKLGYV--KPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHA 311
++RDVA K Y KP + F P+L G KMS+S +I LTD+P V+ KV HA
Sbjct: 218 VSRDVAAKARYPVGKPGALLMQFLPSLAGPG-KMSSS-AGVSIRLTDSPDTVREKVRTHA 275
Query: 312 YSGGQATVEEHRELGGNCDVDIAYQYLTFFLE-DDDKLEQIRKNYTSGALLTGELKKILI 370
Y+GG+A+VEEHR GG D+ +QYL+ F E DD +L +I + Y +G LL+GELK +
Sbjct: 276 YTGGRASVEEHRAKGGVPAEDVPFQYLSAFFEPDDAELARIEREYRAGDLLSGELKDLAA 335
Query: 371 DTITPIVTQHQE---AMKGVTEEVLAQYMT 397
D IT + HQ A+ VTE + A +T
Sbjct: 336 DRITEFLAAHQRRRAALGDVTEALDAFRLT 365
>sp|Q8TYF7|SYW_METKA Tryptophan--tRNA ligase OS=Methanopyrus kandleri (strain AV19 / DSM
6324 / JCM 9639 / NBRC 100938) GN=trpS PE=3 SV=1
Length = 374
Score = 176 bits (446), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 126/382 (32%), Positives = 188/382 (49%), Gaps = 36/382 (9%)
Query: 21 VVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDE----LIARFEKVTNKKVHHLLRRGIFFS 76
++DPW+V VDY++L ++FG ID++ L RF LL RGI F
Sbjct: 1 MIDPWDVEE-----VDYERLTEEFGIRPIDEKVRELLPRRFP---------LLDRGIVFG 46
Query: 77 HRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDE 136
HRD S L Y GK + +G PS MHLGH + Q DV + + + D E
Sbjct: 47 HRDYDSFLKDYNDGKLVSVLSGMMPSG-RMHLGHKTVVDQLVFYQQEMDVKVYVPIADLE 105
Query: 137 KSLWKNIKPEEAKKLAYEN---AKAIIACGFKQDSTFIFSDIDFMNPSFYLNILKIQKLV 193
+N+ + A ++A E A + D I+ + + L + +
Sbjct: 106 AHHARNMDLDRAHRIAVEEYVLNYAALGLDLDPDRCEIY--LQSERKTVQRMALLLAGRL 163
Query: 194 NGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFR 253
TVK +G ++G P +QAA P H+V L+P +DQDP+ R
Sbjct: 164 TWNTVKNTYGFTGETNMGHAFAPIVQAADIL---HPQEIEGPHRV--LVPVGVDQDPHLR 218
Query: 254 LTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYS 313
LTRD+A K +KPA + F L G KMS+S N+AIFLTD P+ K KV +A +
Sbjct: 219 LTRDIAEKEDLIKPASTYHRFMTGLTGG--KMSSSKPNTAIFLTDDPETAKEKV-WNAKT 275
Query: 314 GGQATVEEHRELGGNCDVDIAYQYLTFFLED----DDKLEQIRKNYTSGALLTGELKKIL 369
GG AT+EEHRE GGN D + Y+ + + L D D+KL +IRK G ++ GE K+++
Sbjct: 276 GGGATLEEHREHGGNPDECVVYELMVYHLADRIGGDEKLREIRKKCREGDIICGECKRMV 335
Query: 370 IDTITPIVTQHQEAMKGVTEEV 391
+ + I+ + + + V +E+
Sbjct: 336 GEALAEILEELERRREDVRDEL 357
>sp|O26352|SYW_METTH Tryptophan--tRNA ligase OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=trpS PE=3 SV=1
Length = 364
Score = 145 bits (365), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 106/357 (29%), Positives = 181/357 (50%), Gaps = 35/357 (9%)
Query: 21 VVDPWNVTSKSMTGVDYDKLIKKFGS---SKIDDELIARFEKVTNKKVHHLLRRGIFFSH 77
++DPW ++Y LI+ FG S++ DE+ + L+RRGI F H
Sbjct: 1 MIDPWGSAK-----LEYQDLIENFGVRPFSEVLDEV---------PEPSWLMRRGIIFGH 46
Query: 78 RDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEK 137
RD I++ ++G+ F + TG PS MH+GH + +W D + I + D E
Sbjct: 47 RDYERIISAMKKGEDFAVVTGMMPSG-RMHIGHKMIVDQLRWY-DRMGAEIFIPIADMEA 104
Query: 138 SLWKNIKPEEAKKLAYENAKA-IIACG--FKQDSTFIFSDIDFMNPSFYLNILKIQKLVN 194
+ + E+++++A E A IA G ++D+ ++ + + +L + VN
Sbjct: 105 YSARGVDFEDSRRIAIEEYIAGYIALGLDLEKDNIHVYLQSENLMVEDLAYVLAGK--VN 162
Query: 195 GTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRL 254
++AI+G S+ P IQ + P + P ++P DQDP+ RL
Sbjct: 163 FNELRAIYGFTGSTSMAHMYAPIIQVSDILH---PQLDELGGPRPVIVPVGPDQDPHIRL 219
Query: 255 TRDVAPKL----GYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKH 310
TRD+A + G++ P+ + F L G KMS++ SAIFL+DTP++ + K+ ++
Sbjct: 220 TRDIAARFRDRYGFILPSSTYHRFMGGLTGG--KMSSNRPKSAIFLSDTPEEAEAKI-RN 276
Query: 311 AYSGGQATVEEHRELGGNCDVDIAYQYLTFFLE-DDDKLEQIRKNYTSGALLTGELK 366
A +GG+ T++E RELGG + I Y+ L + + D +LE+I ++ +G L+ GE K
Sbjct: 277 AKTGGRETLKEQRELGGVPEECIIYETLLYHMSGSDSRLEEIYESCRNGTLMCGECK 333
>sp|A2BLD4|SYW_HYPBU Tryptophan--tRNA ligase OS=Hyperthermus butylicus (strain DSM 5456
/ JCM 9403) GN=trpS PE=3 SV=1
Length = 373
Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 120/388 (30%), Positives = 181/388 (46%), Gaps = 28/388 (7%)
Query: 22 VDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSHRDMH 81
+DPW S ++Y+KL + FG L+ EK K H L+RRGI F HRD
Sbjct: 6 LDPWA----SAIRLEYEKLFRYFGIKPFQP-LLPEVEKAFGKP-HRLMRRGIIFGHRDYE 59
Query: 82 SILNLYEQGKPFFLYTGRGPSSDSMHLGH-LIPFMFTKWLQDVFDVPLVIQLTDDEKSLW 140
IL Y G+ L TG PS H GH ++ + + F++ +VI D E
Sbjct: 60 KILEAYRSGERIALVTGFMPSG-KFHFGHKMVADQIIYYQKLGFEIFVVI--ADAEAYAV 116
Query: 141 KNIKPEEAKKLA-YENAKAIIACGFKQDS-TFIFSDIDFMNPSFYLNILKIQKLVNGTTV 198
+ + + ++ YE +IA G +++ T I+ ++ P +Y I + V +
Sbjct: 117 RRLDRRKIIEIGLYEYVANLIALGLEKNKHTHIYFQTNYETP-YYRLIQMFSRRVTLEEM 175
Query: 199 KAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDV 258
AI+G D + K QAA + V +P DQDP+ RLTRD+
Sbjct: 176 SAIYG--DLEP-SKIMAALTQAADILHPQLDYFGGFKYVV---VPVGADQDPHIRLTRDI 229
Query: 259 APK----LGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSG 314
A + LG +PA + F L G KMS+S IFLTD P + + K A +G
Sbjct: 230 AARFENELGLRRPASTYHRFQTGLDG--NKMSSSRPEYTIFLTD-PVDIAVRKLKRALTG 286
Query: 315 GQATVEEHRELGGNCDVDIAYQ-YLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTI 373
G+ATVEE R LGG + Y+ YL +EDD +L +I ++ LL G K+ + +
Sbjct: 287 GRATVEEQRRLGGEPEKCTVYEFYLYHLIEDDTQLRKIYEDCRGSRLLCGPDKEYAAELL 346
Query: 374 TPIVTQHQEAMKGVTEEVLAQYMTPRKL 401
+ +HQ ++ + VL +Y+ P K
Sbjct: 347 AKFLEEHQRRLERARDRVL-EYVEPPKF 373
>sp|Q9Y924|SYW_AERPE Tryptophan--tRNA ligase OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=trpS PE=1
SV=2
Length = 372
Score = 137 bits (344), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 117/371 (31%), Positives = 172/371 (46%), Gaps = 26/371 (7%)
Query: 22 VDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSHRDMH 81
+DPW DYD+L++ FG E++ K + L+RRGI F HRD
Sbjct: 6 LDPWGAVEIK----DYDRLLRTFGIRPFS-EVLPLLRK-AGMEPSFLMRRGIIFGHRDFD 59
Query: 82 SILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQ-DVFDVPLVIQLTDDEKSLW 140
IL +G+ + TG PS H GH + +LQ + F V + + D E
Sbjct: 60 KILEAKARGERVAVLTGFMPSG-KFHFGHKLTVDQLIYLQKNGFKV--FVAIADAEAFAV 116
Query: 141 KNIKPEEAKKLAYENAKA-IIACGFKQDSTFIFSDIDFMNPSFYLNILKIQKLVNGTTVK 199
+ I EEA ++A E A +IA G T + + P F L L K V ++
Sbjct: 117 RRIGREEAVRIAVEEYIANMIALGLDPKDTEFYFQTNRGTPYFRLIQLFSGK-VTAAEME 175
Query: 200 AIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVA 259
AI+G + K QAA H V +P DQDP+ RLTRD+A
Sbjct: 176 AIYGEL---TPAKMMASLTQAADILHVQLDEYGGYRHVV---VPVGADQDPHLRLTRDLA 229
Query: 260 PKLGYV----KPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGG 315
++ V +PA + P L G KMS+S +S IFLTD P+ +NK+ + A +GG
Sbjct: 230 DRMAGVVELERPASTYHKLQPGLDG--RKMSSSRPDSTIFLTDPPEVARNKLFR-ALTGG 286
Query: 316 QATVEEHRELGGNCDVDIAYQY-LTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTIT 374
+AT EE R LGG +V Y L + DD +++ I + G +L GE K+I + +
Sbjct: 287 RATAEEQRRLGGVPEVCSVYHMDLYHLMPDDGEVKHIYTSCRLGKILCGECKQIAWEKLE 346
Query: 375 PIVTQHQEAMK 385
+ +HQ ++
Sbjct: 347 RFLAEHQSRLE 357
>sp|Q58810|SYW_METJA Tryptophan--tRNA ligase OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=trpS PE=3 SV=1
Length = 370
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 110/375 (29%), Positives = 168/375 (44%), Gaps = 31/375 (8%)
Query: 24 PWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSHRDMHSI 83
PW + +DY K +++FG I D L K+ HH RR I HRD I
Sbjct: 8 PWETPAV----IDYKKTMEQFGVKPIVDVL------GDLKEEHHFFRRNIILGHRDFERI 57
Query: 84 LNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKNI 143
++ + K F + +G PS MH GH + K+ Q D + I + D E +N+
Sbjct: 58 VDAIKNNKEFAVVSGMMPSG-KMHFGHKMVVDLLKFYQKYTD-NINIPIADLEAYWARNM 115
Query: 144 KPEEAKKLAY-ENAKAIIACGFKQDSTFIFSDIDFMNPSFYLNILKIQKLVNGTTVKAIF 202
E K+LA E IA G + ++ + IL K N + +KAI+
Sbjct: 116 SFETTKELALNEYITNYIALGLDPEKINVYLQSKYQKVKDLALIL--SKRTNWSEMKAIY 173
Query: 203 GLKDFDSVGKFSFPAIQAA----PSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDV 258
G K ++G P +Q A P IDQDP+ RLTRD+
Sbjct: 174 GFKGETNIGHVFAPIVQVADILHPQLDENLSPEPKPVVVPV-----GIDQDPHIRLTRDI 228
Query: 259 APK---LGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGG 315
A + ++ P+ + F L G KMS+S +AIFLTD K VK K+ A +GG
Sbjct: 229 ANRAKEFKFIPPSSTYHRFMTGLLGG--KMSSSKPETAIFLTDDEKTVKKKIFS-AKTGG 285
Query: 316 QATVEEHRELGGNCDVDIAYQ-YLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTIT 374
+ T+EEH++ GG + + Y+ +L + DD +L +I + SG L G+ KK+ + +
Sbjct: 286 RETLEEHKKYGGVPEECVVYELFLYHLILDDKELAEIYQKCRSGELTCGKCKKMAYERVV 345
Query: 375 PIVTQHQEAMKGVTE 389
+ +E + E
Sbjct: 346 EFLKDLKEKREQAKE 360
>sp|O28579|SYW_ARCFU Tryptophan--tRNA ligase OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=trpS PE=3 SV=1
Length = 420
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 115/243 (47%), Gaps = 22/243 (9%)
Query: 22 VDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSHRDMH 81
V PW V +DY KLI++FG + L ++ N H L+RRG F HRD
Sbjct: 3 VTPWEVEGV----IDYSKLIEEFGMQPFSEVL----PEIDNP--HILMRRGAIFGHRDYW 52
Query: 82 SILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWK 141
I+ ++ +P+ + +G PS H GH + W Q V + D E +
Sbjct: 53 RIIEAMQKKEPWAVMSGFMPSGLP-HFGHKMTMDEIVWHQSAGGKAFV-AIADMEAHSVR 110
Query: 142 NIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPSFYLNIL--KIQKLVNGTTVK 199
+ E+ ++L K+IIA G ++D+ I F + S ++ L ++ VN + ++
Sbjct: 111 GLSWEKTRELGMLYIKSIIALGLREDAV-----IYFQSKSSHVKDLAFELSAEVNFSELR 165
Query: 200 AIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVA 259
AI+G S+ K AIQAA P + + P ++P DQDP+ RLTRD+A
Sbjct: 166 AIYGFNSDTSLAKMFVTAIQAADILH---PQLSDFGGPKPVVVPVGADQDPHMRLTRDLA 222
Query: 260 PKL 262
++
Sbjct: 223 ARI 225
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 75/139 (53%), Gaps = 7/139 (5%)
Query: 253 RLTRDVAPKLG---YVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNK 309
R R + ++G ++ P+ + F L G KMS+S S I L D P++ KV K
Sbjct: 276 RAVRKIEVEIGGFAFIPPSSTYHRFTTGLTGG--KMSSSKPESYISLLDPPEEGAKKVMK 333
Query: 310 HAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLED-DDKLEQIRKNYTSGALLTGELKKI 368
A++GG+AT EE R LGG D + ++ +F L D D++L QI G LL G+ KK+
Sbjct: 334 -AFTGGRATAEEQRRLGGEPDRCVVFELYSFHLIDSDEELNQIEAECREGRLLCGKCKKM 392
Query: 369 LIDTITPIVTQHQEAMKGV 387
+ + + +HQE M+ V
Sbjct: 393 AAELVKSFLKEHQEKMEAV 411
>sp|Q8PWV5|SYW_METMA Tryptophan--tRNA ligase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=trpS PE=3 SV=2
Length = 491
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 109/254 (42%), Gaps = 37/254 (14%)
Query: 19 DDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNK--KVHHLLRRGIFFS 76
D+ +DPW +S ++T DY KL ++FG I+ FE + + H +RR I F
Sbjct: 2 DNKLDPW--SSSNIT--DYSKLFEEFG--------ISPFENILPEIPSPHKYMRRRIIFG 49
Query: 77 HRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDE 136
HRD I G PF + G PS +HLGH + W Q+ + + D E
Sbjct: 50 HRDYEQIAEAMRTGAPFSVMDGFMPSG-KVHLGHKMVMDQIVWHQEK-GASAFVGIADRE 107
Query: 137 KSLWKNIKPEEAKKLAYEN-AKAIIACGFKQDSTFIFS-------DIDFMNPSFYLNILK 188
+ ++ +++ E ++IA GFK + F D+ F +
Sbjct: 108 AFSVRGFSWQKCREIGVEEYILSLIALGFKPEGLIYFQSGCGSVKDLAF----------E 157
Query: 189 IQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQ 248
+ VN + + AI+G S+ A QAA P + P ++P DQ
Sbjct: 158 LGAKVNFSELSAIYGFSGETSLSHMLSVATQAADILQ---PQLEEFGGSKPVVVPVGPDQ 214
Query: 249 DPYFRLTRDVAPKL 262
DP+ RLTR +A K+
Sbjct: 215 DPHLRLTRGLAGKM 228
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 73/133 (54%), Gaps = 5/133 (3%)
Query: 264 YVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQATVEEHR 323
++ PA + F LQG KMS+S +S I LTD PK+ KV K A +GG T+EE +
Sbjct: 357 FIPPASTYHRFMSGLQGG--KMSSSIPDSHIALTDDPKEGAKKV-KRAKTGGCITLEEQK 413
Query: 324 ELGGNCDVDIAYQYLTFFL-EDDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQHQE 382
+LGG D ++ + F L EDD++L +IR+ G + G K++ + + + HQE
Sbjct: 414 KLGGKPDECSVFELMLFHLIEDDEELLEIREECIYGTRMCGSCKQLAAEKMQEFLKDHQE 473
Query: 383 AMKGVTEEVLAQY 395
+ + E L +Y
Sbjct: 474 K-RELAREQLDEY 485
>sp|Q9HN83|SYW1_HALSA Tryptophan--tRNA ligase 1 OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=trpS1 PE=3 SV=1
Length = 513
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 107/259 (41%), Gaps = 46/259 (17%)
Query: 21 VVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNK--KVHHLLRRGIFFSHR 78
+DPW S T DY L +FG I FE V + H L+RR I F HR
Sbjct: 16 ALDPWG----SATISDYRALFDEFG--------IEAFEDVLDGVPTPHSLMRRAIIFGHR 63
Query: 79 DMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKS 138
D + +PF +G P+ D H+GH + F W Q Q D +
Sbjct: 64 DYRRVAAAMRNDEPFAALSGFMPTGDP-HIGHKMVFDELIWHQ---------QQGGDAYA 113
Query: 139 LWKNIKPEEAKKLAY----ENAK----AIIACGFKQDSTFIF---SDIDFMNPSFYLNIL 187
L +++ A+ L + E+A+ +++A GF D ++ ++ + + +F L I
Sbjct: 114 LIADLEAHSARGLDWAEIDEHAEDYLLSLLALGFDADEGELYRQSTNRELQDLAFELGI- 172
Query: 188 KIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAID 247
N + +AI+G V Q A +P + + P +IP D
Sbjct: 173 ----EANTSEFEAIYGFGGDTDVSHMQSVVTQMADIL---YPQL---DAPKPTVIPVGPD 222
Query: 248 QDPYFRLTRDVAPKLGYVK 266
QDP+ R RD+A + Y K
Sbjct: 223 QDPHVRFARDLAERTRYFK 241
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 66/134 (49%), Gaps = 6/134 (4%)
Query: 263 GYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQATVEEH 322
G+V P+ ++ F L G KMS+S+ S I L D P+ +KV A +GG+ T E
Sbjct: 374 GFVPPSSVYHRFMTGLTGG--KMSSSEPASHISLLDDPETGADKVAA-ATTGGRDTAAEQ 430
Query: 323 RELGGNCDVDIAYQYLTFFLE-DDDKL-EQIRKNYTSGALLTGELKKILIDTITPIVTQH 380
RE GG D Y+ + L DDD L E++ +G L G K+ D + + H
Sbjct: 431 RERGGEPDDCPVYELYAYLLAGDDDALAEEVYAECANGDRLCGGCKEQAADLMAQFLETH 490
Query: 381 QEAMKGVTEEVLAQ 394
QE + +VLA+
Sbjct: 491 QE-NREAARDVLAE 503
>sp|Q8TUA1|SYW_METAC Tryptophan--tRNA ligase OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=trpS PE=3 SV=1
Length = 437
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 79/147 (53%), Gaps = 8/147 (5%)
Query: 253 RLTRDVAPKLG---YVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNK 309
+L R+V + G ++ PA + F LQG KMS+S S I LTD+PK+ KV K
Sbjct: 289 KLVREVTVEFGGYAFIPPASTYHRFMSGLQGG--KMSSSIPESQIALTDSPKEGAKKV-K 345
Query: 310 HAYSGGQATVEEHRELGGNCDVDIAYQYLTFFL-EDDDKLEQIRKNYTSGALLTGELKKI 368
A +GG T+EE ++LGG + ++ + F L D++L +I++ SG + G K++
Sbjct: 346 RAKTGGCVTLEEQKKLGGKPEECSVFELMLFHLIASDEELLEIKQECISGTRMCGSCKQL 405
Query: 369 LIDTITPIVTQHQEAMKGVTEEVLAQY 395
+ + + HQE + + E L +Y
Sbjct: 406 AAEKMQEFLKDHQEK-RELAREHLDEY 431
Score = 68.6 bits (166), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 106/247 (42%), Gaps = 23/247 (9%)
Query: 19 DDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNK--KVHHLLRRGIFFS 76
D +DPW +S +T DY KL ++FG I+ FE V + H +RR + F
Sbjct: 2 DTKLDPW--SSSDIT--DYSKLFEEFG--------ISPFENVLPEIPSPHMYMRRKVIFG 49
Query: 77 HRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDE 136
HRD I G PF + G PS +HLGH + W Q++ + + D E
Sbjct: 50 HRDYEQIAEAMRTGAPFSVMDGFMPSG-KVHLGHKMVMDQIVWHQEM-GASAFVGIADRE 107
Query: 137 KSLWKNIKPEEAKKLAYEN-AKAIIACGFKQDSTFIFSDIDFMNPSFYLNILKIQKLVNG 195
+ ++ +++ E ++IA GFK D F S ++ VN
Sbjct: 108 AFSVRGFSWQKCREIGVEEYILSLIALGFKPDGLIYFQS---GCGSVKDLAFELGAKVNF 164
Query: 196 TTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLT 255
+ + AI+G S+ A QAA P + P ++P DQDP+ RLT
Sbjct: 165 SELSAIYGFSGETSLSHMLSVATQAADILQ---PQLEEFGGPKPVVVPVGPDQDPHLRLT 221
Query: 256 RDVAPKL 262
R +A K+
Sbjct: 222 RGLAGKM 228
>sp|Q2NHE1|SYY_METST Tyrosine--tRNA ligase OS=Methanosphaera stadtmanae (strain DSM
3091) GN=tyrS PE=3 SV=1
Length = 318
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 96/221 (43%), Gaps = 27/221 (12%)
Query: 96 YTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYEN 155
Y G PS +HLGH + K LQD + I + + L +E ++A N
Sbjct: 35 YVGFEPSG-KVHLGHALTIKKMKTLQDA-GFKITIFIANLHAYLNNKGTLDELNEVAKYN 92
Query: 156 AKAIIACGFKQDSTFIFSDIDFMNPSFYLNILKIQKLVNGTTVK------AIFGLKDFDS 209
K A G +D+ FI D M P + + K KL TT++ A+ +
Sbjct: 93 IKCFKALGLSEDTNFILGS-DRMTPEYITEVFKAAKL---TTIQRAQRSMALVSRNETHD 148
Query: 210 VGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCA-IDQDPYFRLTRDVAPKLGYVKPA 268
V + +P +QA H + I ++Q L R++ P+LGY P
Sbjct: 149 VAQTLYPIMQALDI------------HDLDADIAVGGMEQRKIHMLAREILPRLGYRPPV 196
Query: 269 LIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNK 309
IH G++ KMS+S N I + DTPK++KNK+NK
Sbjct: 197 CIHIPLIHGTDGSD-KMSSSKGN-FIAIDDTPKEIKNKINK 235
>sp|Q8DWP7|SYW_STRA5 Tryptophan--tRNA ligase OS=Streptococcus agalactiae serotype V
(strain ATCC BAA-611 / 2603 V/R) GN=trpS PE=3 SV=1
Length = 341
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 86/321 (26%), Positives = 133/321 (41%), Gaps = 45/321 (14%)
Query: 91 KPFFLYTGRGPSSDSMHLGHLIPFMFTK-WLQDVFDVPLVIQLTDDEKSLWKNIKPEEAK 149
KP L TG P+ +H+GH + + + LQ+ L + L D + P+
Sbjct: 3 KPIIL-TGDRPTG-KLHIGHYVGSLKNRVLLQNEGSYTLFVFLADQQALTDHAKDPQTIV 60
Query: 150 KLAYENAKAIIACGF--KQDSTFIFSDIDFMN--PSFYLNILKIQKLVNGTTVKAIFGLK 205
+ A +A G + + FI S I + +Y+N++ + +L TVK K
Sbjct: 61 ESIGNVALDYLAVGLDPNKSTLFIQSQIPELAELSMYYMNLVSLARLERNPTVKTEIAQK 120
Query: 206 DFDS---VGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKL 262
F G +P QAA + F N L+P DQ P TR++
Sbjct: 121 GFGESIPAGFLVYPVAQAADITA------FKAN-----LVPVGTDQKPMIEQTREIVRSF 169
Query: 263 GY-------VKPALIH-----STFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKH 310
+ V+P I+ + P L G N KMS S LN+ IFL D VK KV
Sbjct: 170 NHAYNCQVLVEPEGIYPENDAAGRLPGLDG-NAKMSKS-LNNGIFLADDMDTVKKKVMSM 227
Query: 311 AYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLE--QIRKNYTSGALLTGELKKI 368
VEE ++ GN + + YL F D+D+ E ++++Y G L + K+
Sbjct: 228 YTDPNHIKVEEPGQIEGN----MVFHYLDVFGRDEDQKEITAMKEHYQKGGLGDVKTKRY 283
Query: 369 LIDT----ITPIVTQHQEAMK 385
L+D ++PI + E K
Sbjct: 284 LLDILERELSPIRERRLEYAK 304
>sp|Q8E2J5|SYW_STRA3 Tryptophan--tRNA ligase OS=Streptococcus agalactiae serotype III
(strain NEM316) GN=trpS PE=3 SV=1
Length = 341
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 86/321 (26%), Positives = 133/321 (41%), Gaps = 45/321 (14%)
Query: 91 KPFFLYTGRGPSSDSMHLGHLIPFMFTK-WLQDVFDVPLVIQLTDDEKSLWKNIKPEEAK 149
KP L TG P+ +H+GH + + + LQ+ L + L D + P+
Sbjct: 3 KPIIL-TGDRPTG-KLHIGHYVGSLKNRVLLQNEGSYTLFVFLADQQALTDHAKDPQTIV 60
Query: 150 KLAYENAKAIIACGF--KQDSTFIFSDIDFMN--PSFYLNILKIQKLVNGTTVKAIFGLK 205
+ A +A G + + FI S I + +Y+N++ + +L TVK K
Sbjct: 61 ESIGNVALDYLAVGLDPNKSTLFIQSQIPELAELSMYYMNLVSLARLERNPTVKTEIAQK 120
Query: 206 DFDS---VGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKL 262
F G +P QAA + F N L+P DQ P TR++
Sbjct: 121 GFGESIPAGFLVYPVAQAADITA------FKAN-----LVPVGTDQKPMIEQTREIVRSF 169
Query: 263 GY-------VKPALIH-----STFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKH 310
+ V+P I+ + P L G N KMS S LN+ IFL D VK KV
Sbjct: 170 NHAYNCQVLVEPEGIYPENDAAGRLPGLDG-NAKMSKS-LNNGIFLADDMDTVKKKVMSM 227
Query: 311 AYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLE--QIRKNYTSGALLTGELKKI 368
VEE ++ GN + + YL F D+D+ E ++++Y G L + K+
Sbjct: 228 YTDPNHIKVEEPGQIEGN----MVFHYLDVFGRDEDQKEITAMKEHYQKGGLGDVKTKRY 283
Query: 369 LIDT----ITPIVTQHQEAMK 385
L+D ++PI + E K
Sbjct: 284 LLDILERELSPIRERRLEYAK 304
>sp|P0DG61|SYW_STRPQ Tryptophan--tRNA ligase OS=Streptococcus pyogenes serotype M3
(strain SSI-1) GN=trpS PE=3 SV=1
Length = 340
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 86/326 (26%), Positives = 145/326 (44%), Gaps = 47/326 (14%)
Query: 91 KPFFLYTGRGPSSDSMHLGHLIPFMFTK-WLQDVFDVPLVIQLTDDEKSLWKNIKPEEAK 149
KP L TG P+ +HLGH + + + +LQ+ + + L D +++L + K E
Sbjct: 3 KPIIL-TGDRPTG-KLHLGHYVGSLKNRVFLQNENKYKMFVFLAD-QQALTDHAKESELI 59
Query: 150 KLAYEN-AKAIIACGF--KQDSTFIFSDIDFMN--PSFYLNILKIQKLVNGTTVKAIFGL 204
+ + N A ++ G KQ + FI S I + +Y+N++ + +L TVK
Sbjct: 60 QESIGNVALDYLSVGLDPKQSTIFIQSQIPELAELSMYYMNLVSLARLERNPTVKTEIAQ 119
Query: 205 KDF-DSV--GKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPK 261
K F +S+ G +P QAA + F N L+P DQ P TR++
Sbjct: 120 KGFGESIPSGFLVYPVSQAADITA------FKAN-----LVPVGNDQKPMIEQTREIVRS 168
Query: 262 LGY-------VKPALIH-----STFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNK 309
+ V+P I+ + P L G N KMS S L + I+L+D V+ KV
Sbjct: 169 FNHTYHTDCLVEPEGIYPENEKAGRLPGLDG-NAKMSKS-LGNGIYLSDDADTVRKKVMS 226
Query: 310 HAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDK--LEQIRKNYTSGALLTGELKK 367
+E+ ++ GN + + YL F +D+ +E ++++Y G L + K+
Sbjct: 227 MYTDPNHIKIEDPGQIEGN----MVFHYLDIFARKEDQADIEAMKEHYQRGGLGDVKTKR 282
Query: 368 ILID----TITPIVTQHQEAMKGVTE 389
L+D + PI + E K + E
Sbjct: 283 YLLDILERELAPIRERRLEYAKDMGE 308
>sp|P67598|SYW_STRP8 Tryptophan--tRNA ligase OS=Streptococcus pyogenes serotype M18
(strain MGAS8232) GN=trpS PE=3 SV=1
Length = 340
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 86/326 (26%), Positives = 145/326 (44%), Gaps = 47/326 (14%)
Query: 91 KPFFLYTGRGPSSDSMHLGHLIPFMFTK-WLQDVFDVPLVIQLTDDEKSLWKNIKPEEAK 149
KP L TG P+ +HLGH + + + +LQ+ + + L D +++L + K E
Sbjct: 3 KPIIL-TGDRPTG-KLHLGHYVGSLKNRVFLQNENKYKMFVFLAD-QQALTDHAKESELI 59
Query: 150 KLAYEN-AKAIIACGF--KQDSTFIFSDIDFMN--PSFYLNILKIQKLVNGTTVKAIFGL 204
+ + N A ++ G KQ + FI S I + +Y+N++ + +L TVK
Sbjct: 60 QESIGNVALDYLSVGLDPKQSTIFIQSQIPELAELSMYYMNLVSLARLERNPTVKTEIAQ 119
Query: 205 KDF-DSV--GKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPK 261
K F +S+ G +P QAA + F N L+P DQ P TR++
Sbjct: 120 KGFGESIPSGFLVYPVSQAADITA------FKAN-----LVPVGNDQKPMIEQTREIVRS 168
Query: 262 LGY-------VKPALIH-----STFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNK 309
+ V+P I+ + P L G N KMS S L + I+L+D V+ KV
Sbjct: 169 FNHTYHTDCLVEPEGIYPENEKAGRLPGLDG-NAKMSKS-LGNGIYLSDDADTVRKKVMS 226
Query: 310 HAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDK--LEQIRKNYTSGALLTGELKK 367
+E+ ++ GN + + YL F +D+ +E ++++Y G L + K+
Sbjct: 227 MYTDPNHIKIEDPGQIEGN----MVFHYLDIFARKEDQADIEAMKEHYQRGGLGDVKTKR 282
Query: 368 ILID----TITPIVTQHQEAMKGVTE 389
L+D + PI + E K + E
Sbjct: 283 YLLDILERELAPIRERRLEYAKDMGE 308
>sp|Q5X9A2|SYW_STRP6 Tryptophan--tRNA ligase OS=Streptococcus pyogenes serotype M6
(strain ATCC BAA-946 / MGAS10394) GN=trpS PE=3 SV=2
Length = 340
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 86/326 (26%), Positives = 145/326 (44%), Gaps = 47/326 (14%)
Query: 91 KPFFLYTGRGPSSDSMHLGHLIPFMFTK-WLQDVFDVPLVIQLTDDEKSLWKNIKPEEAK 149
KP L TG P+ +HLGH + + + +LQ+ + + L D +++L + K E
Sbjct: 3 KPIIL-TGDRPTG-KLHLGHYVGSLKNRVFLQNENKYKMFVFLAD-QQALTDHAKESELI 59
Query: 150 KLAYEN-AKAIIACGF--KQDSTFIFSDIDFMN--PSFYLNILKIQKLVNGTTVKAIFGL 204
+ + N A ++ G KQ + FI S I + +Y+N++ + +L TVK
Sbjct: 60 QESIGNVALDYLSVGLDPKQSTIFIQSQIPELAELSMYYMNLVSLARLERNPTVKTEIAQ 119
Query: 205 KDF-DSV--GKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPK 261
K F +S+ G +P QAA + F N L+P DQ P TR++
Sbjct: 120 KGFGESIPSGFLVYPVSQAADITA------FKAN-----LVPVGNDQKPMIEQTREIVRS 168
Query: 262 LGY-------VKPALIH-----STFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNK 309
+ V+P I+ + P L G N KMS S L + I+L+D V+ KV
Sbjct: 169 FNHTYHTDCLVEPEGIYPENEKAGRLPGLDG-NAKMSKS-LGNGIYLSDDADTVRKKVMS 226
Query: 310 HAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDK--LEQIRKNYTSGALLTGELKK 367
+E+ ++ GN + + YL F +D+ +E ++++Y G L + K+
Sbjct: 227 MYTDPNHIKIEDPGQIEGN----MVFHYLDIFARKEDQADIEAMKEHYQRGGLGDVKTKR 282
Query: 368 ILID----TITPIVTQHQEAMKGVTE 389
L+D + PI + E K + E
Sbjct: 283 YLLDILERELAPIRERRLEYAKDMGE 308
>sp|P0DG60|SYW_STRP3 Tryptophan--tRNA ligase OS=Streptococcus pyogenes serotype M3
(strain ATCC BAA-595 / MGAS315) GN=trpS PE=3 SV=1
Length = 340
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 86/326 (26%), Positives = 145/326 (44%), Gaps = 47/326 (14%)
Query: 91 KPFFLYTGRGPSSDSMHLGHLIPFMFTK-WLQDVFDVPLVIQLTDDEKSLWKNIKPEEAK 149
KP L TG P+ +HLGH + + + +LQ+ + + L D +++L + K E
Sbjct: 3 KPIIL-TGDRPTG-KLHLGHYVGSLKNRVFLQNENKYKMFVFLAD-QQALTDHAKESELI 59
Query: 150 KLAYEN-AKAIIACGF--KQDSTFIFSDIDFMN--PSFYLNILKIQKLVNGTTVKAIFGL 204
+ + N A ++ G KQ + FI S I + +Y+N++ + +L TVK
Sbjct: 60 QESIGNVALDYLSVGLDPKQSTIFIQSQIPELAELSMYYMNLVSLARLERNPTVKTEIAQ 119
Query: 205 KDF-DSV--GKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPK 261
K F +S+ G +P QAA + F N L+P DQ P TR++
Sbjct: 120 KGFGESIPSGFLVYPVSQAADITA------FKAN-----LVPVGNDQKPMIEQTREIVRS 168
Query: 262 LGY-------VKPALIH-----STFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNK 309
+ V+P I+ + P L G N KMS S L + I+L+D V+ KV
Sbjct: 169 FNHTYHTDCLVEPEGIYPENEKAGRLPGLDG-NAKMSKS-LGNGIYLSDDADTVRKKVMS 226
Query: 310 HAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDK--LEQIRKNYTSGALLTGELKK 367
+E+ ++ GN + + YL F +D+ +E ++++Y G L + K+
Sbjct: 227 MYTDPNHIKIEDPGQIEGN----MVFHYLDIFARKEDQADIEAMKEHYQRGGLGDVKTKR 282
Query: 368 ILID----TITPIVTQHQEAMKGVTE 389
L+D + PI + E K + E
Sbjct: 283 YLLDILERELAPIRERRLEYAKDMGE 308
>sp|Q99XH4|SYW_STRP1 Tryptophan--tRNA ligase OS=Streptococcus pyogenes serotype M1
GN=trpS PE=3 SV=1
Length = 340
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 86/326 (26%), Positives = 145/326 (44%), Gaps = 47/326 (14%)
Query: 91 KPFFLYTGRGPSSDSMHLGHLIPFMFTK-WLQDVFDVPLVIQLTDDEKSLWKNIKPEEAK 149
KP L TG P+ +HLGH + + + +LQ+ + + L D +++L + K E
Sbjct: 3 KPIIL-TGDRPTG-KLHLGHYVGSLKNRVFLQNENKYKMFVFLAD-QQALTDHAKESELI 59
Query: 150 KLAYEN-AKAIIACGF--KQDSTFIFSDIDFMN--PSFYLNILKIQKLVNGTTVKAIFGL 204
+ + N A ++ G KQ + FI S I + +Y+N++ + +L TVK
Sbjct: 60 QESIGNVALDYLSVGLDPKQSTIFIQSQIPELAELSMYYMNLVSLARLERNPTVKTEIAQ 119
Query: 205 KDF-DSV--GKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPK 261
K F +S+ G +P QAA + F N L+P DQ P TR++
Sbjct: 120 KGFGESIPSGFLVYPVSQAADITA------FKAN-----LVPVGNDQKPMIEQTREIVRS 168
Query: 262 LGY-------VKPALIH-----STFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNK 309
+ V+P I+ + P L G N KMS S L + I+L+D V+ KV
Sbjct: 169 FNHTYHTDCLVEPEGIYPENEKAGRLPGLDG-NAKMSKS-LGNGIYLSDDADTVRKKVMS 226
Query: 310 HAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDK--LEQIRKNYTSGALLTGELKK 367
+E+ ++ GN + + YL F +D+ +E ++++Y G L + K+
Sbjct: 227 MYTDPNHIKIEDPGQIEGN----MVFHYLDIFARKEDQADIEAMKEHYQIGGLGDVKTKR 282
Query: 368 ILIDT----ITPIVTQHQEAMKGVTE 389
L+D + PI + E K + E
Sbjct: 283 YLLDILERELAPIRERRLEYAKDMGE 308
>sp|Q978Y8|SYW_THEVO Tryptophan--tRNA ligase OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=trpS
PE=3 SV=1
Length = 426
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 105/246 (42%), Gaps = 31/246 (12%)
Query: 21 VVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSHRDM 80
+++PW+ S DY++L K+FG S D + H L RR + R
Sbjct: 1 MINPWS----SSDFFDYERLKKEFGISDQSDNI-----------DHFLFRRKVILGQRGF 45
Query: 81 HSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLW 140
I + F + TG PS + MHLG+ + Q + + I + D E
Sbjct: 46 EYIKYAIDNKIKFNVMTGLMPSGE-MHLGNKSAIDQVIYFQKL-GGSVSIAVADLESYST 103
Query: 141 KNIKPEEAKKLAYEN-AKAIIACGFKQDSTFIFS---DIDFMNPSFYLNILKIQKLVNGT 196
+ I ++A+++A E IA G + + S D+ F+ S+ L N
Sbjct: 104 RGIPLDKAREIAIEKYILNYIAMGLQPCEIYFQSKNKDVQFL--SYILG-----NWTNMN 156
Query: 197 TVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTR 256
+KA++G D + + + P IQAA + N P ++P DQDP+ RL R
Sbjct: 157 ELKALYGFTDSNDILHINAPLIQAADVLHTQLN---NYGGPAPTVVPVGFDQDPHIRLMR 213
Query: 257 DVAPKL 262
D+A ++
Sbjct: 214 DLAKRM 219
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 68/133 (51%), Gaps = 4/133 (3%)
Query: 264 YVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQATVEEHR 323
++ P+ + L+G KMS+S +S I + D ++ K K+ + A +GG+ T EE R
Sbjct: 296 FIPPSATYQKLMKGLKGG--KMSSSVPDSLISMNDDVEEAKRKIMR-ALTGGRDTEEEQR 352
Query: 324 ELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQHQEA 383
+LGG + + + ++DD + ++ + SG + G K+ + D ++ + +E
Sbjct: 353 KLGGEPEKCPVFDLYNYEIDDDKYVNEVFEECKSGKRMCGYCKREIADKMSIFLKDIKEK 412
Query: 384 MKGVTEEVLAQYM 396
+ + E L+ Y+
Sbjct: 413 -REIAREKLSLYI 424
>sp|Q9RVD6|SYW2_DEIRA Tryptophan--tRNA ligase 2 OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=trpS2 PE=1 SV=1
Length = 351
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/310 (25%), Positives = 130/310 (41%), Gaps = 44/310 (14%)
Query: 95 LYTGRGPSSDSMHLGHLIPFMFTK-WLQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAY 153
+ TG P+ ++HLGHL + + LQD + L + L D + +PE+ ++
Sbjct: 25 VLTGDRPTG-ALHLGHLAGSLQNRVRLQD--EAELFVLLADVQALTDHFDRPEQVRENVL 81
Query: 154 ENAKAIIACGF--KQDSTFIFSDIDFMNP--SFYLNILKIQKLVNGTTVKAIFGLKDFDS 209
A +A G ++ + + S + + ++LN++ + L TVKA K +
Sbjct: 82 AVALDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGE 141
Query: 210 ---VGKFSFPAIQAA--PSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDV------ 258
G F +P QAA +F +T L+P DQ P TR++
Sbjct: 142 RVPAGFFVYPVSQAADIAAFGAT-------------LVPVGDDQLPMLEQTREIVRRFNA 188
Query: 259 --APKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQ 316
AP L + L P L G KMS S L +AI L D+ +V KV G
Sbjct: 189 LYAPVLAEPQAQLSRVPRLPGLDG-QAKMSKS-LGNAIALGDSADEVARKVMGMYTDPGH 246
Query: 317 ATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILID----T 372
+ + GN + +L F D +++ ++ Y +G L ++KK LID
Sbjct: 247 LRASDPGRVEGNP----VFTFLDAFDPDPARVQALKDQYRAGGLGDVKVKKHLIDVLNGV 302
Query: 373 ITPIVTQHQE 382
+ PI T+ E
Sbjct: 303 LAPIRTRRAE 312
>sp|Q46127|SYW_CLOLO Tryptophan--tRNA ligase OS=Clostridium longisporum GN=trpS PE=3
SV=1
Length = 341
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 82/321 (25%), Positives = 139/321 (43%), Gaps = 45/321 (14%)
Query: 94 FLYTGRGPSSDSMHLGHLIPFMFTK-WLQDVFDVPLVIQLTDDEKSLWKNIK-PEEAKKL 151
+ TG P+ +H+GH + + + LQ+ D I + D +++L N + PE+ +
Sbjct: 5 IILTGDRPTG-KLHIGHYVGSLKNRVQLQNSGDYRSFIMIAD-QQALTDNARNPEKIRNS 62
Query: 152 AYENAKAIIACGFK--QDSTFIFSDIDFMNP--SFYLNILKIQKLVNGTTVKAIFGLKDF 207
E A +A G + + + S I +N YLN++ + +L TVKA K+F
Sbjct: 63 LIEVALDYLAVGIDPLKSTILVQSQIPELNELTMHYLNLVTLSRLERNPTVKAEIKQKNF 122
Query: 208 DS---VGKFSFPAIQAA--PSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKL 262
++ G +P QAA +F +T +P DQ P R++
Sbjct: 123 ENSIPAGFLIYPVSQAADITAFKAT-------------TVPVGEDQLPMIEQAREIVRSF 169
Query: 263 G-------YVKP-ALIHSTFFPALQGAN--TKMSASDLNSAIFLTDTPKQVKNKVNKHAY 312
V+P A+I L G + KMS S + +AI+L D +K KV
Sbjct: 170 NTIYGKEVLVEPKAVIPKGTIGRLPGTDGKAKMSKS-IGNAIYLADEADVIKQKVMSMYT 228
Query: 313 SGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKK----I 368
V + ++ GN + YL F +D + LE+++ +Y+ G L ++KK I
Sbjct: 229 DPNHIKVTDPGQVEGNT----VFTYLDTFCKDTETLEEMKAHYSRGGLGDVKVKKFLNEI 284
Query: 369 LIDTITPIVTQHQEAMKGVTE 389
L + PI + +E K + E
Sbjct: 285 LQAELEPIRNRRKEFQKDIPE 305
>sp|Q8DRR1|SYW_STRMU Tryptophan--tRNA ligase OS=Streptococcus mutans serotype c (strain
ATCC 700610 / UA159) GN=trpS PE=3 SV=1
Length = 340
Score = 62.0 bits (149), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 86/328 (26%), Positives = 137/328 (41%), Gaps = 51/328 (15%)
Query: 91 KPFFLYTGRGPSSDSMHLGHLIPFMFTK-WLQDVFDVPLVIQLTDDEKSLWKNIKPEEAK 149
KP L TG P+ +HLGH + + + LQ+ + + L D +++L + K E
Sbjct: 3 KPIIL-TGDRPTG-KLHLGHYVGSLKNRVLLQNENKYEMFVFLAD-QQALTDHAKESEII 59
Query: 150 KLAYEN-AKAIIACGFKQDSTFIFSDIDFMNPS------FYLNILKIQKLVNGTTVKAIF 202
K + N A ++ G + IF I P +Y+N++ + +L TVK
Sbjct: 60 KDSIANVALDYLSVGLDPEKVTIF--IQSQIPELAELTMYYMNLVSLARLERNPTVKTEI 117
Query: 203 GLKDFDS---VGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVA 259
K F G +P QAA + F N+ +P DQ P TR++
Sbjct: 118 AQKGFGESIPTGFLVYPISQAADITA------FKANY-----VPVGNDQKPMIEQTREIV 166
Query: 260 PKLGY-------VKPALIH-----STFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKV 307
+ V+P I+ + P L G N KMS S L + IFL+D V+ KV
Sbjct: 167 RSFNHTYKTNCLVEPEGIYPKNEAAGRLPGLDG-NAKMSKS-LGNGIFLSDDADTVRKKV 224
Query: 308 NKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFF--LEDDDKLEQIRKNYTSGALLTGEL 365
VE+ ++ GN + + YL F ED + ++++Y SG L +
Sbjct: 225 MSMYTDPNHIRVEDPGQIEGN----MVFHYLDIFGRKEDQTDIAAMKEHYQSGGLGDVKT 280
Query: 366 KKILIDT----ITPIVTQHQEAMKGVTE 389
K L+D +TPI + E K + +
Sbjct: 281 KHYLLDILERELTPIRRRRLEYEKNMDQ 308
>sp|O29482|SYY_ARCFU Tyrosine--tRNA ligase OS=Archaeoglobus fulgidus (strain ATCC 49558
/ VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=tyrS
PE=1 SV=1
Length = 323
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 126/291 (43%), Gaps = 45/291 (15%)
Query: 96 YTGRGPSSDSMHLGHLIPFMFTKWLQDV-FDVPLVIQLTDDEKSLWKNIKPEEAKKLAYE 154
Y G PS + +HLGH++ LQ+ F++ ++ L D L + EE ++A
Sbjct: 36 YVGYEPSGE-IHLGHMMTVQKLMDLQEAGFEI--IVLLADIHAYLNEKGTFEEIAEVADY 92
Query: 155 NAKAIIACGFKQD-STFIFSDIDFMNPSFYLNILKIQKLVN----GTTVKAIFGLKDFDS 209
N K IA G + + F+ ++ + L++LK+ ++ ++ + K+
Sbjct: 93 NKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSRRKEDPM 152
Query: 210 VGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGYVKPAL 269
V + +P +QA + H L IDQ L R+ P+LGY P
Sbjct: 153 VSQMIYPLMQA-----------LDIAHLGVDLAVGGIDQRKIHMLARENLPRLGYSSPVC 201
Query: 270 IHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQATVEEHRELGGNC 329
+H+ L G KMS+S N I + D P++V+ K+ K G VEE N
Sbjct: 202 LHTPILVGLDG--QKMSSSKGNY-ISVRDPPEEVERKIRKAYCPAG--VVEE------NP 250
Query: 330 DVDIA-YQYLTFF----LEDDDK---------LEQIRKNYTSGALLTGELK 366
+DIA Y L F +E D K E++ +++ SG L +LK
Sbjct: 251 ILDIAKYHILPRFGKIVVERDAKFGGDVEYASFEELAEDFKSGQLHPLDLK 301
>sp|Q8TXZ2|SYY_METKA Tyrosine--tRNA ligase OS=Methanopyrus kandleri (strain AV19 / DSM
6324 / JCM 9639 / NBRC 100938) GN=tyrS PE=3 SV=1
Length = 324
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 113/261 (43%), Gaps = 25/261 (9%)
Query: 96 YTGRGPSSDSMHLGHLIPFMFTKWLQDV-FDVPLVIQLTDDEKSLWKNIKPEEAKKLAYE 154
Y G PS +HLGH + LQ+ F V +I L D L + EE ++LA
Sbjct: 36 YVGFEPSG-KVHLGHKLVIDKMIDLQEAGFHV--IILLADLHAYLNEKGTLEEVRELADY 92
Query: 155 NAKAIIACGFKQDSTFIFSDIDFMNPSFYLNILKIQKLVNGTTVKAIFGLKDFDSVGKFS 214
N + +A G + T +F Y L + ++ TT++ + D + +
Sbjct: 93 NRRCFLAMGLDPNKTEFVLGSEFQLDEDY--ALDVYRMARHTTMRR--ARRSMDMIARSE 148
Query: 215 FPAIQAAPSFSSTFPLI--FNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHS 272
+ P +PL+ + H L ++Q L RDV PKLGY P +H+
Sbjct: 149 ----ENPPVSQVVYPLMQALDIVHLNVDLAVGGLEQRKIHMLARDVLPKLGYDSPTCLHT 204
Query: 273 TFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQATVEEHRELGGNCDVD 332
L G + KMS+S N+ I + D P+ ++ K+ K AY RE GN ++
Sbjct: 205 PIIHGLDG-DEKMSSSK-NNFIAVDDEPEVIREKLRK-AYCPA-------REAEGNPILE 254
Query: 333 IAYQYLTFFLEDDDKLEQIRK 353
I Y+Y F D+ +E+ K
Sbjct: 255 I-YRYFIFREYDEVTIERPEK 274
>sp|Q9CJD1|SYW_LACLA Tryptophan--tRNA ligase OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=trpS PE=3 SV=1
Length = 341
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 128/305 (41%), Gaps = 41/305 (13%)
Query: 91 KPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKNIK-PEEAK 149
KP L TG P+ +H+GH + + + D + D+++L + K PE +
Sbjct: 3 KPTIL-TGDRPTG-KLHIGHYVGSLQNRVKMQNEDKYNMFVFLADQQALTDHAKEPELIR 60
Query: 150 KLAYENAKAIIACGF--KQDSTFIFSDIDFMN--PSFYLNILKIQKLVNGTTVKAIFGLK 205
+ + A +A G ++ + FI S I + +Y+N++ + +L TVK K
Sbjct: 61 QSVGDVALDYLAAGLDPEKSTIFIQSQIPELAELSMYYMNLVSLARLERNPTVKTEIAQK 120
Query: 206 DFDS---VGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKL 262
F G +P QAA + F H +P DQ P TR++
Sbjct: 121 AFGESIPAGFLVYPVSQAADITA------FKATH-----VPVGNDQKPMIEQTREIVRSF 169
Query: 263 G-------YVKPALIH-----STFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKH 310
V+P I+ + P L G N KMS S L + IFL D +K KV
Sbjct: 170 NNAYHTDVLVEPEGIYPENEAAGRLPGLDG-NAKMSKS-LGNGIFLADDMDTLKKKVMSM 227
Query: 311 AYSGGQATVEEHRELGGNCDVDIAYQYLTFF--LEDDDKLEQIRKNYTSGALLTGELKKI 368
VE+ ++ GN + + YL F ED +++ +++ Y +G L + K+
Sbjct: 228 YTDPDHIKVEDPGKIEGN----MVFHYLDVFGKAEDAEQISEMKAQYQAGGLGDVKTKRF 283
Query: 369 LIDTI 373
L+D +
Sbjct: 284 LLDVL 288
>sp|P67596|SYW_STRR6 Tryptophan--tRNA ligase OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=trpS PE=3 SV=1
Length = 341
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 131/308 (42%), Gaps = 47/308 (15%)
Query: 91 KPFFLYTGRGPSSDSMHLGHLIPFMFTKWL---QDVFDVPLVIQLTDDEKSLWKNIK-PE 146
KP L TG P+ +H+GH + + + L +D +D+ + + D+++L + K P+
Sbjct: 3 KPIIL-TGDRPTG-KLHIGHYVGSLKNRVLLQEEDKYDMFVFLA---DQQALTDHAKDPQ 57
Query: 147 EAKKLAYENAKAIIACGF--KQDSTFIFSDIDFMN--PSFYLNILKIQKLVNGTTVKAIF 202
+ A +A G + + FI S I + +Y+N++ + +L TVK
Sbjct: 58 TIVESIGNVALDYLAVGLDPNKSTIFIQSQIPELAELSMYYMNLVSLARLERNPTVKTEI 117
Query: 203 GLKDFDS---VGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVA 259
K F G +P QAA + F N+ +P DQ P TR++
Sbjct: 118 SQKGFGESIPTGFLVYPIAQAADITA------FKANY-----VPVGTDQKPMIEQTREIV 166
Query: 260 PKLG-------YVKPALIH-----STFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKV 307
V+P I+ + P L G N KMS S LN+ I+L D ++ KV
Sbjct: 167 RSFNNAYNCDVLVEPEGIYPENERAGRLPGLDG-NAKMSKS-LNNGIYLADDADTLRKKV 224
Query: 308 NKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFL--EDDDKLEQIRKNYTSGALLTGEL 365
VE+ ++ GN + + YL F ED ++ +++ Y G L +
Sbjct: 225 MSMYTDPDHIRVEDPGKIEGN----MVFHYLDVFGRPEDAQEIADMKERYQRGGLGDVKT 280
Query: 366 KKILIDTI 373
K+ L++ +
Sbjct: 281 KRYLLEIL 288
>sp|P67595|SYW_STRPN Tryptophan--tRNA ligase OS=Streptococcus pneumoniae serotype 4
(strain ATCC BAA-334 / TIGR4) GN=trpS PE=3 SV=1
Length = 341
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 131/308 (42%), Gaps = 47/308 (15%)
Query: 91 KPFFLYTGRGPSSDSMHLGHLIPFMFTKWL---QDVFDVPLVIQLTDDEKSLWKNIK-PE 146
KP L TG P+ +H+GH + + + L +D +D+ + + D+++L + K P+
Sbjct: 3 KPIIL-TGDRPTG-KLHIGHYVGSLKNRVLLQEEDKYDMFVFLA---DQQALTDHAKDPQ 57
Query: 147 EAKKLAYENAKAIIACGF--KQDSTFIFSDIDFMN--PSFYLNILKIQKLVNGTTVKAIF 202
+ A +A G + + FI S I + +Y+N++ + +L TVK
Sbjct: 58 TIVESIGNVALDYLAVGLDPNKSTIFIQSQIPELAELSMYYMNLVSLARLERNPTVKTEI 117
Query: 203 GLKDFDS---VGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVA 259
K F G +P QAA + F N+ +P DQ P TR++
Sbjct: 118 SQKGFGESIPTGFLVYPIAQAADITA------FKANY-----VPVGTDQKPMIEQTREIV 166
Query: 260 PKLG-------YVKPALIH-----STFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKV 307
V+P I+ + P L G N KMS S LN+ I+L D ++ KV
Sbjct: 167 RSFNNAYNCDVLVEPEGIYPENERAGRLPGLDG-NAKMSKS-LNNGIYLADDADTLRKKV 224
Query: 308 NKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFL--EDDDKLEQIRKNYTSGALLTGEL 365
VE+ ++ GN + + YL F ED ++ +++ Y G L +
Sbjct: 225 MSMYTDPDHIRVEDPGKIEGN----MVFHYLDVFGRPEDAQEIADMKERYQRGGLGDVKT 280
Query: 366 KKILIDTI 373
K+ L++ +
Sbjct: 281 KRYLLEIL 288
>sp|A2SU89|SYY_METLZ Tyrosine--tRNA ligase OS=Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z) GN=tyrS PE=3 SV=1
Length = 317
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 99/223 (44%), Gaps = 29/223 (13%)
Query: 95 LYTGRGPSSDSMHLGHLIPFMFTKWLQDV----FDVPLVIQLTDDEKSLWKNIKPEEAKK 150
+YTG PS + +HLGHL+ L D+ FDV V+ + + L + E+ K+
Sbjct: 31 VYTGYEPSGE-IHLGHLVTI---NKLMDMKAAGFDV--VVLIANLHAYLNRKGTFEQIKE 84
Query: 151 LAYENAKAIIACGFKQDSTFIFSDIDFMNPSFYLNILKI--QKLVNGTT--VKAIFGLKD 206
LA N I A G K + +D+ + P + +L + Q +N T + + D
Sbjct: 85 LADYNKACIEAVGLKGAEFVLGTDVQ-LTPKYQTEVLTLCQQITLNRATRSMDEVGRAMD 143
Query: 207 FDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGYVK 266
V + +P +Q P + N + V IDQ L R+ P LGY
Sbjct: 144 NPMVSQMVYPVMQVV-----DIPTL-NVDAAV-----GGIDQRKIHMLAREHLPTLGYKP 192
Query: 267 PALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNK 309
P IH+ L G KMS+S N + + D+P+++K K+ K
Sbjct: 193 PVCIHTPIVNGLDG--EKMSSSKGN-VVSVADSPEEIKKKMKK 232
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,605,180
Number of Sequences: 539616
Number of extensions: 6730356
Number of successful extensions: 17289
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 144
Number of HSP's that attempted gapping in prelim test: 16776
Number of HSP's gapped (non-prelim): 452
length of query: 405
length of database: 191,569,459
effective HSP length: 120
effective length of query: 285
effective length of database: 126,815,539
effective search space: 36142428615
effective search space used: 36142428615
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)