Query psy13709
Match_columns 405
No_of_seqs 263 out of 1766
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 18:28:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13709.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13709hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2145|consensus 100.0 5E-125 1E-129 887.8 27.6 390 14-403 7-397 (397)
2 PLN02486 aminoacyl-tRNA ligase 100.0 8E-110 2E-114 837.6 36.0 383 20-402 1-383 (383)
3 PRK12285 tryptophanyl-tRNA syn 100.0 1.6E-94 3.5E-99 724.9 33.8 360 18-400 2-366 (368)
4 COG0180 TrpS Tryptophanyl-tRNA 100.0 3E-67 6.4E-72 512.2 25.8 283 90-391 3-301 (314)
5 PRK08560 tyrosyl-tRNA syntheta 100.0 5.1E-64 1.1E-68 499.5 27.0 297 66-388 5-324 (329)
6 TIGR00233 trpS tryptophanyl-tR 100.0 3.1E-63 6.8E-68 493.1 27.1 292 91-398 1-306 (328)
7 PRK00927 tryptophanyl-tRNA syn 100.0 9.4E-62 2E-66 483.8 24.6 275 94-389 3-297 (333)
8 cd00806 TrpRS_core catalytic c 100.0 4.6E-61 1E-65 468.5 24.3 264 94-376 1-280 (280)
9 PRK12282 tryptophanyl-tRNA syn 100.0 5.6E-61 1.2E-65 477.3 24.3 276 94-389 4-296 (333)
10 PRK12556 tryptophanyl-tRNA syn 100.0 3.1E-58 6.6E-63 457.3 25.5 273 93-389 4-298 (332)
11 PRK13354 tyrosyl-tRNA syntheta 100.0 1.1E-57 2.4E-62 464.7 30.2 291 65-388 6-317 (410)
12 PTZ00126 tyrosyl-tRNA syntheta 100.0 1.2E-57 2.5E-62 460.0 29.5 295 66-386 41-365 (383)
13 PRK05912 tyrosyl-tRNA syntheta 100.0 1.2E-56 2.7E-61 457.4 29.5 290 65-388 7-319 (408)
14 PRK12283 tryptophanyl-tRNA syn 100.0 2.6E-56 5.6E-61 447.6 26.2 276 93-389 3-363 (398)
15 PLN02886 aminoacyl-tRNA ligase 100.0 2.6E-55 5.7E-60 440.8 25.0 273 93-389 47-351 (389)
16 cd00805 TyrRS_core catalytic c 100.0 1.4E-55 3E-60 428.0 22.2 249 94-376 2-269 (269)
17 PF00579 tRNA-synt_1b: tRNA sy 100.0 2.3E-56 4.9E-61 438.1 16.2 273 89-378 2-292 (292)
18 PRK12284 tryptophanyl-tRNA syn 100.0 4.6E-54 9.9E-59 434.6 26.4 274 92-389 2-298 (431)
19 PTZ00348 tyrosyl-tRNA syntheta 100.0 1.2E-53 2.6E-58 454.1 30.3 307 66-387 7-340 (682)
20 cd00395 Tyr_Trp_RS_core cataly 100.0 1.1E-53 2.4E-58 415.2 23.1 251 94-376 1-273 (273)
21 TIGR00234 tyrS tyrosyl-tRNA sy 100.0 4.2E-48 9.1E-53 391.1 23.8 270 65-384 5-299 (377)
22 COG0162 TyrS Tyrosyl-tRNA synt 100.0 5.6E-46 1.2E-50 374.6 25.6 288 65-388 6-311 (401)
23 KOG2713|consensus 100.0 2.1E-45 4.6E-50 346.8 19.6 276 92-389 13-311 (347)
24 KOG2144|consensus 100.0 8.4E-43 1.8E-47 329.8 18.6 299 66-388 10-335 (360)
25 KOG2623|consensus 100.0 9.6E-41 2.1E-45 326.7 20.2 287 65-381 33-353 (467)
26 PTZ00348 tyrosyl-tRNA syntheta 100.0 1.8E-34 3.9E-39 307.6 25.2 239 119-385 401-661 (682)
27 cd00802 class_I_aaRS_core cata 99.4 4.1E-12 8.9E-17 111.9 11.8 65 215-289 78-143 (143)
28 cd00808 GluRS_core catalytic c 99.2 2.8E-10 6.2E-15 108.8 12.3 169 100-308 9-190 (239)
29 PRK00750 lysK lysyl-tRNA synth 98.9 8.2E-08 1.8E-12 101.5 20.0 56 240-298 236-293 (510)
30 cd00418 GlxRS_core catalytic c 98.7 1.3E-07 2.7E-12 90.1 12.1 152 100-293 9-162 (230)
31 cd00674 LysRS_core_class_I cat 98.6 6.8E-07 1.5E-11 90.3 13.8 56 240-298 229-288 (353)
32 TIGR00467 lysS_arch lysyl-tRNA 98.3 5.4E-06 1.2E-10 87.7 13.0 199 90-298 17-287 (515)
33 PRK14895 gltX glutamyl-tRNA sy 97.7 0.0048 1E-07 65.3 20.6 117 240-373 198-330 (513)
34 TIGR00464 gltX_bact glutamyl-t 97.7 0.0034 7.5E-08 66.1 19.4 66 240-309 199-270 (470)
35 cd09287 GluRS_non_core catalyt 97.5 0.0011 2.4E-08 63.6 11.7 162 97-290 6-172 (240)
36 PF01921 tRNA-synt_1f: tRNA sy 97.5 0.00019 4.1E-09 72.4 6.7 65 240-307 236-309 (360)
37 PRK01406 gltX glutamyl-tRNA sy 97.4 0.022 4.7E-07 60.1 21.1 65 240-308 209-279 (476)
38 PRK04156 gltX glutamyl-tRNA sy 97.3 0.0035 7.5E-08 67.1 14.1 78 92-178 101-179 (567)
39 cd00672 CysRS_core catalytic c 97.3 0.0034 7.4E-08 59.3 12.6 77 90-167 19-106 (213)
40 PRK05710 glutamyl-Q tRNA(Asp) 97.2 0.0068 1.5E-07 60.1 13.6 46 244-291 198-243 (299)
41 PRK01611 argS arginyl-tRNA syn 97.1 0.0015 3.3E-08 69.4 8.7 57 243-302 278-339 (507)
42 cd00807 GlnRS_core catalytic c 97.0 0.0065 1.4E-07 58.3 11.1 159 100-290 9-170 (238)
43 TIGR03838 queuosine_YadB gluta 97.0 0.0096 2.1E-07 58.3 12.3 49 241-291 188-236 (272)
44 PLN02627 glutamyl-tRNA synthet 97.0 0.069 1.5E-06 56.9 19.4 65 241-309 252-322 (535)
45 PRK00260 cysS cysteinyl-tRNA s 96.8 0.01 2.2E-07 62.4 11.2 76 91-167 22-110 (463)
46 COG1384 LysS Lysyl-tRNA synthe 96.8 0.02 4.4E-07 60.0 12.9 47 91-138 19-69 (521)
47 PRK12410 glutamylglutaminyl-tR 96.7 0.23 5E-06 51.8 19.8 130 241-388 193-342 (433)
48 PF00749 tRNA-synt_1c: tRNA sy 96.6 0.015 3.2E-07 58.2 10.2 52 240-293 201-252 (314)
49 PLN03233 putative glutamate-tR 96.6 0.023 4.9E-07 60.4 12.0 74 95-178 12-87 (523)
50 COG0215 CysS Cysteinyl-tRNA sy 96.6 0.09 1.9E-06 54.9 16.0 72 93-165 23-106 (464)
51 PTZ00402 glutamyl-tRNA synthet 96.5 0.041 8.8E-07 59.3 13.5 75 95-178 53-129 (601)
52 COG0008 GlnS Glutamyl- and glu 96.4 0.042 9.1E-07 57.8 12.5 49 240-290 208-256 (472)
53 TIGR00435 cysS cysteinyl-tRNA 96.1 0.042 9E-07 57.9 11.0 77 90-167 20-107 (465)
54 cd00671 ArgRS_core catalytic c 96.1 0.04 8.6E-07 51.8 9.6 46 243-290 164-212 (212)
55 PRK12558 glutamyl-tRNA synthet 95.9 0.091 2E-06 55.0 12.1 67 241-309 199-269 (445)
56 PLN02859 glutamine-tRNA ligase 95.7 0.21 4.6E-06 55.3 14.2 48 240-290 458-505 (788)
57 TIGR00463 gltX_arch glutamyl-t 95.5 0.16 3.4E-06 54.6 12.2 138 14-178 30-169 (560)
58 COG0162 TyrS Tyrosyl-tRNA synt 94.2 0.09 2E-06 54.2 6.1 101 283-386 232-356 (401)
59 cd00668 Ile_Leu_Val_MetRS_core 93.3 0.087 1.9E-06 52.3 4.0 56 240-298 228-286 (312)
60 PRK05347 glutaminyl-tRNA synth 93.2 0.59 1.3E-05 50.1 10.3 87 83-178 18-106 (554)
61 PRK14703 glutaminyl-tRNA synth 92.3 0.86 1.9E-05 50.9 10.3 87 83-178 20-108 (771)
62 cd00818 IleRS_core catalytic c 92.1 0.17 3.7E-06 51.0 4.2 55 240-298 254-312 (338)
63 PTZ00437 glutaminyl-tRNA synth 91.0 0.68 1.5E-05 49.8 7.6 74 95-178 52-127 (574)
64 TIGR00440 glnS glutaminyl-tRNA 90.2 1 2.2E-05 48.1 8.0 69 100-178 8-77 (522)
65 cd00817 ValRS_core catalytic c 89.7 0.29 6.3E-06 50.2 3.4 56 240-298 298-356 (382)
66 PRK00133 metG methionyl-tRNA s 89.6 1 2.2E-05 49.7 7.8 76 91-167 2-89 (673)
67 TIGR00456 argS arginyl-tRNA sy 89.4 0.3 6.5E-06 52.7 3.4 58 243-304 333-391 (566)
68 PLN02907 glutamate-tRNA ligase 89.2 1.1 2.4E-05 49.8 7.7 74 95-178 214-289 (722)
69 cd00812 LeuRS_core catalytic c 88.8 0.25 5.4E-06 49.2 2.1 54 241-298 227-288 (314)
70 KOG1147|consensus 88.4 2.2 4.7E-05 45.4 8.6 68 95-170 201-270 (712)
71 PRK12300 leuS leucyl-tRNA synt 88.0 3.9 8.5E-05 46.7 11.2 54 240-298 532-590 (897)
72 TIGR00392 ileS isoleucyl-tRNA 87.6 0.5 1.1E-05 53.5 3.8 56 240-298 566-624 (861)
73 COG0060 IleS Isoleucyl-tRNA sy 87.4 0.79 1.7E-05 52.0 5.1 60 240-306 557-619 (933)
74 KOG0432|consensus 87.1 0.89 1.9E-05 50.7 5.1 47 244-294 552-602 (995)
75 PRK13804 ileS isoleucyl-tRNA s 87.0 0.62 1.3E-05 53.5 4.1 54 239-297 584-642 (961)
76 PRK05743 ileS isoleucyl-tRNA s 86.8 0.64 1.4E-05 53.1 4.1 53 240-296 547-603 (912)
77 PRK12268 methionyl-tRNA synthe 86.8 1.4 3E-05 47.4 6.4 73 95-167 6-91 (556)
78 PRK11893 methionyl-tRNA synthe 86.4 0.44 9.6E-06 50.4 2.4 53 240-298 256-312 (511)
79 PF09334 tRNA-synt_1g: tRNA sy 85.9 1.9 4.1E-05 44.5 6.6 50 243-298 287-340 (391)
80 cd02156 nt_trans nucleotidyl t 85.8 2.4 5.1E-05 35.0 6.0 57 104-165 9-65 (105)
81 PLN02381 valyl-tRNA synthetase 85.7 0.8 1.7E-05 53.1 4.2 53 240-296 610-666 (1066)
82 TIGR00396 leuS_bact leucyl-tRN 85.6 5 0.00011 45.5 10.3 94 65-166 11-115 (842)
83 PLN02224 methionine-tRNA ligas 85.4 1.8 3.9E-05 47.3 6.5 93 71-167 52-156 (616)
84 cd00814 MetRS_core catalytic c 84.8 0.77 1.7E-05 45.8 3.1 56 239-298 235-293 (319)
85 PRK00390 leuS leucyl-tRNA synt 84.3 6 0.00013 44.7 10.2 92 66-167 16-119 (805)
86 PRK13208 valS valyl-tRNA synth 84.0 1.1 2.3E-05 50.5 4.1 55 240-298 488-546 (800)
87 PRK06039 ileS isoleucyl-tRNA s 84.0 1 2.2E-05 51.8 4.0 55 240-298 547-605 (975)
88 PF00133 tRNA-synt_1: tRNA syn 83.9 0.75 1.6E-05 50.0 2.8 54 240-296 516-572 (601)
89 COG0143 MetG Methionyl-tRNA sy 83.6 4.3 9.3E-05 43.8 8.3 75 91-165 5-90 (558)
90 PLN02286 arginine-tRNA ligase 83.4 3 6.5E-05 45.2 7.1 60 243-305 333-398 (576)
91 PRK12267 methionyl-tRNA synthe 83.4 4.1 8.8E-05 44.8 8.2 54 241-298 257-312 (648)
92 PRK11893 methionyl-tRNA synthe 82.6 3.9 8.4E-05 43.3 7.5 65 103-167 13-88 (511)
93 PRK00133 metG methionyl-tRNA s 81.5 4.5 9.8E-05 44.7 7.7 49 244-298 290-342 (673)
94 TIGR00422 valS valyl-tRNA synt 80.6 1.6 3.4E-05 49.6 3.8 55 240-298 480-538 (861)
95 PLN02843 isoleucyl-tRNA synthe 80.3 1.7 3.8E-05 50.0 4.1 54 239-296 565-622 (974)
96 PLN02959 aminoacyl-tRNA ligase 79.8 1.7 3.7E-05 50.6 3.8 54 240-298 673-731 (1084)
97 PRK12451 arginyl-tRNA syntheta 79.0 2 4.4E-05 46.4 3.9 56 243-302 330-388 (562)
98 PRK05729 valS valyl-tRNA synth 78.6 1.5 3.1E-05 50.0 2.8 55 240-298 475-533 (874)
99 TIGR00395 leuS_arch leucyl-tRN 78.0 1.9 4.1E-05 49.5 3.4 65 240-309 575-649 (938)
100 PRK14900 valS valyl-tRNA synth 77.8 1.8 3.8E-05 50.3 3.2 55 240-298 493-551 (1052)
101 PRK14536 cysS cysteinyl-tRNA s 77.3 11 0.00023 40.2 8.6 76 91-167 22-119 (490)
102 PLN02943 aminoacyl-tRNA ligase 77.3 2 4.4E-05 49.3 3.5 65 240-308 538-611 (958)
103 KOG0437|consensus 77.2 7.3 0.00016 43.2 7.3 98 283-386 709-808 (1080)
104 TIGR00398 metG methionyl-tRNA 76.8 2.3 5E-05 45.4 3.5 54 241-298 285-340 (530)
105 PLN02563 aminoacyl-tRNA ligase 76.6 1.4 2.9E-05 50.7 1.8 14 284-298 723-736 (963)
106 COG0018 ArgS Arginyl-tRNA synt 75.9 3.6 7.8E-05 44.6 4.7 63 243-306 340-404 (577)
107 PF01406 tRNA-synt_1e: tRNA sy 75.6 24 0.00051 35.2 9.9 76 90-167 6-94 (300)
108 PRK12268 methionyl-tRNA synthe 75.6 2.3 5E-05 45.7 3.1 52 243-298 292-347 (556)
109 PF09334 tRNA-synt_1g: tRNA sy 75.5 1 2.2E-05 46.5 0.3 35 101-136 10-48 (391)
110 cd00814 MetRS_core catalytic c 75.5 9.9 0.00021 37.8 7.4 64 104-167 13-87 (319)
111 TIGR00398 metG methionyl-tRNA 75.4 10 0.00022 40.4 8.0 66 101-167 10-86 (530)
112 PTZ00427 isoleucine-tRNA ligas 75.0 3.4 7.3E-05 48.6 4.5 51 239-294 674-729 (1205)
113 PTZ00399 cysteinyl-tRNA-synthe 74.8 16 0.00035 40.3 9.4 77 90-167 58-148 (651)
114 PRK12418 cysteinyl-tRNA synthe 74.5 2.6 5.7E-05 43.4 3.1 74 90-164 7-92 (384)
115 PRK12267 methionyl-tRNA synthe 74.4 11 0.00023 41.5 8.0 77 91-167 4-91 (648)
116 PLN02882 aminoacyl-tRNA ligase 74.4 3.3 7.1E-05 48.6 4.2 53 239-295 568-624 (1159)
117 cd00818 IleRS_core catalytic c 74.2 9 0.0002 38.6 6.8 40 92-131 2-44 (338)
118 cd00817 ValRS_core catalytic c 74.1 8.5 0.00018 39.5 6.7 43 93-135 3-49 (382)
119 PLN02946 cysteine-tRNA ligase 74.0 16 0.00035 39.5 9.0 74 91-165 79-164 (557)
120 KOG2007|consensus 72.9 14 0.0003 39.3 7.8 45 90-135 53-104 (586)
121 PLN02610 probable methionyl-tR 72.8 13 0.00028 42.1 8.2 76 92-167 18-105 (801)
122 cd00668 Ile_Leu_Val_MetRS_core 72.4 8.1 0.00018 38.2 5.9 13 103-115 12-24 (312)
123 PTZ00419 valyl-tRNA synthetase 72.3 3.3 7.1E-05 47.9 3.5 52 240-295 540-595 (995)
124 COG0495 LeuS Leucyl-tRNA synth 72.2 25 0.00055 39.7 10.2 52 244-298 532-592 (814)
125 PLN02563 aminoacyl-tRNA ligase 71.2 19 0.00041 41.6 9.2 96 65-166 90-197 (963)
126 PRK14534 cysS cysteinyl-tRNA s 71.1 15 0.00033 39.0 7.8 75 92-167 21-117 (481)
127 cd00812 LeuRS_core catalytic c 70.3 9.9 0.00021 37.8 6.0 74 94-167 3-87 (314)
128 TIGR00396 leuS_bact leucyl-tRN 70.2 1.9 4.2E-05 48.8 1.0 14 284-298 604-617 (842)
129 PLN02224 methionine-tRNA ligas 70.0 4 8.7E-05 44.7 3.4 51 244-298 327-379 (616)
130 TIGR03447 mycothiol_MshC cyste 69.5 3.9 8.4E-05 42.5 3.0 70 95-165 40-120 (411)
131 PF00750 tRNA-synt_1d: tRNA sy 66.0 3.7 8E-05 41.7 2.0 63 243-307 244-310 (354)
132 TIGR00422 valS valyl-tRNA synt 65.6 29 0.00063 39.5 9.2 61 65-133 15-78 (861)
133 PRK12418 cysteinyl-tRNA synthe 65.4 25 0.00054 36.3 7.9 24 271-297 250-273 (384)
134 PF01406 tRNA-synt_1e: tRNA sy 65.4 2.4 5.2E-05 42.2 0.5 51 244-298 212-265 (300)
135 COG0143 MetG Methionyl-tRNA sy 65.4 11 0.00024 40.7 5.5 44 263-309 314-362 (558)
136 KOG0433|consensus 65.2 7.1 0.00015 43.2 3.9 63 237-306 565-630 (937)
137 PF06543 Lac_bphage_repr: Lact 63.2 7.2 0.00016 28.0 2.4 31 34-65 17-47 (49)
138 PF00133 tRNA-synt_1: tRNA syn 63.2 20 0.00044 39.0 7.2 45 89-133 21-68 (601)
139 PRK14535 cysS cysteinyl-tRNA s 61.2 30 0.00065 38.4 7.8 77 90-167 246-334 (699)
140 PRK14535 cysS cysteinyl-tRNA s 59.6 5.1 0.00011 44.2 1.7 36 268-307 495-535 (699)
141 PLN02660 pantoate--beta-alanin 59.0 1.2E+02 0.0025 30.1 10.9 64 239-309 147-210 (284)
142 TIGR03447 mycothiol_MshC cyste 58.7 52 0.0011 34.3 8.8 25 270-297 276-300 (411)
143 cd00560 PanC Pantoate-beta-ala 58.6 39 0.00086 33.3 7.6 64 239-309 142-205 (277)
144 PRK00390 leuS leucyl-tRNA synt 58.5 5.5 0.00012 45.0 1.9 51 239-298 524-583 (805)
145 COG0414 PanC Panthothenate syn 58.0 93 0.002 30.7 9.8 87 244-374 148-234 (285)
146 PLN02610 probable methionyl-tR 56.7 8.6 0.00019 43.4 3.0 51 244-298 307-361 (801)
147 COG0495 LeuS Leucyl-tRNA synth 56.7 22 0.00048 40.2 6.1 96 63-167 13-121 (814)
148 PLN02946 cysteine-tRNA ligase 55.4 4.7 0.0001 43.5 0.6 26 269-298 311-336 (557)
149 PRK05729 valS valyl-tRNA synth 54.1 62 0.0013 37.0 9.3 60 65-133 19-81 (874)
150 PRK14536 cysS cysteinyl-tRNA s 48.4 12 0.00026 39.9 2.3 26 269-298 267-292 (490)
151 PRK05743 ileS isoleucyl-tRNA s 48.2 1.4E+02 0.003 34.5 10.9 62 66-133 30-94 (912)
152 PLN02381 valyl-tRNA synthetase 47.2 41 0.00088 39.4 6.5 61 65-133 110-173 (1066)
153 PTZ00419 valyl-tRNA synthetase 46.6 41 0.0009 39.0 6.5 65 65-133 38-105 (995)
154 PRK13208 valS valyl-tRNA synth 46.5 37 0.00081 38.3 6.0 60 65-133 20-83 (800)
155 cd02168 NMNAT_Nudix Nicotinami 45.9 88 0.0019 28.7 7.3 69 95-173 3-73 (181)
156 KOG1148|consensus 45.8 80 0.0017 34.5 7.8 111 81-205 235-357 (764)
157 KOG3042|consensus 44.6 2.9E+02 0.0063 26.5 10.8 20 96-115 25-44 (283)
158 PRK14534 cysS cysteinyl-tRNA s 39.4 17 0.00037 38.7 1.7 27 268-298 266-292 (481)
159 PTZ00399 cysteinyl-tRNA-synthe 38.7 11 0.00024 41.6 0.3 36 268-307 302-342 (651)
160 KOG0435|consensus 37.9 71 0.0015 35.4 6.1 60 65-133 39-102 (876)
161 COG0525 ValS Valyl-tRNA synthe 36.9 20 0.00043 40.8 1.8 51 241-295 481-535 (877)
162 KOG0434|consensus 36.6 23 0.0005 39.2 2.2 84 205-305 531-617 (1070)
163 TIGR00018 panC pantoate--beta- 36.2 3.2E+02 0.007 27.0 10.0 64 239-309 144-207 (282)
164 PLN02943 aminoacyl-tRNA ligase 36.1 60 0.0013 37.6 5.6 59 66-133 71-133 (958)
165 PLN02843 isoleucyl-tRNA synthe 33.8 98 0.0021 35.9 6.8 57 67-130 15-74 (974)
166 PRK14900 valS valyl-tRNA synth 33.4 37 0.00081 39.6 3.4 62 65-133 29-93 (1052)
167 PRK05379 bifunctional nicotina 33.3 1.8E+02 0.004 29.2 8.1 70 92-173 7-78 (340)
168 PF04255 DUF433: Protein of un 32.9 97 0.0021 22.6 4.5 49 311-370 6-54 (56)
169 TIGR03044 PS_II_psb27 photosys 31.5 62 0.0013 28.5 3.7 31 41-72 105-135 (135)
170 PRK06039 ileS isoleucyl-tRNA s 30.0 87 0.0019 36.3 5.6 63 65-133 21-86 (975)
171 PRK13477 bifunctional pantoate 29.3 3.8E+02 0.0082 28.9 9.9 64 239-309 142-205 (512)
172 COG3959 Transketolase, N-termi 28.8 1E+02 0.0022 29.6 4.9 65 90-159 104-173 (243)
173 cd02156 nt_trans nucleotidyl t 27.7 33 0.00073 28.0 1.3 43 243-289 61-105 (105)
174 TIGR00234 tyrS tyrosyl-tRNA sy 27.1 42 0.0009 34.5 2.2 44 252-296 195-243 (377)
175 PRK13793 nicotinamide-nucleoti 25.9 4.3E+02 0.0093 24.7 8.5 57 93-156 6-64 (196)
176 COG0525 ValS Valyl-tRNA synthe 25.1 56 0.0012 37.3 2.8 31 102-133 45-78 (877)
177 TIGR00392 ileS isoleucyl-tRNA 24.7 67 0.0014 36.6 3.5 62 66-133 17-81 (861)
178 TIGR00395 leuS_arch leucyl-tRN 23.7 92 0.002 36.0 4.3 56 66-130 9-67 (938)
179 TIGR00456 argS arginyl-tRNA sy 23.6 89 0.0019 33.8 4.0 41 95-136 117-162 (566)
180 PF03568 Peptidase_C50: Peptid 22.8 1.6E+02 0.0034 30.3 5.4 61 70-140 289-349 (383)
181 KOG1149|consensus 22.5 1.6E+02 0.0036 31.0 5.4 46 260-309 259-310 (524)
182 PF10752 DUF2533: Protein of u 22.0 1.3E+02 0.0028 24.2 3.6 52 346-397 30-82 (84)
183 PRK10594 murein L,D-transpepti 21.7 73 0.0016 34.9 2.8 54 293-359 498-553 (608)
184 PTZ00427 isoleucine-tRNA ligas 21.5 1.7E+02 0.0036 35.0 5.9 63 65-133 82-147 (1205)
185 COG5309 Exo-beta-1,3-glucanase 21.3 4.9E+02 0.011 25.9 8.0 115 45-167 57-173 (305)
186 COG2442 Uncharacterized conser 20.8 3E+02 0.0065 21.9 5.5 54 311-375 18-71 (79)
187 PF06825 HSBP1: Heat shock fac 20.3 1.5E+02 0.0033 21.9 3.4 28 368-395 3-30 (54)
188 PRK07217 replication factor A; 20.1 2.6E+02 0.0055 28.2 6.1 53 346-399 6-61 (311)
No 1
>KOG2145|consensus
Probab=100.00 E-value=4.6e-125 Score=887.81 Aligned_cols=390 Identities=69% Similarity=1.146 Sum_probs=383.6
Q ss_pred CCCCCCCccCCCcccCCCCCcccHHHHHHhhCCCCCCHHHHHHHHHHhhhhHHHHHHcCcccccCCHHHHHHHHhcCCCc
Q psy13709 14 TVDGEDDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSHRDMHSILNLYEQGKPF 93 (405)
Q Consensus 14 ~~~~~~~~v~pw~~~~~~~~~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~~~l~~RGl~~~~~d~~~ll~~~~~~~~~ 93 (405)
.++.+||+||||+|++++..+|||||||.+|||++|++++++|++++||+++|+++|||+||+|||++.||+++++|+||
T Consensus 7 ~~~~~Eq~vtPW~V~~~~~~~IDYdklI~~FG~~k~deeli~R~ek~tg~~~h~flRrg~fFshRDf~~iLd~~eq~kpF 86 (397)
T KOG2145|consen 7 ATEVEEQRVTPWDVETSSADGIDYDKLIVQFGCSKIDEELIDRFEKLTGKPPHHFLRRGIFFSHRDFNLILDAYEQGKPF 86 (397)
T ss_pred ccchhhcccCcceeecccCCCccHHHHHHHhCcccCCHHHHHHHHHhcCCCchHHhhhcceeecccHHHHHHHHHcCCce
Confidence 34677999999999988888999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEee
Q psy13709 94 FLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIFS 173 (405)
Q Consensus 94 ~iytG~~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~kt~i~~ 173 (405)
|+|||++||+++|||||++||+++||||+++++|++|+|+|+|++||+.++.|+..++++||+++|+||||||++|+||+
T Consensus 87 yLYTGRGpSS~smHlGHliPFiftKwlQe~F~vpLVIqlTDDEKflwK~l~~eda~~~arENaKDIia~GFDp~kTfIFs 166 (397)
T KOG2145|consen 87 YLYTGRGPSSESMHLGHLIPFIFTKWLQDVFDVPLVIQLTDDEKFLWKDLTLEDAKKYARENAKDIIAVGFDPKKTFIFS 166 (397)
T ss_pred EEEeCCCCCccccccccchhHHHHHHHHHHhCCceEEEecccHHHHHhhCcHHHHHHHHHhcccceEEeccCCcceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccC-hHHHHHHHHHHhhhCHHHHHHHhCCCCCCccccchhhhhhhcCCCcCchhhhhccCCCCCceeeecCCchHHH
Q psy13709 174 DIDFMN-PSFYLNILKIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYF 252 (405)
Q Consensus 174 ns~~~~-~~~~~~v~~l~~~~t~~~~~~~~g~~~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~lvp~G~DQd~~~ 252 (405)
|.+|++ ..||.++++|++.+|+|+++++|||+++.++|++.||..|||++|++|||++++.+.+++|||||++||||||
T Consensus 167 n~~y~g~~~fy~nivki~k~vt~nqa~~iFGF~~sd~igk~~Fpa~qaap~fssSFp~if~~~~~~~CLiPcAiDQDPyF 246 (397)
T KOG2145|consen 167 NLDYMGGPAFYENIVKISKCVTLNQAKAIFGFTDSDCIGKIGFPAIQAAPSFSSSFPFIFGGRDDIPCLIPCAIDQDPYF 246 (397)
T ss_pred chhhccCcHHHHHHHHHhheechhhheeeeccCCccccccccCchhhhcccccccchhhcCCCcCCceeceeeccCChHH
Confidence 999994 6999999999999999999999999999999999999999999999999999998888999999999999999
Q ss_pred HHHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCCCCceeccCCHHHHHHHhhcccccCCccchhhhhhcCCCCchH
Q psy13709 253 RLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQATVEEHRELGGNCDVD 332 (405)
Q Consensus 253 ~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~~~~t~e~~~~~ggn~~v~ 332 (405)
||+||+|+|+|++||+++|+.|+|.|+|+++|||+|+|||+|||+|++++|++||++||||||++|+|+||++||||+||
T Consensus 247 RmtRDvA~rlg~~Kpali~stffpaLqG~~~KMSASdpns~Ifltdt~~qIk~KI~~~afSGGr~tiEeHRe~GGn~dVD 326 (397)
T KOG2145|consen 247 RMTRDVAPRLGYPKPALIHSTFFPALQGAQTKMSASDPNSAIFLTDTAKQIKNKINKYAFSGGRDTIEEHRELGGNPDVD 326 (397)
T ss_pred HhhhhhhhhhCCCCcceeehhhchhhhCcccccccCCCCceEEecCcHHHHHHHHHHhhccCCcchHHHHHHhCCCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHhhhccccccCC
Q psy13709 333 IAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQHQEAMKGVTEEVLAQYMTPRKLKF 403 (405)
Q Consensus 333 ~~~~~l~~f~~~d~e~eei~~~~~~G~l~~~elK~~La~~i~~~l~~~qe~r~~~~~~~~~~~~~~~~~~~ 403 (405)
+.|+||+||++||+++|+++.+|.+|+|++||+|+.|++.|++++..||++|++++||.|+.||.+|+|+|
T Consensus 327 V~~~YLsFFldDD~kLeq~r~~Y~~G~mltgEmKk~~ievLq~~V~~hQa~Rk~Vtde~ld~Fm~~r~l~~ 397 (397)
T KOG2145|consen 327 VSFQYLSFFLDDDDKLEQIRKDYTSGEMLTGEMKKLCIEVLQEFVSRHQAARKEVTDETLDAFMDPRKLSF 397 (397)
T ss_pred ehHHHHHHHhccHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987
No 2
>PLN02486 aminoacyl-tRNA ligase
Probab=100.00 E-value=7.5e-110 Score=837.59 Aligned_cols=383 Identities=62% Similarity=1.056 Sum_probs=369.7
Q ss_pred CccCCCcccCCCCCcccHHHHHHhhCCCCCCHHHHHHHHHHhhhhHHHHHHcCcccccCCHHHHHHHHhcCCCceeeeec
Q psy13709 20 DVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGR 99 (405)
Q Consensus 20 ~~v~pw~~~~~~~~~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~ 99 (405)
|.||||+|++.+.+.|||+||+++|||++||+++++||+++||+++|+|+|||+||+|||++.+++++++|+|+++||||
T Consensus 1 ~~v~pw~v~~~~~~~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~h~~lrRgi~~~hrd~~~~l~~~e~~~~~~vYtG~ 80 (383)
T PLN02486 1 QVVTPWEVSAKDGGKIDYDKLVDKFGCQRLDPSLIDRVERLTGRPAHPFLRRGVFFAHRDLEEILDAYEKGEKFYLYTGR 80 (383)
T ss_pred CccCCccccCCCCCCcCHHHHHHHhCCCcCCHHHHHHHHHhcCCCCCcccccceeeeccCHHHHHHHHhcCCCeEEEeCC
Confidence 56999999976667899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEeeCccccC
Q psy13709 100 GPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMN 179 (405)
Q Consensus 100 ~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~kt~i~~ns~~~~ 179 (405)
+|||++|||||++|+++++|||+++|++++|+|||+++++++++|+|++++++++|+++|+||||||++++||+|++|..
T Consensus 81 ~PSg~~lHlGHlv~~~~~~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA~G~dp~kt~I~s~~~~~~ 160 (383)
T PLN02486 81 GPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVERTFIFSDFDYVG 160 (383)
T ss_pred CCCCccccHHHHHHHHHHHHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCcceEEEeccHHHh
Confidence 99988899999999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred hHHHHHHHHHHhhhCHHHHHHHhCCCCCCccccchhhhhhhcCCCcCchhhhhccCCCCCceeeecCCchHHHHHHHHHh
Q psy13709 180 PSFYLNILKIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVA 259 (405)
Q Consensus 180 ~~~~~~v~~l~~~~t~~~~~~~~g~~~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~lvp~G~DQd~~~~l~rdla 259 (405)
..+|.++++|++++|++++++++||.++.++|+++||+|||||+|+++||++++...+++|+||||+||+||+++|||+|
T Consensus 161 ~~~~~~~~~l~r~~t~~~~~~~~gf~~~~~ig~~~YP~lQaadi~~~~~~~l~~~~~~~~~lVPvG~DQd~~~~ltRdia 240 (383)
T PLN02486 161 GAFYKNMVKIAKCVTLNQVRGIFGFSGEDNIGKISFPAVQAAPSFPSSFPHLFGGKDKLRCLIPCAIDQDPYFRMTRDVA 240 (383)
T ss_pred HhHHHHHHHHHhhCcHHHHHHhhCcCCCCCchhhhhHHHHHhhhhhhccHHHhCCCcCCcceeecccchHHHHHHHHHHH
Confidence 46999999999999999999999999899999999999999999999999999876568899999999999999999999
Q ss_pred hhhCCCCceeeecccccCCCCCCccCCCCCCCCceeccCCHHHHHHHhhcccccCCccchhhhhhcCCCCchHHHHHHHH
Q psy13709 260 PKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLT 339 (405)
Q Consensus 260 ~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~~~~t~e~~~~~ggn~~v~~~~~~l~ 339 (405)
+|+|+.+|++++++++|+|+|+++|||||.+||+|||+|+|++|++||++||||||++|+++|++.||||++|++|+||+
T Consensus 241 ~r~~~~kp~~~~~~~lp~L~g~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~~~~t~~~~~~~gg~p~v~~~~~~l~ 320 (383)
T PLN02486 241 PRLGYYKPALIESRFFPALQGESGKMSASDPNSAIYVTDTPKEIKNKINKYAFSGGQDTVEEHRELGANLEVDIPWKYLN 320 (383)
T ss_pred HHhCCCCcceeccccccCCCCCCCcCcCcCCCCeeeccCCHHHHHHHHhcCCCCCCCCcccccccCCCCCccchHHHHHH
Confidence 99999999999999999999987899999999999999999999999999999999999999999999999999999999
Q ss_pred hccCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHhhhccccccC
Q psy13709 340 FFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQHQEAMKGVTEEVLAQYMTPRKLK 402 (405)
Q Consensus 340 ~f~~~d~e~eei~~~~~~G~l~~~elK~~La~~i~~~l~~~qe~r~~~~~~~~~~~~~~~~~~ 402 (405)
+|+++++++++|+++|++|+++|++||+.||+.|+++|+++|+||++++++.|++||++|+|.
T Consensus 321 ~f~~dd~~~eei~~~y~~G~l~~ge~K~~lae~i~~~l~~~qerr~~~~~~~~~~~~~~~~~~ 383 (383)
T PLN02486 321 FFLEDDAELERIKKEYGSGRMLTGEVKKRLIEVLTEIVERHQRARAAVTDEMVDAFMAVRPLP 383 (383)
T ss_pred HHcCCchHHHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCC
Confidence 998888899999999999999999999999999999999999999999999999999999973
No 3
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.6e-94 Score=724.87 Aligned_cols=360 Identities=41% Similarity=0.681 Sum_probs=340.9
Q ss_pred CCCccCCCcccCCCCCcccHHHHHHhhCCCCCCHHHHHHHHHHhhhhHHHHHHcCcccccCCHHHHHHHHhcCCCceeee
Q psy13709 18 EDDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYT 97 (405)
Q Consensus 18 ~~~~v~pw~~~~~~~~~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iyt 97 (405)
.++.||||+|+ + .+||+||+++|||+|||+++++ |++ +|+|+|||+||+|||++.+++++++|+|+++||
T Consensus 2 ~~~~v~pw~~~-~---~~dy~kl~~~fg~~~~~~~~~~-~~~-----~h~~~rR~~~~~hrd~d~il~~~~~~~~~~iyt 71 (368)
T PRK12285 2 DEFMVTPWEVS-G---IVDYDKLFEEFGIEPFTEVLPE-LPE-----PHPLMRRGIIFGHRDYDKILEAYRNGKPFAVYT 71 (368)
T ss_pred CCceeCCCcCc-C---cccHHHHHHHhCCCcCChHHHh-ccc-----cchHHhcCeeeecCCHHHHHHHHhcCCCeEEEE
Confidence 47899999997 3 3999999999999999999999 998 599999999999999999999999999999999
Q ss_pred ecCCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEeeCccc
Q psy13709 98 GRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDF 177 (405)
Q Consensus 98 G~~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~kt~i~~ns~~ 177 (405)
|++||| +|||||++++++++|||+ .|++++|+|||+|+++.+.++++++++++++++++++||||||++++||.||+|
T Consensus 72 G~~PSG-~lHLGh~~~~~~~~~lQ~-~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~~lA~G~Dp~k~~i~~qS~~ 149 (368)
T PRK12285 72 GFMPSG-PMHIGHKMVFDELKWHQE-FGANVYIPIADDEAYAARGLSWEETREWAYEYILDLIALGFDPDKTEIYFQSEN 149 (368)
T ss_pred ccCCCC-CccHHHHHHHHHHHHHHh-cCCCEEEEecchHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEECCch
Confidence 999996 899999999999999999 578999999999999987889999999999999999999999999999999999
Q ss_pred cChHHHHHHHHHHhhhCHHHHHHHhCCCCCCccccchhhhhhhcCCCcCchhhhhccCCCCCceeeecCCchHHHHHHHH
Q psy13709 178 MNPSFYLNILKIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRD 257 (405)
Q Consensus 178 ~~~~~~~~v~~l~~~~t~~~~~~~~g~~~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~lvp~G~DQd~~~~l~rd 257 (405)
. .++..++.+++.+|++++++++|+++++|+|+++||+|||||+| |+++... ..+|+||||+||+||+++|||
T Consensus 150 ~--~~~~l~~~l~~~~t~~~l~r~~~f~~~~~~g~~~YP~lQaADil---~~~~~~~--~~~~lvPvG~DQ~~h~~ltRd 222 (368)
T PRK12285 150 I--KVYDLAFELAKKVNFSELKAIYGFTGETNIGHIFYPATQAADIL---HPQLEEG--PKPTLVPVGIDQDPHIRLTRD 222 (368)
T ss_pred H--HHHHHHHHHHhhCcHHHHHHhhCCCCCCchhhhhhhHHHHHHHH---hhccccc--CCceEEEeccchHHHHHHHHH
Confidence 6 58999999999999999999999999999999999999999999 6777632 358999999999999999999
Q ss_pred Hhhhh----CCCCceeeecccccCCCCCCccCCCCCCCCceeccCCHHHHHHHhhcccccCCccchhhhhhcCCCCchHH
Q psy13709 258 VAPKL----GYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQATVEEHRELGGNCDVDI 333 (405)
Q Consensus 258 la~r~----~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~~~~t~e~~~~~ggn~~v~~ 333 (405)
+|+|+ |+++|++++++++|||+| +|||||.|+|+|||+|+|++|++||++ |||||+.|+++|++.||||++|+
T Consensus 223 iA~r~n~~~gf~~P~~l~~~~lpgL~G--~KMSkS~~~s~I~L~D~p~~I~kKI~k-A~Td~~~t~~~~~~~~g~p~~~~ 299 (368)
T PRK12285 223 IAERLHGGYGFIKPSSTYHKFMPGLTG--GKMSSSKPESAIYLTDDPETVKKKIMK-ALTGGRATLEEQRKLGGEPDECV 299 (368)
T ss_pred HHHHHhhhcCCCCchhHhhhcccCCCC--CcCCCCCCCCeeeccCCHHHHHHHHHh-CcCCCCcccccccccCCCCCcch
Confidence 99999 899999999999999999 799999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHhcc-CChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHhhhccccc
Q psy13709 334 AYQYLTFFL-EDDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQHQEAMKGVTEEVLAQYMTPRK 400 (405)
Q Consensus 334 ~~~~l~~f~-~~d~e~eei~~~~~~G~l~~~elK~~La~~i~~~l~~~qe~r~~~~~~~~~~~~~~~~ 400 (405)
+|+|+++|+ ++++++++|+++|++|+++||+||+.||+.|+++++++|+||+++++ .|++|+..-+
T Consensus 300 v~~~l~~~~~~~d~~~eei~~~y~~g~~~~g~~K~~lae~i~~~l~~~~er~~~~~~-~~~~~~~~~~ 366 (368)
T PRK12285 300 VYELLLYHLEEDDKELKEIYEECRSGELLCGECKKEAAEKIAEFLKEHQEKREEARE-ILEKYLYDGK 366 (368)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcccc
Confidence 999999997 57889999999999999999999999999999999999999999997 8999976544
No 4
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-67 Score=512.19 Aligned_cols=283 Identities=29% Similarity=0.407 Sum_probs=256.3
Q ss_pred CCCceeeeecCCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCccchhccCCCH-HHHHHHHHHHHHHHHHcCCCCCc
Q psy13709 90 GKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKNIKP-EEAKKLAYENAKAIIACGFKQDS 168 (405)
Q Consensus 90 ~~~~~iytG~~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~~lt~-e~i~~~~~~~~~~~~A~G~dp~k 168 (405)
+.++++|||++||| .||||||++++...|.|+.+...+++.|+|+|++..+..++ +.+++++++++++++||||||++
T Consensus 3 ~~~~~vlSG~~PSG-~lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k 81 (314)
T COG0180 3 MKKFRVLSGIQPSG-KLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEK 81 (314)
T ss_pred CCCceEEecCCCCC-CcchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCccc
Confidence 56889999999996 79999999999888866655467888899999988776544 88999999999999999999999
Q ss_pred eEEeeCccccChHHHHHHHHHHhhhCHHHHHHHhCCCCCCc-------cccchhhhhhhcCCCcCchhhhhccCCCCCce
Q psy13709 169 TFIFSDIDFMNPSFYLNILKIQKLVNGTTVKAIFGLKDFDS-------VGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCL 241 (405)
Q Consensus 169 t~i~~ns~~~~~~~~~~v~~l~~~~t~~~~~~~~g~~~~~s-------~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~l 241 (405)
++||.||+.. ......+.++..++++++++.++|++..+ +|.|.||++||||||. ++ .|+
T Consensus 82 ~~if~QS~v~--e~~eLa~~l~~~~~~gel~r~~~fKdk~~~~~~~~~~Gl~~YPvlqAADILl------~~-----a~~ 148 (314)
T COG0180 82 STIFLQSEVP--EHAELAWLLSCVTNFGELERMTQFKDKSAKKGESIPIGLLTYPVLQAADILL------YQ-----ATL 148 (314)
T ss_pred cEEEEccCch--HHHHHHHHHHccCcHHHHHhhcCcchhhhcccccccccchhccHHHHHHhhh------cc-----CCe
Confidence 9999999985 47777788899999999999888876555 9999999999999983 43 699
Q ss_pred eeecCCchHHHHHHHHHhhhhC------CCCceeeecc--cccCCCCCCccCCCCCCCCceeccCCHHHHHHHhhccccc
Q psy13709 242 IPCAIDQDPYFRLTRDVAPKLG------YVKPALIHST--FFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYS 313 (405)
Q Consensus 242 vp~G~DQd~~~~l~rdla~r~~------~~kp~~l~~~--~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t 313 (405)
||||.||+||+|+|||+|+||| +++|..+++. ++|||+|+ +|||||+|||+|+|+|+|++|++||++ |.|
T Consensus 149 VPVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P~~~~~~~~~i~gL~g~-~KMSkS~~ns~I~L~D~~~~i~kKI~~-~~t 226 (314)
T COG0180 149 VPVGEDQDQHLELTRDIARRFNHLYGEVFPLPEALISKVARLPGLDGP-GKMSKSDPNSAIFLLDDPKTIRKKIKK-AAT 226 (314)
T ss_pred eccCCCchHHHHHHHHHHHHHHhhcCCccCCccccccCCCcccCCCCC-CcccccCCCCeeeccCCHHHHHHHHHH-hcc
Confidence 9999999999999999999999 8999999988 99999998 999999999999999999999999999 888
Q ss_pred CCccchhhhhhcCCCCchHHHHHHHHhccCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhHHHH
Q psy13709 314 GGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQHQEAMKGVTEEV 391 (405)
Q Consensus 314 ~~~~t~e~~~~~ggn~~v~~~~~~l~~f~~~d~e~eei~~~~~~G~l~~~elK~~La~~i~~~l~~~qe~r~~~~~~~ 391 (405)
+| .+.+++++ ||+|++|++|+|+.+|+. +++.++|+++|++|.++||+||+.|++.|+++|+++|+||++++++.
T Consensus 227 d~-~~~~~~~~-~g~Pe~~~l~~~~~~~~~-~~~~~ei~~~~~~G~~~~ge~K~~lae~i~~fL~~iqer~~~~~~~~ 301 (314)
T COG0180 227 DG-PTLIEYRK-GGKPEVCNLFEIYSAFFE-DDSILEIEAEYRGGELGCGECKKELAEAIQEFLKPIQERREELREDP 301 (314)
T ss_pred CC-CCccccCC-CCCCCcchHHHHHHHhcC-CCcHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 88 78888888 999999999999999975 55667999999999999999999999999999999999999998754
No 5
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=5.1e-64 Score=499.50 Aligned_cols=297 Identities=27% Similarity=0.395 Sum_probs=266.3
Q ss_pred HHHHHcCcccccCCHHHHHHHHhcCCCceeeeecCCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCccchhccCCCH
Q psy13709 66 HHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKNIKP 145 (405)
Q Consensus 66 ~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~~lt~ 145 (405)
-.+++||..... ..++|.+++++++++++|+|++||| .|||||+++++.++|||++ |+.++|+|+|+|+++.++.++
T Consensus 5 ~~~~~~~~~e~~-~~~el~~~l~~~~~~~v~~G~~PTG-~lHLG~~~~~~~~~~lq~~-g~~~~i~IaD~ha~~~~~~~~ 81 (329)
T PRK08560 5 LELITRNTEEVV-TEEELRELLESKEEPKAYIGFEPSG-KIHLGHLLTMNKLADLQKA-GFKVTVLLADWHAYLNDKGDL 81 (329)
T ss_pred HHHHHhCceeec-CHHHHHHHHhCCCCCEEEEccCCCC-cchhhhhHHHHHHHHHHHC-CCeEEEEEccchhhcCCCCCH
Confidence 467788877755 4588888888899999999999996 7999999999999999996 678899999999999877899
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCceEEeeCcccc-ChHHHHHHHHHHhhhCHHHHHHH---hCCC-CCCccccchhhhhhh
Q psy13709 146 EEAKKLAYENAKAIIACGFKQDSTFIFSDIDFM-NPSFYLNILKIQKLVNGTTVKAI---FGLK-DFDSVGKFSFPAIQA 220 (405)
Q Consensus 146 e~i~~~~~~~~~~~~A~G~dp~kt~i~~ns~~~-~~~~~~~v~~l~~~~t~~~~~~~---~g~~-~~~s~g~~~YpllQa 220 (405)
+++++++++++++++|||+||+++.||.||+|. ...||..+++++++++++++.+. +++. ++.++|+|+||+|||
T Consensus 82 ~~i~~~~~~~~~~~~A~G~dp~k~~i~~qS~~~~~~~~~~~~~~l~~~~~~~~l~r~~~~~~~~~~~~~~g~l~YP~lqa 161 (329)
T PRK08560 82 EEIRKVAEYNKKVFEALGLDPDKTEFVLGSEFQLDKEYWLLVLKLAKNTTLARARRSMTIMGRRMEEPDVSKLVYPLMQV 161 (329)
T ss_pred HHHHHHHHHHHHHHHHcCCChhheEEEecchhhccchHHHHHHHHHhhccHHHHHHhhhhhcccCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999998 44688999999999999998773 4543 456999999999999
Q ss_pred cCCCcCchhhhhccCCCCCceeeecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCCCCceeccCCH
Q psy13709 221 APSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTP 300 (405)
Q Consensus 221 aD~~~~~f~~l~~~~~~~~~lvp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p 300 (405)
||++. ++ .++||+|.||+||+++|||+|+|+|+.+|.++++++||+|+|+++|||||+|+++|||+|+|
T Consensus 162 aDil~------~~-----ad~vpvG~DQ~~h~~l~Rdia~~~n~~~p~~l~~~~l~~L~g~~~KMSKS~p~~~I~L~D~~ 230 (329)
T PRK08560 162 ADIFY------LD-----VDIAVGGMDQRKIHMLAREVLPKLGYKKPVCIHTPLLTGLDGGGIKMSKSKPGSAIFVHDSP 230 (329)
T ss_pred HHHHH------hC-----CCEEEechhHHHHHHHHHHhhHhcCCCCceEEEcCccCCCCCCCCCCcCCCCCCeecccCCH
Confidence 99873 33 57999999999999999999999999999999999999999976799999988899999999
Q ss_pred HHHHHHhhcccccCCccchhhhhhcCCCCchHHHHHHHHhccCCh------------------hhHHHHHHHHhcCCCCH
Q psy13709 301 KQVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDD------------------DKLEQIRKNYTSGALLT 362 (405)
Q Consensus 301 ~~i~~KI~k~A~t~~~~t~e~~~~~ggn~~v~~~~~~l~~f~~~d------------------~e~eei~~~~~~G~l~~ 362 (405)
++|++||++ |||++ ++++.|++++|+++|+.++ +++++++++|++|+++|
T Consensus 231 ~~I~~KI~k-A~t~~-----------~~~~~n~v~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~eel~~~y~~g~l~~ 298 (329)
T PRK08560 231 EEIRRKIKK-AYCPP-----------GEVEGNPVLEIAKYHIFPRYDPFVIERPEKYGGDLEYESYEELERDYAEGKLHP 298 (329)
T ss_pred HHHHHHHHh-ccCCC-----------CCcCCCcHHHHHHHHhhccccceEEechhhcCCCCCcCCHHHHHHHHHcCCCCH
Confidence 999999999 99974 5567788999999986432 57899999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhH
Q psy13709 363 GELKKILIDTITPIVTQHQEAMKGVT 388 (405)
Q Consensus 363 ~elK~~La~~i~~~l~~~qe~r~~~~ 388 (405)
++||+.||+.|++++.|+|++|++-.
T Consensus 299 ~~lK~~la~~i~~~l~pir~~~~~~~ 324 (329)
T PRK08560 299 MDLKNAVAEYLIEILEPVREYLEEGP 324 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 99999999999999999999998654
No 6
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=100.00 E-value=3.1e-63 Score=493.07 Aligned_cols=292 Identities=42% Similarity=0.635 Sum_probs=262.0
Q ss_pred CCceeeeecCCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCccchhccCC-CHHHHHHHHHHHHHHHHHcCCCCCce
Q psy13709 91 KPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKNI-KPEEAKKLAYENAKAIIACGFKQDST 169 (405)
Q Consensus 91 ~~~~iytG~~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~~l-t~e~i~~~~~~~~~~~~A~G~dp~kt 169 (405)
+|+++|+|++||| .|||||++++++.+++|++ ++.++|+|+|+|+++.+.. ..+.++.++++++++++|||+||+++
T Consensus 1 ~~~~v~~G~~PTG-~~HlG~~l~~~~~~~~~q~-~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~ 78 (328)
T TIGR00233 1 KKFRVLTGIQPSG-KMHLGHYLGAIQTKWLQQF-GVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKKT 78 (328)
T ss_pred CCCEEEEeeCCCc-HhHHHHHHHHHHHHHHHhC-CCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhhe
Confidence 4789999999996 9999999999988888865 7889999999999986654 56888888888999999999999999
Q ss_pred EEeeCccccChHHHHHHHHHHhhhCHHHHHHHhCCCCC-----CccccchhhhhhhcCCCcCchhhhhccCCCCCceeee
Q psy13709 170 FIFSDIDFMNPSFYLNILKIQKLVNGTTVKAIFGLKDF-----DSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPC 244 (405)
Q Consensus 170 ~i~~ns~~~~~~~~~~v~~l~~~~t~~~~~~~~g~~~~-----~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~lvp~ 244 (405)
.||.||+|. .+++.++.+++.+|++++++..++.+. +++|+|+||+|||||+|. +. .++||+
T Consensus 79 ~if~qS~~~--e~~el~~~l~~~~t~~~l~r~~~~k~k~~~~~~~~g~l~YP~lqaaDil~------~~-----~d~vpv 145 (328)
T TIGR00233 79 FIFLQSDYP--EHYELAWLLSCQVTFGELKRMTQFKDKSQAENVPIGLFSYPVLQAADILL------YQ-----ADLVPV 145 (328)
T ss_pred EEEEcCCcH--HHHHHHHHHHccCCHHHHHhccCcchhccCCCCCchhhcchHHHHhhhhh------cC-----CCeeec
Confidence 999999996 788999999999999999887766544 599999999999999984 33 589999
Q ss_pred cCCchHHHHHHHHHhhhhC------CCCceeeecccccCCCCCC-ccCCCCCCCCceeccCCHHHHHHHhhcccccCCc-
Q psy13709 245 AIDQDPYFRLTRDVAPKLG------YVKPALIHSTFFPALQGAN-TKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQ- 316 (405)
Q Consensus 245 G~DQd~~~~l~rdla~r~~------~~kp~~l~~~~lp~L~G~~-~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~~~- 316 (405)
|.||+||+++|||+|+|+| +++|..++++++|.|.|.. +|||||++||+|||+|+|++|++||++ |+|+++
T Consensus 146 G~DQ~~h~elaRdia~r~n~~~~~~f~~P~~l~~~~~~~l~gl~~~KMSKS~~~s~I~L~D~~e~I~~KI~~-a~td~~~ 224 (328)
T TIGR00233 146 GIDQDQHLELTRDLAERFNKKFKNFFPKPESLISKFFPRLMGLSGKKMSKSDPNSAIFLTDTPKQIKKKIRK-AATDGGR 224 (328)
T ss_pred ccccHHHHHHHHHHHHHhhhhcCcccCCChhhhccccCCCCCCCCCcCCCCCCCCeEeecCCHHHHHHHHHh-cCCCCCC
Confidence 9999999999999999999 7899999877655555432 699999999999999999999999999 889876
Q ss_pred cchhhhhhcCCCCchHHHHHHHHhccCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHhhhc
Q psy13709 317 ATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQHQEAMKGVTEEVLAQYM 396 (405)
Q Consensus 317 ~t~e~~~~~ggn~~v~~~~~~l~~f~~~d~e~eei~~~~~~G~l~~~elK~~La~~i~~~l~~~qe~r~~~~~~~~~~~~ 396 (405)
.+.+++++.+|+|+++++|+|+.+++.+++++++++++|.+|+++|++||+.||+.|+++|+|+|+||++++++.|++++
T Consensus 225 ~~~~~~~~~~g~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~lK~~lae~i~~~l~pirer~~~~~~~~~~~~l 304 (328)
T TIGR00233 225 VTLFEHREKGGVPNLLVIYQYLSFFLIDDDKLKEIYEKYKSGKLLYGELKKALIEVLQEFLKEIQERRAEIAEEILDKIL 304 (328)
T ss_pred CcccCcCCCCCCchHHHHHHHhhccCCCcchHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888999999999999999998777899999999999999999999999999999999999999999998888886
Q ss_pred cc
Q psy13709 397 TP 398 (405)
Q Consensus 397 ~~ 398 (405)
..
T Consensus 305 ~~ 306 (328)
T TIGR00233 305 EP 306 (328)
T ss_pred HH
Confidence 54
No 7
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=9.4e-62 Score=483.83 Aligned_cols=275 Identities=24% Similarity=0.367 Sum_probs=240.2
Q ss_pred eeeeecCCCCCCcchhhhHHHHHHHH--HHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q psy13709 94 FLYTGRGPSSDSMHLGHLIPFMFTKW--LQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFI 171 (405)
Q Consensus 94 ~iytG~~PT~~slHlGhli~~~~~~~--lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~kt~i 171 (405)
++|+|++||| .|||||++|++ .+| ||++ +.+++.|+|+|+++.+ .+++++++++++++++++|||+||+++.|
T Consensus 3 ~v~~G~~PTG-~lHLG~~~g~~-~~~~~lQ~~--~~~~~~IaD~ha~t~~-~~~~~i~~~~~~~~~~~lA~GlDp~k~~i 77 (333)
T PRK00927 3 RVLSGIQPTG-KLHLGNYLGAI-KNWVELQDE--YECFFCIADLHALTVP-QDPEELRENTRELAADYLACGIDPEKSTI 77 (333)
T ss_pred EEEEeeCCCc-cchHHhHHHHH-HHHHHHHhc--CCeEEEEecHHHHhCC-CCHHHHHHHHHHHHHHHHeEccChhheEE
Confidence 6999999996 79999999875 566 9997 4567778999998855 58999999999999999999999999999
Q ss_pred eeCccccC---hHH----HHHHHHHHhhhCHHHHHHHhCCCCCCccccchhhhhhhcCCCcCchhhhhccCCCCCceeee
Q psy13709 172 FSDIDFMN---PSF----YLNILKIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPC 244 (405)
Q Consensus 172 ~~ns~~~~---~~~----~~~v~~l~~~~t~~~~~~~~g~~~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~lvp~ 244 (405)
|.||+|.. ..+ +..+.++.|+.++++...+ +.+++++|+|+||+|||||+|. ++ +|+||+
T Consensus 78 f~qS~~~~~~el~~~l~~~~~~~~l~r~~~~k~~~~~--~~~~~~~g~~~YP~lQaaDil~------~~-----~divpv 144 (333)
T PRK00927 78 FVQSHVPEHAELAWILNCITPLGELERMTQFKDKSAK--QKENVSAGLFTYPVLMAADILL------YK-----ADLVPV 144 (333)
T ss_pred EEeCCCchhHHHHHHHHhhhhHHHHHhhhhHHHHHhc--cCCCCCcHhhhcHHHHHHHHHh------cC-----CCEEee
Confidence 99999972 111 1234566677666655433 3578999999999999999973 32 799999
Q ss_pred cCCchHHHHHHHHHhhhhCC------CCceeeec---ccccCCCCCCccCCCCCCC--CceeccCCHHHHHHHhhccccc
Q psy13709 245 AIDQDPYFRLTRDVAPKLGY------VKPALIHS---TFFPALQGANTKMSASDLN--SAIFLTDTPKQVKNKVNKHAYS 313 (405)
Q Consensus 245 G~DQd~~~~l~rdla~r~~~------~kp~~l~~---~~lp~L~G~~~KMSkS~~n--saI~L~D~p~~i~~KI~k~A~t 313 (405)
|.||+||+++|||+|+|+|. ++|..+++ ++||||+|+++|||||.++ |+|||+|+|++|++||++ |+|
T Consensus 145 G~DQ~~h~elaRdia~~~n~~~~~~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D~~~~I~~KI~~-a~t 223 (333)
T PRK00927 145 GEDQKQHLELTRDIARRFNNLYGEVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLDDPKTIAKKIKK-AVT 223 (333)
T ss_pred ccchHHHHHHHHHHHHHhhhhccccCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeCCHHHHHHHHHh-CCC
Confidence 99999999999999999984 57776663 8899999987799999986 799999999999999999 999
Q ss_pred CCccchhhhhhcCCCCchHHHHHHHHhccCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhHH
Q psy13709 314 GGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQHQEAMKGVTE 389 (405)
Q Consensus 314 ~~~~t~e~~~~~ggn~~v~~~~~~l~~f~~~d~e~eei~~~~~~G~l~~~elK~~La~~i~~~l~~~qe~r~~~~~ 389 (405)
|++.+.+.++..|++|++|++++|+++|+ ++++++++++|.+|+++|++||+.||+.|++++.|+|++|++++.
T Consensus 224 d~~~~~~~~~~~~~~p~~~~l~~~~~~~~--~~~~eel~~~~~~g~~~~~~lK~~la~~i~~~l~pire~~~~~~~ 297 (333)
T PRK00927 224 DSERLREIRYDLPNKPEVSNLLTIYSALS--GESIEELEAEYEAGGKGYGDFKKDLAEAVVEFLAPIRERYEELLA 297 (333)
T ss_pred CCCcccccccCCCCCCccccHHHHHHHhC--CCCHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99988888889999999999999999995 678999999999999999999999999999999999999999975
No 8
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=100.00 E-value=4.6e-61 Score=468.52 Aligned_cols=264 Identities=39% Similarity=0.637 Sum_probs=241.6
Q ss_pred eeeeecCCCCCCcchhhhHH-HHHHHHHHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEe
Q psy13709 94 FLYTGRGPSSDSMHLGHLIP-FMFTKWLQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIF 172 (405)
Q Consensus 94 ~iytG~~PT~~slHlGhli~-~~~~~~lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~kt~i~ 172 (405)
++|||++||| +|||||+++ +...++||++ |+.++|+|+|+|+++.+.++++++++++++++++++|||+||+++.||
T Consensus 1 ~i~tG~~PTG-~lHLG~~~~al~~~~~lQ~a-g~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~i~ 78 (280)
T cd00806 1 RVLSGIQPSG-SLHLGHYLGAFRFWVWLQEA-GYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIF 78 (280)
T ss_pred CEEEeeCCCc-hhhHHHHHHHHHHHHHHHhC-CCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCEEE
Confidence 4899999997 999999999 7788999998 678999999999998777799999999999999999999999999999
Q ss_pred eCccccChHHHHHHHHHHhhhCHHHHHHHhCCCC------CCccccchhhhhhhcCCCcCchhhhhccCCCCCceeeecC
Q psy13709 173 SDIDFMNPSFYLNILKIQKLVNGTTVKAIFGLKD------FDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAI 246 (405)
Q Consensus 173 ~ns~~~~~~~~~~v~~l~~~~t~~~~~~~~g~~~------~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~lvp~G~ 246 (405)
.||+|. .++...+.+++.++++++++..++.+ ++++|+|+||+|||||++. +. .|+||+|.
T Consensus 79 ~qS~~~--~~~~l~~~l~~~~~~~~l~r~~~fk~~~~~~~~~~~g~~~YP~lqaaDil~------~~-----~~~vpvG~ 145 (280)
T cd00806 79 FQSDVP--EHYELAWLLSCVVTFGELERMTGFKDKSAQGESVNIGLLTYPVLQAADILL------YK-----ACLVPVGI 145 (280)
T ss_pred EcCCcH--HHHHHHHHHhCcCCHHHHHhccchhhhhccCCCCcchhhcchHHHHhhhhh------cc-----CCEEeecc
Confidence 999996 67888889999999999988777755 8999999999999999873 32 59999999
Q ss_pred CchHHHHHHHHHhhhhC------CCCceeeec--ccccCCCCCCccCCCCCCCCceeccCCHHHHHHHhhcccccCCccc
Q psy13709 247 DQDPYFRLTRDVAPKLG------YVKPALIHS--TFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQAT 318 (405)
Q Consensus 247 DQd~~~~l~rdla~r~~------~~kp~~l~~--~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~~~~t 318 (405)
||+||++++||+|+|+| +++|..+++ ++||+|+|+++|||||.++|+|||+|+|++|++||++ |+|++..+
T Consensus 146 DQ~~h~~l~Rdia~r~n~~~~~~~~~P~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d~~~~i~~KI~~-a~td~~~~ 224 (280)
T cd00806 146 DQDPHLELTRDIARRFNKLYGEIFPKPAALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTDSPKEIKKKIMK-AATDGGRT 224 (280)
T ss_pred ccHHHHHHHHHHHHHhccccccccCCCeeeccCCCccccCCCCCCcccCCCCCCeEEeeCCHHHHHHHHHh-ccCCCCCc
Confidence 99999999999999999 789999998 9999999977899999997799999999999999999 99998765
Q ss_pred hhhhhhcCCCCchHHHHHHHHhcc-CChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q psy13709 319 VEEHRELGGNCDVDIAYQYLTFFL-EDDDKLEQIRKNYTSGALLTGELKKILIDTITPI 376 (405)
Q Consensus 319 ~e~~~~~ggn~~v~~~~~~l~~f~-~~d~e~eei~~~~~~G~l~~~elK~~La~~i~~~ 376 (405)
++++.+++|++|++++||.+|+ .++++++++ ++|++|++++++||+.||++|+++
T Consensus 225 --~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~K~~lae~i~~~ 280 (280)
T cd00806 225 --EHRRDGGGPGVSNLVEIYSAFFNDDDEELEEI-DEYRSGGLGYGECKKLLAEAIQEF 280 (280)
T ss_pred --eecCCCCCCCcChHHHHHHHHhCCCHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHhC
Confidence 5678999999999999999885 466777777 899999999999999999999864
No 9
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=100.00 E-value=5.6e-61 Score=477.34 Aligned_cols=276 Identities=24% Similarity=0.395 Sum_probs=238.2
Q ss_pred eeeeecCCCCCCcchhhhHHHHHHH-HHHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEe
Q psy13709 94 FLYTGRGPSSDSMHLGHLIPFMFTK-WLQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIF 172 (405)
Q Consensus 94 ~iytG~~PT~~slHlGhli~~~~~~-~lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~kt~i~ 172 (405)
++|||++||| .|||||++++++.. +||++++ ++|+|+|+|+++.+..+++++++++++++++++|||+||++++||
T Consensus 4 ~v~sG~~PTG-~~HLGn~l~~~~~~~~lQ~~~~--~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~dp~k~~i~ 80 (333)
T PRK12282 4 IILTGDRPTG-KLHLGHYVGSLKNRVALQNEHE--QFVLIADQQALTDNAKNPEKIRRNILEVALDYLAVGIDPAKSTIF 80 (333)
T ss_pred EEEEeeCCCC-cchHHHHHHHHHHHHHHHhCCC--EEEEEccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcChhHeEEE
Confidence 6999999996 79999999977644 8999976 577899999988666799999999999999999999999999999
Q ss_pred eCccccC----hHHHHHHH---HHHhhhCHHHHHHHhCCCCCCccccchhhhhhhcCCCcCchhhhhccCCCCCceeeec
Q psy13709 173 SDIDFMN----PSFYLNIL---KIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCA 245 (405)
Q Consensus 173 ~ns~~~~----~~~~~~v~---~l~~~~t~~~~~~~~g~~~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~lvp~G 245 (405)
.||+|.. .++|..+. ++.|+.++++...++++.+++++|+++||+|||||+++ ++ +|+||||
T Consensus 81 ~qS~~~e~~~l~~~l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~~g~l~YP~lqaaDIl~------~~-----~d~vpvG 149 (333)
T PRK12282 81 IQSQIPELAELTMYYMNLVTVARLERNPTVKTEIAQKGFGRSIPAGFLTYPVSQAADITA------FK-----ATLVPVG 149 (333)
T ss_pred ECCcchHHHHHHHHHHhhchHHHHhhchHHHHHHhccCCCCCCcchhhcchHHHHHHHHh------hC-----CCEEEec
Confidence 9999952 24454443 55556666555555666788999999999999999873 43 6999999
Q ss_pred CCchHHHHHHHHHhhhhC--CCCceee-------ecccccCCCCCCccCCCCCCCCceeccCCHHHHHHHhhcccccCCc
Q psy13709 246 IDQDPYFRLTRDVAPKLG--YVKPALI-------HSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQ 316 (405)
Q Consensus 246 ~DQd~~~~l~rdla~r~~--~~kp~~l-------~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~~~ 316 (405)
.||+||++++||+|+|+| +.+|..+ .+++||+|+|+ +|||||++| +|||+|+|++|++||++ ||||+.
T Consensus 150 ~DQ~~h~~laRdiA~~~n~~~~~~~~~~p~~~~~~~~~i~~L~g~-~KMSKS~~~-~I~L~D~pe~I~kKI~~-A~td~~ 226 (333)
T PRK12282 150 DDQLPMIEQTREIVRRFNSLYGTDVLVEPEALLPEAGRLPGLDGK-AKMSKSLGN-AIYLSDDADTIKKKVMS-MYTDPN 226 (333)
T ss_pred cccHHHHHHHHHHHHHHhhhcCCccccCchhcccCCCcccCCCCC-CcCCCCCCC-eeeeeCCHHHHHHHHHh-CcCCCC
Confidence 999999999999999999 3334433 36899999985 799999976 99999999999999999 999874
Q ss_pred cchhhhhhcCCCCchHHHHHHHHhccCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhHH
Q psy13709 317 ATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQHQEAMKGVTE 389 (405)
Q Consensus 317 ~t~e~~~~~ggn~~v~~~~~~l~~f~~~d~e~eei~~~~~~G~l~~~elK~~La~~i~~~l~~~qe~r~~~~~ 389 (405)
. .+.+.+|+|++|++++|+++|..+++++++++++|.+|+++|++||+.||+.|+++|.|+|+||++++.
T Consensus 227 ~---~~~~~~~~~~~~~l~~~~~~f~~~~~~~e~l~~~y~~g~~~~~dlK~~lae~i~~~l~pirer~~~~~~ 296 (333)
T PRK12282 227 H---IRVEDPGKVEGNVVFTYLDAFDPDKAEVAELKAHYQRGGLGDVKCKRYLEEVLQELLAPIRERRAEFAK 296 (333)
T ss_pred C---ccCCCCCCCCcChHHHHHHHhCCCCchHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2 345679999999999999999766789999999999999999999999999999999999999998875
No 10
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.1e-58 Score=457.28 Aligned_cols=273 Identities=17% Similarity=0.256 Sum_probs=233.4
Q ss_pred ceeeeecCCCCCCcchhhhHHHHH-HHHHHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q psy13709 93 FFLYTGRGPSSDSMHLGHLIPFMF-TKWLQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFI 171 (405)
Q Consensus 93 ~~iytG~~PT~~slHlGhli~~~~-~~~lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~kt~i 171 (405)
.++|+|++||| .||||||++++. ..++|+.+++.+++.|+|+|+.. ..-+++++++++.+++++++|||+||+|++|
T Consensus 4 ~~v~sGiqPTG-~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHalt-~~~~~~~l~~~~~~~~~~~lA~GlDP~k~~i 81 (332)
T PRK12556 4 KIMLTGIKPTG-YPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALN-AVHDPEQFRSYTREVAATWLSLGLDPEDVIF 81 (332)
T ss_pred CEEEEEECCCC-cchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhcc-CCCCHHHHHHHHHHHHHHHhheeecccceEE
Confidence 37999999996 999999999865 34688877877888899999953 4468999999999999999999999999999
Q ss_pred eeCccccC---hHHH----HHHHHHHhhhCHHHHHHH-----hCCCCCCccccchhhhhhhcCCCcCchhhhhccCCCCC
Q psy13709 172 FSDIDFMN---PSFY----LNILKIQKLVNGTTVKAI-----FGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVP 239 (405)
Q Consensus 172 ~~ns~~~~---~~~~----~~v~~l~~~~t~~~~~~~-----~g~~~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~ 239 (405)
|.||++.. +.++ ..+++|.||.++++.... +|+++++++|+++||+|||||||. ++ +
T Consensus 82 f~qS~v~~~~eL~~il~~~t~~g~L~R~~~~K~k~~~~~~~~~~~~~~~~~gll~YPvLqAADIl~------~~-----~ 150 (332)
T PRK12556 82 YRQSDVPEIFELAWILSCLTPKGLMNRAHAYKAKVDQNKEAGLDLDAGVNMGLYTYPILMAADILL------FQ-----A 150 (332)
T ss_pred EECCCchHHHHHHHHHHccchHHHHHhccHHHHHHhhhhhhccccCCCCcchhhhchHHHhhhhhh------cc-----C
Confidence 99999751 1111 123567788777655332 245567899999999999999983 43 6
Q ss_pred ceeeecCCchHHHHHHHHHhhhhC------CCCceee---ecccccCCCCCCccCCCCCCCCceeccCCHHHHHHHhhcc
Q psy13709 240 CLIPCAIDQDPYFRLTRDVAPKLG------YVKPALI---HSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKH 310 (405)
Q Consensus 240 ~lvp~G~DQd~~~~l~rdla~r~~------~~kp~~l---~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~ 310 (405)
|+||||.||+||+++|||+|+||| +++|..+ +++++|||+| +|||||.+| +|+|+|+|++|++||++
T Consensus 151 d~VpvG~DQ~qhleLtRdiA~rfn~~yg~~f~~P~~~~~~~~~~l~gLdg--~KMSKS~~n-~I~L~D~p~~I~kKI~k- 226 (332)
T PRK12556 151 THVPVGKDQIQHIEIARDIATYFNHTFGDTFTLPEYVIQEEGAILPGLDG--RKMSKSYGN-VIPLFAEQEKLRKLIFK- 226 (332)
T ss_pred CEEEeccccHHHHHHHHHHHHHHHHhccccCCCceeccccccccccCCCC--CCCCCCCCC-cccccCCHHHHHHHHHH-
Confidence 999999999999999999999999 6778766 6899999999 799999976 89999999999999999
Q ss_pred cccCCccchhhhhhcCCCCchHHHHHHHHhccCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhHH
Q psy13709 311 AYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQHQEAMKGVTE 389 (405)
Q Consensus 311 A~t~~~~t~e~~~~~ggn~~v~~~~~~l~~f~~~d~e~eei~~~~~~G~l~~~elK~~La~~i~~~l~~~qe~r~~~~~ 389 (405)
|+||+... +.+++|++|++++|+++|+. ++++++++++|++ .++|++||+.||+.|+++|.|+|++|+++..
T Consensus 227 a~Td~~~~-----~~~~~p~~~~l~~i~~~~~~-~~~~eei~~~y~~-~~~~~~~K~~lae~i~~~l~pire~~~~~~~ 298 (332)
T PRK12556 227 IKTDSSLP-----NEPKDPETSALFTIYKEFAT-EEEVQSMREKYET-GIGWGDVKKELFRVVDRELAGPREKYAMYMN 298 (332)
T ss_pred hccCCCcc-----cCCCCcchhHHHHHHHHHCC-chhHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99998642 24799999999999999963 3679999999987 5999999999999999999999999999875
No 11
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.1e-57 Score=464.74 Aligned_cols=291 Identities=24% Similarity=0.299 Sum_probs=245.4
Q ss_pred HHHHHHcCcccccCCHHHHHHHHhcCCCceeeeecCCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCccchhcc---
Q psy13709 65 VHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWK--- 141 (405)
Q Consensus 65 ~~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~--- 141 (405)
...|.+||++++|++++++.+.+++++|+++|+||+|||++|||||++|+++++|||++|+.+ +++|||+++.+.+
T Consensus 6 ~~~l~~Rg~~~~~~~~~~l~~~~~~~~~~~iy~G~dPT~~sLHlGhlv~l~~l~~lq~~G~~~-~~ligd~ta~igDpsg 84 (410)
T PRK13354 6 LEQLKWRGAINQETDEEKLRKSLKEGKPLTLYLGFDPTAPSLHIGHLVPLMKLKRFQDAGHRP-VILIGGFTGKIGDPSG 84 (410)
T ss_pred HHHHHHcCCchhcCCHHHHHHHHhcCCCcEEEEcccCCCCCcchhhHHHHHHHHHHHHcCCeE-EEEEcccccccCCCCc
Confidence 346778999999999999999888899999999999999899999999999999999987664 5557888876653
Q ss_pred ------CCCHHHHHHHHHHHHHHHHHcCCCCCceEEeeCccccChHHHHHHH-HHHhhhCHHH------HHHHhCCCCCC
Q psy13709 142 ------NIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPSFYLNIL-KIQKLVNGTT------VKAIFGLKDFD 208 (405)
Q Consensus 142 ------~lt~e~i~~~~~~~~~~~~A~G~dp~kt~i~~ns~~~~~~~~~~v~-~l~~~~t~~~------~~~~~g~~~~~ 208 (405)
.++.+++++|+..+.+++.+ |+||+++.|++|++|+....|..++ .+++++|+++ ++.|++.++++
T Consensus 85 k~~~R~~l~~e~i~~n~~~i~~q~~~-~ld~~k~~i~~ns~w~~~~~~~~~l~~v~~~~tv~~m~~~~~~~~R~~~~~~i 163 (410)
T PRK13354 85 KSKERKLLTDEQVQHNAKTYTEQIFK-LFDFEKTEIVNNSDWLSKLNLIDFLRDYGKHFTVNRMLERDDVKSRLEREQGI 163 (410)
T ss_pred ccccccCCCHHHHHHHHHHHHHHHHH-hcCccceEEEECccccccccHHHHHHHHHhhccHHHHHhchHHHhhhccCCCC
Confidence 36889999999877777766 9999999999999998322233333 4555555554 55577656789
Q ss_pred ccccchhhhhhhcCCCcCchhhhhccCCCCCcee-eecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCccCCC
Q psy13709 209 SVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLI-PCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSA 287 (405)
Q Consensus 209 s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~lv-p~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSk 287 (405)
++++|+||+||||| |.++++ +++|.+ |+|+|||+|+++|||+|+|+|..+|..++.|+||+++| .||||
T Consensus 164 s~~ef~YpllQa~D-----~~~l~~---~~~~~iq~gG~DQ~~ni~~grdl~~r~~~~~~~~lt~PlL~g~dG--~KMsK 233 (410)
T PRK13354 164 SFTEFFYPLLQAYD-----FVHLNR---KEDVDLQIGGTDQWGNILMGRDLQRKLEGEEQFGLTMPLLEGADG--TKMGK 233 (410)
T ss_pred chhhhccHHHHhhh-----HHHHhc---cCCCCEEEecHHHHHHHHHHHHHHHHhCCCCceEeccCCccCCCC--CccCC
Confidence 99999999999999 555664 345655 69999999999999999999999999999999999998 69999
Q ss_pred CCCCCceeccCC---HHHHHHHhhcccccCCccchhhhhhcCCCCchHHHHHHHHhccC-ChhhHHHHHHHHhcCCCCHH
Q psy13709 288 SDLNSAIFLTDT---PKQVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLE-DDDKLEQIRKNYTSGALLTG 363 (405)
Q Consensus 288 S~~nsaI~L~D~---p~~i~~KI~k~A~t~~~~t~e~~~~~ggn~~v~~~~~~l~~f~~-~d~e~eei~~~~~~G~l~~~ 363 (405)
|.+| +|||+|+ |+++++||++ + +| +.+++||++|+. +++++++|+++|++|. +++
T Consensus 234 S~~n-aI~L~d~~tsp~~i~qki~~-~-----------------~D-~~v~~~l~~~t~l~~~ei~~l~~~~~~~~-~~~ 292 (410)
T PRK13354 234 SAGG-AIWLDPEKTSPYEFYQFWMN-I-----------------DD-RDVVKYLKLFTDLSPDEIDELEAQLETEP-NPR 292 (410)
T ss_pred CCCC-ceeccCCCCCHHHHHHHHHc-C-----------------Ch-HHHHHHHHHHhCCCHHHHHHHHHHHhcCC-ChH
Confidence 9876 9999999 9999999998 3 22 344899999975 7889999999999985 599
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhH
Q psy13709 364 ELKKILIDTITPIVTQHQEAMKGVT 388 (405)
Q Consensus 364 elK~~La~~i~~~l~~~qe~r~~~~ 388 (405)
++|+.||++|++++|+.++.++...
T Consensus 293 ~~Kk~LA~~v~~~vhg~~~~~~a~~ 317 (410)
T PRK13354 293 DAKKVLAEEITKFVHGEEAAEEAEK 317 (410)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 9999999999999999999877655
No 12
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.2e-57 Score=459.98 Aligned_cols=295 Identities=22% Similarity=0.283 Sum_probs=251.3
Q ss_pred HHHHHcCcccccCCHHHHHHHHhcCCCceeeeecCCCCCCcchhhh-HHHHHHHHHHhcCCccEEEEecCccchhccC--
Q psy13709 66 HHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHL-IPFMFTKWLQDVFDVPLVIQLTDDEKSLWKN-- 142 (405)
Q Consensus 66 ~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~PT~~slHlGhl-i~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~~-- 142 (405)
-.+++||..... ..++|.+++++++++++|+|++||| .|||||. +..+..++||++ |+.++++|||+|+++.+.
T Consensus 41 ~~~i~r~~~e~i-~~eel~~~l~~~~~~~v~~G~~PTG-~lHLG~g~i~~~~~~~lq~~-G~~v~~~IaD~hA~~~~~~g 117 (383)
T PTZ00126 41 VKLCLSIGEECI-QPEELRELLKLKERPICYDGFEPSG-RMHIAQGILKAINVNKLTKA-GCVFVFWVADWFALLNNKMG 117 (383)
T ss_pred HHHHhcCceeec-CHHHHHHHHhcCCCCEEEEEECCCC-cccccchHhHhHHHHHHHhC-CCeEEEEEccceeecCCCCC
Confidence 467788877655 5788888888889999999999997 8999994 444456779997 467888899999998764
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCceEEeeCcccc---ChHHHHHHHHHHhhhCHHHHHH---HhCCC--CCCccccch
Q psy13709 143 IKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFM---NPSFYLNILKIQKLVNGTTVKA---IFGLK--DFDSVGKFS 214 (405)
Q Consensus 143 lt~e~i~~~~~~~~~~~~A~G~dp~kt~i~~ns~~~---~~~~~~~v~~l~~~~t~~~~~~---~~g~~--~~~s~g~~~ 214 (405)
.+++++++++.++++.++|||+||+++.||.||+|+ ...||..+.++++++|++++++ .+++. ++.++|+|.
T Consensus 118 ~~l~~i~~~~~~~~~~~~A~GlDp~k~~i~~qS~~v~~~~~l~w~~~~~la~~~tl~r~~r~~~~~~r~~~~~~~~g~l~ 197 (383)
T PTZ00126 118 GDLEKIRKVGEYFIEVWKAAGMDMDNVRFLWASEEINKNPNDYWLRVMDIARSFNITRIKRCSQIMGRSEGDEQPCAQIL 197 (383)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCccceEEEECChhhhhhhHHHHHHHHHHhccCCHHHHHhhhhhhccccCCCCCchhhh
Confidence 578999999999999999999999999999999997 3468899999999999999864 44553 457899999
Q ss_pred hhhhhhcCCCcCchhhhhccCCCCCceeeecCCchHHHHHHHHHhhhhCC-CCceeeecccccCCCCCCccCCCCCCCCc
Q psy13709 215 FPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGY-VKPALIHSTFFPALQGANTKMSASDLNSA 293 (405)
Q Consensus 215 YpllQaaD~~~~~f~~l~~~~~~~~~lvp~G~DQd~~~~l~rdla~r~~~-~kp~~l~~~~lp~L~G~~~KMSkS~~nsa 293 (405)
||+|||||+++ ++ .+++|+|.||++|++++||+|+++|. ++|.++++++||||+++++|||||++|++
T Consensus 198 YP~LQaaDil~------l~-----adivpvG~DQ~~~~~LaRdia~~~~~~~~~~~~~~~~lpgL~dg~~KMSKS~~ns~ 266 (383)
T PTZ00126 198 YPCMQCADIFY------LK-----ADICQLGMDQRKVNMLAREYCDKKKIKKKPIILSHHMLPGLLEGQEKMSKSDPNSA 266 (383)
T ss_pred hhHHHhhhhhc------cC-----CCEEEeCccHHHHHHHHHHHHHHhCCCCCceeecccccccCCCCCCCCCcCCCCCe
Confidence 99999999984 33 57899999999999999999999995 68888899999999754589999999999
Q ss_pred eeccCCHHHHHHHhhcccccCCccchhhhhhcCCCCchHHHHHHHHhcc---------C---------ChhhHHHHHHHH
Q psy13709 294 IFLTDTPKQVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFL---------E---------DDDKLEQIRKNY 355 (405)
Q Consensus 294 I~L~D~p~~i~~KI~k~A~t~~~~t~e~~~~~ggn~~v~~~~~~l~~f~---------~---------~d~e~eei~~~~ 355 (405)
|||+|+|++|++||++ |||+++ +++.+++++|++++. . +.+++++++++|
T Consensus 267 I~L~Dspe~I~kKI~k-A~t~p~-----------~~~~npv~~~~~~~~~~~~~~~~I~r~~k~gg~~~~~~~eel~~~y 334 (383)
T PTZ00126 267 IFMEDSEEDVNRKIKK-AYCPPG-----------VIEGNPILAYFKSIVFPAFNSFTVLRKEKNGGDVTYTTYEELEKDY 334 (383)
T ss_pred ecCCCCHHHHHHHHHh-CcCCCC-----------CCCCCcchhhhhhcccccccceeEeccccccCccCcCCHHHHHHHH
Confidence 9999999999999999 999854 333345677777642 1 125799999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy13709 356 TSGALLTGELKKILIDTITPIVTQHQEAMKG 386 (405)
Q Consensus 356 ~~G~l~~~elK~~La~~i~~~l~~~qe~r~~ 386 (405)
++|.++|++||++||+.|+++|.|+|++++.
T Consensus 335 ~~g~l~p~dlK~~lae~i~~~L~PIRe~~~~ 365 (383)
T PTZ00126 335 LSGALHPGDLKPALAKYLNLMLQPVRDHFQN 365 (383)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999874
No 13
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.2e-56 Score=457.44 Aligned_cols=290 Identities=21% Similarity=0.294 Sum_probs=239.3
Q ss_pred HHHHHHcCcccccCCHHHHHHHHhcCCCceeeeecCCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCccchhcc---
Q psy13709 65 VHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWK--- 141 (405)
Q Consensus 65 ~~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~--- 141 (405)
...|.+||++++|+|++++++.++ ++++++|+||+|||++|||||++|++.++|||++|+.+ +++|||+|+.+.+
T Consensus 7 l~~l~~Rg~~~~~~~~~~l~~~l~-~~~~~vy~G~dPTg~slHlGhlv~l~~l~~lQ~~G~~~-~~ligd~ta~igDpsg 84 (408)
T PRK05912 7 LEELKERGLIEQITDEEELEEKLA-KEPLRIYLGFDPTAPSLHLGHLVPLLKLRRFQDAGHKP-IALIGGFTGMIGDPSG 84 (408)
T ss_pred HHHHHhCCCeeecCCHHHHHHHhh-CCCCEEEEeecCCCCCccHHhHHHHHHHHHHHHCCCcE-EEEEcCceeEcCCCCC
Confidence 456778999999999999999998 78999999999998889999999999999999987654 5557887777643
Q ss_pred ------CCCHHHHHHHHHHHHHHHHHcCCCCCc--eEEeeCccccChHHHHHHHH-HHhhhCHHHH------HHHhCCCC
Q psy13709 142 ------NIKPEEAKKLAYENAKAIIACGFKQDS--TFIFSDIDFMNPSFYLNILK-IQKLVNGTTV------KAIFGLKD 206 (405)
Q Consensus 142 ------~lt~e~i~~~~~~~~~~~~A~G~dp~k--t~i~~ns~~~~~~~~~~v~~-l~~~~t~~~~------~~~~g~~~ 206 (405)
.++.+++++|+.. +...+++|+||++ +.||+|++|+....+..+++ ++++++++++ +.|++.++
T Consensus 85 k~~~r~~l~~e~i~~n~~~-i~~ql~~~ld~~k~~~~i~~nsd~~~~~~~~~~l~~v~~~~~v~~m~~~~~~k~r~~~~~ 163 (408)
T PRK05912 85 KSETRKLLTREQVAENAET-IKEQLFKFLDFEKDGAEIVNNSDWLGKLNAIDFLRDLGKHFTVNRMLERDDFKKRLREGQ 163 (408)
T ss_pred CchhhccCCHHHHHHHHHH-HHHHHHHhcCcCcCcEEEEECCCcCCcccHHHHHHHHhhhccHHHHhhcchHHHHhccCC
Confidence 3588999999865 4666799999998 99999999983222333333 5555555554 56776567
Q ss_pred CCccccchhhhhhhcCCCcCchhhhhccCCCCCcee-eecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCccC
Q psy13709 207 FDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLI-PCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKM 285 (405)
Q Consensus 207 ~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~lv-p~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KM 285 (405)
++|+|+|+||+|||||+ .++++ +++|.+ |+|+|||+|+++|||+|+|+|..++..++.|+||+++| +||
T Consensus 164 ~is~~ef~Yp~LQa~D~-----l~l~~---~~~~~i~~gG~DQ~~ni~~grdla~r~~~~~~~~l~~plL~~~~G--~KM 233 (408)
T PRK05912 164 GISFTEFLYPLLQGYDF-----VALNK---RYGCDLQLGGSDQWGNILSGRDLQRRYGGKPQFGLTMPLLTGLDG--KKM 233 (408)
T ss_pred CCchhhhhhHHHHHhhH-----HHHhc---cCCCCEEeccHHHHHHHHHHHHHHHHhCCCCeEEEecCCcCCCCC--Ccc
Confidence 89999999999999994 45554 345655 57999999999999999999988888899999999998 899
Q ss_pred CCCCCCCceeccC---CHHHHHHHhhcccccCCccchhhhhhcCCCCchHHHHHHHHhccC-ChhhHHHHHHHHhcCCCC
Q psy13709 286 SASDLNSAIFLTD---TPKQVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLE-DDDKLEQIRKNYTSGALL 361 (405)
Q Consensus 286 SkS~~nsaI~L~D---~p~~i~~KI~k~A~t~~~~t~e~~~~~ggn~~v~~~~~~l~~f~~-~d~e~eei~~~~~~G~l~ 361 (405)
|||. +++|||+| +|+++++||++ + + ++++ ++||++|+. +++++++|.++|++|. +
T Consensus 234 sKS~-~naI~L~d~~tsp~~i~qki~~-~-~--------------D~~v---~~~l~~~t~~~~~ei~~l~~~~~~g~-~ 292 (408)
T PRK05912 234 GKSE-GNAVWLDEEKTSPYEMYQKWMN-I-S--------------DADV---WRYLKLLTFLSLEEIEELEEELAEGP-N 292 (408)
T ss_pred cCCC-CCceeCCCCCCCHHHHHHHHhc-C-C--------------hHHH---HHHHHHHhcCCHHHHHHHHHHHhcCC-C
Confidence 9998 45999999 99999999999 3 2 2333 566666653 7889999999999887 9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhH
Q psy13709 362 TGELKKILIDTITPIVTQHQEAMKGVT 388 (405)
Q Consensus 362 ~~elK~~La~~i~~~l~~~qe~r~~~~ 388 (405)
++++|+.||++|++++|+.++..+...
T Consensus 293 ~~~~Kk~LA~~v~~~lhg~~~~~~a~~ 319 (408)
T PRK05912 293 PREAKKVLAEEITALVHGEEAAEAAEE 319 (408)
T ss_pred hHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 999999999999999999888766443
No 14
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.6e-56 Score=447.60 Aligned_cols=276 Identities=20% Similarity=0.279 Sum_probs=233.1
Q ss_pred ceeeeecCCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEe
Q psy13709 93 FFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIF 172 (405)
Q Consensus 93 ~~iytG~~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~kt~i~ 172 (405)
-.+|+|++||| .||||||++++ .+|.+...+..+++.|+|+|+++.+..+++++++++.++++.++|||+||+++.||
T Consensus 3 ~~v~sGiqPSG-~~HLGnylG~i-k~wv~lq~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~if 80 (398)
T PRK12283 3 DRVLSGMRPTG-RLHLGHYHGVL-KNWVKLQHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQATLF 80 (398)
T ss_pred cEEEEEeCCCC-cchHHHHHHHH-HHHHHHhcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEE
Confidence 36999999995 99999999975 68854333456788899999998766799999999999999999999999999999
Q ss_pred eCccccC---hHH-HH---HHHHHHhhhCHHHHHHHhCCCCCCccccchhhhhhhcCCCcCchhhhhccCCCCCceeeec
Q psy13709 173 SDIDFMN---PSF-YL---NILKIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCA 245 (405)
Q Consensus 173 ~ns~~~~---~~~-~~---~v~~l~~~~t~~~~~~~~g~~~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~lvp~G 245 (405)
.||+... ..| +. .+.++.|++++++...+.+..++.++|.++||+|||||||. ++ +++||+|
T Consensus 81 ~QS~v~eh~eL~wil~~~t~~~~L~R~~~~Kdk~~~~~~~~~~~~Gll~YPvLqAADILl------~~-----a~iVPVG 149 (398)
T PRK12283 81 IQSKVPEHAELHLLLSMITPLGWLERVPTYKDQQEKLKEKDLSTYGFLGYPLLQSADILI------YR-----AGLVPVG 149 (398)
T ss_pred ECCCchHHHHHHHHHHhhccHHHHHhhhHHHHHHhhhccccCCcchhhcCcHHHHHHHHh------cC-----CCEeeec
Confidence 9998761 111 11 13567777777766554433567899999999999999973 33 7999999
Q ss_pred CCchHHHHHHHHHhhhhCC-------------------------------------------------------------
Q psy13709 246 IDQDPYFRLTRDVAPKLGY------------------------------------------------------------- 264 (405)
Q Consensus 246 ~DQd~~~~l~rdla~r~~~------------------------------------------------------------- 264 (405)
.||+||++++||+|+|||.
T Consensus 150 ~DQ~qHleLaRdIA~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (398)
T PRK12283 150 EDQVPHVEMTREIARRFNHLYGREPGFEEKAEAAIKKLGKKRAKLYHELRNAYQEEGDDEALEQARALLQEQQNLSMGDR 229 (398)
T ss_pred cccHHHHHHHHHHHHHHHHhcCccccchhHHHHHhhccchhhHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhh
Confidence 9999999999999999652
Q ss_pred ---------------CCcee--eecccccCCCCCCccCCCCCCCCceeccCCHHHHHHHhhcccccCCccchhhhhhcCC
Q psy13709 265 ---------------VKPAL--IHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQATVEEHRELGG 327 (405)
Q Consensus 265 ---------------~kp~~--l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~~~~t~e~~~~~gg 327 (405)
+.|.. .++++||+|+| +|||||.+| +|+|+|+|++|++||++ |+||+ .++++..||
T Consensus 230 ~~~~~~~~~~~~~~~~~P~~~~~~~~~I~gLdg--~KMSKS~~n-~I~L~Ds~~~I~kKI~~-a~TDs---~~~~~~~~g 302 (398)
T PRK12283 230 ERLFGYLEGAGKIILPEPQALLTEASKMPGLDG--QKMSKSYGN-TIGLREDPESVTKKIRT-MPTDP---ARVRRTDPG 302 (398)
T ss_pred ccccccccccCCcccCCCcccccCCCcccCCCC--CcCCCCCCC-eeeCcCCHHHHHHHHHh-CCCCC---cccccCCCC
Confidence 33433 23689999998 799999765 99999999999999999 99984 456888999
Q ss_pred CCchHHHHHHHHhccCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhHH
Q psy13709 328 NCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQHQEAMKGVTE 389 (405)
Q Consensus 328 n~~v~~~~~~l~~f~~~d~e~eei~~~~~~G~l~~~elK~~La~~i~~~l~~~qe~r~~~~~ 389 (405)
+|++|++++++++|+ ++++++++.++|++|+++||+||+.||+.|.++|+++|||++++.+
T Consensus 303 ~Pe~~nl~~i~~~~~-~~~~~~~i~~~~~~g~~~~g~~K~~lae~v~e~L~~irer~~~~~~ 363 (398)
T PRK12283 303 DPEKCPVWQLHQVYS-DEETKEWVQKGCRSAGIGCLECKQPVIDAILREQQPMRERAQKYED 363 (398)
T ss_pred CCCcCHHHHHHHHhC-CChHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999994 4557999999999999999999999999999999999999998875
No 15
>PLN02886 aminoacyl-tRNA ligase
Probab=100.00 E-value=2.6e-55 Score=440.76 Aligned_cols=273 Identities=20% Similarity=0.300 Sum_probs=232.6
Q ss_pred ceeeeecCCCCCCcchhhhHHHHHHHH--HHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q psy13709 93 FFLYTGRGPSSDSMHLGHLIPFMFTKW--LQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTF 170 (405)
Q Consensus 93 ~~iytG~~PT~~slHlGhli~~~~~~~--lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~kt~ 170 (405)
..+|+|++||| .||||||++.+ .+| ||+. +.+++.|+|+|++.. ..++++++++++++++.++|||+||+|+.
T Consensus 47 ~~v~sGiqPSG-~lHLGnylGai-~~~v~lQ~~--~~~~~~IADlHAlt~-~~~~~~lr~~~~~~~a~~lA~GlDP~ks~ 121 (389)
T PLN02886 47 KRVVSGVQPTG-SIHLGNYLGAI-KNWVALQET--YDTFFCVVDLHAITL-PHDPRELGKATRSTAAIYLACGIDPSKAS 121 (389)
T ss_pred CeEEEEECCCC-ccHHHHHHHHH-HHHHHHhcc--CCEEEEEecHHHhhC-CCCHHHHHHHHHHHHHHHHHcCcCccceE
Confidence 36999999995 99999999875 455 9984 456778999999875 45899999999999999999999999999
Q ss_pred EeeCccccC---hHHHHH----HHHHHhhhCHHHHHHHhCCCCCCccccchhhhhhhcCCCcCchhhhhccCCCCCceee
Q psy13709 171 IFSDIDFMN---PSFYLN----ILKIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIP 243 (405)
Q Consensus 171 i~~ns~~~~---~~~~~~----v~~l~~~~t~~~~~~~~g~~~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~lvp 243 (405)
||.||+... ..|+.. +.+|+|++++++..+..+ .+++++|.|+||+|||||||. ++ +++||
T Consensus 122 if~QS~v~e~~eL~wil~~~t~~g~L~R~~q~K~k~~~~~-~~~~~~gll~YPvLqAADILl------~~-----a~~VP 189 (389)
T PLN02886 122 VFVQSHVPAHAELMWLLSCSTPIGWLNKMIQFKEKSRKAG-DENVGVGLLTYPVLMASDILL------YQ-----ADLVP 189 (389)
T ss_pred EEEeCCCchhHHHHHHHHhhCcHHHHHhcchHHHHHHhcC-CCCCChHhhhChHHHHhhhhh------cC-----CCeEE
Confidence 999998752 222211 358899999998877665 467899999999999999983 43 68999
Q ss_pred ecCCchHHHHHHHHHhhhhCC------------------CCceeee---cccccCCCCCCccCCCCCCC--CceeccCCH
Q psy13709 244 CAIDQDPYFRLTRDVAPKLGY------------------VKPALIH---STFFPALQGANTKMSASDLN--SAIFLTDTP 300 (405)
Q Consensus 244 ~G~DQd~~~~l~rdla~r~~~------------------~kp~~l~---~~~lp~L~G~~~KMSkS~~n--saI~L~D~p 300 (405)
+|.||+||++++||+|+|||. +.|..++ +.+||+|+|+++|||||.|+ |+|+|+|+|
T Consensus 190 VG~DQ~qH~eLtRdiA~rfN~~y~~~~~~~~~~~~~~~f~~P~~l~~~~~~ri~~L~~g~~KMSKS~p~~~s~I~L~Ds~ 269 (389)
T PLN02886 190 VGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVPEALIPPAGARVMSLTDGTSKMSKSAPSDQSRINLLDPP 269 (389)
T ss_pred EccchHHHHHHHHHHHHHHhhhccccccccccccCCceecCCeeccCcccceeeeCCCCCCcCCCCCCCCCCeEEecCCH
Confidence 999999999999999999974 3565555 45899999877899999975 799999999
Q ss_pred HHHHHHhhcccccCCccchhhhhhcCCCCchHHHHHHHHhccCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHH
Q psy13709 301 KQVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQH 380 (405)
Q Consensus 301 ~~i~~KI~k~A~t~~~~t~e~~~~~ggn~~v~~~~~~l~~f~~~d~e~eei~~~~~~G~l~~~elK~~La~~i~~~l~~~ 380 (405)
++|++||++ |+||++.++++ ..+++|++++++.++..| ++.++++++++|+ .+++++||+.|++.|+++|.|+
T Consensus 270 e~I~kKI~~-a~TD~~~~i~~--~~p~~p~v~nl~~i~~~~--~~~~~eei~~~~~--~~~~g~~K~~Lae~I~~~L~Pi 342 (389)
T PLN02886 270 DVIANKIKR-CKTDSFPGLEF--DNPERPECNNLLSIYQLV--TGKTKEEVLAECG--DMRWGDFKPLLTDALIEHLSPI 342 (389)
T ss_pred HHHHHHHhc-CCCCCCCCccC--CCCCCcccccHHHHHHHc--cCCCHHHHHHHhc--CCCCchHHHHHHHHHHHHHHHH
Confidence 999999999 99999877654 366888899988888888 4677899999997 3699999999999999999999
Q ss_pred HHHHHHhHH
Q psy13709 381 QEAMKGVTE 389 (405)
Q Consensus 381 qe~r~~~~~ 389 (405)
|+||+++..
T Consensus 343 rer~~~l~~ 351 (389)
T PLN02886 343 QVRYEEIMS 351 (389)
T ss_pred HHHHHHHHc
Confidence 999998875
No 16
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=1.4e-55 Score=427.96 Aligned_cols=249 Identities=24% Similarity=0.321 Sum_probs=221.8
Q ss_pred eeeeecCCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCccchhccC---------CCHHHHHHHHHHHHHHHHHcCC
Q psy13709 94 FLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKN---------IKPEEAKKLAYENAKAIIACGF 164 (405)
Q Consensus 94 ~iytG~~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~~---------lt~e~i~~~~~~~~~~~~A~G~ 164 (405)
++|+||+|||++|||||+++++.++|||++ |+.++|+|||+|+++.+. .+++++++|+.+++++++|+|+
T Consensus 2 ~iy~G~~PTg~~lHLG~~~~~~~~~~lq~~-g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g~ 80 (269)
T cd00805 2 KVYIGFDPTAPSLHLGHLVPLMKLRDFQQA-GHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAILD 80 (269)
T ss_pred eEEEeeCCCCCcccHHHHHHHHHHHHHHHC-CCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHc
Confidence 699999999779999999999999999997 678899999999998754 7899999999999999999999
Q ss_pred C--CCceEEeeCccccChHHHHHHHHHHhhhCHHHHHHHhC------CCCCCccccchhhhhhhcCCCcCchhhhhccCC
Q psy13709 165 K--QDSTFIFSDIDFMNPSFYLNILKIQKLVNGTTVKAIFG------LKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNH 236 (405)
Q Consensus 165 d--p~kt~i~~ns~~~~~~~~~~v~~l~~~~t~~~~~~~~g------~~~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~ 236 (405)
+ |+++.||.|++|+...+|.+++++++.++++++.++.+ .++++|+|+|+||+|||||+++ +.
T Consensus 81 ~~~p~k~~i~~~s~~~~~l~~~~~l~l~~~~~~~~l~~~~~~k~r~~~~~~~~~~~~~YP~lQaaDi~~------l~--- 151 (269)
T cd00805 81 FIPPEKAKFVNNSDWLLSLYTLDFLRLGKHFTVNRMLRRDAVKVRLEEEEGISFSEFIYPLLQAYDFVY------LD--- 151 (269)
T ss_pred cCCCcceEEEEchHhhccCCHHHHHHHHhhCcHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhHHH------Hh---
Confidence 6 99999999999985467778888999999888776443 2468999999999999999763 32
Q ss_pred CCCceeeecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCCCCc-eeccCCHHHHHHHhhcccccCC
Q psy13709 237 KVPCLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSA-IFLTDTPKQVKNKVNKHAYSGG 315 (405)
Q Consensus 237 ~~~~lvp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsa-I~L~D~p~~i~~KI~k~A~t~~ 315 (405)
.|++|+|+||+||+++|||+|+|+++.+|..+++++||+|+| +|||||.+|+. |+++|+|++|++||++ |+|+
T Consensus 152 --~~l~~~G~DQ~~~i~~~rd~a~r~~~~~~~~l~~~ll~~l~G--~KMSKS~~~~~~i~l~dsp~~i~~Ki~~-a~~~- 225 (269)
T cd00805 152 --VDLQLGGSDQRGNITLGRDLIRKLGYKKVVGLTTPLLTGLDG--GKMSKSEGNAIWDPVLDSPYDVYQKIRN-AFDP- 225 (269)
T ss_pred --CCeeEecHHHHHHHHHHHHHHHHhCCCCcEEEeeccccCCCC--CcccCCCCCcccccCCCCHHHHHHHHHc-CCcH-
Confidence 599999999999999999999999999999999999999999 79999999866 7999999999999999 9996
Q ss_pred ccchhhhhhcCCCCchHHHHHHHHhccC-ChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q psy13709 316 QATVEEHRELGGNCDVDIAYQYLTFFLE-DDDKLEQIRKNYTSGALLTGELKKILIDTITPI 376 (405)
Q Consensus 316 ~~t~e~~~~~ggn~~v~~~~~~l~~f~~-~d~e~eei~~~~~~G~l~~~elK~~La~~i~~~ 376 (405)
.+++|+++|+. +++++++++++|.+|.+ ++++|++||++|+++
T Consensus 226 -----------------~v~~~l~~~~~~~~~~~eel~~~~~~~~~-~~~~K~~la~~i~~l 269 (269)
T cd00805 226 -----------------DVLEFLKLFTFLDYEEIEELEEEHAEGPL-PRDAKKALAEELTKL 269 (269)
T ss_pred -----------------HHHHHHHHHHcCCHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhC
Confidence 23666666643 78899999999999977 999999999999863
No 17
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=100.00 E-value=2.3e-56 Score=438.13 Aligned_cols=273 Identities=33% Similarity=0.536 Sum_probs=237.8
Q ss_pred cCCCceeeeecCCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCccchhccCC--CHHHHHHHHHHHHHH--HHHcCC
Q psy13709 89 QGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKNI--KPEEAKKLAYENAKA--IIACGF 164 (405)
Q Consensus 89 ~~~~~~iytG~~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~~l--t~e~i~~~~~~~~~~--~~A~G~ 164 (405)
+++++++||||+||| .|||||+++++.++|||++ |+.++|+|||+|+++.+.. ++++++.++.+++.. ++|+|+
T Consensus 2 ~~~~~~~y~G~~PTg-~lHlG~l~~~~~~~~lq~~-g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~ 79 (292)
T PF00579_consen 2 ENKPFRVYTGIDPTG-DLHLGHLVPIMKLIWLQKA-GFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGL 79 (292)
T ss_dssp THSSEEEEEEEESSS-S-BHHHHHHHHHHHHHHHT-TSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCcEEEEeECCCC-cccchHHHHHHHHHHHHhc-CCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhcc
Confidence 478999999999997 5999999999999999995 7899999999999998755 789999999888888 999999
Q ss_pred CCCceEEeeCcccc-ChHHHHHH------HHHHhhhCHHHHHHHhCCCCCCccccchhhhhhhcCCCcCchhhhhccCCC
Q psy13709 165 KQDSTFIFSDIDFM-NPSFYLNI------LKIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHK 237 (405)
Q Consensus 165 dp~kt~i~~ns~~~-~~~~~~~v------~~l~~~~t~~~~~~~~g~~~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~ 237 (405)
||+++.|+.||+|. ...++..+ .+++++.++.+++++++.++++++|+|+||+|||||+++ +.
T Consensus 80 d~~k~~i~~~s~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Yp~lQaaD~~~------l~---- 149 (292)
T PF00579_consen 80 DPEKTEIFRQSDWPEHMELWWFLSDVARLFSLNRMLRFKDVKKRLKNGEGISLGEFSYPLLQAADILL------LK---- 149 (292)
T ss_dssp HTTTEEEEEGHHHHCHHHHHHHHHHHHBHHHHHHHHHHHHHHHHHSSTTTSBHHHHHHHHHHHHHHHH------TT----
T ss_pred CccceEEEeCCCcccccchhhhhcccccccchhhhhhhcccccccccccCcceeeEEcccccccceee------ec----
Confidence 99999999999998 33333333 357778888888888887789999999999999999662 22
Q ss_pred CCceeeecCCchHHHHHHHHHhhhhCCC----CceeeecccccCCCCCCccCCCCCCCCceeccCCHHHHHHHhhccccc
Q psy13709 238 VPCLIPCAIDQDPYFRLTRDVAPKLGYV----KPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYS 313 (405)
Q Consensus 238 ~~~lvp~G~DQd~~~~l~rdla~r~~~~----kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t 313 (405)
.+++|||+||+||+++|||+|+|+|.. +|++++++++|+|+|. +|||||.+|++|||+|++++|++||++ |+|
T Consensus 150 -~~~~~~G~DQ~~~~~l~rd~a~k~~~~~~~~~p~~l~~~~l~~l~G~-~KMSKS~~ns~I~L~d~~~~i~~Ki~~-a~~ 226 (292)
T PF00579_consen 150 -ADLVPGGIDQRGHIELARDLARKFNYKEIFPKPAGLTSPLLPGLDGQ-KKMSKSDPNSAIFLDDSPEEIRKKIKK-AFC 226 (292)
T ss_dssp -HSEEEEEGGGHHHHHHHHHHHHHHTHHSTSSS-EEEEETCBBSTTSS-SBTTTTTTGGS-BTTTTHHHHHHHHHH-SHT
T ss_pred -cccccccchHHHHHHHHHHHHhhhcccccccCchheeeccccccCCc-cccCccCCccEEEEeccchhHHHHHHH-Hhh
Confidence 469999999999999999999999987 9999999999999994 499999999999999999999999999 999
Q ss_pred CCccchhhhhhcCCCCchHH-HHHHHHhccCCh--hhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhH
Q psy13709 314 GGQATVEEHRELGGNCDVDI-AYQYLTFFLEDD--DKLEQIRKNYTSGALLTGELKKILIDTITPIVT 378 (405)
Q Consensus 314 ~~~~t~e~~~~~ggn~~v~~-~~~~l~~f~~~d--~e~eei~~~~~~G~l~~~elK~~La~~i~~~l~ 378 (405)
++.. +.++..++.+.+++ +++++..+..++ .+++++.++|.+|.++++++|++++++++++++
T Consensus 227 ~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~K~~~~e~~~~~le 292 (292)
T PF00579_consen 227 DPDR--ENPRLLKGRPFISPFLIERLEAFHGNDDYRSLEELLADYVSGELHPGDLKKALAEALNEFLE 292 (292)
T ss_dssp STTS--HHHHHHHHHHTHHHHHHHHHHHHHHHHHESHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCc--ccccccccCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHccCCcChHHHHHHHHHHHHHhhC
Confidence 9987 45566788888888 888888875433 378999999999999999999999999999874
No 18
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.6e-54 Score=434.63 Aligned_cols=274 Identities=19% Similarity=0.225 Sum_probs=227.8
Q ss_pred CceeeeecCCCCCCcchhhhHHHHH-HHHHHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q psy13709 92 PFFLYTGRGPSSDSMHLGHLIPFMF-TKWLQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTF 170 (405)
Q Consensus 92 ~~~iytG~~PT~~slHlGhli~~~~-~~~lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~kt~ 170 (405)
.+++|+|++||| .||||||++.+. ..++|+..+..+++.|+|+|+.. +..+++++++++.++++.|+|||+||+++.
T Consensus 2 ~~rvlSGiqPTG-~lHLGNylGaik~~v~lq~q~~~~~~~~IADlHAlT-~~~dp~~lr~~~~e~aa~~LA~GlDPek~~ 79 (431)
T PRK12284 2 TTRVLTGITTTG-TPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALI-KCDDPARIQRSTLEIAATWLAAGLDPERVT 79 (431)
T ss_pred ceEEEEEecCCC-cchHHHHHHHHHHHHHHHHhCCCcEEEEeechhhcc-CCCCHHHHHHHHHHHHHHHHHhCCCccceE
Confidence 357999999995 899999999863 22366544667888899999977 446899999999999999999999999999
Q ss_pred EeeCcccc---ChHHH----HHHHHHHhhhCHHHHHHH---hCCC--CCCccccchhhhhhhcCCCcCchhhhhccCCCC
Q psy13709 171 IFSDIDFM---NPSFY----LNILKIQKLVNGTTVKAI---FGLK--DFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKV 238 (405)
Q Consensus 171 i~~ns~~~---~~~~~----~~v~~l~~~~t~~~~~~~---~g~~--~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~ 238 (405)
||.||+.. ...|+ ..+++|+||.++++.... -|+. +++++|.|+||+|||||||. ++
T Consensus 80 if~QSdvpeh~EL~wiL~~it~~g~L~Rm~q~K~k~~~~~~~g~~~~~~i~~Gll~YPvLqAADILl------y~----- 148 (431)
T PRK12284 80 FYRQSDIPEIPELTWLLTCVAGKGLLNRAHAYKAAVDKNVAAGEDPDAGVTAGLFMYPVLMAADILM------FN----- 148 (431)
T ss_pred EEECCcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHhhhccccCcccCcchHHhhchHHHHhhhhh------cC-----
Confidence 99999876 12222 123578888888865432 2332 46899999999999999983 43
Q ss_pred CceeeecCCchHHHHHHHHHhhhhCC-------CCceeee---cccccCCCCCCccCCCCCCCCceeccCCHHHHHHHhh
Q psy13709 239 PCLIPCAIDQDPYFRLTRDVAPKLGY-------VKPALIH---STFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVN 308 (405)
Q Consensus 239 ~~lvp~G~DQd~~~~l~rdla~r~~~-------~kp~~l~---~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~ 308 (405)
.++||||.||.||++|+||+|+|||. +.|..+. +++||||+| +|||||.+| +|+|+|+|++|++||+
T Consensus 149 ad~VPVG~DQ~qHlELaRdIA~rFN~~yg~~~F~~Pe~~i~~~~~~I~gLdg--~KMSKS~~n-~I~L~Ds~~~I~kKI~ 225 (431)
T PRK12284 149 AHKVPVGRDQIQHIEMARDIAQRFNHLYGGEFFVLPEAVIEESVATLPGLDG--RKMSKSYDN-TIPLFAPREELKKAIF 225 (431)
T ss_pred CCEEEEcchhHHHHHHHHHHHHHHhhhcCCcccCCCccccccccccccCCCC--ccccCCCCC-EeeecCCHHHHHHHHh
Confidence 68999999999999999999999983 3454333 689999998 799999965 9999999999999999
Q ss_pred cccccCCccchhhhhhcCCCCchHHHHHHHHhccCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhH
Q psy13709 309 KHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQHQEAMKGVT 388 (405)
Q Consensus 309 k~A~t~~~~t~e~~~~~ggn~~v~~~~~~l~~f~~~d~e~eei~~~~~~G~l~~~elK~~La~~i~~~l~~~qe~r~~~~ 388 (405)
+ |+||+..+. .+++|++|++++|+++|+. .+++++++++|.+| ++|++||+.|++.|+++|+|+|+||+++.
T Consensus 226 ~-A~TDs~~~~-----~~~~pe~snLl~i~~~~~~-~~~~eel~~~~~~g-~~~g~~K~~Lae~i~~~L~PiRer~~~l~ 297 (431)
T PRK12284 226 S-IVTDSRAPG-----EPKDTEGSALFQLYQAFAT-PEETAAFRQALADG-IGWGDAKQRLFERIDRELAPMRERYEALI 297 (431)
T ss_pred c-CCCCCCCCC-----CCCCCCcchHHHHHHHhCC-cchHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 999986532 3588999999999999953 35799999999856 99999999999999999999999999887
Q ss_pred H
Q psy13709 389 E 389 (405)
Q Consensus 389 ~ 389 (405)
.
T Consensus 298 ~ 298 (431)
T PRK12284 298 A 298 (431)
T ss_pred c
Confidence 5
No 19
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.2e-53 Score=454.10 Aligned_cols=307 Identities=20% Similarity=0.256 Sum_probs=255.4
Q ss_pred HHHHHcCcccccCCHHHHHHHHhcCCCceeeeecCCCCCCcchhhh-HHHHHHHHHHhcCCccEEEEecCccchhccC--
Q psy13709 66 HHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHL-IPFMFTKWLQDVFDVPLVIQLTDDEKSLWKN-- 142 (405)
Q Consensus 66 ~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~PT~~slHlGhl-i~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~~-- 142 (405)
..+++||.-..+ ..++|.+.+++++++++|+|++||| .|||||+ +..+...-++++ |+.+++.|||+|+++.+.
T Consensus 7 ~~ll~r~~~Evi-~~eeL~~ll~~~~~~rv~sGi~PTG-~lHLGng~~~aik~~~~~q~-g~~~~~lIAD~HAlt~~~~~ 83 (682)
T PTZ00348 7 YKLLRSVGEECI-QESELRNLIEKKPLIRCYDGFEPSG-RMHIAQGIFKAVNVNKCTQA-GCEFVFWVADWFALMNDKVG 83 (682)
T ss_pred HHHHhcCceeec-CHHHHHHHHhcCCCCEEEEeeCCCC-cCeeccHHHHHHHHHHHHhC-CCeEEEEEcchhhhcCCCCC
Confidence 467788876544 6788888888888999999999996 8999994 444433334444 567888899999988543
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCceEEeeCcccc-C--hHHHHHHHHHHhhhCHHHHHHH---hCCCC-CCccccchh
Q psy13709 143 IKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFM-N--PSFYLNILKIQKLVNGTTVKAI---FGLKD-FDSVGKFSF 215 (405)
Q Consensus 143 lt~e~i~~~~~~~~~~~~A~G~dp~kt~i~~ns~~~-~--~~~~~~v~~l~~~~t~~~~~~~---~g~~~-~~s~g~~~Y 215 (405)
.++++++.++.++++.++|||+||+++.||.||+|+ . ..||..+..++++.++.++++. +|+.+ ++++|++.|
T Consensus 84 ~~l~~i~~~~~~~~~~~lA~GlDpeK~~~~~qSd~i~e~~el~w~lv~~v~~l~t~~q~K~~~~~~g~~~~~i~~gll~Y 163 (682)
T PTZ00348 84 GELEKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEEITNHANTYWRTVLDIGRQNTIARIKKCCTIMGKTEGTLTAAQVLY 163 (682)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCccceEEEECcHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHhhcccCCCCchHHHhh
Confidence 368889888889999999999999999999999987 2 4678889999999999999874 45544 589999999
Q ss_pred hhhhhcCCCcCchhhhhccCCCCCceeeecCCchHHHHHHHHHhhhhCC-CCceeeecccccCCCCCCccCCCCCCCCce
Q psy13709 216 PAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGY-VKPALIHSTFFPALQGANTKMSASDLNSAI 294 (405)
Q Consensus 216 pllQaaD~~~~~f~~l~~~~~~~~~lvp~G~DQd~~~~l~rdla~r~~~-~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI 294 (405)
|+|||||+|. ++ ++++|||.||+||++++||+|+++|. ++|.++++++||||+|+++|||||.|+|+|
T Consensus 164 PvLQAADIl~------l~-----adivpvG~DQ~qh~eLaRdia~~~g~~~kpvil~~~~LpGL~gg~~KMSKS~p~naI 232 (682)
T PTZ00348 164 PLMQCADIFF------LK-----ADICQLGLDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAI 232 (682)
T ss_pred hHHHhhcccc------cC-----CCEEEeCccHHHHHHHHHHHHHHhCCCCCceecccccCcCCCCCCCcCCCCCCCCee
Confidence 9999999983 33 57899999999999999999999995 478888899999999766899999998899
Q ss_pred eccCCHHHHHHHhhcccccCCccchhhhhhcCCCC----chHHHHHHHHhccC--C-------h---hhHHHHHHHHhcC
Q psy13709 295 FLTDTPKQVKNKVNKHAYSGGQATVEEHRELGGNC----DVDIAYQYLTFFLE--D-------D---DKLEQIRKNYTSG 358 (405)
Q Consensus 295 ~L~D~p~~i~~KI~k~A~t~~~~t~e~~~~~ggn~----~v~~~~~~l~~f~~--~-------d---~e~eei~~~~~~G 358 (405)
||+|+|++|++||++ |||++...-......+|+| +.|++++|++++.. . + +++++++++|++|
T Consensus 233 ~L~Dspe~I~kKI~k-A~td~~~~~~~~~~d~g~p~~~~e~npvl~i~~~~if~~~g~~~~i~~~~~~~~eele~~y~~g 311 (682)
T PTZ00348 233 FMEDTEEDVARKIRQ-AYCPRVKQSASEITDDGAPVATDDRNPVLDYFQCVVYARPGAVATIDGTTYATYEDLEQAFVSD 311 (682)
T ss_pred cccCCHHHHHHHHHh-CCCCCCcCcccccCCCCCccccCCCCcHHHHHHHHhccccchhcccCCcccCcHHHHHHHHhcC
Confidence 999999999999999 9999742100112356777 77899999998842 1 2 5789999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhHHHHHHHHHh
Q psy13709 359 ALLTGELKKILIDTITPIVTQHQEAMKGV 387 (405)
Q Consensus 359 ~l~~~elK~~La~~i~~~l~~~qe~r~~~ 387 (405)
.++|++||++|++.|++++.|+|++++.-
T Consensus 312 ~l~~~dlK~~lae~l~~~L~PIRe~~~~~ 340 (682)
T PTZ00348 312 EVSEEALKSCLIDEVNALLEPVRQHFASN 340 (682)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999998744
No 20
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=1.1e-53 Score=415.17 Aligned_cols=251 Identities=19% Similarity=0.250 Sum_probs=215.7
Q ss_pred eeeeecCCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCccchhccC---------CCHHHHHHHHHHHHHHHHHcCC
Q psy13709 94 FLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKN---------IKPEEAKKLAYENAKAIIACGF 164 (405)
Q Consensus 94 ~iytG~~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~~---------lt~e~i~~~~~~~~~~~~A~G~ 164 (405)
.+|+||+|||++|||||++|++.++|||+++ ..++++|||.|+.+.+. ++.+++++|+.+++++++|+|+
T Consensus 1 ~iy~G~~PTg~~lHlGh~~~l~~~~~lq~~g-~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g~ 79 (273)
T cd00395 1 TLYCGIDPTADSLHIGHLIGLLTFRRFQHAG-HRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVGI 79 (273)
T ss_pred CeEEeEcCCCCCccHHHHHHHHHHHHHHHCC-CCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4899999997789999999999999999964 55777799999987643 2789999999999999999999
Q ss_pred C--CCceEEeeCcccc-ChHHHHHHHHHHhhhCHHHHHHHhCCC----CCCccccchhhhhhhcCCCcCchhhhhccCCC
Q psy13709 165 K--QDSTFIFSDIDFM-NPSFYLNILKIQKLVNGTTVKAIFGLK----DFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHK 237 (405)
Q Consensus 165 d--p~kt~i~~ns~~~-~~~~~~~v~~l~~~~t~~~~~~~~g~~----~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~ 237 (405)
| |+++.||+|++|. ...++..+..++++++++++.++.++. +++|+|+|+||+|||||+++ +.. +
T Consensus 80 d~~p~k~~i~~ns~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~k~r~~~~~~~~~~~Yp~lQaaD~l~-----l~~---~ 151 (273)
T cd00395 80 FEDPTQATLFNNSDWPGPLAHIQFLRDLGKHVYVNYMERKTSFQSRSEEGISATEFTYPPLQAADFLL-----LNT---T 151 (273)
T ss_pred cCCCcceEEEEccccCCcccHHHHHHHHHccCcHHHHHhChHHHHHhcCCCCchhhhhHHHHHHHHHH-----Hhc---c
Confidence 9 9999999999998 447888888899999998887765543 48999999999999999763 322 3
Q ss_pred CCc-eeeecCCchHHHHHHHHHhhhhC-CCCceeeecccccCCCCCCccCCCCCCCCcee---ccCCHHHHHHHhhcccc
Q psy13709 238 VPC-LIPCAIDQDPYFRLTRDVAPKLG-YVKPALIHSTFFPALQGANTKMSASDLNSAIF---LTDTPKQVKNKVNKHAY 312 (405)
Q Consensus 238 ~~~-lvp~G~DQd~~~~l~rdla~r~~-~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~---L~D~p~~i~~KI~k~A~ 312 (405)
.+| ++|+|+|||||+++|||+|+|+| +++|.+++.|+||+|+| .|||||.+| +|| ++|+|++|++||++ |+
T Consensus 152 ~~~~~vp~G~DQ~~~i~l~rdla~r~n~~~~p~~l~~p~l~~l~G--~KMSKS~~~-~i~l~~~~dsp~~i~~ki~~-a~ 227 (273)
T cd00395 152 EGCDIQPGGSDQWGNITLGRELARRFNGFTIAEGLTIPLVTKLDG--PKFGKSESG-PKWLDTEKTSPYEFYQFWIN-AV 227 (273)
T ss_pred cCCcEEEecHHHHHHHHHHHHHHHHhCCCCCCeEEeeccccCCCC--CcCCCCCCC-CccccccCCCHHHHHHHHHc-cc
Confidence 455 89999999999999999999997 67899999999999999 699999988 666 48999999999999 75
Q ss_pred cCCccchhhhhhcCCCCchHHHHHHHHhccC-ChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q psy13709 313 SGGQATVEEHRELGGNCDVDIAYQYLTFFLE-DDDKLEQIRKNYTSGALLTGELKKILIDTITPI 376 (405)
Q Consensus 313 t~~~~t~e~~~~~ggn~~v~~~~~~l~~f~~-~d~e~eei~~~~~~G~l~~~elK~~La~~i~~~ 376 (405)
.+++++|+++|+. +.+++++|++++.+| .+++++|+.||++|+++
T Consensus 228 ------------------d~~v~~~~~~~t~~~~~ei~~i~~~~~~~-~~~~~~K~~La~~i~~~ 273 (273)
T cd00395 228 ------------------DSDVINILKYFTFLSKEEIERLEQEQYEA-PGYRVAQKTLAEEVTKT 273 (273)
T ss_pred ------------------HhHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhC
Confidence 2456788888864 778999999998877 47899999999999864
No 21
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=100.00 E-value=4.2e-48 Score=391.10 Aligned_cols=270 Identities=22% Similarity=0.244 Sum_probs=221.7
Q ss_pred HHHHHHcCcccccCCHHHHHHHHhcCCCceeeeecCCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCccchhccC--
Q psy13709 65 VHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKN-- 142 (405)
Q Consensus 65 ~~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~~-- 142 (405)
...+.+||++..+++.+.+.+.+++ ++++|+||+|||++|||||+++++.+++||++|+ .++++|||+++.+.++
T Consensus 5 l~~l~~rg~~~~~t~~~~l~~ll~~--~~~vy~G~dPTg~~lHlGh~v~l~~l~~lq~~G~-~~~iligd~ta~igdpsg 81 (377)
T TIGR00234 5 LLLLKKRGLEVQVPEEEELLKLLER--KIKLYVGFDPTAPSLHLGHLVPLLKLRDFQQAGH-EVIVLLGDATALIGDPSG 81 (377)
T ss_pred HHHHHHCCCEEEcCCHHHHHHHhcC--CCEEEEeeCCCCCCccHHHHHHHHHHHHHHHCCC-cEEEEEeccchhhcCCCC
Confidence 5678999999999998888887764 8999999999988999999999999999999865 4566689999988753
Q ss_pred -------CCHHHHHHHHHHHHHHHHHcCCCCCceEEeeCcccc-ChHHHHHHHHHHhhhCHHHHHHHhCC----CCCCcc
Q psy13709 143 -------IKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFM-NPSFYLNILKIQKLVNGTTVKAIFGL----KDFDSV 210 (405)
Q Consensus 143 -------lt~e~i~~~~~~~~~~~~A~G~dp~kt~i~~ns~~~-~~~~~~~v~~l~~~~t~~~~~~~~g~----~~~~s~ 210 (405)
++.+++++|+ ++++.++|+|+||+++.|++|++|+ ...|+..+.++++.+|++++.++.++ .+++++
T Consensus 82 ~~~~R~~~~~~~i~~n~-~~i~~~la~gld~~k~~iv~ns~w~~~~~~~~~l~~~~~~~tv~~m~~~~~~~~R~~~~is~ 160 (377)
T TIGR00234 82 KSEERKLLTREEVQENA-ENIKKQIARFLDFEKAKFVNNSEWLLKLNYIDFIRDLGKIFSVNRMLRRDAFSSRLERGISL 160 (377)
T ss_pred hHHHhhcCCHHHHHHHH-HHHHHHHHHhCChhheEEEECchhcCcCCHHHHHHHHhCceEHHHHHcccHHHHHHhcCCCc
Confidence 5678888888 6788899999999999999999998 45677777777777777776554322 346999
Q ss_pred ccchhhhhhhcCCCcCchhhhhccCCCCCceeeecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCC
Q psy13709 211 GKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDL 290 (405)
Q Consensus 211 g~~~YpllQaaD~~~~~f~~l~~~~~~~~~lvp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~ 290 (405)
++|+||+|||||++ ++. ..++|+|+|||+|++++||+|+|++...+..++.+++++++| .|||||.+
T Consensus 161 ~ef~YpllQa~D~~-----~l~------~di~~gG~DQ~~ni~~g~dLar~~~~~~~~~~t~pLl~~~dg--~KmgKS~~ 227 (377)
T TIGR00234 161 SEFIYPLLQAYDFV-----YLN------VDLQIGGSDQWGNIRKGRDLIRRNLPSLGFGLTVPLLTPADG--EKMGKSGG 227 (377)
T ss_pred hhhhhHHHHHHHHH-----HHc------CCeeEecchhHHHHHHHHHHHHHhcCCCceeeceeeecCCCC--CCccCCCC
Confidence 99999999999965 332 358899999999999999999999988888889999999997 89999976
Q ss_pred CCceeccCC-----------HHHHHHHhhcccccCCccchhhhhhcCCCCchHHHHHHHHhccCChhhHHHHHHHHhcCC
Q psy13709 291 NSAIFLTDT-----------PKQVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGA 359 (405)
Q Consensus 291 nsaI~L~D~-----------p~~i~~KI~k~A~t~~~~t~e~~~~~ggn~~v~~~~~~l~~f~~~d~e~eei~~~~~~G~ 359 (405)
| +||++++ |+++.+||++ |||+. +.+++++|.+ ..+
T Consensus 228 ~-~i~l~~~~~~~~i~~~d~~D~~~~Ki~k-~~t~~----------------------------~~~ei~~l~~--~~~- 274 (377)
T TIGR00234 228 G-AVSLDEGKYDFYQFWINTPDEDVKKILK-LFTFL----------------------------GLEEIEALVE--LKG- 274 (377)
T ss_pred C-cccCCccHhhhhhhhcCCcHHHHHHHHH-HcCCC----------------------------cHHHHHHHHH--hcc-
Confidence 5 6777666 6666666666 66642 3457888855 233
Q ss_pred CCHHHHHHHHHHHHHHhhHHHHHHH
Q psy13709 360 LLTGELKKILIDTITPIVTQHQEAM 384 (405)
Q Consensus 360 l~~~elK~~La~~i~~~l~~~qe~r 384 (405)
.+++.+|+.||.++++++|+-....
T Consensus 275 ~~~~~~q~~la~ei~~~vhg~~~~~ 299 (377)
T TIGR00234 275 PSPREVKENLAKEITKYVHGEEAAL 299 (377)
T ss_pred cCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 6899999999999999999765543
No 22
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.6e-46 Score=374.64 Aligned_cols=288 Identities=25% Similarity=0.319 Sum_probs=228.3
Q ss_pred HHHHHHcCcccccCCHHHHHHHHhcCCCceeeeecCCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCccchhccC-C
Q psy13709 65 VHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKN-I 143 (405)
Q Consensus 65 ~~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~~-l 143 (405)
...|++||++...++++.+.+.++.+ |+.+|+||||||+++||||+|+++++++||++||.|++ +|||+++++.++ -
T Consensus 6 ~~~L~~Rg~~~~i~~ee~l~~ll~~~-~~~~Y~GfDPTa~slHlGhlv~l~kL~~fQ~aGh~~iv-Ligd~ta~IgDpsG 83 (401)
T COG0162 6 LLELIKRGLIEQITDEEELRKLLEEG-PLRVYIGFDPTAPSLHLGHLVPLMKLRRFQDAGHKPIV-LIGDATAMIGDPSG 83 (401)
T ss_pred HHHHHHcCchhccCcHHHHHHHHhcC-CceEEEeeCCCCCccchhhHHHHHHHHHHHHCCCeEEE-EecccceecCCCCC
Confidence 46899999999999999999988855 99999999999999999999999999999999776555 489999998764 2
Q ss_pred CHHHHHHHHH----HHHHHH-HHcCCCCC-ceEEeeCcccc-ChHHHHHHHHHHhhhCHHHH------HHHhCCCCCCcc
Q psy13709 144 KPEEAKKLAY----ENAKAI-IACGFKQD-STFIFSDIDFM-NPSFYLNILKIQKLVNGTTV------KAIFGLKDFDSV 210 (405)
Q Consensus 144 t~e~i~~~~~----~~~~~~-~A~G~dp~-kt~i~~ns~~~-~~~~~~~v~~l~~~~t~~~~------~~~~g~~~~~s~ 210 (405)
+.++.+.++. +|++.+ .++|..++ ++.+++|++|+ ..+|+..+.++++++|++++ +.|+..+.++++
T Consensus 84 k~e~r~~l~~e~v~~n~~~i~~ql~~~ld~k~~~v~ns~w~~~~~y~~~l~~~g~~~sv~rml~~d~~~~R~~~~~~is~ 163 (401)
T COG0162 84 KSEERKLLTRETVLENAETIKKQLGKFLDNKAEFVNNSDWLKKLNYLDFLRDVGKHFSVNRMLRRDDVKKRLEREQGISF 163 (401)
T ss_pred CHHHHhhccHHHHHHHHHHHHHHhcccCCcceEEEechHHhCcCCHHHHHHHHHhHccHHHHHHhhhHHHHhccCCCCch
Confidence 3344433332 222222 23354455 99999999999 66777777766666666655 456666678999
Q ss_pred ccchhhhhhhcCCCcCchhhhhccCCCCCceeeecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCC
Q psy13709 211 GKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDL 290 (405)
Q Consensus 211 g~~~YpllQaaD~~~~~f~~l~~~~~~~~~lvp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~ 290 (405)
+||+||+|||||++ +|.. .+-.+|+|||.++.+|||+++|+|+++++++|.|+|++|+| +|||||.+
T Consensus 164 ~Ef~YpLmQayD~~-----~L~~------dlq~GG~DQ~~ni~~grdl~rr~g~~~~~~lt~PLL~~ldG--~KmgKs~~ 230 (401)
T COG0162 164 TEFNYPLLQAYDFV-----YLNK------DLQLGGSDQWGNILAGRDLIRRLGQKKVVGLTTPLLTGLDG--KKMGKSEG 230 (401)
T ss_pred hhhhhHHHHHHHHH-----HHcc------chhcCChHHHHHHHHHHHHHHHhCCCCeEEEEeccccCCCC--CcccccCC
Confidence 99999999999954 4432 23338999999999999999999999999999999999999 59999998
Q ss_pred CCceeccCC---HHHHHHHhhcccccCCccchhhhhhcCCCCchHHHHHHHHhccC-ChhhHHHHHHHHhcCCCCHHHHH
Q psy13709 291 NSAIFLTDT---PKQVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLE-DDDKLEQIRKNYTSGALLTGELK 366 (405)
Q Consensus 291 nsaI~L~D~---p~~i~~KI~k~A~t~~~~t~e~~~~~ggn~~v~~~~~~l~~f~~-~d~e~eei~~~~~~G~l~~~elK 366 (405)
| ++|++.+ |.++.++.++ .+...+..|+.++++ +.+++++|.+....+. ++.++|
T Consensus 231 ~-a~~~~s~~~Sp~~~yq~~~~-------------------i~D~~~~~~~~~~t~l~~~eI~~i~~~~~~~~-~~r~~k 289 (401)
T COG0162 231 G-AVWLDSEKTSPYDFYQYWMN-------------------IEDADVKRFLKLLTFLSLEEIEEIEKYVLKGP-EPREAK 289 (401)
T ss_pred C-ceEccCCCCCcHhhhhcHhc-------------------CcHHHHHHHHHHhCcCChHHHHHHHHHhhcCC-ChHHHH
Confidence 8 9999875 4445444444 344566788888854 4479999999888886 899999
Q ss_pred HHHHHHHHHhhHHHHHHHHHhH
Q psy13709 367 KILIDTITPIVTQHQEAMKGVT 388 (405)
Q Consensus 367 ~~La~~i~~~l~~~qe~r~~~~ 388 (405)
+.||.+++..+|+-....+...
T Consensus 290 ~~LA~e~~~~~hG~~~a~~a~~ 311 (401)
T COG0162 290 KLLAKEVTKLVHGEEAAEAAEE 311 (401)
T ss_pred HHHHHHhhHhhcCHHHHHHHHH
Confidence 9999999999999877765544
No 23
>KOG2713|consensus
Probab=100.00 E-value=2.1e-45 Score=346.85 Aligned_cols=276 Identities=21% Similarity=0.342 Sum_probs=229.6
Q ss_pred CceeeeecCCCCCCcchhhhHHHHHHHH--HHhcCCc--cEEEEecCccchhccCCCHHHHHHHHHHHHHHHHHcCCCCC
Q psy13709 92 PFFLYTGRGPSSDSMHLGHLIPFMFTKW--LQDVFDV--PLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQD 167 (405)
Q Consensus 92 ~~~iytG~~PT~~slHlGhli~~~~~~~--lQ~~~~~--~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~ 167 (405)
+-++++|++||| ++|||||++.+ -.| ||+..+. -+.+.|.|.|+-..- -++.+++++..++.+.++|||+||+
T Consensus 13 ~~rvfSGIQPTG-~~HLGNYLGai-~~Wv~LQ~~~d~~~~~~f~vvDlHaITvp-~dp~~lrq~~~dm~A~lLAcGIdp~ 89 (347)
T KOG2713|consen 13 PKRVFSGIQPTG-IPHLGNYLGAI-KPWVQLQNEYDKNILVLFSVVDLHAITVP-QDPAELRQATHDMAASLLACGIDPE 89 (347)
T ss_pred cceeEeccCCCC-Cchhhhhhhhh-hHHHHHHHHhcCCceEEEEEeeceeecCC-CChHHHHHHHHHHHHHHHHhccCcc
Confidence 568999999995 99999999985 578 8987654 245558898874322 2345999999999999999999999
Q ss_pred ceEEeeCcccc---ChHHH----HHHHHHHhhhCHHHHHHHhCCCCCCccccchhhhhhhcCCCcCchhhhhccCCCCCc
Q psy13709 168 STFIFSDIDFM---NPSFY----LNILKIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPC 240 (405)
Q Consensus 168 kt~i~~ns~~~---~~~~~----~~v~~l~~~~t~~~~~~~~g~~~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~ 240 (405)
|+.+|.||+.. ...|+ ..+++|++|..+++...+++ ....++|.|+||+||||||+ ||+ .+
T Consensus 90 Ks~lF~QS~Vpqh~el~WlLsslt~mg~L~rm~Q~KeKs~~~~-~~~~~vGLftYPvLqAADIL------LYk-----sT 157 (347)
T KOG2713|consen 90 KSSLFVQSDVPQHAELSWLLSSLTTMGRLARMPQWKEKSERFK-VGDVPVGLFTYPVLQAADIL------LYK-----ST 157 (347)
T ss_pred cceeeeeccchHHHHHHHHHHhccchHHHHhhHHHHhhhhhhc-cCccceeeecchhHhhhhHh------hhc-----cc
Confidence 99999998865 22222 23578999999988887654 46789999999999999987 454 58
Q ss_pred eeeecCCchHHHHHHHHHhhhhCC-------CCceeee---cccccCCCCCCccCCCCCCC--CceeccCCHHHHHHHhh
Q psy13709 241 LIPCAIDQDPYFRLTRDVAPKLGY-------VKPALIH---STFFPALQGANTKMSASDLN--SAIFLTDTPKQVKNKVN 308 (405)
Q Consensus 241 lvp~G~DQd~~~~l~rdla~r~~~-------~kp~~l~---~~~lp~L~G~~~KMSkS~~n--saI~L~D~p~~i~~KI~ 308 (405)
.||||.||-||++++|++|+++|. +.|..+. +..+.+|..|.+|||||+|| +.|.|+|+|+.|.+||+
T Consensus 158 hVPVGeDQsQHleL~r~lA~~fN~~Y~~~~fpvP~~il~~~~~rV~SL~dpekKMSKSd~n~~s~I~l~DS~~~I~~Ki~ 237 (347)
T KOG2713|consen 158 HVPVGEDQSQHLELARHLAQAFNKTYGTEIFPVPEQILRQSHARVMSLRDPEKKMSKSDPNPKSRINLTDSPDLIVKKIK 237 (347)
T ss_pred cccCCccHHHHHHHHHHHHHHHhhhccCeeecCcHHHHhhhhhhhhhccChhhhcccCCCCCcceEEecCCHHHHHHHHH
Confidence 899999999999999999999983 4555443 57899999999999999986 68999999999999999
Q ss_pred cccccCCccchhhhhhcCCCCchHHHHHHHHhccCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhH
Q psy13709 309 KHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQHQEAMKGVT 388 (405)
Q Consensus 309 k~A~t~~~~t~e~~~~~ggn~~v~~~~~~l~~f~~~d~e~eei~~~~~~G~l~~~elK~~La~~i~~~l~~~qe~r~~~~ 388 (405)
| |.||.-..+.+. .++.|.+.++..++... ++..++++.+++++ +.++++|..+|++|.+.|+|+|++++++.
T Consensus 238 k-a~TD~~~~vtYd--~~~RpgvsNLlni~aaV--t~~s~eeV~~~~a~--~~~~~fK~~vaeAvie~L~PIr~~fee~~ 310 (347)
T KOG2713|consen 238 K-AQTDNTSGVTYD--PANRPGVSNLLNIYAAV--TGKSIEEVVEESAN--MSTADFKDNVAEAVIEHLAPIRTEFEELI 310 (347)
T ss_pred H-HhcccccceeeC--CccccchhHHHHHHHHH--cCCCHHHHHHHhcc--CCHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 9 999965555443 67889999888888887 56788999988775 89999999999999999999999999876
Q ss_pred H
Q psy13709 389 E 389 (405)
Q Consensus 389 ~ 389 (405)
.
T Consensus 311 ~ 311 (347)
T KOG2713|consen 311 N 311 (347)
T ss_pred c
Confidence 5
No 24
>KOG2144|consensus
Probab=100.00 E-value=8.4e-43 Score=329.80 Aligned_cols=299 Identities=21% Similarity=0.269 Sum_probs=235.4
Q ss_pred HHHHHcCcccccCCHHHHHHHHhcCCCceeeeecCCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCccchhccC-CC
Q psy13709 66 HHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKN-IK 144 (405)
Q Consensus 66 ~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~~-lt 144 (405)
-.|++|++-.. -..++|.+.+++ +.+.+|+|+.||| +||+|.++|++.++.|-+| ||.|.|++||+++||.+. -.
T Consensus 10 ~~lItrnlqE~-lgee~lk~iL~e-r~l~~YwGtaptG-rpHiay~vpm~kiadflkA-GC~VtIl~AD~hA~LdNmkap 85 (360)
T KOG2144|consen 10 YKLITRNLQEV-LGEEELKNILAE-RALKCYWGTAPTG-RPHIAYFVPMMKIADFLKA-GCEVTILFADLHAFLDNMKAP 85 (360)
T ss_pred HHHHHHHHHHH-hCHHHHHHHHhc-cCceeeecCCCCC-CcceeeeeehhHHHHHHhc-CCeEEEEehHHHHHHhcccch
Confidence 35556655442 245666666664 7789999999995 9999999999999999998 799999999999999663 46
Q ss_pred HHHHHHHHHHHHHHHHH----cCCCCCceEEeeCcccc-ChHHHHHHHHHHhhhCHHHHHHH--hC--CCCCCccccchh
Q psy13709 145 PEEAKKLAYENAKAIIA----CGFKQDSTFIFSDIDFM-NPSFYLNILKIQKLVNGTTVKAI--FG--LKDFDSVGKFSF 215 (405)
Q Consensus 145 ~e~i~~~~~~~~~~~~A----~G~dp~kt~i~~ns~~~-~~~~~~~v~~l~~~~t~~~~~~~--~g--~~~~~s~g~~~Y 215 (405)
++.+.+++.++-..|.+ .+.+.++..++..+++. +..|-.++.++++.+|....+.. .+ ..+..+++.+.|
T Consensus 86 ~e~~~~rv~yYe~~Ik~~l~~~nv~lEkL~fv~gs~yq~sk~ytld~~rl~~~~~~hdak~agaevvkqve~plls~llY 165 (360)
T KOG2144|consen 86 DELVIRRVGYYEKEIKAALGSINVPLEKLKFVKGSNYQLSKYYTLDMYRLSSNVTQHDAKKAGAEVVKQVENPLLSGLLY 165 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcHHHHhhhcccccccCccchhhHHHHHhhccHhHHHHhhhhHHHhhcchhhhhhhh
Confidence 78888887665554443 24555666666666775 45555667788888887776652 22 246789999999
Q ss_pred hhhhhcCCCcCchhhhhccCCCCCceeeecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCCCCcee
Q psy13709 216 PAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIF 295 (405)
Q Consensus 216 pllQaaD~~~~~f~~l~~~~~~~~~lvp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~ 295 (405)
|.|||+|+++ +. .+.-++|.||+..|.++|++++.+|++||.++.+|++|||++ ++|||||+|+|+|+
T Consensus 166 P~MQalDe~~------L~-----vD~qfgGvDQRKIf~~A~eylp~l~ykKrihLmnpMvPGL~q-~~KMSsSd~~SkId 233 (360)
T KOG2144|consen 166 PGMQALDEFY------LE-----VDAQFGGVDQRKIFVLAEEYLPDLGYKKRIHLMNPMVPGLAQ-GEKMSSSDPLSKID 233 (360)
T ss_pred hhHHHhhHHH------Hh-----hhHHhcCccHHHHHHHHHHhhhhhCcccceeecCCCCccccc-cCccccCCcccccc
Confidence 9999999873 33 233358999999999999999999999999999999999996 58999999999999
Q ss_pred ccCCHHHHHHHhhcccccCCccchhhhhhcCCCCchH----HHHHHHHhccC-------------ChhhHHHHHHHHhcC
Q psy13709 296 LTDTPKQVKNKVNKHAYSGGQATVEEHRELGGNCDVD----IAYQYLTFFLE-------------DDDKLEQIRKNYTSG 358 (405)
Q Consensus 296 L~D~p~~i~~KI~k~A~t~~~~t~e~~~~~ggn~~v~----~~~~~l~~f~~-------------~d~e~eei~~~~~~G 358 (405)
|.|+|++|.+||+| |||.++.. .+|+... ++|.++..+.. .-+.+|+++++|.+|
T Consensus 234 llD~~~~V~kKI~k-AfCePg~v-------e~Ng~L~fvkyvvfP~~~e~~~~~i~r~ek~GG~~tf~syed~e~~y~~~ 305 (360)
T KOG2144|consen 234 LLDEPADVNKKIKK-AFCEPGNV-------EGNGCLSFVKYVVFPIFEEFGVEVIDRPEKFGGNKTFKSYEDIEKDYEEG 305 (360)
T ss_pred cccCHHHHHHHHHH-hcCCCCCc-------CCCcHHHHHHHHHhhhHHhcCceeecchhhcCCcchhHHHHHHHHHHHhC
Confidence 99999999999999 99976542 2444322 34444444320 125699999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhHHHHHHHHHhH
Q psy13709 359 ALLTGELKKILIDTITPIVTQHQEAMKGVT 388 (405)
Q Consensus 359 ~l~~~elK~~La~~i~~~l~~~qe~r~~~~ 388 (405)
++||+|||+.|+.+|+++|.++|+..+...
T Consensus 306 ~lhPgDLK~~l~~alN~lL~~ir~~~~~~~ 335 (360)
T KOG2144|consen 306 ELHPGDLKKGLEKALNELLQPIREEFSNWP 335 (360)
T ss_pred CcChHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 999999999999999999999999988744
No 25
>KOG2623|consensus
Probab=100.00 E-value=9.6e-41 Score=326.73 Aligned_cols=287 Identities=18% Similarity=0.235 Sum_probs=217.3
Q ss_pred HHHHHHcCcccccCCH---HHHHHHHh-cCCCceeeeecCCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCccchhc
Q psy13709 65 VHHLLRRGIFFSHRDM---HSILNLYE-QGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLW 140 (405)
Q Consensus 65 ~~~l~~RGl~~~~~d~---~~ll~~~~-~~~~~~iytG~~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e~~l~ 140 (405)
+..+..||++ ++.-. ....+.++ .+-|.++||||||||+|||+||++++|.+.|+|++||.|+.++ |+.++.+.
T Consensus 33 L~~l~aR~l~-~~s~Pet~~~~~~~L~~rglp~~vYcGfDPTA~SLHvGNLl~lm~L~hfqr~Gh~~ialI-GgATa~vG 110 (467)
T KOG2623|consen 33 LTELKARGLF-QTSFPETLSKCSEDLNGRGLPQYVYCGFDPTAESLHVGNLLALMVLIHFQRAGHRPIALI-GGATASVG 110 (467)
T ss_pred HHHHHhcccc-cccCCCccchhhhhhhcCCCCceEEecCCCcHHhhhhcchHHHHHHHHHHHcCCCceEEe-cccccccc
Confidence 6688999999 44322 24455554 3448999999999999999999999999999999999988874 44444433
Q ss_pred c---------CCCHHHHHHHHHHH---HHHHHH-------cCCCCCceEEeeCcccc----ChHHHHHHH---HHHhhhC
Q psy13709 141 K---------NIKPEEAKKLAYEN---AKAIIA-------CGFKQDSTFIFSDIDFM----NPSFYLNIL---KIQKLVN 194 (405)
Q Consensus 141 ~---------~lt~e~i~~~~~~~---~~~~~A-------~G~dp~kt~i~~ns~~~----~~~~~~~v~---~l~~~~t 194 (405)
+ .+..+.+++|++.. +..+.+ +|..-.+-.|++|++|+ -.+|+..++ |+++|+.
T Consensus 111 DPSGrktER~~l~~d~~~~N~~~I~~ql~~if~n~~~~~~~~~s~g~~~ivnN~dW~~d~~llDFLa~vGrh~RvgsMLa 190 (467)
T KOG2623|consen 111 DPSGRKTERGQLAEDTREANSRSITQQLCKIFENHPEYYRDGSSQGKYIIVNNSDWYKDIKLLDFLAEVGRHFRVGSMLA 190 (467)
T ss_pred CCCCCccchhhhhhHHHHHhHHHHHHHHHHHHhcChhhhcCCcccCceeEeechHHhhhchHHHHHHHhchhhhHHHHHH
Confidence 2 23445566666532 233322 34433567899999998 268888884 7999999
Q ss_pred HHHHHHHhCCCCCCccccchhhhhhhcCCCcCchhhhhccCCCCCceee-ecCCchHHHHHHHHHhhhhCC--CCceeee
Q psy13709 195 GTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIP-CAIDQDPYFRLTRDVAPKLGY--VKPALIH 271 (405)
Q Consensus 195 ~~~~~~~~g~~~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~lvp-~G~DQd~~~~l~rdla~r~~~--~kp~~l~ 271 (405)
+++|+.|+...+++|+.||+|++||||| |+||++ +++|-+| +|+|||+|+..+.|+++|+-. ..++.++
T Consensus 191 r~SV~~RLes~~GlSftEFtYQ~lQAYD-----fy~L~~---~~g~~~QlGGsDQwGNitaG~dlI~ki~~~~~~vfGlT 262 (467)
T KOG2623|consen 191 RDSVKSRLESPNGLSFTEFTYQLLQAYD-----FYHLYE---NYGCRFQLGGSDQWGNITAGTDLIRKIMPIQAFVFGLT 262 (467)
T ss_pred HHHHHHhhcCCCCCcHHHHHHHHHHHHh-----HHHHHH---hcCeeEEecccccccccchHHHHHHHhcccccceeeee
Confidence 9999999999999999999999999999 889997 4699998 689999999999999999854 2355556
Q ss_pred cccccCCCCCCccCCCCCCCCceeccCCHHHHHHHhhcccccCCccchhhhhhcCCCCchHHHHHHHHhccC-ChhhHHH
Q psy13709 272 STFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLE-DDDKLEQ 350 (405)
Q Consensus 272 ~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~~~~t~e~~~~~ggn~~v~~~~~~l~~f~~-~d~e~ee 350 (405)
.|+++.-+| .|++||.+| ||||+.+ |...|.++ +-+-.-||.+ +-++|+.|+. +-+++++
T Consensus 263 ~PLlTsstG--~KlGKSaGn-AvWLdp~------~tspy~lY---------QfF~~~pDd~-v~k~LklfTfl~l~eI~~ 323 (467)
T KOG2623|consen 263 FPLLTSSTG--AKLGKSAGN-AVWLDPS------KTSPYHLY---------QFFASLPDDD-VEKFLKLFTFLPLEEIKQ 323 (467)
T ss_pred eeeEecCcc--hhhccCCCc-eEEecCc------cCCcHHHH---------HHHHhCchhH-HHHHHHHHhcCCHHHHHH
Confidence 666666666 899999999 9999986 33333222 1122344433 3566666643 7789999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhhHHHH
Q psy13709 351 IRKNYTSGALLTGELKKILIDTITPIVTQHQ 381 (405)
Q Consensus 351 i~~~~~~G~l~~~elK~~La~~i~~~l~~~q 381 (405)
|.+++.+. +..+-.++.||++|+.++|+..
T Consensus 324 I~~~H~k~-P~~r~aQ~~LA~eVTr~VHG~e 353 (467)
T KOG2623|consen 324 ILEEHRKE-PSQRIAQKLLAAEVTRMVHGKE 353 (467)
T ss_pred HHHHHhcC-hhhhhHHHHHHHHHHHHHcccc
Confidence 99998865 6888999999999999999854
No 26
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.8e-34 Score=307.60 Aligned_cols=239 Identities=14% Similarity=0.193 Sum_probs=205.4
Q ss_pred HHHhcCCccEEEEecCccchhccC--CCHHHHHHHHHHHHHHHHHcCCCCCceEEeeCcccc-C--hHHHHHHHHHHhhh
Q psy13709 119 WLQDVFDVPLVIQLTDDEKSLWKN--IKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFM-N--PSFYLNILKIQKLV 193 (405)
Q Consensus 119 ~lQ~~~~~~v~I~i~D~e~~l~~~--lt~e~i~~~~~~~~~~~~A~G~dp~kt~i~~ns~~~-~--~~~~~~v~~l~~~~ 193 (405)
.|+.+.||.++|+||||+|+++++ -++++|++.++.+++.|.|+|+|++ +.|+..|+.+ . .+||..|+++++.+
T Consensus 401 ~~~~~~g~~~~illADwhA~lN~k~~G~l~~I~~~~~y~~~~~~a~G~~~~-v~fv~~sd~~~~~~~~Yw~~v~~ia~~~ 479 (682)
T PTZ00348 401 FIAAHSDGTVTLVLPDWSAVASDEITGEEKDISAALEVNCALLKAYGLPSE-VKIVRENEVILGNPNDFWVSVIGIARKN 479 (682)
T ss_pred HHHHcCCCeEEEEeehhHHHhcCccCCCHHHHHHHHHHHHHHHHHcCCCCC-cEEEEchHhhhcCchhHHHHHHHHHHhc
Confidence 478888999999999999999886 5799999999999999999999998 9888888887 3 39999999999999
Q ss_pred CHHHHHHHhCCCCCCccccchhhhhhhcCCCcCchhhhhccCCCCCceeeecCCchHHHHHHHHHhhhhCCCCceeeecc
Q psy13709 194 NGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHST 273 (405)
Q Consensus 194 t~~~~~~~~g~~~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~lvp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~ 273 (405)
|++++++..| .+..+++++.||+||++|+++ ++ .++.++|+||+..++++|+++++.. +|..+.+.
T Consensus 480 tl~r~~r~~g-~~~~~~s~~iYP~MQ~~Di~~------L~-----~di~~gG~DQRki~mlAre~~~~~~--~~~~~~~~ 545 (682)
T PTZ00348 480 LLSHVEELYG-GELRNAGQVIAALMRVATALM------LS-----ASHVISTSLDGGINEFAREYTKGRI--ECIQALEG 545 (682)
T ss_pred cHHHHHHHhc-CCcccHHHHHHHHHHHHHHHh------cC-----CCeeecChhHHHHHHHHHHhccccc--cchhhcCC
Confidence 9999999887 666799999999999999984 32 3556799999999999999999654 34446788
Q ss_pred cccCCCCCCccCCCCCCCCceeccCCHHHHHHHhhcccccCCccchhhhhhcCCCCchHHHHHHHHhcc--------C--
Q psy13709 274 FFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFL--------E-- 343 (405)
Q Consensus 274 ~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~~~~t~e~~~~~ggn~~v~~~~~~l~~f~--------~-- 343 (405)
++|+|.++..+|++|+++|+|||+|++++|++||++ |||.++. .+||- ++|.+|+. +
T Consensus 546 ~~p~l~~~~~~~~~~s~~s~i~~~D~~~~i~~Ki~k-A~Cpp~~--------~~Npv----l~~~~y~~~~~~~~~i~R~ 612 (682)
T PTZ00348 546 RVPALHRPGAAPAVLGADDVLYLDDNDMDIRRKIKK-AYSAPNE--------EANPV----ISVAQHLLAQQGALSIERG 612 (682)
T ss_pred CCccccccccccCCCCCCCeeeecCCHHHHHHHHHh-CCCCCCC--------CCCcH----HHHHHHHhcCCCeEEEecc
Confidence 899999777899998889999999999999999999 9997632 13553 44444431 1
Q ss_pred -------ChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHH
Q psy13709 344 -------DDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQHQEAMK 385 (405)
Q Consensus 344 -------~d~e~eei~~~~~~G~l~~~elK~~La~~i~~~l~~~qe~r~ 385 (405)
..+.+++++++|.+|++||.+||.++++.|+++++|+|+.++
T Consensus 613 e~~Gg~~~y~s~eeL~~dy~~g~lhP~DLK~av~~~l~~~l~pvr~~~~ 661 (682)
T PTZ00348 613 EANGGNVAYNTPEALVADCGSGALHPADLKAAVSQLLLDRSAAARALLS 661 (682)
T ss_pred cccCCCeeeCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 125699999999999999999999999999999999999986
No 27
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.38 E-value=4.1e-12 Score=111.89 Aligned_cols=65 Identities=23% Similarity=0.146 Sum_probs=54.3
Q ss_pred hhhhhhcCCCcCchhhhhccCCCCCceeeecCCchHHHHHHHHHhhhhCCC-CceeeecccccCCCCCCccCCCCC
Q psy13709 215 FPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGYV-KPALIHSTFFPALQGANTKMSASD 289 (405)
Q Consensus 215 YpllQaaD~~~~~f~~l~~~~~~~~~lvp~G~DQd~~~~l~rdla~r~~~~-kp~~l~~~~lp~L~G~~~KMSkS~ 289 (405)
|++.|+||++. +.. ...+++++|.||++|++.+++++++++.. +|..++.++|++..| +|||||.
T Consensus 78 y~~~~~a~~~~-----~~~---~~~~i~~~G~Dq~~h~~~~~~i~~~~~~~~~p~~~~~~~l~~~~g--~KmSks~ 143 (143)
T cd00802 78 YMFLQAADFLL-----LYE---TECDIHLGGSDQLGHIELGLELLKKAGGPARPFGLTFGRVMGADG--TKMSKSK 143 (143)
T ss_pred HHHHHHHHHHH-----Hhh---CCcEEEEechhHHHHHHHHHHHHHHhCCCCCceEEEeCCeECCCC--CcCCCCC
Confidence 99999999652 222 23477889999999999999999999764 688999999999887 7999984
No 28
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.16 E-value=2.8e-10 Score=108.78 Aligned_cols=169 Identities=12% Similarity=0.148 Sum_probs=113.8
Q ss_pred CCCCCCcchhhhHHHHHHHH-HHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHHHcCCCCCceE-------E
Q psy13709 100 GPSSDSMHLGHLIPFMFTKW-LQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTF-------I 171 (405)
Q Consensus 100 ~PT~~slHlGhli~~~~~~~-lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~kt~-------i 171 (405)
.|| |.|||||+..++ ..| +.+..+..+++-|-|... ......+...+.+++..+|+++++.. +
T Consensus 9 sPt-G~LHlG~~~~al-~n~l~ar~~~G~~ilRieDtd~-------~r~~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~ 79 (239)
T cd00808 9 SPT-GFLHIGGARTAL-FNYLFARKHGGKFILRIEDTDQ-------ERSVPEAEEAILEALKWLGLDWDEGPDVGGPYGP 79 (239)
T ss_pred CCC-CcccHHHHHHHH-HHHHHHHHcCCeEEEEECcCCC-------CCCchHHHHHHHHHHHHcCCCCCcCCccCCCCCC
Confidence 366 599999999985 566 333344556665766211 11222334456777888899998732 6
Q ss_pred eeCccccChHHHHHH-HHHHhhhCHHHHHHHhCCCCCCccccchhhhhhhcCCCcCchhhhhccCCCCCceeeecCCchH
Q psy13709 172 FSDIDFMNPSFYLNI-LKIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDP 250 (405)
Q Consensus 172 ~~ns~~~~~~~~~~v-~~l~~~~t~~~~~~~~g~~~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~lvp~G~DQd~ 250 (405)
+.||+- .+.|..+ -++.. -| -|..+|++-+++|-. +.+ -+.|+.|.|+.+
T Consensus 80 ~~QS~r--~~~y~~~~~~L~~----------~g------dg~ptY~~a~~vDD~------~~~-----ithViRG~D~~~ 130 (239)
T cd00808 80 YRQSER--LEIYRKYAEKLLE----------KG------DGFPTYHLANVVDDH------LMG-----ITHVIRGEEHLS 130 (239)
T ss_pred EeeeCC--HHHHHHHHHHHHH----------cC------CCCcccccHHHHhHH------hcC-----CCEEEEChhhhh
Confidence 666664 3444443 22211 01 378899999999954 232 477889999999
Q ss_pred HHHHHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCCCCceecc----CCHHHHHHHhh
Q psy13709 251 YFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLT----DTPKQVKNKVN 308 (405)
Q Consensus 251 ~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~----D~p~~i~~KI~ 308 (405)
+....+.+.+.+|.+.|...|.+++++.+| .||||+.++.+|--. -+|+.|.+-+.
T Consensus 131 ~t~~q~~l~~aLg~~~p~~~h~pll~~~~g--~KLSKR~~~~~l~~lr~~G~~p~ai~~~l~ 190 (239)
T cd00808 131 STPKQILLYEALGWEPPKFAHLPLILNPDG--KKLSKRKGDTSISDYREEGYLPEALLNYLA 190 (239)
T ss_pred ChHHHHHHHHHcCCCCCceEeeccccCCCC--CcccCCCCCccHHHHHHCCCCHHHHHHHHH
Confidence 999999999999999998888899888888 899999876444211 24555555443
No 29
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=98.92 E-value=8.2e-08 Score=101.54 Aligned_cols=56 Identities=25% Similarity=0.321 Sum_probs=48.7
Q ss_pred ceeeecCCchH-HHHHHHHHhh-hhCCCCceeeecccccCCCCCCccCCCCCCCCceeccC
Q psy13709 240 CLIPCAIDQDP-YFRLTRDVAP-KLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 240 ~lvp~G~DQd~-~~~l~rdla~-r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
++.|.|.||.. ....++.+++ .+|.++|..++..++..-+| +|||||.+| .|.+.|
T Consensus 236 d~e~~GkDh~~~s~~~~~~i~~~ilg~~~P~~~~y~~v~~~~G--~KMSKSkGN-~i~~~d 293 (510)
T PRK00750 236 DFEPFGKDHASASYDTSKKIAREILGGEPPEPFVYELFLDKKG--EKISKSKGN-VITIED 293 (510)
T ss_pred CEEeeCcccCcchHHHHHHHHHHHcCCCCCeeeeeeeEEeCCC--CcccccCCC-ccCHHH
Confidence 56789999999 9999999999 89998998888888876666 899999987 888766
No 30
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=98.72 E-value=1.3e-07 Score=90.10 Aligned_cols=152 Identities=14% Similarity=0.208 Sum_probs=100.2
Q ss_pred CCCCCCcchhhhHHHHHHHH-HHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEeeCcccc
Q psy13709 100 GPSSDSMHLGHLIPFMFTKW-LQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFM 178 (405)
Q Consensus 100 ~PT~~slHlGhli~~~~~~~-lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~kt~i~~ns~~~ 178 (405)
.|| |.|||||+..++ ..| +-+..+..+++-|=|... ..........+.+++..+|++.+.- ++.||+-.
T Consensus 9 sPt-G~lHlG~~r~al-~n~l~Ar~~~G~~iLRieDtD~-------~R~~~~~~~~I~~dL~wlGl~wd~~-~~~QS~r~ 78 (230)
T cd00418 9 SPT-GYLHIGHARTAL-FNFAFARKYGGKFILRIEDTDP-------ERSRPEYVESILEDLKWLGLDWDEG-PYRQSDRF 78 (230)
T ss_pred CCC-CcccHHHHHHHH-HHHHHHHHcCCeEEEEeCcCCC-------CCCChHHHHHHHHHHHHcCCCCCCC-eeehhcCH
Confidence 366 599999999985 466 444556667776655211 1112233446677788899988753 45565553
Q ss_pred ChHHHHHH-HHHHhhhCHHHHHHHhCCCCCCccccchhhhhhhcCCCcCchhhhhccCCCCCceeeecCCchHHHHHHHH
Q psy13709 179 NPSFYLNI-LKIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRD 257 (405)
Q Consensus 179 ~~~~~~~v-~~l~~~~t~~~~~~~~g~~~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~lvp~G~DQd~~~~l~rd 257 (405)
+.|..+ -+|.+. + |..+|-+--+.| .++.+ -+.|..|.|+..+-..-+-
T Consensus 79 --~~y~~~~~~L~~~--------------g---g~p~Y~la~vvD------D~~~g-----IThViRG~D~l~st~~q~~ 128 (230)
T cd00418 79 --DLYRAYAEELIKK--------------G---GYPLYNFVHPVD------DALMG-----ITHVLRGEDHLDNTPIQDW 128 (230)
T ss_pred --HHHHHHHHHHHHc--------------C---CCcccccccccc------ccccC-----CCEEEECHhhhhchHHHHH
Confidence 444433 222211 1 445555544444 12222 3667789999999888899
Q ss_pred HhhhhCCCCceeeecccccCCCCCCccCCCCCCCCc
Q psy13709 258 VAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSA 293 (405)
Q Consensus 258 la~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsa 293 (405)
+.+.+|.++|...|.|++...+| +||||+.++.+
T Consensus 129 l~~~Lg~~~P~~~H~pll~~~~g--~KLSKr~~~~~ 162 (230)
T cd00418 129 LYEALGWEPPRFYHFPRLLLEDG--TKLSKRKLNTT 162 (230)
T ss_pred HHHHcCCCCCeEEEeeeeeCCCC--CCccCcCCCcC
Confidence 99999999999999999999888 89999986633
No 31
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=98.60 E-value=6.8e-07 Score=90.27 Aligned_cols=56 Identities=27% Similarity=0.354 Sum_probs=44.7
Q ss_pred ceeeecCCchHH---HHHHHHHhh-hhCCCCceeeecccccCCCCCCccCCCCCCCCceeccC
Q psy13709 240 CLIPCAIDQDPY---FRLTRDVAP-KLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 240 ~lvp~G~DQd~~---~~l~rdla~-r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
+.-|.|.||..+ +..++.+++ .+|.+.|..+..-++- +.| +.|||||.+| .|.+.|
T Consensus 229 d~E~~GkDh~~~ggs~~~~~~i~~~ilg~~~P~~~~ye~V~-l~g-g~KMSKSkGn-vI~~~d 288 (353)
T cd00674 229 DFEPFGKDHASAGGSYDTGKEIAREIFGGEPPVPVMYEFIG-LKG-GGKMSSSKGN-VITPSD 288 (353)
T ss_pred CEEeeCccccccccHHHHHHHHHHHHhCCCCCeEEEeeeEE-eCC-CCccCCCCCC-cCCHHH
Confidence 456789999888 999999999 8998888776666654 555 2699999987 888776
No 32
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=98.33 E-value=5.4e-06 Score=87.67 Aligned_cols=199 Identities=17% Similarity=0.208 Sum_probs=104.8
Q ss_pred CCCceeeeecCCCCCCcchhhhHHHH----HHHHHHhcCCccEEEEecCcc---------------chhccCCC-----H
Q psy13709 90 GKPFFLYTGRGPSSDSMHLGHLIPFM----FTKWLQDVFDVPLVIQLTDDE---------------KSLWKNIK-----P 145 (405)
Q Consensus 90 ~~~~~iytG~~PT~~slHlGhli~~~----~~~~lQ~~~~~~v~I~i~D~e---------------~~l~~~lt-----~ 145 (405)
++++.+=||+.||| .+||||+.-.+ +.+++...|.-..+|..+|+. +++...++ .
T Consensus 17 ~~~~~~~tg~~psG-~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~ 95 (515)
T TIGR00467 17 KNLYTVASGITPSG-HIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPE 95 (515)
T ss_pred CCeEEEecCCCCCC-CccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCC
Confidence 34789999999995 99999977643 344577766555566677876 23333332 1
Q ss_pred HHHHHHHH----HHHHHHHHcCCCCCceEEeeCcccc-ChHHHHHHHHHHhhhCHHHHHHHh----CCC--C--------
Q psy13709 146 EEAKKLAY----ENAKAIIACGFKQDSTFIFSDIDFM-NPSFYLNILKIQKLVNGTTVKAIF----GLK--D-------- 206 (405)
Q Consensus 146 e~i~~~~~----~~~~~~~A~G~dp~kt~i~~ns~~~-~~~~~~~v~~l~~~~t~~~~~~~~----g~~--~-------- 206 (405)
....+++. ...+.+-.+|++ ..++++++.+ +..| ...++.+ .-..+.++.++ |.. +
T Consensus 96 g~~~s~~~h~~~~~~~~l~~~gi~---~e~~s~te~Y~sG~~-~~~i~~~-L~~~~~I~~il~~~~~~~~~~~~~P~~pi 170 (515)
T TIGR00467 96 GCKTSYAEHFLIPFLESLPVLGIN---PEFIRASKQYTSGLY-ASQIKIA-LDHRKEISEILNEYRTSKLEENWYPISVF 170 (515)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCe---EEEEEHHHhhhcCCh-HHHHHHH-HHhHHHHHHHHHHhcCCccCCCceeeeee
Confidence 11233333 444445567885 4678888877 3333 2222211 11233333332 211 1
Q ss_pred CCccccchhhhhhhcCCCc-Cchh---------hhhccC---------------CCCCceeeecCCchHHH---HHHHHH
Q psy13709 207 FDSVGKFSFPAIQAAPSFS-STFP---------LIFNKN---------------HKVPCLIPCAIDQDPYF---RLTRDV 258 (405)
Q Consensus 207 ~~s~g~~~YpllQaaD~~~-~~f~---------~l~~~~---------------~~~~~lvp~G~DQd~~~---~l~rdl 258 (405)
..+.|.+..|+. .+|.=. -.|. .+.++. .+ -+.-|.|.|+.... ..+.++
T Consensus 171 c~~cGrv~~~~~-~~~~~~~v~Y~c~cG~~g~~~~~~g~~KL~WkvdW~~RW~~lg-V~~Ep~GkDH~~~ggsy~~~~~i 248 (515)
T TIGR00467 171 CENCGRDTTTVN-NYDNEYSIEYSCECGNQESVDIYTGAIKLPWRVDWPARWKIEK-VTFEPAGKDHAAAGGSYDTGVNI 248 (515)
T ss_pred cCCcCccCceEE-EecCCceEEEEcCCCCEEEEeecCCCcccCCCCCcHhhHhhhC-cccccCCCCccCccCCchhHHHH
Confidence 234566666655 444110 0010 000000 00 13456788876533 445566
Q ss_pred hh-hhCCCCceeeecccccCCCCCCccCCCCCCCCceeccC
Q psy13709 259 AP-KLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 259 a~-r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
|+ -+|..+|..+..-++- |.|.+.|||||.+| .|.+.|
T Consensus 249 a~~~l~~~~P~~~~ye~v~-L~~~g~KMSKS~Gn-~itl~d 287 (515)
T TIGR00467 249 AKEIFQYSPPVTVQYEWIS-LKGKGGKMSSSKGD-VISVKD 287 (515)
T ss_pred HHHHhCCCCCcCcEEEEEE-EcCCCccccCCCCC-CccHHH
Confidence 65 4666666544322222 55656899999988 777654
No 33
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.70 E-value=0.0048 Score=65.32 Aligned_cols=117 Identities=17% Similarity=0.216 Sum_probs=76.3
Q ss_pred ceeeecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCCCCceeccC------CHHHHHHHhhccccc
Q psy13709 240 CLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTD------TPKQVKNKVNKHAYS 313 (405)
Q Consensus 240 ~lvp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D------~p~~i~~KI~k~A~t 313 (405)
+.|..|.||..+.-.-.-+.+.+|...|...|.+++.+++| +||||..+.. .+.+ .|+.|.+-+.....+
T Consensus 198 thVIRG~d~~~~t~~q~~l~~aLG~~~p~~~H~plv~~~~g--~KLSKR~g~~--~i~~~r~~G~~Peai~n~la~LG~s 273 (513)
T PRK14895 198 THIIRGDDHLTNAARQLAIYQAFGYAVPSMTHIPLIHGADG--AKLSKRHGAL--GIEAYKDMGYLPESLCNYLLRLGWS 273 (513)
T ss_pred CEEEECchHhhhHHHHHHHHHHcCCCCCeEEEEEeEEcCCC--CccccccCch--hHHHHHHCCCCHHHHHHHHHHhCCC
Confidence 34448999999988888899999999999999999999988 8999997643 3332 677777766532222
Q ss_pred CCccchhhhhhcCCCCchHHHHHHHHhcc----------CChhhHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy13709 314 GGQATVEEHRELGGNCDVDIAYQYLTFFL----------EDDDKLEQIRKNYTSGALLTGELKKILIDTI 373 (405)
Q Consensus 314 ~~~~t~e~~~~~ggn~~v~~~~~~l~~f~----------~~d~e~eei~~~~~~G~l~~~elK~~La~~i 373 (405)
.+ +.++...-++...|. .|.+++..+-..|-. .+...++...+...+
T Consensus 274 ~~------------~~e~~~~~el~~~F~~~~v~~s~~~FD~~KL~wlN~~yi~-~l~~~el~~~~~~~l 330 (513)
T PRK14895 274 HG------------DDEIISMTQAIDWFNLDSLGKSPSKLDFAKMNSLNAHYLR-MLDNDSLTSKTVEIL 330 (513)
T ss_pred CC------------CcCCCCHHHHHhhCCHHhCcCCcCcCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHH
Confidence 11 111112222233331 266788888888875 366666655554444
No 34
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=97.69 E-value=0.0034 Score=66.05 Aligned_cols=66 Identities=18% Similarity=0.155 Sum_probs=51.6
Q ss_pred ceeeecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCCCCceeccC------CHHHHHHHhhc
Q psy13709 240 CLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTD------TPKQVKNKVNK 309 (405)
Q Consensus 240 ~lvp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D------~p~~i~~KI~k 309 (405)
+.|..|.||..+...-.-+.+.+|.+.|...|.+++..++| +||||..+ ++.|.+ .|+.+.+-+..
T Consensus 199 thvIrG~d~~~~t~~~~~l~~aLg~~~p~~~H~p~l~~~~g--~kLSKR~g--~~~l~~l~~~g~~p~a~~~~~~~ 270 (470)
T TIGR00464 199 THVIRGEDHISNTPKQILIYQALGWKIPVFAHLPMILDEDG--KKLSKRDG--ATSIMQFKEQGYLPEALINYLAL 270 (470)
T ss_pred CEEEECchhhcCHHHHHHHHHHcCCCCCeEEEEeeeecCCC--ccccccCC--CccHHHHHHCCCCHHHHHHHHHH
Confidence 44458999999998888999999999999889999888888 89999975 555543 56666555533
No 35
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.51 E-value=0.0011 Score=63.62 Aligned_cols=162 Identities=17% Similarity=0.209 Sum_probs=93.9
Q ss_pred eecCCCCCCcchhhhHHHHHHHH-HHhcCCccEEEEecCccchhccCC--CHHHHHHHHHHHHHHHHHcCCCCCceEEee
Q psy13709 97 TGRGPSSDSMHLGHLIPFMFTKW-LQDVFDVPLVIQLTDDEKSLWKNI--KPEEAKKLAYENAKAIIACGFKQDSTFIFS 173 (405)
Q Consensus 97 tG~~PT~~slHlGhli~~~~~~~-lQ~~~~~~v~I~i~D~e~~l~~~l--t~e~i~~~~~~~~~~~~A~G~dp~kt~i~~ 173 (405)
+|-.|| |.|||||+..+++ .| +.+..+..+++=|.|... .. ..+.. ...+.+++..+|++++. ++.
T Consensus 6 faPsPt-G~lHiG~~rtal~-~~l~Ar~~~G~~ilRieDtD~----~r~~~~~~~---~~~i~~dL~wLGl~~d~--~~~ 74 (240)
T cd09287 6 FAPNPN-GPLHLGHARAAIL-NGEYAKMYGGKFILRFDDTDP----RTKRPDPEA---YDMIPEDLEWLGVKWDE--VVI 74 (240)
T ss_pred CCCCCC-CCccHHHHHHHHH-HHHHHHHcCCEEEEeeCcCCC----CcccchHHH---HHHHHHHHHHcCCCCCC--ccc
Confidence 455677 4999999999864 55 556677778887887432 12 22222 23467778889998874 566
Q ss_pred CccccChHHHHHH-HHH-HhhhCHHHHHHHhCCCCCCccccchhhhhhhcCCCcCchhhhhccCCCCCceeeecCCchHH
Q psy13709 174 DIDFMNPSFYLNI-LKI-QKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPY 251 (405)
Q Consensus 174 ns~~~~~~~~~~v-~~l-~~~~t~~~~~~~~g~~~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~lvp~G~DQd~~ 251 (405)
||+.+ +.|..+ -+| .+-..+. ..+. .+.- ..||..|=|-++- .++.+ + +.|..|.|-..+
T Consensus 75 qS~r~--~~y~~~~~~Li~~G~aY~--~~~~---~~~~---~i~ptY~la~vVD---D~~~g----I-ThViRg~d~~~~ 136 (240)
T cd09287 75 ASDRI--ELYYEYARKLIEMGGAYV--HPRT---GSKY---RVWPTLNFAVAVD---DHLLG----V-THVLRGKDHIDN 136 (240)
T ss_pred hhccH--HHHHHHHHHHHHcCCccc--Cccc---CCcE---EEEEccccceeee---ccccC----C-CeEEechhhhhC
Confidence 66654 333332 222 1111111 1111 1111 2234434332210 11111 2 455688887777
Q ss_pred HHHHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCC
Q psy13709 252 FRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDL 290 (405)
Q Consensus 252 ~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~ 290 (405)
-..-.-+.+.+|.+.|...|.|++. ..| +||||...
T Consensus 137 t~~q~~l~~~Lg~~~P~~~H~pll~-~~~--~kLSKR~~ 172 (240)
T cd09287 137 TEKQRYIYEYFGWEYPETIHWGRLK-IEG--GKLSTSKI 172 (240)
T ss_pred CHHHHHHHHHcCCCCCcEEeeeeec-CCC--Ceeccccc
Confidence 6666778888999999888888885 345 89999963
No 36
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=97.51 E-value=0.00019 Score=72.45 Aligned_cols=65 Identities=26% Similarity=0.412 Sum_probs=28.5
Q ss_pred ceeeecCCchH---HHHHHHHHhhh-hCCCCceeeecccccCCCCCCccCCCCCCCCceeccC-----CHHHHHHHh
Q psy13709 240 CLIPCAIDQDP---YFRLTRDVAPK-LGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTD-----TPKQVKNKV 307 (405)
Q Consensus 240 ~lvp~G~DQd~---~~~l~rdla~r-~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D-----~p~~i~~KI 307 (405)
+.-|.|.|+-. -...+.+||++ +|.++|..+.--++. +.|. +|||||.+| .|-+.| +|+.++==+
T Consensus 236 dfEp~GKDH~~~GGS~d~~~~I~~~i~g~~pP~~~~YE~~~-~~g~-~kmSsSkG~-~~t~~e~L~~~~PE~lr~l~ 309 (360)
T PF01921_consen 236 DFEPFGKDHASPGGSYDTSKRIAREILGYEPPVPFPYEFFL-DKGG-GKMSSSKGN-GITPEEWLEYAPPESLRYLM 309 (360)
T ss_dssp SEEEEEHHHHCTTSHHHHHHHHHHHCC-----EEEEE--EE-ES----------------HHHHHTTS-HHHHHHHH
T ss_pred eeccCCCccCCCCCChhhHHHHHHHHhCCCCCCCCCeeEEE-eCCC-cccccCCCC-ccCHHHHHHhcCHHHHHHHH
Confidence 45678888777 88899999955 788888766543332 3442 599999988 776665 666655433
No 37
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=97.42 E-value=0.022 Score=60.15 Aligned_cols=65 Identities=17% Similarity=0.144 Sum_probs=50.6
Q ss_pred ceeeecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCCCCceeccC------CHHHHHHHhh
Q psy13709 240 CLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTD------TPKQVKNKVN 308 (405)
Q Consensus 240 ~lvp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D------~p~~i~~KI~ 308 (405)
+.|..|.||..+.-.-.-+.+.+|...|...|.+++..++| +||||-.+ ++.+.+ .|+.+.+-+.
T Consensus 209 thvIrG~d~~~~t~~q~~l~~alG~~~p~~~H~pli~~~~g--~klSKR~g--~~~l~~l~~~G~~p~Ai~n~l~ 279 (476)
T PRK01406 209 THVIRGEDHLSNTPKQILLYEALGWEVPVFAHLPLILGPDG--KKLSKRHG--ATSVEQYRDMGYLPEALLNYLA 279 (476)
T ss_pred CEEEECchhhcCHHHHHHHHHHhCCCCCeEEEeeeeeCCCC--CcccCcCC--ccCHHHHHHCCCCHHHHHHHHH
Confidence 44558999999988888899999999999889899888887 89999975 555543 5555555443
No 38
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.34 E-value=0.0035 Score=67.14 Aligned_cols=78 Identities=15% Similarity=0.231 Sum_probs=50.8
Q ss_pred CceeeeecCCCCCCcchhhhHHHHHHHH-HHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q psy13709 92 PFFLYTGRGPSSDSMHLGHLIPFMFTKW-LQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTF 170 (405)
Q Consensus 92 ~~~iytG~~PT~~slHlGhli~~~~~~~-lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~kt~ 170 (405)
.+....+=.|| |.|||||+..+++ .| +.+.++..+++-|-|.... +. .........+..++..+|++++.
T Consensus 101 ~V~tRFaPsPt-G~LHIGharaall-n~~~Ar~~~G~~iLRidDTDpk----~~-R~~~e~~~~I~edL~wLGl~wD~-- 171 (567)
T PRK04156 101 KVVMRFAPNPS-GPLHLGHARAAIL-NDEYAKMYGGKFILRFEDTDPR----TK-RPDPEAYDMILEDLKWLGVKWDE-- 171 (567)
T ss_pred eEEEEeCCCCC-CCccHHHHHHHHH-HHHHHHHcCCEEEEeEccCCCC----cc-cchHHHHHHHHHHHHHcCCCCCC--
Confidence 46667677777 4999999999864 55 5666777777777773211 11 11222334567778888999875
Q ss_pred EeeCcccc
Q psy13709 171 IFSDIDFM 178 (405)
Q Consensus 171 i~~ns~~~ 178 (405)
++.+|+.+
T Consensus 172 ~~~qSdr~ 179 (567)
T PRK04156 172 VVIQSDRL 179 (567)
T ss_pred ccCcccCH
Confidence 45666664
No 39
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.34 E-value=0.0034 Score=59.30 Aligned_cols=77 Identities=16% Similarity=0.117 Sum_probs=44.7
Q ss_pred CCCceeeeecCCCCCCcchhhhHHHH---HHHHHHhcCCccEEEEec-Ccc--chh----ccCCCHHH-HHHHHHHHHHH
Q psy13709 90 GKPFFLYTGRGPSSDSMHLGHLIPFM---FTKWLQDVFDVPLVIQLT-DDE--KSL----WKNIKPEE-AKKLAYENAKA 158 (405)
Q Consensus 90 ~~~~~iytG~~PT~~slHlGhli~~~---~~~~lQ~~~~~~v~I~i~-D~e--~~l----~~~lt~e~-i~~~~~~~~~~ 158 (405)
++.-...||--|- +.+||||+-+++ +++++++..|..|..+.+ |++ +.+ ....++.+ ++.+.....++
T Consensus 19 ~~~~~y~~gpt~y-~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~~~ 97 (213)
T cd00672 19 GLVTMYVCGPTVY-DYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFED 97 (213)
T ss_pred CCceEEEeCCccC-CCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3333445677777 589999976653 344445554555555433 322 111 12456544 45555677788
Q ss_pred HHHcCCCCC
Q psy13709 159 IIACGFKQD 167 (405)
Q Consensus 159 ~~A~G~dp~ 167 (405)
+.++|+.+.
T Consensus 98 ~~~l~i~~~ 106 (213)
T cd00672 98 MKALNVLPP 106 (213)
T ss_pred HHHcCCCCC
Confidence 888998863
No 40
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=97.21 E-value=0.0068 Score=60.12 Aligned_cols=46 Identities=17% Similarity=0.124 Sum_probs=34.9
Q ss_pred ecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCCC
Q psy13709 244 CAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLN 291 (405)
Q Consensus 244 ~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~n 291 (405)
=|.|...+--.-.-|.+.||.+.|...|.|++...+| +|+||+...
T Consensus 198 RG~D~l~~t~~Q~~l~~aLg~~~P~y~H~pll~~~~g--~kLSKr~~~ 243 (299)
T PRK05710 198 RGADLLDSTPRQIYLQQLLGLPTPRYLHLPLVLNADG--QKLSKQNGA 243 (299)
T ss_pred eChhhhhcCHHHHHHHHHcCCCCCeEEEeecccCCCC--CcccccCCc
Confidence 4555544444445667778999999999999999998 899999643
No 41
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=97.13 E-value=0.0015 Score=69.36 Aligned_cols=57 Identities=25% Similarity=0.310 Sum_probs=41.6
Q ss_pred eecCCchHHHHHHHHHhhhhCCCCce---eeecc--cccCCCCCCccCCCCCCCCceeccCCHHH
Q psy13709 243 PCAIDQDPYFRLTRDVAPKLGYVKPA---LIHST--FFPALQGANTKMSASDLNSAIFLTDTPKQ 302 (405)
Q Consensus 243 p~G~DQd~~~~l~rdla~r~~~~kp~---~l~~~--~lp~L~G~~~KMSkS~~nsaI~L~D~p~~ 302 (405)
-+|.||..|+....-+++.+|..++. .+|.. ++-+=+ |+|||||.+| .|++.|=-++
T Consensus 278 V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~h~~~glv~~~~--g~KMSkR~Gn-~i~l~dll~~ 339 (507)
T PRK01611 278 VVGADHHGHFKRLKAALKALGYDPDALEVLLHQMVGLVRGGE--GVKMSTRAGN-VVTLDDLLDE 339 (507)
T ss_pred EECCChHHHHHHHHHHHHHcCCCcccceEEEEEEEEeeECCC--CCcccCCCCc-eeEHHHHHHH
Confidence 47999999999999999999986442 33432 332223 4899999988 9998874444
No 42
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.03 E-value=0.0065 Score=58.29 Aligned_cols=159 Identities=14% Similarity=0.148 Sum_probs=85.2
Q ss_pred CCCCCCcchhhhHHHHHHHH-HHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEeeCcccc
Q psy13709 100 GPSSDSMHLGHLIPFMFTKW-LQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFM 178 (405)
Q Consensus 100 ~PT~~slHlGhli~~~~~~~-lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~kt~i~~ns~~~ 178 (405)
.|| |.|||||+..+++ .| +.+..+..+++-|=|... ..........+.+++..+|++.+. ++.||+-.
T Consensus 9 sPt-G~lHlG~~~~al~-~~l~Ar~~~G~~iLRieDtD~-------~R~~~~~~~~I~~dL~wlGl~wD~--~~~QS~r~ 77 (238)
T cd00807 9 EPN-GYLHIGHAKAILL-NFGYAKKYGGRCNLRFDDTNP-------EKEEEEYVDSIKEDVKWLGIKPYK--VTYASDYF 77 (238)
T ss_pred CCC-CcccHHHHHHHHH-HHHHHHHhCCEEEEEecCCCC-------cccchHHHHHHHHHHHHcCCCCCC--ceecccCH
Confidence 356 5999999999864 55 555556667766655211 112223344567778889999884 55566653
Q ss_pred ChHHHHHHH-HHH-hhhCHHHHHHHhCCCCCCccccchhhhhhhcCCCcCchhhhhccCCCCCceeeecCCchHHHHHHH
Q psy13709 179 NPSFYLNIL-KIQ-KLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTR 256 (405)
Q Consensus 179 ~~~~~~~v~-~l~-~~~t~~~~~~~~g~~~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~lvp~G~DQd~~~~l~r 256 (405)
+.|..+. +|- +-..+-.. ..+.. -..||..|=|-.+- .++.+ + +.|..|.|...+-..-.
T Consensus 78 --~~Y~~~~~~L~~~g~aY~~~------~~~~~--~~i~ptY~lA~vVD---D~~~g----I-ThVvRG~D~l~~t~~Q~ 139 (238)
T cd00807 78 --DQLYEYAEQLIKKGKAYVHH------RTGDK--WCIYPTYDFAHPIV---DSIEG----I-THSLCTLEFEDRRPSYY 139 (238)
T ss_pred --HHHHHHHHHHHHcCCeecCC------CCCCC--EEEEeccccceEee---ccccC----C-CeEEechhhhcCCHHHH
Confidence 4444432 221 11111100 00111 11234444332210 11111 2 45557888766655556
Q ss_pred HHhhhhCCCCceeeecccccCCCCCCccCCCCCC
Q psy13709 257 DVAPKLGYVKPALIHSTFFPALQGANTKMSASDL 290 (405)
Q Consensus 257 dla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~ 290 (405)
-+.+.+|.+.|..++-.-+ ..+| .|+||...
T Consensus 140 ~l~~aLg~~~P~~~~~~hl-n~~g--~kLSKR~~ 170 (238)
T cd00807 140 WLCDALRLYRPHQWEFSRL-NLTY--TVMSKRKL 170 (238)
T ss_pred HHHHHcCCCCCceeEEEEE-CCCC--CCccCcCc
Confidence 7788899998854422222 5555 89999975
No 43
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=97.01 E-value=0.0096 Score=58.32 Aligned_cols=49 Identities=16% Similarity=0.106 Sum_probs=37.0
Q ss_pred eeeecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCCC
Q psy13709 241 LIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLN 291 (405)
Q Consensus 241 lvp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~n 291 (405)
.|.-|.|...+--.-.-|.+.||.+.|...|.|+|...+| +|+||+...
T Consensus 188 hViRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~~~g--~kLSKR~~~ 236 (272)
T TIGR03838 188 HVVRGADLLDSTPRQIYLQRLLGLPPPRYLHLPLVVNADG--EKLSKQNGA 236 (272)
T ss_pred EEEeCHhhhhccHHHHHHHHHhCCCCCeEEechhhhCCCC--CeeeccCCc
Confidence 3445666555544445677778999999899999999998 899999754
No 44
>PLN02627 glutamyl-tRNA synthetase
Probab=96.99 E-value=0.069 Score=56.92 Aligned_cols=65 Identities=17% Similarity=0.153 Sum_probs=45.6
Q ss_pred eeeecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCCCCceeccC------CHHHHHHHhhc
Q psy13709 241 LIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTD------TPKQVKNKVNK 309 (405)
Q Consensus 241 lvp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D------~p~~i~~KI~k 309 (405)
.|.-|.|...+----.-|.+-||.+.|...|.|+|.+-+| +||||.++. +.+.+ .|+.|.+-+..
T Consensus 252 HViRG~D~l~nTpkQi~ly~aLg~~~P~f~Hlpli~~~~g--~KLSKR~~~--~~v~~~r~~G~~PeAi~nyla~ 322 (535)
T PLN02627 252 HVIRAEEHLPNTLRQALIYKALGFPMPRFAHVSLILAPDR--SKLSKRHGA--TSVGQFREMGYLPDAMVNYLAL 322 (535)
T ss_pred EEEechhhhcChHHHHHHHHHcCCCCCeEEEccceeCCCC--CccccccCC--ccHHHHHHCCCCHHHHHHHHHH
Confidence 3445666555444444666778999999999999999888 899999754 44432 67777776644
No 45
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=96.78 E-value=0.01 Score=62.44 Aligned_cols=76 Identities=16% Similarity=0.189 Sum_probs=46.1
Q ss_pred CCceee-eecCCCCCCcchhhhHHHH---HHHHHHhcCCccEEEE--ecCccchh-c----cCCCHHHH-HHHHHHHHHH
Q psy13709 91 KPFFLY-TGRGPSSDSMHLGHLIPFM---FTKWLQDVFDVPLVIQ--LTDDEKSL-W----KNIKPEEA-KKLAYENAKA 158 (405)
Q Consensus 91 ~~~~iy-tG~~PT~~slHlGhli~~~---~~~~lQ~~~~~~v~I~--i~D~e~~l-~----~~lt~e~i-~~~~~~~~~~ 158 (405)
+.+.+| ||--|. +.+||||+.+++ +++++++..|..|..+ ++|..-.+ . ...++.++ ..+...+.++
T Consensus 22 ~~v~~yvcgPtvy-~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~ 100 (463)
T PRK00260 22 GKVKMYVCGPTVY-DYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHED 100 (463)
T ss_pred CcceEEEeCCccC-CCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 345666 898898 499999977643 4444555555555554 34432111 1 14566554 4455677888
Q ss_pred HHHcCC-CCC
Q psy13709 159 IIACGF-KQD 167 (405)
Q Consensus 159 ~~A~G~-dp~ 167 (405)
+.++|+ .|+
T Consensus 101 ~~~Lgi~~~d 110 (463)
T PRK00260 101 MDALNVLPPD 110 (463)
T ss_pred HHHcCCCCCC
Confidence 888998 443
No 46
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=96.76 E-value=0.02 Score=60.02 Aligned_cols=47 Identities=26% Similarity=0.387 Sum_probs=33.7
Q ss_pred CCceeeeecCCCCCCcchhhhHHH----HHHHHHHhcCCccEEEEecCccch
Q psy13709 91 KPFFLYTGRGPSSDSMHLGHLIPF----MFTKWLQDVFDVPLVIQLTDDEKS 138 (405)
Q Consensus 91 ~~~~iytG~~PT~~slHlGhli~~----~~~~~lQ~~~~~~v~I~i~D~e~~ 138 (405)
....+=||+.||| .+||||+-=+ +..+-|.+.|+-.-+|.++|+.--
T Consensus 19 ~~~~v~tGisPSG-~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~ 69 (521)
T COG1384 19 DEYVVATGISPSG-LIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDP 69 (521)
T ss_pred CcEEEecCcCCCC-CcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcc
Confidence 5678999999995 9999996533 233447777775556778887543
No 47
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=96.65 E-value=0.23 Score=51.82 Aligned_cols=130 Identities=20% Similarity=0.157 Sum_probs=72.9
Q ss_pred eeeecCCchHHHHHHHHHhhhhCCCC-ceeeecccccCCCCCCccCCCCCCCCceeccC------CHHHHHHHhhccccc
Q psy13709 241 LIPCAIDQDPYFRLTRDVAPKLGYVK-PALIHSTFFPALQGANTKMSASDLNSAIFLTD------TPKQVKNKVNKHAYS 313 (405)
Q Consensus 241 lvp~G~DQd~~~~l~rdla~r~~~~k-p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D------~p~~i~~KI~k~A~t 313 (405)
.|.-|.|...+--.-.-|.+-+|.+. |...|.|++.+-+| +|+||..+.. .+.+ .|+.|.+-+...
T Consensus 193 hViRG~d~l~~tp~Qi~Ly~aLg~~~pp~f~Hlpli~~~~g--~KLSKR~~~~--~v~~~r~~G~~PeAi~n~l~~l--- 265 (433)
T PRK12410 193 LIIRGEDHVSNTPKQILIREALGYNKEITYAHLPIILNEEG--KKMSKRDNAS--SVKWLLEQGFLPSAIANYLILL--- 265 (433)
T ss_pred EEEechhhhhCcHHHHHHHHHcCCCCCCeEEEeeeeeCCCC--CeeecccChh--hHHHHHHCCCCHHHHHHHHHHh---
Confidence 34456666555444446667789876 48889999999888 8999997642 3322 666666665442
Q ss_pred CCccchhhhhhcCCCCchHHHHHHHHhcc----------CChhhHHHHHHHHhcCCCCHHHHHHHH---HHHHHHhhHHH
Q psy13709 314 GGQATVEEHRELGGNCDVDIAYQYLTFFL----------EDDDKLEQIRKNYTSGALLTGELKKIL---IDTITPIVTQH 380 (405)
Q Consensus 314 ~~~~t~e~~~~~ggn~~v~~~~~~l~~f~----------~~d~e~eei~~~~~~G~l~~~elK~~L---a~~i~~~l~~~ 380 (405)
|.... + ++...-+++..|. .|.++++.+-..|-.. +...++.+.+ .+.+..++.-+
T Consensus 266 G~~~~-~---------e~~~~~eli~~F~~~~i~~~~~~~d~~kL~~~N~~~i~~-~~~~~l~~~~~~~~~~~~~~~~l~ 334 (433)
T PRK12410 266 GNKTP-K---------EIFTLEEAIEWFDIEKISKSPAKFDLKKLRFINREHLKM-LDDERLSKLLGFKDKDLGGLAKLY 334 (433)
T ss_pred CCCCc-c---------cccCHHHHHHhCCHhhCCCccccCCHHHHHHHHHHHHHh-CCHHHHHHHHhhhhHHHHHHHHHH
Confidence 21110 0 1111112222220 1445666666666553 5555555543 12356666677
Q ss_pred HHHHHHhH
Q psy13709 381 QEAMKGVT 388 (405)
Q Consensus 381 qe~r~~~~ 388 (405)
|++.+.+.
T Consensus 335 ~~r~~~l~ 342 (433)
T PRK12410 335 LQEASTLN 342 (433)
T ss_pred HHhcCcHH
Confidence 77766554
No 48
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=96.59 E-value=0.015 Score=58.21 Aligned_cols=52 Identities=15% Similarity=0.076 Sum_probs=40.8
Q ss_pred ceeeecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCCCCc
Q psy13709 240 CLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSA 293 (405)
Q Consensus 240 ~lvp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsa 293 (405)
+.|.-|.|-..+--.-+-|.+.||.+.|.-.|.+++...+| +|+||+....+
T Consensus 201 THViRG~D~l~~t~~Q~~L~~~Lg~~~P~~~H~pl~l~~~g--~kLSKR~~~~~ 252 (314)
T PF00749_consen 201 THVIRGEDLLSSTPRQILLYEALGWPPPPYAHLPLILNEDG--KKLSKRKGAKS 252 (314)
T ss_dssp SEEEEEGGGTTCHHHHHHHHHHCTSSS-EEEEEEEEEETTS--SBSSTTCSHHB
T ss_pred CeEEEccccccccHHHHHHHHHhCCCCcceEeeeeeecCCC--cEechhhcccc
Confidence 55667888777666667788889998899899999998888 89999976544
No 49
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=96.57 E-value=0.023 Score=60.37 Aligned_cols=74 Identities=18% Similarity=0.255 Sum_probs=46.4
Q ss_pred eeeecCCC-CCCcchhhhHHHHHHHH-HHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEe
Q psy13709 95 LYTGRGPS-SDSMHLGHLIPFMFTKW-LQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIF 172 (405)
Q Consensus 95 iytG~~PT-~~slHlGhli~~~~~~~-lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~kt~i~ 172 (405)
+.|=|.|| .|.|||||+-.++ ++| +.+.++..+++-|=|... .....++...++.++..+|++++. ++
T Consensus 12 v~tRFAPsPtG~LHiGharaAl-ln~l~Ar~~gG~~iLRiEDTDp-------~R~~~e~~~~I~~dL~WLGl~wD~--~~ 81 (523)
T PLN03233 12 IVTRFPPEPSGYLHIGHAKAAL-LNDYYARRYKGRLILRFDDTNP-------SKEKAEFEESIIEDLGKIEIKPDS--VS 81 (523)
T ss_pred EEEeeCCCCCCcccHHHHHHHH-HHHHHHHHhCCEEEEEECCCCC-------CccchHHHHHHHHHHHHhCCCCCC--Cc
Confidence 55566655 3599999999985 466 555566666665544211 112234445667777788999875 45
Q ss_pred eCcccc
Q psy13709 173 SDIDFM 178 (405)
Q Consensus 173 ~ns~~~ 178 (405)
.||+.+
T Consensus 82 ~qSdr~ 87 (523)
T PLN03233 82 FTSDYF 87 (523)
T ss_pred cccccH
Confidence 566664
No 50
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.56 E-value=0.09 Score=54.93 Aligned_cols=72 Identities=21% Similarity=0.249 Sum_probs=45.1
Q ss_pred ceee-eecCCCCCCcchhhhHH---HH-HHHHHHhcCC-ccEEEEecCcc-chhcc----CCCHHHH-HHHHHHHHHHHH
Q psy13709 93 FFLY-TGRGPSSDSMHLGHLIP---FM-FTKWLQDVFD-VPLVIQLTDDE-KSLWK----NIKPEEA-KKLAYENAKAII 160 (405)
Q Consensus 93 ~~iy-tG~~PT~~slHlGhli~---~~-~~~~lQ~~~~-~~v~I~i~D~e-~~l~~----~lt~e~i-~~~~~~~~~~~~ 160 (405)
+.+| ||.-+- +..||||.-+ |. +.+||+..|. +..+-=|+|.. |-+.+ ..++.++ .++..++.++.-
T Consensus 23 V~mYvCGpTVY-d~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i~~f~~D~~ 101 (464)
T COG0215 23 VKMYVCGPTVY-DYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAERYIAAFFEDMD 101 (464)
T ss_pred EEEEecCCccC-CccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 6666 455555 6999999554 44 3556777766 44333489854 43332 4566554 445567888888
Q ss_pred HcCCC
Q psy13709 161 ACGFK 165 (405)
Q Consensus 161 A~G~d 165 (405)
|+|+-
T Consensus 102 aL~v~ 106 (464)
T COG0215 102 ALNVL 106 (464)
T ss_pred HhCCC
Confidence 88873
No 51
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=96.51 E-value=0.041 Score=59.29 Aligned_cols=75 Identities=21% Similarity=0.294 Sum_probs=47.3
Q ss_pred eeeecCCC-CCCcchhhhHHHHHHHH-HHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEe
Q psy13709 95 LYTGRGPS-SDSMHLGHLIPFMFTKW-LQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIF 172 (405)
Q Consensus 95 iytG~~PT-~~slHlGhli~~~~~~~-lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~kt~i~ 172 (405)
+.|=|.|| .|.|||||+..++ ++| +.+.++..+++-|=|.. +......+...++.++..+|++.+.- ++
T Consensus 53 v~tRFAPsPtGyLHIGharaAl-lN~l~Ar~~gG~~iLRiEDTD-------p~R~~~e~~d~IleDL~WLGl~wDe~-~~ 123 (601)
T PTZ00402 53 VVTRFPPEASGFLHIGHAKAAL-INSMLADKYKGKLVFRFDDTN-------PSKEKEHFEQAILDDLATLGVSWDVG-PT 123 (601)
T ss_pred eEEeeCCCCCCcccHHHHHHHH-HHHHHHHHhCCEEEEEEcCCC-------CcccCHHHHHHHHHHHHHCCCCCCCc-ee
Confidence 55666655 3599999999985 466 55666666666554411 11123344456778888899998752 34
Q ss_pred eCcccc
Q psy13709 173 SDIDFM 178 (405)
Q Consensus 173 ~ns~~~ 178 (405)
.+|+..
T Consensus 124 ~QSdr~ 129 (601)
T PTZ00402 124 YSSDYM 129 (601)
T ss_pred eccccH
Confidence 466664
No 52
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=96.39 E-value=0.042 Score=57.84 Aligned_cols=49 Identities=16% Similarity=0.089 Sum_probs=37.6
Q ss_pred ceeeecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCC
Q psy13709 240 CLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDL 290 (405)
Q Consensus 240 ~lvp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~ 290 (405)
+.|..|.|...+=..-+-|.+-||.+.|...|.++|.+=+| +||||+..
T Consensus 208 THviRG~d~~~nt~~q~~l~~~lg~~~P~~~H~~li~~~~g--~kLSKr~~ 256 (472)
T COG0008 208 THVLRGEDHLDNTPRQIWLYEALGWPPPVYAHLPLLLNEDG--KKLSKRKG 256 (472)
T ss_pred ceEEechhhccCCHHHHHHHHHcCCCCCcEEEeeeeecCCC--CeecCccC
Confidence 34557777666655556677889999999999999988444 79999976
No 53
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=96.13 E-value=0.042 Score=57.90 Aligned_cols=77 Identities=14% Similarity=0.095 Sum_probs=43.5
Q ss_pred CCCceeeeecCCCCCCcchhhhHHHH---HHHHHHhcCCccEEEE--ecCcc-chhc----cCCCHHHHH-HHHHHHHHH
Q psy13709 90 GKPFFLYTGRGPSSDSMHLGHLIPFM---FTKWLQDVFDVPLVIQ--LTDDE-KSLW----KNIKPEEAK-KLAYENAKA 158 (405)
Q Consensus 90 ~~~~~iytG~~PT~~slHlGhli~~~---~~~~lQ~~~~~~v~I~--i~D~e-~~l~----~~lt~e~i~-~~~~~~~~~ 158 (405)
++.-...||--|.+ .+||||+.+++ .++++++..|..|..+ ++|.. +.+. .++++.++. .+...+.++
T Consensus 20 ~~v~~yvcgptvy~-~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~d 98 (465)
T TIGR00435 20 GKVKMYVCGPTVYD-YCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFED 98 (465)
T ss_pred CcceEEEecCccCC-CcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 44344557877774 89999977643 3344334444444443 33422 2211 246665554 444567777
Q ss_pred HHHcCCCCC
Q psy13709 159 IIACGFKQD 167 (405)
Q Consensus 159 ~~A~G~dp~ 167 (405)
+.++|+.++
T Consensus 99 l~~LgI~~d 107 (465)
T TIGR00435 99 MKALNVLPP 107 (465)
T ss_pred HHHhCCCCC
Confidence 888888643
No 54
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=96.08 E-value=0.04 Score=51.78 Aligned_cols=46 Identities=22% Similarity=0.148 Sum_probs=34.3
Q ss_pred eecCCchHHHHHHHHHhhhhCCC-Cceeee--cccccCCCCCCccCCCCCC
Q psy13709 243 PCAIDQDPYFRLTRDVAPKLGYV-KPALIH--STFFPALQGANTKMSASDL 290 (405)
Q Consensus 243 p~G~DQd~~~~l~rdla~r~~~~-kp~~l~--~~~lp~L~G~~~KMSkS~~ 290 (405)
..|.||..|+...+.+++.+|.. +|...| ..++.+-+| +||||..+
T Consensus 164 v~g~~~~~~~~~~~~~~~~lg~~~~~~~~h~~~~~v~~~~~--~kmS~R~G 212 (212)
T cd00671 164 VVGADHHGHFKRLFAALELLGYDEAKKLEHLLYGMVNLPKE--GKMSTRAG 212 (212)
T ss_pred EECCCHHHHHHHHHHHHHHcCCCCCCCeEEEEEEeEEcCCC--CCCCCCCC
Confidence 57999999999999999999975 333333 356655445 89999753
No 55
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=95.91 E-value=0.091 Score=54.96 Aligned_cols=67 Identities=16% Similarity=0.197 Sum_probs=45.7
Q ss_pred eeeecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCCCCce-eccC---CHHHHHHHhhc
Q psy13709 241 LIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAI-FLTD---TPKQVKNKVNK 309 (405)
Q Consensus 241 lvp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI-~L~D---~p~~i~~KI~k 309 (405)
.|.-|.|...+--.-.-|.+-||.+.|...|.|+|-+-+| +|+||..+..+| ++-+ .|+.|.+-+..
T Consensus 199 HViRG~d~l~~t~~q~~l~~alg~~~P~f~H~pli~~~~g--~KLSKR~g~~sv~~~r~~G~~Peai~n~la~ 269 (445)
T PRK12558 199 HIIRGEDHVTNTAVQIQIFEALGAKPPVFAHLSLLTGADG--KGLSKRLGGLSIRSLREDGIEPMAIASLLAR 269 (445)
T ss_pred EEEechhhhhCCHHHHHHHHHhCCCCCeEEEcccccCCCc--ccccccCCCcCHHHHHHCCCCHHHHHHHHHH
Confidence 3445666555443344566778999999999999999887 899999754332 1111 67778777755
No 56
>PLN02859 glutamine-tRNA ligase
Probab=95.65 E-value=0.21 Score=55.35 Aligned_cols=48 Identities=17% Similarity=0.132 Sum_probs=35.7
Q ss_pred ceeeecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCC
Q psy13709 240 CLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDL 290 (405)
Q Consensus 240 ~lvp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~ 290 (405)
+.+.+|.+...+-..-.-+...+|..+|...+-+ ...++| +||||...
T Consensus 458 THvLRg~E~~~~~~~y~wl~~aLg~~~P~~~~f~-rLn~~~--t~LSKRkl 505 (788)
T PLN02859 458 THSLCTLEFETRRASYYWLLDSLGLYQPYVWEYS-RLNVTN--TVMSKRKL 505 (788)
T ss_pred ceEeechhhhcCCHHHHHHHHHcCCCCCcEEeee-eECCCC--CcccCcCc
Confidence 4566887766655555567788898899888877 457787 89999964
No 57
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=95.50 E-value=0.16 Score=54.65 Aligned_cols=138 Identities=12% Similarity=0.155 Sum_probs=75.1
Q ss_pred CCCCCCCccCCCcccCCCCCcccHHHHHHhhCCCCCCHHHHHHHHHHhhhhHHHHHHcCcccccCCHHHHHHHHhcCCCc
Q psy13709 14 TVDGEDDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSHRDMHSILNLYEQGKPF 93 (405)
Q Consensus 14 ~~~~~~~~v~pw~~~~~~~~~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~~~l~~RGl~~~~~d~~~ll~~~~~~~~~ 93 (405)
+....+.+...|++. .-..+.+++..... .+++.+++++.. +. .+ ....+...+.+ +...+.-
T Consensus 30 ~~~~p~~~~~~~~~~------~~~~~~v~~v~~~~-~~~~~~~~~~~~---~~--~~----~~~~~~~~~~~-L~~a~~~ 92 (560)
T TIGR00463 30 MSNNPELRKKAKEVL------EEVEPIVEEVNDLS-SEELKELKKSLG---VD--KK----KKEKKAKGLIE-LPGAKMG 92 (560)
T ss_pred hccCCccCcchhhHH------HHHHHHHHHHhhcC-HHHHHHHHhhhc---ch--hh----hccccccCCCC-CCCCcCC
Confidence 355667889999875 33677777655433 234444444421 10 00 01111111111 1111112
Q ss_pred eeeeecCCC-CCCcchhhhHHHHHHHH-HHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q psy13709 94 FLYTGRGPS-SDSMHLGHLIPFMFTKW-LQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFI 171 (405)
Q Consensus 94 ~iytG~~PT-~~slHlGhli~~~~~~~-lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~kt~i 171 (405)
.+.|=|.|| .|.|||||+..+++ +| +.+.++..+++-|-|... ......+...+..++..+|++++. +
T Consensus 93 ~vvtRFaPsPtG~LHiGharaall-n~~~Ar~~~G~~iLRidDTDp-------~R~~~e~~~~I~edL~wLGi~~d~--~ 162 (560)
T TIGR00463 93 EVVMRFAPNPSGPLHIGHARAAIL-NQYFAKKYKGKLIIRFDDTDP-------RRVKPEAYDMILEDLDWLGVKGDE--V 162 (560)
T ss_pred eeEEEeCCCCCCCccHHHHHHHHH-HHHHHHhcCCEEEEEeCcCCc-------ccccHHHHHHHHHHHHHcCCCCCc--c
Confidence 356666665 46999999999864 55 666667777776665211 111223444667778888999874 5
Q ss_pred eeCcccc
Q psy13709 172 FSDIDFM 178 (405)
Q Consensus 172 ~~ns~~~ 178 (405)
+.+|+.+
T Consensus 163 ~~qSd~~ 169 (560)
T TIGR00463 163 VYQSDRI 169 (560)
T ss_pred ccccccH
Confidence 5666765
No 58
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.22 E-value=0.09 Score=54.21 Aligned_cols=101 Identities=14% Similarity=0.078 Sum_probs=69.1
Q ss_pred ccCCCCCCCCceeccCCHHHHHHHhhcccccCCccc-----hhhhh---hcCCCCchHHHHHHHHh------ccC--Chh
Q psy13709 283 TKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQAT-----VEEHR---ELGGNCDVDIAYQYLTF------FLE--DDD 346 (405)
Q Consensus 283 ~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~~~~t-----~e~~~---~~ggn~~v~~~~~~l~~------f~~--~d~ 346 (405)
.+||+|+++|++.+.+.+..|..|+++ +||..... +++-. ..+.++-.+ =.+|.+ |-+ -.+
T Consensus 232 a~~~~s~~~Sp~~~yq~~~~i~D~~~~-~~~~~~t~l~~~eI~~i~~~~~~~~~~r~~--k~~LA~e~~~~~hG~~~a~~ 308 (401)
T COG0162 232 AVWLDSEKTSPYDFYQYWMNIEDADVK-RFLKLLTFLSLEEIEEIEKYVLKGPEPREA--KKLLAKEVTKLVHGEEAAEA 308 (401)
T ss_pred ceEccCCCCCcHhhhhcHhcCcHHHHH-HHHHHhCcCChHHHHHHHHHhhcCCChHHH--HHHHHHHhhHhhcCHHHHHH
Confidence 699999999999999999999999999 99976511 11111 123333211 111111 111 113
Q ss_pred hHHHHHHHHhcC---CCCHHHHHH-----HHHHHHHHhhHHHHHHHHH
Q psy13709 347 KLEQIRKNYTSG---ALLTGELKK-----ILIDTITPIVTQHQEAMKG 386 (405)
Q Consensus 347 e~eei~~~~~~G---~l~~~elK~-----~La~~i~~~l~~~qe~r~~ 386 (405)
..++.+..|.+| .+++.++|. .++..+...+.|.+.....
T Consensus 309 a~~~~~~~F~~g~~~~l~~~dlk~~~~~~~~~~lv~~~L~psr~earr 356 (401)
T COG0162 309 AEEEFEKLFSEGLPENLPPADLKQKLEDGLVDLLVDAGLAPSRSEARR 356 (401)
T ss_pred HHHHHHHHHhcCCcccCCHHHHhhhhHHHHHHHHHHhCCcccHHHHHh
Confidence 467788889998 999999999 8888888888887766443
No 59
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=93.30 E-value=0.087 Score=52.30 Aligned_cols=56 Identities=23% Similarity=0.049 Sum_probs=35.8
Q ss_pred ceeeecCCch-HHHHHHHHHhhhhCCC-Cc-eeeecccccCCCCCCccCCCCCCCCceeccC
Q psy13709 240 CLIPCAIDQD-PYFRLTRDVAPKLGYV-KP-ALIHSTFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 240 ~lvp~G~DQd-~~~~l~rdla~r~~~~-kp-~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
++..+|.||. +|+....-...-++.. .| .++.+.++..-.| +|||||.+| .|++.|
T Consensus 228 di~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g--~KmSKS~gn-~v~~~d 286 (312)
T cd00668 228 DWHLIGKDILRGWANFWITMLVALFGEIPPKNLLVHGFVLDEGG--QKMSKSKGN-VIDPSD 286 (312)
T ss_pred eEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEECcEEEcCCC--ccccccCCC-cCCHHH
Confidence 4556899999 7765544444445533 33 2334566654444 899999998 888755
No 60
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=93.21 E-value=0.59 Score=50.13 Aligned_cols=87 Identities=16% Similarity=0.227 Sum_probs=51.3
Q ss_pred HHHHHhcCCCceeeeecCCC-CCCcchhhhHHHHHHHH-HHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHH
Q psy13709 83 ILNLYEQGKPFFLYTGRGPS-SDSMHLGHLIPFMFTKW-LQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAII 160 (405)
Q Consensus 83 ll~~~~~~~~~~iytG~~PT-~~slHlGhli~~~~~~~-lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~ 160 (405)
+.+.+++|+--.+.|=|.|| .|.|||||+-.+++ +| +.+..+..+++-|=|... .....+....++.++.
T Consensus 18 ~~~dl~~~~~~~v~tRFaPsPtG~LHiG~ar~al~-n~~~Ar~~~G~~iLRieDTd~-------~r~~~e~~~~I~~dL~ 89 (554)
T PRK05347 18 IDEDLASGKHTRVHTRFPPEPNGYLHIGHAKSICL-NFGLAQDYGGKCNLRFDDTNP-------EKEDQEYVDSIKEDVR 89 (554)
T ss_pred HHhHHhcCCcCceEEEeCCCCCCcccHHHHHHHHH-HHHHHHHhCCEEEEEECCCCC-------CcCChHHHHHHHHHHH
Confidence 44455556432366667665 35999999999864 55 556666666666544211 0122233445667777
Q ss_pred HcCCCCCceEEeeCcccc
Q psy13709 161 ACGFKQDSTFIFSDIDFM 178 (405)
Q Consensus 161 A~G~dp~kt~i~~ns~~~ 178 (405)
.+|++++.- ++.+|+.+
T Consensus 90 wLGi~~d~~-~~~qS~r~ 106 (554)
T PRK05347 90 WLGFDWSGE-LRYASDYF 106 (554)
T ss_pred HcCCCCCCC-ceeeecCH
Confidence 889998432 34455654
No 61
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=92.29 E-value=0.86 Score=50.88 Aligned_cols=87 Identities=15% Similarity=0.255 Sum_probs=51.8
Q ss_pred HHHHHhcCCCceeeeecCCC-CCCcchhhhHHHHHHHH-HHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHH
Q psy13709 83 ILNLYEQGKPFFLYTGRGPS-SDSMHLGHLIPFMFTKW-LQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAII 160 (405)
Q Consensus 83 ll~~~~~~~~~~iytG~~PT-~~slHlGhli~~~~~~~-lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~ 160 (405)
+.+.++.|..-.+.|=|.|| .|.|||||+-.+++ +| +.+.+|..+++-|=|... .....++...+..++.
T Consensus 20 ~~~~l~~g~~~~v~tRFaPsPtG~lHiGhar~all-n~~~A~~~~G~~~LR~eDTd~-------~r~~~e~~~~I~~dl~ 91 (771)
T PRK14703 20 IEEDLEAGRYPRVVTRFPPEPNGYLHIGHAKSILL-NFGIARDYGGRCHLRMDDTNP-------ETEDTEYVEAIKDDVR 91 (771)
T ss_pred HHHHHhcCCCCceEEEeCcCCCCcccHHHHHHHHH-HHHHHHHhCCEEEEEeCCCCC-------CcCChHHHHHHHHHHH
Confidence 34455555433466777665 46999999999864 55 666666666665544211 0122233345667777
Q ss_pred HcCCCCCceEEeeCcccc
Q psy13709 161 ACGFKQDSTFIFSDIDFM 178 (405)
Q Consensus 161 A~G~dp~kt~i~~ns~~~ 178 (405)
.+|++++.. ++.+|+..
T Consensus 92 wLG~~wd~~-~~~qS~~~ 108 (771)
T PRK14703 92 WLGFDWGEH-LYYASDYF 108 (771)
T ss_pred HcCCCCCCC-ceEeecCH
Confidence 789997643 34455654
No 62
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=92.08 E-value=0.17 Score=51.04 Aligned_cols=55 Identities=27% Similarity=0.188 Sum_probs=33.5
Q ss_pred ceeeecCCchH-HH--HHHHHHhhhhCCCCc-eeeecccccCCCCCCccCCCCCCCCceeccC
Q psy13709 240 CLIPCAIDQDP-YF--RLTRDVAPKLGYVKP-ALIHSTFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 240 ~lvp~G~DQd~-~~--~l~rdla~r~~~~kp-~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
++...|.|+-. |+ .+-.-++ -.+...+ .++.+.++...+| +|||||.+| .|++.|
T Consensus 254 d~~~~GkDii~~wf~~~~~~~~~-~~~~~p~~~~~~hg~~~~~~g--~KmSKS~gn-~i~~~~ 312 (338)
T cd00818 254 DFILEGSDQTRGWFYSLLLLSTA-LFGKAPYKNVIVHGFVLDEDG--RKMSKSLGN-YVDPQE 312 (338)
T ss_pred eEEeecchHHhHHHHHHHHHHHH-hcCCCccceEEEEeeEECCCC--CCCCCCCCC-cCCHHH
Confidence 35567999975 33 2222222 1233332 3445777766677 899999998 888754
No 63
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=91.02 E-value=0.68 Score=49.76 Aligned_cols=74 Identities=15% Similarity=0.197 Sum_probs=46.6
Q ss_pred eeeecCCC-CCCcchhhhHHHHHHHH-HHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEe
Q psy13709 95 LYTGRGPS-SDSMHLGHLIPFMFTKW-LQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIF 172 (405)
Q Consensus 95 iytG~~PT-~~slHlGhli~~~~~~~-lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~kt~i~ 172 (405)
+.|=|.|| .|.|||||+-.+++ +| +.+..+..+++-|=|.. .......+...+..++..+|++++.. +
T Consensus 52 v~tRFaPsPtG~LHiGharaall-n~~~Ar~~gG~~iLRiEDTD-------p~r~~~e~~~~I~~dL~wLGi~~D~~--~ 121 (574)
T PTZ00437 52 PYFRFPPEPNGFLHIGHAKSMNL-NFGSARAHGGKCYLRYDDTN-------PETEEQVYIDAIMEMVKWMGWKPDWV--T 121 (574)
T ss_pred EEEEeCCCCCCcccHHHHHHHHH-HHHHHHHhCCEEEEEECCCC-------ccccChHHHHHHHHHHHHcCCCCCCC--C
Confidence 55666654 35999999999864 55 66666666666654421 11122344446677777889998764 3
Q ss_pred eCcccc
Q psy13709 173 SDIDFM 178 (405)
Q Consensus 173 ~ns~~~ 178 (405)
.+|++.
T Consensus 122 ~qS~y~ 127 (574)
T PTZ00437 122 FSSDYF 127 (574)
T ss_pred cCchhH
Confidence 556665
No 64
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=90.21 E-value=1 Score=48.15 Aligned_cols=69 Identities=16% Similarity=0.322 Sum_probs=42.2
Q ss_pred CCCCCCcchhhhHHHHHHHH-HHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEeeCcccc
Q psy13709 100 GPSSDSMHLGHLIPFMFTKW-LQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFM 178 (405)
Q Consensus 100 ~PT~~slHlGhli~~~~~~~-lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~kt~i~~ns~~~ 178 (405)
.|| |.|||||+-.+++ +| +.+.++..+++-|=|... .....++...+..++..+|++++.. ++.||+..
T Consensus 8 sPt-G~LHiG~ar~al~-n~~~A~~~~G~~iLRieDTd~-------~r~~~e~~~~I~~dL~wLG~~~d~~-~~~qS~~~ 77 (522)
T TIGR00440 8 EPN-GYLHIGHAKSICL-NFGYAKYYNGTCNLRFDDTNP-------VKEDPEYVESIKRDVEWLGFKWEGK-IRYSSDYF 77 (522)
T ss_pred CCC-CcccHHHHHHHHH-HHHHHHHhCCEEEEEEcCCCc-------ccCChHHHHHHHHHHHHcCCCCCCC-ceEccccH
Confidence 467 5999999999864 55 666667767666544211 1112233345667777889998432 34466664
No 65
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=89.71 E-value=0.29 Score=50.20 Aligned_cols=56 Identities=23% Similarity=0.068 Sum_probs=34.7
Q ss_pred ceeeecCCchHHHHHH-HHHhhhhCCCCc--eeeecccccCCCCCCccCCCCCCCCceeccC
Q psy13709 240 CLIPCAIDQDPYFRLT-RDVAPKLGYVKP--ALIHSTFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 240 ~lvp~G~DQd~~~~l~-rdla~r~~~~kp--~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
++..+|.||..+.-.. .-.+..+....| .++.+.++..+.| +|||||.+| .|++.|
T Consensus 298 d~~~~G~D~~~~h~~~~l~~~~~~~g~~p~~~v~~hg~v~~~~g--~KMSKS~Gn-~v~~~d 356 (382)
T cd00817 298 SLLVTGHDIIFFWVARMIMRGLKLTGKLPFKEVYLHGLVRDEDG--RKMSKSLGN-VIDPLD 356 (382)
T ss_pred CeeeeecCcCchHHHHHHHHHHHhhCCCchHHeEeeeeEECCCC--CCccccCCC-CCCHHH
Confidence 4566899997654322 122222323334 4455777766777 899999998 887754
No 66
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=89.59 E-value=1 Score=49.65 Aligned_cols=76 Identities=20% Similarity=0.349 Sum_probs=45.4
Q ss_pred CCceeeeec-CCCCCCcchhhhHHHH---HHHHHHhcCCccEEEEecCcc---chhc----cCCCHHH-HHHHHHHHHHH
Q psy13709 91 KPFFLYTGR-GPSSDSMHLGHLIPFM---FTKWLQDVFDVPLVIQLTDDE---KSLW----KNIKPEE-AKKLAYENAKA 158 (405)
Q Consensus 91 ~~~~iytG~-~PT~~slHlGhli~~~---~~~~lQ~~~~~~v~I~i~D~e---~~l~----~~lt~e~-i~~~~~~~~~~ 158 (405)
++++|-|++ -|+ |.+||||+.+++ ++.++++.-|..|..+.|+++ +... .++++.+ +.+++..+.+.
T Consensus 2 ~~~~itt~~py~n-g~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~ 80 (673)
T PRK00133 2 RKILVTCALPYAN-GPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRD 80 (673)
T ss_pred CCEEEeCCCCCCC-CcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 357788888 577 599999988754 344455544555655555443 1111 1455543 45555666777
Q ss_pred HHHcCCCCC
Q psy13709 159 IIACGFKQD 167 (405)
Q Consensus 159 ~~A~G~dp~ 167 (405)
+.++|++.+
T Consensus 81 ~~~l~i~~d 89 (673)
T PRK00133 81 FAGFGISFD 89 (673)
T ss_pred HHHhCCCCC
Confidence 777777654
No 67
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=89.42 E-value=0.3 Score=52.73 Aligned_cols=58 Identities=22% Similarity=0.167 Sum_probs=42.0
Q ss_pred eecCCchHHHHHHHHHhhhhCCCCce-eeecccccCCCCCCccCCCCCCCCceeccCCHHHHH
Q psy13709 243 PCAIDQDPYFRLTRDVAPKLGYVKPA-LIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVK 304 (405)
Q Consensus 243 p~G~DQd~~~~l~rdla~r~~~~kp~-~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~ 304 (405)
-+|.||..|+.....++..+|++.|. +.+..+-.- .+ .|||||.+| .|.+.|=.+++.
T Consensus 333 V~g~~q~~h~~~v~~~l~~lG~~~~~~l~h~~~~~V-~~--~kmSkr~Gn-~V~~~dll~~~~ 391 (566)
T TIGR00456 333 VWGSDHHLHIAQFFAILEKLGFYKKKELIHLNFGMV-PL--GSMKTRRGN-VISLDNLLDEAS 391 (566)
T ss_pred EecCcHHHHHHHHHHHHHHcCCCCCCceEEEEEEEE-EC--CCCCccCCc-eeeHHHHHHHHH
Confidence 37999999999999999999987663 334333221 23 599999987 999986444433
No 68
>PLN02907 glutamate-tRNA ligase
Probab=89.22 E-value=1.1 Score=49.78 Aligned_cols=74 Identities=20% Similarity=0.328 Sum_probs=47.1
Q ss_pred eeeecCCC-CCCcchhhhHHHHHHHH-HHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEe
Q psy13709 95 LYTGRGPS-SDSMHLGHLIPFMFTKW-LQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIF 172 (405)
Q Consensus 95 iytG~~PT-~~slHlGhli~~~~~~~-lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~kt~i~ 172 (405)
+.|=|.|| .|-|||||+-.++ ++| +.+.+|..+++-|=|... .....+....+..++..+|+++++. +
T Consensus 214 v~tRFaPsPtG~LHiG~ar~al-~n~~~Ar~~~G~~iLR~eDTdp-------~r~~~e~~~~I~~dl~wLG~~~d~~--~ 283 (722)
T PLN02907 214 VCTRFPPEPSGYLHIGHAKAAL-LNQYFARRYKGKLIVRFDDTNP-------SKESDEFVENILKDIETLGIKYDAV--T 283 (722)
T ss_pred eEEeeCCCCCCcccHHHHHHHH-HHHHHHHHhCCEEEEEecCCCC-------CcCChHHHHHHHHHHHHcCCCCCCc--c
Confidence 66667665 4699999999986 466 666667767766544211 1112233345667777789998864 5
Q ss_pred eCcccc
Q psy13709 173 SDIDFM 178 (405)
Q Consensus 173 ~ns~~~ 178 (405)
.+|++.
T Consensus 284 ~qS~r~ 289 (722)
T PLN02907 284 YTSDYF 289 (722)
T ss_pred cccccH
Confidence 666765
No 69
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=88.84 E-value=0.25 Score=49.25 Aligned_cols=54 Identities=24% Similarity=0.295 Sum_probs=33.1
Q ss_pred eeeecCCchHHH----HHHHHHhhhhCC---CCce-eeecccccCCCCCCccCCCCCCCCceeccC
Q psy13709 241 LIPCAIDQDPYF----RLTRDVAPKLGY---VKPA-LIHSTFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 241 lvp~G~DQd~~~----~l~rdla~r~~~---~kp~-~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
+-.+|.||-++. .+-..++...|+ ..|. ++.+-++. +.| +|||||.+| +|++.|
T Consensus 227 i~v~G~D~i~~h~~~~~~~~~~l~~~g~~~~~~~~~~~~~g~v~-~~g--~KmSkS~Gn-~v~~~d 288 (314)
T cd00812 227 IYIGGKEHAPNHLLYSRFNHKALFDEGLVTDEPPKGLIVQGMVL-LEG--EKMSKSKGN-VVTPDE 288 (314)
T ss_pred eeecchhHHHHHHHHHHHHHHHHcCcccccccCcHHheecceEe-cCc--cccCCcCCC-CCCHHH
Confidence 334789996544 333344444553 3342 33445554 566 899999988 998865
No 70
>KOG1147|consensus
Probab=88.37 E-value=2.2 Score=45.43 Aligned_cols=68 Identities=19% Similarity=0.345 Sum_probs=43.7
Q ss_pred eeeec--CCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q psy13709 95 LYTGR--GPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTF 170 (405)
Q Consensus 95 iytG~--~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~kt~ 170 (405)
+.+-| +|| |.|||||.-..++-.|+|.+|+..+++-.-| +- -.-..++.+. .+..++--+|+.|++..
T Consensus 201 Vv~RFPPEpS-GyLHIGHAKAALLNqYfa~~~~G~LIvRFDD-TN---PaKE~~eFe~---~IleDl~~LgIkpd~~T 270 (712)
T KOG1147|consen 201 VVTRFPPEPS-GYLHIGHAKAALLNQYFAQAYQGKLIVRFDD-TN---PAKENEEFED---VILEDLSLLGIKPDRVT 270 (712)
T ss_pred eEEecCCCCC-ceeehhhHHHHHHHHHHHHhcCceEEEEecC-CC---cchhhHHHHH---HHHHHHHHhCcCcceee
Confidence 44444 566 5999999999887778999999888775433 10 0011233333 45566666799997643
No 71
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=88.04 E-value=3.9 Score=46.72 Aligned_cols=54 Identities=22% Similarity=0.167 Sum_probs=30.7
Q ss_pred ceeeecCCchHH-HHHHHHHhhhhCC---CCc-eeeecccccCCCCCCccCCCCCCCCceeccC
Q psy13709 240 CLIPCAIDQDPY-FRLTRDVAPKLGY---VKP-ALIHSTFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 240 ~lvp~G~DQd~~-~~l~rdla~r~~~---~kp-~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
++...|.||-.+ .-..+ +.....+ +-| .++.+.++.. +| +|||||.+| .|++.+
T Consensus 532 D~~~~GkDii~~Hl~~~~-~~~~a~~~~~~~Pk~v~~hG~vl~-~G--~KMSKS~GN-vVdp~e 590 (897)
T PRK12300 532 DWRHSGKDLIPNHLTFFI-FNHVAIFPEEKWPRGIVVNGFVLL-EG--KKMSKSKGN-VIPLRK 590 (897)
T ss_pred eEEEeeeccCccHHHHHH-HHHHHhcCCCccCcEEEEcceEEE-CC--ccccCcCCC-CCCHHH
Confidence 455689999653 11111 1111111 223 4455666655 66 899999998 776544
No 72
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=87.58 E-value=0.5 Score=53.54 Aligned_cols=56 Identities=23% Similarity=0.176 Sum_probs=33.9
Q ss_pred ceeeecCCchH-HHHHHHHHhhh-hCCCCc-eeeecccccCCCCCCccCCCCCCCCceeccC
Q psy13709 240 CLIPCAIDQDP-YFRLTRDVAPK-LGYVKP-ALIHSTFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 240 ~lvp~G~DQd~-~~~l~rdla~r-~~~~kp-~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
++...|.||-. |+......+-- .+..+| .++.+.++...+| +|||||.+| .|+..|
T Consensus 566 d~~i~G~Di~r~Wf~~~~~~~~~~~~~~P~k~v~~hG~vl~~~G--~KMSKSkGN-vI~p~d 624 (861)
T TIGR00392 566 DFILEGSDQTRGWFYSSLAIGTALFGQAPYKNVITHGFTLDEKG--RKMSKSLGN-VVDPLK 624 (861)
T ss_pred eEEEEecchhccHHHHHHHHHHHHcCCCChHhhEecceEECCCC--CCcCCCCCC-CCCHHH
Confidence 46668999965 33332222222 244333 2344666666666 899999998 887655
No 73
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=87.44 E-value=0.79 Score=51.99 Aligned_cols=60 Identities=25% Similarity=0.221 Sum_probs=37.3
Q ss_pred ceeeecCCc-hHHHHHHHHHhhhhCCCCc--eeeecccccCCCCCCccCCCCCCCCceeccCCHHHHHHH
Q psy13709 240 CLIPCAIDQ-DPYFRLTRDVAPKLGYVKP--ALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNK 306 (405)
Q Consensus 240 ~lvp~G~DQ-d~~~~l~rdla~r~~~~kp--~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~K 306 (405)
+++.=|+|| ++||...--+.--+....| .++++.|+..=+| .|||||.+| .| +|++|-+|
T Consensus 557 D~~lEGsDQ~RGWF~Ssl~~s~a~~~~aPYk~vltHGfvlDe~G--rKMSKSlGN-~v----~P~~V~~~ 619 (933)
T COG0060 557 DFYLEGSDQTRGWFYSSLLTSTALFGRAPYKNVLTHGFVLDEKG--RKMSKSLGN-VV----DPQDVIDK 619 (933)
T ss_pred cEEEEeccccchhHHHHHHHHHHHcCCchHHHHhhcccEECCCC--CCccccCCC-cC----CHHHHHHh
Confidence 577779999 4666433222222222344 3566777776676 999999998 54 46666544
No 74
>KOG0432|consensus
Probab=87.07 E-value=0.89 Score=50.72 Aligned_cols=47 Identities=26% Similarity=0.205 Sum_probs=29.5
Q ss_pred ecCCchHHHHHHHH--HhhhhCCCCce--eeecccccCCCCCCccCCCCCCCCce
Q psy13709 244 CAIDQDPYFRLTRD--VAPKLGYVKPA--LIHSTFFPALQGANTKMSASDLNSAI 294 (405)
Q Consensus 244 ~G~DQd~~~~l~rd--la~r~~~~kp~--~l~~~~lp~L~G~~~KMSkS~~nsaI 294 (405)
-|.|=-.+. .||= +.-++...-|. ++.++++-.-+| .|||||.+| .|
T Consensus 552 TG~DILfFW-VaRMvmLg~kLtG~lPF~~V~LH~mVRDa~G--RKMSKSLGN-VI 602 (995)
T KOG0432|consen 552 TGHDILFFW-VARMVMLGLKLTGELPFKEVLLHGLVRDAHG--RKMSKSLGN-VI 602 (995)
T ss_pred cCchHHHHH-HHHHHHhhhhhcCCCCchheeechhhccccc--cccchhhcc-cc
Confidence 465544443 2332 22334334443 567899999998 899999998 65
No 75
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=86.97 E-value=0.62 Score=53.47 Aligned_cols=54 Identities=26% Similarity=0.226 Sum_probs=34.0
Q ss_pred CceeeecCCchH-HHHHHHHHhhhhC--CCCc--eeeecccccCCCCCCccCCCCCCCCceecc
Q psy13709 239 PCLIPCAIDQDP-YFRLTRDVAPKLG--YVKP--ALIHSTFFPALQGANTKMSASDLNSAIFLT 297 (405)
Q Consensus 239 ~~lvp~G~DQd~-~~~l~rdla~r~~--~~kp--~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~ 297 (405)
.++...|.||.. ||.-. ++.... ...| .++.+.++...+| +|||||.+| .|...
T Consensus 584 aD~~~eG~Di~rgWF~s~--ll~s~~~~~~~P~k~V~~HG~vld~~G--~KMSKSlGN-vIdP~ 642 (961)
T PRK13804 584 ADLYLEGSDQHRGWFNSS--LLESCGTRGRAPYKAVLTHGFTLDEKG--EKMSKSLGN-TVSPQ 642 (961)
T ss_pred ceEEEEEcccccHHHHHH--HHHHHHhcCCCChhhEEEeccEECCCC--CCccCCCCC-cCCHH
Confidence 345668999975 44221 222221 2233 4566788887788 899999998 76543
No 76
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=86.84 E-value=0.64 Score=53.05 Aligned_cols=53 Identities=30% Similarity=0.204 Sum_probs=34.2
Q ss_pred ceeeecCCchH-HH--HHHHHHhhhhCCCCc-eeeecccccCCCCCCccCCCCCCCCceec
Q psy13709 240 CLIPCAIDQDP-YF--RLTRDVAPKLGYVKP-ALIHSTFFPALQGANTKMSASDLNSAIFL 296 (405)
Q Consensus 240 ~lvp~G~DQd~-~~--~l~rdla~r~~~~kp-~~l~~~~lp~L~G~~~KMSkS~~nsaI~L 296 (405)
++...|.||-. || .+-..++- .|.+++ .++.+.++...+| +|||||.+| .|..
T Consensus 547 Dl~~~G~Di~r~Wf~~~l~~~~~~-~g~~P~k~vl~HG~vld~~G--~KMSKSlGN-vIdP 603 (912)
T PRK05743 547 DLYLEGSDQHRGWFQSSLLTSVAT-RGKAPYKQVLTHGFTVDGKG--RKMSKSLGN-VIDP 603 (912)
T ss_pred eEEEecccccchHHHHHHHHHHHh-cCCCccceeEEeeeEECCCC--CCCCCCCCC-cCCH
Confidence 45668999964 43 33334443 454444 3445778877787 899999998 6643
No 77
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=86.77 E-value=1.4 Score=47.37 Aligned_cols=73 Identities=22% Similarity=0.241 Sum_probs=40.0
Q ss_pred eeeecCCC-CCCcchhhhHHH----HHHHHHHhcCCccEEEEec-Cccc--hh----ccCCCHHHH-HHHHHHHHHHHHH
Q psy13709 95 LYTGRGPS-SDSMHLGHLIPF----MFTKWLQDVFDVPLVIQLT-DDEK--SL----WKNIKPEEA-KKLAYENAKAIIA 161 (405)
Q Consensus 95 iytG~~PT-~~slHlGhli~~----~~~~~lQ~~~~~~v~I~i~-D~e~--~l----~~~lt~e~i-~~~~~~~~~~~~A 161 (405)
+.|+-=|+ .|.+||||+.+. .++.++++.-|..|..+.| |++. .. ..+.+..++ .+++....+++.+
T Consensus 6 ~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 85 (556)
T PRK12268 6 LITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDFKK 85 (556)
T ss_pred EEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 34444455 369999998765 2334444444555555433 4321 11 114555443 5556666777778
Q ss_pred cCCCCC
Q psy13709 162 CGFKQD 167 (405)
Q Consensus 162 ~G~dp~ 167 (405)
+|++++
T Consensus 86 l~i~~d 91 (556)
T PRK12268 86 LGISYD 91 (556)
T ss_pred cCCcCC
Confidence 887654
No 78
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=86.45 E-value=0.44 Score=50.38 Aligned_cols=53 Identities=26% Similarity=0.186 Sum_probs=34.5
Q ss_pred ceeeecCCchHHHHH---HHHHhhhhCCCCc-eeeecccccCCCCCCccCCCCCCCCceeccC
Q psy13709 240 CLIPCAIDQDPYFRL---TRDVAPKLGYVKP-ALIHSTFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 240 ~lvp~G~DQd~~~~l---~rdla~r~~~~kp-~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
++...|.||-.+... +.-.+ .+.+.| ..+++.++. ++| +|||||.+| .|++.|
T Consensus 256 D~~~~G~D~~~~h~~~~~a~~~a--~~~~~p~~~~~~g~v~-~~G--~KMSKS~GN-~i~~~d 312 (511)
T PRK11893 256 DVHLIGKDILRFHAVYWPAFLMA--AGLPLPKRVFAHGFLT-LDG--EKMSKSLGN-VIDPFD 312 (511)
T ss_pred cceEecccccccchhHHHHHHHh--CCCCCCCEEEeeccEE-ECC--eeecccCCc-EEcHHH
Confidence 345579999885322 22222 244555 455566775 577 899999998 998865
No 79
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=85.90 E-value=1.9 Score=44.48 Aligned_cols=50 Identities=30% Similarity=0.292 Sum_probs=29.5
Q ss_pred eecCCchHHHHHH---HHHhhhhCCCCceeee-cccccCCCCCCccCCCCCCCCceeccC
Q psy13709 243 PCAIDQDPYFRLT---RDVAPKLGYVKPALIH-STFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 243 p~G~DQd~~~~l~---rdla~r~~~~kp~~l~-~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
.+|.|--++..+- --+| .+.+.|..+. +-++. ++| +|||||.+| +||..|
T Consensus 287 ~iGkDi~~fH~i~~pa~l~a--~~~~lP~~i~~~~~~~-~~g--~K~SkS~gn-~i~~~~ 340 (391)
T PF09334_consen 287 FIGKDIIRFHAIYWPAMLLA--AGLPLPRRIVVHGFLT-LDG--EKMSKSRGN-VIWPDD 340 (391)
T ss_dssp EEEGGGHHHHHTHHHHHHHH--CTB---SEEEEE--EE-ETT--CCEETTTTE-SSBHHH
T ss_pred EEccchhHHHHHHhHHHHhc--ccCCCCCEEEeeeeEE-ECC--eeccccCCc-ccCHHH
Confidence 3688887776432 2223 5666665443 44544 677 899999988 998754
No 80
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=85.75 E-value=2.4 Score=34.99 Aligned_cols=57 Identities=21% Similarity=0.282 Sum_probs=31.2
Q ss_pred CCcchhhhHHHHHHHHHHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHHHcCCC
Q psy13709 104 DSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFK 165 (405)
Q Consensus 104 ~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~G~d 165 (405)
+-+|+||+..+....-++ + .+++.++|......+ .....++++.....+.++-+|.+
T Consensus 9 dp~H~GH~~l~~~a~~~~---d-~~i~~i~~~~~~~~~-~~~~~~~~R~~~l~~~~~~~G~~ 65 (105)
T cd02156 9 GYLHIGHAKLICRAKGIA---D-QCVVRIDDNPPVKVW-QDPHELEERKESIEEDISVCGED 65 (105)
T ss_pred CCCCHHHHHHHHHHHHhC---C-cEEEEEcCCCccccc-CChHHHHHHHHHHHHHHHHHHhh
Confidence 589999999854333333 3 466777776643211 23455555544434434445543
No 81
>PLN02381 valyl-tRNA synthetase
Probab=85.74 E-value=0.8 Score=53.12 Aligned_cols=53 Identities=25% Similarity=0.174 Sum_probs=33.9
Q ss_pred ceeeecCCchHHHHHHHHHhhh--hCCCCce--eeecccccCCCCCCccCCCCCCCCceec
Q psy13709 240 CLIPCAIDQDPYFRLTRDVAPK--LGYVKPA--LIHSTFFPALQGANTKMSASDLNSAIFL 296 (405)
Q Consensus 240 ~lvp~G~DQd~~~~l~rdla~r--~~~~kp~--~l~~~~lp~L~G~~~KMSkS~~nsaI~L 296 (405)
+++..|.||..+. .+|=++.. +....|+ ++.+.++-.-+| .|||||.+| .|..
T Consensus 610 d~~~~G~Dii~~W-~~rmi~~~~~~~~~~PFk~v~~hG~V~D~~G--~KMSKS~GN-vIdP 666 (1066)
T PLN02381 610 SVLETGHDILFFW-VARMVMMGMQLGGDVPFRKVYLHPMIRDAHG--RKMSKSLGN-VIDP 666 (1066)
T ss_pred eeeeecchhhhhH-HHHHHHHHHHhCCCCchHHheecceEECCCC--CCCCCCCCC-CCCH
Confidence 4555788887543 23323322 3334553 556888888888 899999998 6643
No 82
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=85.55 E-value=5 Score=45.53 Aligned_cols=94 Identities=14% Similarity=0.171 Sum_probs=54.6
Q ss_pred HHHHHHcCcccccCCHHHHHHHHhcCCCceeeeecCCCCCCcchhhhHHHH---HHHHHHhcCCccEEEEec-Cccc---
Q psy13709 65 VHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFM---FTKWLQDVFDVPLVIQLT-DDEK--- 137 (405)
Q Consensus 65 ~~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~PT~~slHlGhli~~~---~~~~lQ~~~~~~v~I~i~-D~e~--- 137 (405)
.....+.+++....+ ..++++++..|+=...|.||+||+.... +..++++.-|..|....| |.+.
T Consensus 11 q~~W~~~~~f~~~~~--------~~k~k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpi 82 (842)
T TIGR00396 11 QQKWKENKVFKFTDD--------SNKPKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPA 82 (842)
T ss_pred HHHHHhcCCcccCCC--------CCCCCEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHH
Confidence 335566677654322 2345578888754335689999988753 344566655655555555 3321
Q ss_pred --hh-ccCCCH-HHHHHHHHHHHHHHHHcCCCC
Q psy13709 138 --SL-WKNIKP-EEAKKLAYENAKAIIACGFKQ 166 (405)
Q Consensus 138 --~l-~~~lt~-e~i~~~~~~~~~~~~A~G~dp 166 (405)
.. ..+++. +-+.++..++.+++.++|+..
T Consensus 83 e~~a~~~g~~p~~~~~~~~~~~~~~~~~lG~~~ 115 (842)
T TIGR00396 83 ENAAIKRGIHPAKWTYENIANMKKQLQALGFSY 115 (842)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcc
Confidence 11 123443 445556667777788888754
No 83
>PLN02224 methionine-tRNA ligase
Probab=85.37 E-value=1.8 Score=47.29 Aligned_cols=93 Identities=14% Similarity=0.170 Sum_probs=52.0
Q ss_pred cCcccccCCHHHHHHHHhcCCCceeeeec-CCCCCCcchhhhHHHH---HHHHHHhcCCccEEEE-ecCccc--hhc---
Q psy13709 71 RGIFFSHRDMHSILNLYEQGKPFFLYTGR-GPSSDSMHLGHLIPFM---FTKWLQDVFDVPLVIQ-LTDDEK--SLW--- 140 (405)
Q Consensus 71 RGl~~~~~d~~~ll~~~~~~~~~~iytG~-~PT~~slHlGhli~~~---~~~~lQ~~~~~~v~I~-i~D~e~--~l~--- 140 (405)
|.|++-.++.+.-. .+++++++-|+. -|+ |.+||||+.+.+ ++.++++.-|..|..+ =.|.+. ...
T Consensus 52 ~~~~~~~~~~~~~~---~~~~~~~ittp~pY~N-G~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~ 127 (616)
T PLN02224 52 RALYCTSSSQESTV---DEADTFVLTTPLYYVN-APPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAA 127 (616)
T ss_pred ceeeccCCCcccCC---CCCCeEEEeCCCCCCC-CCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHH
Confidence 44554444443222 136677888887 666 599999988754 2334455445444444 335442 111
Q ss_pred -cCCCH-HHHHHHHHHHHHHHHHcCCCCC
Q psy13709 141 -KNIKP-EEAKKLAYENAKAIIACGFKQD 167 (405)
Q Consensus 141 -~~lt~-e~i~~~~~~~~~~~~A~G~dp~ 167 (405)
.+.++ +-+++++....+.+.++|++++
T Consensus 128 ~~g~~p~e~~~~~~~~~~~~~~~l~I~~D 156 (616)
T PLN02224 128 ANGRNPPEHCDIISQSYRTLWKDLDIAYD 156 (616)
T ss_pred HcCCChHHHHHHHHHHHHHHHHHcCCCCC
Confidence 13444 4455566666666777787664
No 84
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=84.76 E-value=0.77 Score=45.79 Aligned_cols=56 Identities=23% Similarity=0.272 Sum_probs=32.7
Q ss_pred Cceee-ecCCchHHHHHHH-HHhhhhCCCCceee-ecccccCCCCCCccCCCCCCCCceeccC
Q psy13709 239 PCLIP-CAIDQDPYFRLTR-DVAPKLGYVKPALI-HSTFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 239 ~~lvp-~G~DQd~~~~l~r-dla~r~~~~kp~~l-~~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
++.|. +|.|+-++..+.- -+..-.+.+.|-.+ .+.++ .+.| +|||||.+| .|++.|
T Consensus 235 ~~~v~~~G~D~~~fh~~~~pa~l~~~~~~~~~~~~~~~~~-~~~g--~kmSkS~gn-~i~~~~ 293 (319)
T cd00814 235 PELVHFIGKDIIRFHAIYWPAMLLGAGLPLPTRIVAHGYL-TVEG--KKMSKSRGN-VVDPDD 293 (319)
T ss_pred CceEEEEeechhhhhHHHHHHHHHhCCCCCCcEeeeeeeE-EECC--eeecccCCc-ccCHHH
Confidence 44554 7999988642211 12222445544333 34444 4456 899999988 888754
No 85
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=84.28 E-value=6 Score=44.68 Aligned_cols=92 Identities=16% Similarity=0.226 Sum_probs=54.8
Q ss_pred HHHHHcCcccccCCHHHHHHHHhcCCCceeeeecCCC-CCCcchhhhHHHH---HHHHHHhcCCccEEEEec-Cccc---
Q psy13709 66 HHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPS-SDSMHLGHLIPFM---FTKWLQDVFDVPLVIQLT-DDEK--- 137 (405)
Q Consensus 66 ~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~PT-~~slHlGhli~~~---~~~~lQ~~~~~~v~I~i~-D~e~--- 137 (405)
....+.|++....+ +++++++..|+ |+ .|.||+||+.... ++.++|+.-|..|....| |.+.
T Consensus 16 ~~W~~~~~f~~~~~---------~~~~~~i~~~p-Py~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpi 85 (805)
T PRK00390 16 KYWEENKTFKTTED---------SSKKYYVLDMF-PYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPA 85 (805)
T ss_pred HHHHHCCCcccCcc---------CCCCEEEEccC-CCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHH
Confidence 35566677654221 34578888887 65 4589999988753 344566655555555444 4321
Q ss_pred --hh-ccCCCH-HHHHHHHHHHHHHHHHcCCCCC
Q psy13709 138 --SL-WKNIKP-EEAKKLAYENAKAIIACGFKQD 167 (405)
Q Consensus 138 --~l-~~~lt~-e~i~~~~~~~~~~~~A~G~dp~ 167 (405)
.. ..+++. +-+.++..++.+++.++|+..+
T Consensus 86 e~~a~~~g~~~~~~~~~~~~~~~~~~~~lGi~~D 119 (805)
T PRK00390 86 ENAAIKTGTHPAEWTYENIANMKKQLKSLGFSYD 119 (805)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCccc
Confidence 11 113443 4445556677777888898544
No 86
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=84.02 E-value=1.1 Score=50.54 Aligned_cols=55 Identities=24% Similarity=0.160 Sum_probs=33.3
Q ss_pred ceeeecCCchHHHHHHHHHhhh--hCCCCc--eeeecccccCCCCCCccCCCCCCCCceeccC
Q psy13709 240 CLIPCAIDQDPYFRLTRDVAPK--LGYVKP--ALIHSTFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 240 ~lvp~G~DQd~~~~l~rdla~r--~~~~kp--~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
++...|.||-.+. +.+-++.. +....| .++.+.++...+| +|||||.+| .|+..|
T Consensus 488 d~~~~G~Di~~~w-~~~~l~~~~~~~~~~Pf~~v~~hg~v~~~~G--~KMSKS~GN-~i~p~~ 546 (800)
T PRK13208 488 DLRPQGHDIIRTW-LFYTILRAYLLTGKLPWKNIMISGMVLDPDG--KKMSKSKGN-VVTPEE 546 (800)
T ss_pred eEEEeecchhhhH-HHHHHHHHHHhcCCCCcceEEEeeEEECCCC--CCCCCCCCC-CCCHHH
Confidence 4555799997632 22222222 112234 3445777777777 899999998 777654
No 87
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=84.00 E-value=1 Score=51.83 Aligned_cols=55 Identities=22% Similarity=0.057 Sum_probs=32.0
Q ss_pred ceeeecCCchHHH---HHHHHHhhhhCCCCc-eeeecccccCCCCCCccCCCCCCCCceeccC
Q psy13709 240 CLIPCAIDQDPYF---RLTRDVAPKLGYVKP-ALIHSTFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 240 ~lvp~G~DQd~~~---~l~rdla~r~~~~kp-~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
+++..|.||-.+. .+..-++ -+|.+++ .++.+.++...+| +|||||.+| .|+..|
T Consensus 547 d~~~~G~Di~r~Wf~~l~~~~~~-~~~~~pfk~v~~hG~Vld~~G--~KMSKSlGN-vIdP~d 605 (975)
T PRK06039 547 DFIVEGIDQTRGWFYTLLALSTA-LFDRPPYKNVLVHGHVLDEDG--QKMSKSLGN-YVDPFE 605 (975)
T ss_pred eEEEechhhHhhHHHHHHHHHHH-hcCCCcccEEEEeeeEECCCC--CCcCCCCCC-cCCHHH
Confidence 4566799996532 1211111 1232222 3445666666677 899999998 776544
No 88
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=83.93 E-value=0.75 Score=50.02 Aligned_cols=54 Identities=24% Similarity=0.006 Sum_probs=30.7
Q ss_pred ceeeecCCchHHHH-HHHHHhhhhCCCC--ceeeecccccCCCCCCccCCCCCCCCceec
Q psy13709 240 CLIPCAIDQDPYFR-LTRDVAPKLGYVK--PALIHSTFFPALQGANTKMSASDLNSAIFL 296 (405)
Q Consensus 240 ~lvp~G~DQd~~~~-l~rdla~r~~~~k--p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L 296 (405)
++...|.||-.+.- ...-+...+.... +.++.+.++...+| +|||||.+| .|..
T Consensus 516 D~~~~G~D~~~~W~~~~l~~~~~l~~~~pfk~v~~hG~vld~~G--~KMSKS~GN-vi~p 572 (601)
T PF00133_consen 516 DLYIEGKDQIRGWFQSSLFLSVALFGKEPFKKVITHGFVLDEDG--RKMSKSKGN-VIDP 572 (601)
T ss_dssp SEEEEEGGGTTTHHHHHHHHHHHHSSSTSBSEEEEE--EEETTS--SB-BTTTTB---BH
T ss_pred ccccCCccchhhHHHHhHhhccccccCCchheeeecccccccce--eecccCCCc-ccCH
Confidence 56668999976542 2222222232223 34667788888888 899999988 6644
No 89
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=83.64 E-value=4.3 Score=43.84 Aligned_cols=75 Identities=19% Similarity=0.212 Sum_probs=42.5
Q ss_pred CCceeeeecCCCCCCcchhhhHHHH---HHHHHHhcCCccEEEEec-Cccch--hc----cCCCHHH-HHHHHHHHHHHH
Q psy13709 91 KPFFLYTGRGPSSDSMHLGHLIPFM---FTKWLQDVFDVPLVIQLT-DDEKS--LW----KNIKPEE-AKKLAYENAKAI 159 (405)
Q Consensus 91 ~~~~iytG~~PT~~slHlGhli~~~---~~~~lQ~~~~~~v~I~i~-D~e~~--l~----~~lt~e~-i~~~~~~~~~~~ 159 (405)
++++|-|.+==..|.+||||+.+.+ ...++|+.-|..++.+-| |.|.. .. .++|+++ +.++.......+
T Consensus 5 ~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~ 84 (558)
T COG0143 5 KKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELF 84 (558)
T ss_pred CcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 4555655554334699999987654 345567655555555444 44321 11 2466655 445555566666
Q ss_pred HHcCCC
Q psy13709 160 IACGFK 165 (405)
Q Consensus 160 ~A~G~d 165 (405)
.+++++
T Consensus 85 ~~l~Is 90 (558)
T COG0143 85 KALNIS 90 (558)
T ss_pred HHhCCc
Confidence 666654
No 90
>PLN02286 arginine-tRNA ligase
Probab=83.44 E-value=3 Score=45.23 Aligned_cols=60 Identities=13% Similarity=0.210 Sum_probs=44.7
Q ss_pred eecCCchHHHHHHHHHhhhhCCCCc------eeeecccccCCCCCCccCCCCCCCCceeccCCHHHHHH
Q psy13709 243 PCAIDQDPYFRLTRDVAPKLGYVKP------ALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKN 305 (405)
Q Consensus 243 p~G~DQd~~~~l~rdla~r~~~~kp------~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~ 305 (405)
-+|.||..|+.....+++.+|+.++ .++..-++-++.| +||||-.++ .|+|+|=-+++..
T Consensus 333 Vvg~~q~~hf~~v~~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g--~kmStR~G~-~v~L~dlldea~~ 398 (576)
T PLN02286 333 VTDVGQQQHFDMVFKAAKRAGWLPEDTYPRLEHVGFGLVLGEDG--KRFRTRSGE-VVRLVDLLDEAKS 398 (576)
T ss_pred EEeCcHHHHHHHHHHHHHHcCCCccccCCceEEEeeccEECCCC--CcccCCCCC-eeEHHHHHHHHHH
Confidence 4799999999999999999997522 2233456755666 799877666 9999985555443
No 91
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=83.41 E-value=4.1 Score=44.77 Aligned_cols=54 Identities=17% Similarity=0.141 Sum_probs=32.1
Q ss_pred eeeecCCchHHHHHHH-HHhhhhCCCCceee-ecccccCCCCCCccCCCCCCCCceeccC
Q psy13709 241 LIPCAIDQDPYFRLTR-DVAPKLGYVKPALI-HSTFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 241 lvp~G~DQd~~~~l~r-dla~r~~~~kp~~l-~~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
+...|.||-+++.+-= -+..-.+++.|..+ .+.++. +.| +|||||.+| .|+..|
T Consensus 257 ~~~~GkDii~fH~i~wpa~l~~~~~~~p~~v~~hg~l~-~eg--~KMSKS~GN-~i~p~d 312 (648)
T PRK12267 257 VHLVGKDILRFHAIYWPIMLMALGLPLPKKVFAHGWWL-MKD--GKMSKSKGN-VVDPEE 312 (648)
T ss_pred eEEEeeeecchhHHHHHHHHHhCCCCCCcEEEecceEE-ECC--ceecccCCc-ccCHHH
Confidence 3447999987543210 11112355556433 344544 355 899999988 888765
No 92
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=82.58 E-value=3.9 Score=43.27 Aligned_cols=65 Identities=15% Similarity=0.175 Sum_probs=36.3
Q ss_pred CCCcchhhhHHHH---HHHHHHhcCCccEEEEec-Cccc--hhc----cCCCHHH-HHHHHHHHHHHHHHcCCCCC
Q psy13709 103 SDSMHLGHLIPFM---FTKWLQDVFDVPLVIQLT-DDEK--SLW----KNIKPEE-AKKLAYENAKAIIACGFKQD 167 (405)
Q Consensus 103 ~~slHlGhli~~~---~~~~lQ~~~~~~v~I~i~-D~e~--~l~----~~lt~e~-i~~~~~~~~~~~~A~G~dp~ 167 (405)
.|.+||||+.+++ ++.++++.-|..+..+.+ |++. ... .+.+.++ ++++..++.+++.++|++++
T Consensus 13 ~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~I~~D 88 (511)
T PRK11893 13 NGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEALNISYD 88 (511)
T ss_pred CCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 4699999987753 333444444555544433 4321 111 1345544 44455577777888888765
No 93
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=81.46 E-value=4.5 Score=44.66 Aligned_cols=49 Identities=24% Similarity=0.274 Sum_probs=31.3
Q ss_pred ecCCchHHHHH---HHHHhhhhCCCCceee-ecccccCCCCCCccCCCCCCCCceeccC
Q psy13709 244 CAIDQDPYFRL---TRDVAPKLGYVKPALI-HSTFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 244 ~G~DQd~~~~l---~rdla~r~~~~kp~~l-~~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
.|.|-..++.+ +.=++ .|++.|-.+ .+.++.. +| +|||||.+| .|+..|
T Consensus 290 iGkDi~~fH~i~wpa~l~a--~g~~lP~~v~~hg~v~~-~G--~KMSKS~GN-vV~p~d 342 (673)
T PRK00133 290 IGKDIIYFHTLFWPAMLEG--AGYRLPTNVFAHGFLTV-EG--AKMSKSRGT-FIWART 342 (673)
T ss_pred EeecchhHHHHHHHHHHHh--CCCCCCCEEeeeccEEe-cC--CcccccCCc-ccCHHH
Confidence 68887775432 22222 455555433 4566655 77 899999998 888765
No 94
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=80.55 E-value=1.6 Score=49.62 Aligned_cols=55 Identities=25% Similarity=0.129 Sum_probs=36.0
Q ss_pred ceeeecCCchHHHHHHHHHhhh--hCCCCc--eeeecccccCCCCCCccCCCCCCCCceeccC
Q psy13709 240 CLIPCAIDQDPYFRLTRDVAPK--LGYVKP--ALIHSTFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 240 ~lvp~G~DQd~~~~l~rdla~r--~~~~kp--~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
++...|.||-.+.- ++-++.- +....| .++.+.++...+| +|||||.+| .|++.|
T Consensus 480 d~~~~G~Dii~fw~-~~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G--~KMSKS~GN-~i~p~~ 538 (861)
T TIGR00422 480 DLLVTGYDIIFFWV-ARMIFRSLALTGQVPFKEVYIHGLVRDEQG--RKMSKSLGN-VIDPLD 538 (861)
T ss_pred ceeecchhhhhHHH-HHHHHHHHHhcCCCchheEEEeeEEECCCC--CCCCcCCCC-CCCHHH
Confidence 45567999987652 2222222 222345 4556788888888 899999988 887655
No 95
>PLN02843 isoleucyl-tRNA synthetase
Probab=80.28 E-value=1.7 Score=49.96 Aligned_cols=54 Identities=26% Similarity=0.191 Sum_probs=32.4
Q ss_pred CceeeecCCchH-HH-HH-HHHHhhhhCCCC-ceeeecccccCCCCCCccCCCCCCCCceec
Q psy13709 239 PCLIPCAIDQDP-YF-RL-TRDVAPKLGYVK-PALIHSTFFPALQGANTKMSASDLNSAIFL 296 (405)
Q Consensus 239 ~~lvp~G~DQd~-~~-~l-~rdla~r~~~~k-p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L 296 (405)
.++...|.||.. || .+ ..-++- .|..+ ..++.+.++..-+| +|||||.+| .|..
T Consensus 565 aDl~~eG~Di~rgWf~s~l~~~~~~-~g~~Pfk~v~~HG~vld~~G--~KMSKSlGN-vI~p 622 (974)
T PLN02843 565 ADLYLEGSDQHRGWFQSSLLTSVAT-KGKAPYKSVLTHGFVLDEKG--FKMSKSLGN-VVDP 622 (974)
T ss_pred ceeeeeeccccchHHHHHHHHHHHh-cCCCccceEEEeccEECCCC--CCcCCCCCC-cCCH
Confidence 345668999987 22 22 122221 34322 23455777777777 899999998 6643
No 96
>PLN02959 aminoacyl-tRNA ligase
Probab=79.83 E-value=1.7 Score=50.62 Aligned_cols=54 Identities=19% Similarity=-0.011 Sum_probs=30.7
Q ss_pred ceeeecCCchHHHHHHHHHhhh--hCCCCce---eeecccccCCCCCCccCCCCCCCCceeccC
Q psy13709 240 CLIPCAIDQDPYFRLTRDVAPK--LGYVKPA---LIHSTFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 240 ~lvp~G~DQd~~~~l~rdla~r--~~~~kp~---~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
++...|.||-.+.. ..-+... +-...|. ++.+.++. ++| +|||||.+| .|.+.+
T Consensus 673 Dl~~sG~Dii~~wl-~~~l~~~~al~~~~P~p~~v~v~G~V~-~~G--~KMSKSkGN-vI~p~d 731 (1084)
T PLN02959 673 DLRVSGKDLIQNHL-TFAIYNHTAIWAEEHWPRGFRCNGHLM-LNS--EKMSKSTGN-FLTLRQ 731 (1084)
T ss_pred eEEEecccHHHHHH-HHHHHHHHHhcCCCCCCceEEEccEEe-cCC--cCccccCCC-cCCHHH
Confidence 45557999977652 2222221 1112232 33344444 677 899999998 777654
No 97
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=78.99 E-value=2 Score=46.41 Aligned_cols=56 Identities=23% Similarity=0.256 Sum_probs=40.9
Q ss_pred eecCCchHHHHHHHHHhhhhCCCCce-eee--cccccCCCCCCccCCCCCCCCceeccCCHHH
Q psy13709 243 PCAIDQDPYFRLTRDVAPKLGYVKPA-LIH--STFFPALQGANTKMSASDLNSAIFLTDTPKQ 302 (405)
Q Consensus 243 p~G~DQd~~~~l~rdla~r~~~~kp~-~l~--~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~ 302 (405)
-+|.||..|+.....+++.+|+..+. +.| .-++- +.| +||||-.++ .|.|+|=-++
T Consensus 330 V~g~dq~~h~~~l~~~~~~lg~~~~~~l~h~~~g~V~-~~g--~kmStR~G~-~v~l~dLlde 388 (562)
T PRK12451 330 VVGPEQSLHFNQFFTVLKKLGYTWVDGMEHVPFGLIL-KDG--KKMSTRKGR-VVLLEEVLEE 388 (562)
T ss_pred EeCCcHHHHHHHHHHHHHHcCCCcccCeEEEeeeeEe-cCC--CCCcCCCCC-eeEHHHHHHH
Confidence 37999999999999999999976432 222 23343 455 799998877 9999884444
No 98
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=78.59 E-value=1.5 Score=49.98 Aligned_cols=55 Identities=24% Similarity=0.188 Sum_probs=35.5
Q ss_pred ceeeecCCchHHHHHHHHHhhhh--CCCCc--eeeecccccCCCCCCccCCCCCCCCceeccC
Q psy13709 240 CLIPCAIDQDPYFRLTRDVAPKL--GYVKP--ALIHSTFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 240 ~lvp~G~DQd~~~~l~rdla~r~--~~~kp--~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
++...|.||-.+. .+|-++..+ ....| .++.+.++...+| +|||||.+| .|+..|
T Consensus 475 d~~~~G~Dii~~W-~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G--~KMSKSlGN-vIdP~d 533 (874)
T PRK05729 475 SVLVTGFDIIFFW-VARMIMMGLHFTGQVPFKDVYIHGLVRDEQG--RKMSKSKGN-VIDPLD 533 (874)
T ss_pred ccccccccccchH-HHHHHHHHHHhcCCCchhheEEeeeEECCCC--CCcccCCCC-CCCHHH
Confidence 3445799998764 233333322 12345 4556788888888 899999998 787655
No 99
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=77.97 E-value=1.9 Score=49.49 Aligned_cols=65 Identities=18% Similarity=0.210 Sum_probs=36.0
Q ss_pred ceeeecCCchHH-HHHH--HHHh--hhhCCCCceeeecccccCCCCCCccCCCCCCCCceeccC-----CHHHHHHHhhc
Q psy13709 240 CLIPCAIDQDPY-FRLT--RDVA--PKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTD-----TPKQVKNKVNK 309 (405)
Q Consensus 240 ~lvp~G~DQd~~-~~l~--rdla--~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D-----~p~~i~~KI~k 309 (405)
++...|.|+-++ ...- .-.| ++-.+|+ ..+++.++.. +| +|||||.+| .|++.+ .++.+|==+..
T Consensus 575 D~~~~GkDii~~H~~~~i~~~~a~~~~~~~Pk-~i~~~G~vl~-~G--~KMSKSlGN-vI~p~d~i~~yGaDalRl~Ll~ 649 (938)
T TIGR00395 575 DWRISGKDLIPNHLTFYIFHHVAIFPEKFWPR-GIVVNGYVML-EG--KKMSKSKGN-VLTLEQAVEKFGADVARLYIAD 649 (938)
T ss_pred eEEEEeeccccchHHHHHHHHHHcCCccccCc-EEEEeceEEe-CC--ccccCcCCC-CCCHHHHHHHcChHHHHHHHHh
Confidence 455689999763 2211 1111 1111222 4455566554 66 899999988 887765 44455444443
No 100
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=77.79 E-value=1.8 Score=50.30 Aligned_cols=55 Identities=18% Similarity=0.105 Sum_probs=35.3
Q ss_pred ceeeecCCchHHHHHHHHHhhhh--CCCCc--eeeecccccCCCCCCccCCCCCCCCceeccC
Q psy13709 240 CLIPCAIDQDPYFRLTRDVAPKL--GYVKP--ALIHSTFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 240 ~lvp~G~DQd~~~~l~rdla~r~--~~~kp--~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
++...|.||-.++ .+|=++..+ ....| .++.+.++..-+| +|||||.+| .|+..|
T Consensus 493 d~~~~G~Dii~~W-~a~~l~~~~~~~~~~Pfk~V~~hG~v~d~~G--~KMSKSkGN-vIdP~d 551 (1052)
T PRK14900 493 SVMETGHDIIFFW-VARMMMMGLHFMGEVPFRTVYLHPMVRDEKG--QKMSKTKGN-VIDPLV 551 (1052)
T ss_pred hhhcccccHHhHH-HHHHHHHHHHhcCCCccceeEecccEECCCC--CCccCCCCC-CCCHHH
Confidence 3445788987554 333333332 12334 3556788877777 899999988 887765
No 101
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=77.31 E-value=11 Score=40.22 Aligned_cols=76 Identities=16% Similarity=0.121 Sum_probs=43.5
Q ss_pred CCceee-eecCCCCCCcchhhhHHH---HHHHHHHhcCCccEEEE--ecCc----------c-chhc----cCCCHHH-H
Q psy13709 91 KPFFLY-TGRGPSSDSMHLGHLIPF---MFTKWLQDVFDVPLVIQ--LTDD----------E-KSLW----KNIKPEE-A 148 (405)
Q Consensus 91 ~~~~iy-tG~~PT~~slHlGhli~~---~~~~~lQ~~~~~~v~I~--i~D~----------e-~~l~----~~lt~e~-i 148 (405)
+.+.+| ||--+- +.+||||+.++ ..++++.+..|..|..+ |+|. . +.+. .++++.+ +
T Consensus 22 ~~v~mYvCGpTvy-~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~a 100 (490)
T PRK14536 22 GHVRLYGCGPTVY-NYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIA 100 (490)
T ss_pred CceEEEeeCCccC-CCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHHH
Confidence 346666 455555 58999997664 33444444445444433 6665 1 2221 1456544 4
Q ss_pred HHHHHHHHHHHHHcCCCCC
Q psy13709 149 KKLAYENAKAIIACGFKQD 167 (405)
Q Consensus 149 ~~~~~~~~~~~~A~G~dp~ 167 (405)
.++.....+++.++|+.+.
T Consensus 101 ~~~~~~f~~d~~~Lni~~~ 119 (490)
T PRK14536 101 AHYTAAFFRDTARLNIERP 119 (490)
T ss_pred HHHHHHHHHHHHHcCCCCC
Confidence 4555677888888888653
No 102
>PLN02943 aminoacyl-tRNA ligase
Probab=77.29 E-value=2 Score=49.33 Aligned_cols=65 Identities=18% Similarity=0.134 Sum_probs=40.4
Q ss_pred ceeeecCCchHHHHHHHHHhhhh--CCCCc--eeeecccccCCCCCCccCCCCCCCCceeccC-----CHHHHHHHhh
Q psy13709 240 CLIPCAIDQDPYFRLTRDVAPKL--GYVKP--ALIHSTFFPALQGANTKMSASDLNSAIFLTD-----TPKQVKNKVN 308 (405)
Q Consensus 240 ~lvp~G~DQd~~~~l~rdla~r~--~~~kp--~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D-----~p~~i~~KI~ 308 (405)
++...|.||-.+. ++|-++..+ ....| .+..+.++...+| +|||||.+| .|+..| .++.+|==+.
T Consensus 538 dl~~~G~Dii~fW-~a~m~~~~~~~~~~~Pf~~v~~hg~v~~~~G--~KMSKS~GN-~i~p~~~i~~ygaDalR~~l~ 611 (958)
T PLN02943 538 TVLETGHDILFFW-VARMVMMGIEFTGTVPFSYVYLHGLIRDSQG--RKMSKTLGN-VIDPLDTIKEFGTDALRFTLA 611 (958)
T ss_pred eEEEEeehHHHHH-HHHHHHhhhhhcCCCChheEEEeccEECCCC--CcccCcCCC-CCCHHHHHHhcCChHHHHHHH
Confidence 4556799997543 344333222 22335 3455777877788 899999988 887765 4455554444
No 103
>KOG0437|consensus
Probab=77.16 E-value=7.3 Score=43.17 Aligned_cols=98 Identities=17% Similarity=0.281 Sum_probs=44.5
Q ss_pred ccCCCCCCCCceeccCCHHHHHHHhhcccccCCccchhhhh--hcCCCCchHHHHHHHHhccCChhhHHHHHHHHhcCCC
Q psy13709 283 TKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQATVEEHR--ELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGAL 360 (405)
Q Consensus 283 ~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~~~~t~e~~~--~~ggn~~v~~~~~~l~~f~~~d~e~eei~~~~~~G~l 360 (405)
+|||||.+| -.-|+.+-+..---=++.|+-|.++++|..- +--+|..+--+|.+..+. +|+-+-+...++|..
T Consensus 709 EKMSKSTGN-fmTL~qaieKFgad~tRlalAdaGD~veDANF~ea~AnAaILRLyt~~ew~----eEm~~~~s~LrtGp~ 783 (1080)
T KOG0437|consen 709 EKMSKSTGN-FMTLEQAIEKFGADGTRLALADAGDGVEDANFVEANANAAILRLYTYVEWI----EEMCENRSSLRTGPA 783 (1080)
T ss_pred hhhccccCC-eeeHHHHHHHhCccceeeeeecccCCcccchhHHhcccHHHHHHHHHHHHH----HHHHhhHHhhccCch
Confidence 899999999 4444333222211123345566666665321 111222221223322222 222222334455522
Q ss_pred CHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy13709 361 LTGELKKILIDTITPIVTQHQEAMKG 386 (405)
Q Consensus 361 ~~~elK~~La~~i~~~l~~~qe~r~~ 386 (405)
.. =.-+..+..++..++.-.+.++.
T Consensus 784 ~~-FaDrvf~nemN~~i~~t~~aye~ 808 (1080)
T KOG0437|consen 784 ST-FADRVFENEMNALIAKTERAYED 808 (1080)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 23455666677766665555543
No 104
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=76.75 E-value=2.3 Score=45.36 Aligned_cols=54 Identities=20% Similarity=0.226 Sum_probs=32.5
Q ss_pred eeeecCCchHHHHHH-HHHhhhhCCCCce-eeecccccCCCCCCccCCCCCCCCceeccC
Q psy13709 241 LIPCAIDQDPYFRLT-RDVAPKLGYVKPA-LIHSTFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 241 lvp~G~DQd~~~~l~-rdla~r~~~~kp~-~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
+...|.|...+..+- .-+..-++++.|- ++.+.++. +.| +|||||.+| .|++.|
T Consensus 285 v~~~G~Di~~~h~~~~~a~l~~~~~~~~~~~~~~g~v~-~~g--~KmSKS~Gn-~i~~~d 340 (530)
T TIGR00398 285 IHFIGKDIVRFHTIYWPAMLMGLGLPLPTQVFSHGYLT-VEG--GKMSKSLGN-VVDPSD 340 (530)
T ss_pred EEEEecccchhHHHHHHHHHHhCCCCCCCEEEeeccEE-ECC--ceecccCCc-eecHHH
Confidence 445799998864222 1122234555453 33455554 446 899999998 888765
No 105
>PLN02563 aminoacyl-tRNA ligase
Probab=76.64 E-value=1.4 Score=50.69 Aligned_cols=14 Identities=43% Similarity=0.313 Sum_probs=11.1
Q ss_pred cCCCCCCCCceeccC
Q psy13709 284 KMSASDLNSAIFLTD 298 (405)
Q Consensus 284 KMSkS~~nsaI~L~D 298 (405)
|||||.+| .|...+
T Consensus 723 KMSKSKGN-vVdP~e 736 (963)
T PLN02563 723 KMSKSRGN-VVNPDD 736 (963)
T ss_pred ccccccCC-cCCHHH
Confidence 99999988 775543
No 106
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=75.92 E-value=3.6 Score=44.64 Aligned_cols=63 Identities=24% Similarity=0.260 Sum_probs=46.2
Q ss_pred eecCCchHHHHHHHHHhhhhCCCCce-e-eecccccCCCCCCccCCCCCCCCceeccCCHHHHHHH
Q psy13709 243 PCAIDQDPYFRLTRDVAPKLGYVKPA-L-IHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNK 306 (405)
Q Consensus 243 p~G~DQd~~~~l~rdla~r~~~~kp~-~-l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~K 306 (405)
-.|.||.+|+...+-++..+|+..+. . +|..+-.-..|.+.||||=.++ .|.|+|=-+++..|
T Consensus 340 V~gadq~~~~~ql~~~l~~~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~-~vtl~dllde~~er 404 (577)
T COG0018 340 VLGADQHGHFKQLKAVLELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGN-VVTLDDLLDEAGER 404 (577)
T ss_pred EeCCcchhHHHHHHHHHHHhcCCCccceEEEEEEeeeECCCCccccccCCc-eEEHHHHHHHHHHH
Confidence 47999999999999999999997773 3 3333322233345899998877 99999976666633
No 107
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=75.59 E-value=24 Score=35.24 Aligned_cols=76 Identities=18% Similarity=0.304 Sum_probs=41.0
Q ss_pred CCCceee-eecCCCCCCcchhhhHHHH---H-HHHHHhcCCccEEEE--ecCcc-chhcc----CCCHHHH-HHHHHHHH
Q psy13709 90 GKPFFLY-TGRGPSSDSMHLGHLIPFM---F-TKWLQDVFDVPLVIQ--LTDDE-KSLWK----NIKPEEA-KKLAYENA 156 (405)
Q Consensus 90 ~~~~~iy-tG~~PT~~slHlGhli~~~---~-~~~lQ~~~~~~v~I~--i~D~e-~~l~~----~lt~e~i-~~~~~~~~ 156 (405)
++.+.+| ||--+- +.+||||+-+++ + .++|+. .|..|.-+ |+|.. +-+.+ ++++.++ +++..+..
T Consensus 6 ~~~v~~Y~CGPTVY-d~~HiGhaR~~v~~D~l~R~L~~-~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~ 83 (300)
T PF01406_consen 6 PGKVRMYVCGPTVY-DYAHIGHARTYVFFDVLRRYLEY-LGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFF 83 (300)
T ss_dssp TTEEEEEEEEEBTT-S--BHHHHHHHHHHHHHHHHHHH-TT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCC-CCCCCcceeeeeeHHHHHHHHHH-cCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 3445555 566666 599999977754 3 344655 55555433 88854 33322 4666554 45556788
Q ss_pred HHHHHcCCCCC
Q psy13709 157 KAIIACGFKQD 167 (405)
Q Consensus 157 ~~~~A~G~dp~ 167 (405)
+++.++|+.+.
T Consensus 84 ~dm~~Lnv~~p 94 (300)
T PF01406_consen 84 EDMKALNVLPP 94 (300)
T ss_dssp HHHHHTT----
T ss_pred HHHHHcCCCCC
Confidence 88888888653
No 108
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=75.56 E-value=2.3 Score=45.66 Aligned_cols=52 Identities=23% Similarity=0.336 Sum_probs=31.5
Q ss_pred eecCCchHHHHH-HHHHhhhhC--CCCc-eeeecccccCCCCCCccCCCCCCCCceeccC
Q psy13709 243 PCAIDQDPYFRL-TRDVAPKLG--YVKP-ALIHSTFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 243 p~G~DQd~~~~l-~rdla~r~~--~~kp-~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
..|.|+-++..+ ---+..-.+ ++.| .++.+-++. ++| +|||||.+| .|+..|
T Consensus 292 ~~G~D~~~Fh~~~~p~~l~~~~~~~~~P~~v~~~G~v~-~~G--~KMSKS~GN-~I~p~d 347 (556)
T PRK12268 292 FIGKDNIPFHSIIWPAMLLGSGEPLKLPDEIVSSEYLT-LEG--GKFSKSRGW-GIWVDD 347 (556)
T ss_pred EEeeccCcchHHHHHHHHHhcCCCCCCCCEeeccCCEE-ECC--eeeccCCCc-ccCHHH
Confidence 368898776543 122222233 4444 344455554 576 899999998 888765
No 109
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=75.46 E-value=1 Score=46.49 Aligned_cols=35 Identities=31% Similarity=0.627 Sum_probs=18.5
Q ss_pred CCCCCcchhhhHHHH----HHHHHHhcCCccEEEEecCcc
Q psy13709 101 PSSDSMHLGHLIPFM----FTKWLQDVFDVPLVIQLTDDE 136 (405)
Q Consensus 101 PT~~slHlGhli~~~----~~~~lQ~~~~~~v~I~i~D~e 136 (405)
|. |.|||||+.+++ +.+|++..|+-.+++.=+|.+
T Consensus 10 ~N-g~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDeh 48 (391)
T PF09334_consen 10 PN-GDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEH 48 (391)
T ss_dssp TS-SS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-S
T ss_pred CC-CCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchh
Confidence 45 589999988764 334444444443344444654
No 110
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=75.46 E-value=9.9 Score=37.85 Aligned_cols=64 Identities=17% Similarity=0.101 Sum_probs=35.9
Q ss_pred CCcchhhhHHHH---HHHHHHhcCCccEEEEe-cCccc--hh----ccCCCHHHHHH-HHHHHHHHHHHcCCCCC
Q psy13709 104 DSMHLGHLIPFM---FTKWLQDVFDVPLVIQL-TDDEK--SL----WKNIKPEEAKK-LAYENAKAIIACGFKQD 167 (405)
Q Consensus 104 ~slHlGhli~~~---~~~~lQ~~~~~~v~I~i-~D~e~--~l----~~~lt~e~i~~-~~~~~~~~~~A~G~dp~ 167 (405)
|.+||||+.+.. ++.++++..|..|..+. .|++. .. ..++++.++.+ +...+.+++.++|++++
T Consensus 13 g~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D 87 (319)
T cd00814 13 GVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWLNISFD 87 (319)
T ss_pred CCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCC
Confidence 589999988754 23344444444444432 34331 11 12456655444 44566777888898765
No 111
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=75.38 E-value=10 Score=40.41 Aligned_cols=66 Identities=15% Similarity=0.127 Sum_probs=38.2
Q ss_pred CCCCCcchhhhHHHH---HHHHHHhcCCccEEEEec-Ccc--chh----ccCCCHHHHHH-HHHHHHHHHHHcCCCCC
Q psy13709 101 PSSDSMHLGHLIPFM---FTKWLQDVFDVPLVIQLT-DDE--KSL----WKNIKPEEAKK-LAYENAKAIIACGFKQD 167 (405)
Q Consensus 101 PT~~slHlGhli~~~---~~~~lQ~~~~~~v~I~i~-D~e--~~l----~~~lt~e~i~~-~~~~~~~~~~A~G~dp~ 167 (405)
|+ |.+||||+.+++ ++.++++..|..|..+.| |++ +.. ..++++.++.. +.....+++.++|++++
T Consensus 10 ~n-g~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D 86 (530)
T TIGR00398 10 AN-GKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWLNISFD 86 (530)
T ss_pred CC-CCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 55 589999988754 344455554555555433 432 111 12456655443 44566777888888765
No 112
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=75.02 E-value=3.4 Score=48.63 Aligned_cols=51 Identities=25% Similarity=0.189 Sum_probs=32.7
Q ss_pred CceeeecCCchHHHH---HHHHHhhhhCCCCc--eeeecccccCCCCCCccCCCCCCCCce
Q psy13709 239 PCLIPCAIDQDPYFR---LTRDVAPKLGYVKP--ALIHSTFFPALQGANTKMSASDLNSAI 294 (405)
Q Consensus 239 ~~lvp~G~DQd~~~~---l~rdla~r~~~~kp--~~l~~~~lp~L~G~~~KMSkS~~nsaI 294 (405)
.+++.-|.||....- +..-++- +| ..| .++.+.++..-+| +|||||.+| .|
T Consensus 674 aD~i~eG~Dq~rgWf~s~l~~s~~l-~~-~~PfK~VlvHG~Vld~dG--~KMSKSlGN-vI 729 (1205)
T PTZ00427 674 ADFIAEGLDQTRGWFYTLLVISTLL-FD-KAPFKNLICNGLVLASDG--KKMSKRLKN-YP 729 (1205)
T ss_pred ceEEEEecchhccHHHHHHHHHHHh-cC-CCCcceeEEccEEEcCCC--CCcccCCCC-CC
Confidence 467778999976542 2222221 23 234 3556777777777 899999998 55
No 113
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=74.82 E-value=16 Score=40.35 Aligned_cols=77 Identities=30% Similarity=0.396 Sum_probs=43.8
Q ss_pred CCCceeeeecCCC-CCCcchhhhHH---HHHH-HHHHhcCCccEEEE--ecCcc-chhc----cCCC-HHH-HHHHHHHH
Q psy13709 90 GKPFFLYTGRGPS-SDSMHLGHLIP---FMFT-KWLQDVFDVPLVIQ--LTDDE-KSLW----KNIK-PEE-AKKLAYEN 155 (405)
Q Consensus 90 ~~~~~iytG~~PT-~~slHlGhli~---~~~~-~~lQ~~~~~~v~I~--i~D~e-~~l~----~~lt-~e~-i~~~~~~~ 155 (405)
++.+.+|+ .+|| -+.+||||+-+ +.++ +||++.+|..|..+ |+|.. +-+. ..++ +.+ ++.+..+.
T Consensus 58 ~~~v~~Y~-CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~~~f 136 (651)
T PTZ00399 58 GRQVRWYT-CGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEF 136 (651)
T ss_pred CCeeEEEE-eCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 44455553 3344 25899999655 4444 44664666555444 66632 3222 1456 544 44555677
Q ss_pred HHHHHHcCCCCC
Q psy13709 156 AKAIIACGFKQD 167 (405)
Q Consensus 156 ~~~~~A~G~dp~ 167 (405)
.+++-++|+.+.
T Consensus 137 ~~d~~~Lni~~p 148 (651)
T PTZ00399 137 FEDMKALNVRPP 148 (651)
T ss_pred HHHHHHcCCCCC
Confidence 888888887653
No 114
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=74.55 E-value=2.6 Score=43.41 Aligned_cols=74 Identities=18% Similarity=0.189 Sum_probs=41.3
Q ss_pred CCCceee-eecCCCCCCcchhhhHHHH---HHHHHHhcCCccEEEE--ecCcc-chhc----cCCCHHHHH-HHHHHHHH
Q psy13709 90 GKPFFLY-TGRGPSSDSMHLGHLIPFM---FTKWLQDVFDVPLVIQ--LTDDE-KSLW----KNIKPEEAK-KLAYENAK 157 (405)
Q Consensus 90 ~~~~~iy-tG~~PT~~slHlGhli~~~---~~~~lQ~~~~~~v~I~--i~D~e-~~l~----~~lt~e~i~-~~~~~~~~ 157 (405)
|+.+.+| ||--|- +.+||||+.+++ +++++++..|..|..+ ++|.. +-+. ..++++++. ++.....+
T Consensus 7 ~~~v~~YvCGpTvY-~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~ 85 (384)
T PRK12418 7 GGTATMYVCGITPY-DATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFRE 85 (384)
T ss_pred CCeeEEEecCCCCC-CCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4344554 455555 589999977653 3444444445444443 44422 2221 246765554 44556777
Q ss_pred HHHHcCC
Q psy13709 158 AIIACGF 164 (405)
Q Consensus 158 ~~~A~G~ 164 (405)
++.++|+
T Consensus 86 d~~~Lni 92 (384)
T PRK12418 86 DMEALRV 92 (384)
T ss_pred HHHHhCC
Confidence 7888886
No 115
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=74.43 E-value=11 Score=41.54 Aligned_cols=77 Identities=14% Similarity=0.120 Sum_probs=41.1
Q ss_pred CCceeeeecCCCCCCcchhhhHHHH---HHHHHHhcCCccEEEE-ecCccch--h----ccCCCHHHH-HHHHHHHHHHH
Q psy13709 91 KPFFLYTGRGPSSDSMHLGHLIPFM---FTKWLQDVFDVPLVIQ-LTDDEKS--L----WKNIKPEEA-KKLAYENAKAI 159 (405)
Q Consensus 91 ~~~~iytG~~PT~~slHlGhli~~~---~~~~lQ~~~~~~v~I~-i~D~e~~--l----~~~lt~e~i-~~~~~~~~~~~ 159 (405)
+++++-|.+==..|.+||||+.+.+ ++.++++.-|..+..+ =+|++.. . ..+.+++++ .++...+.+++
T Consensus 4 ~~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l 83 (648)
T PRK12267 4 KTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELW 83 (648)
T ss_pred CCEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3455444443224699999987754 3344455445444444 3354321 1 114555444 44445666677
Q ss_pred HHcCCCCC
Q psy13709 160 IACGFKQD 167 (405)
Q Consensus 160 ~A~G~dp~ 167 (405)
.++|++.+
T Consensus 84 ~~lgI~~D 91 (648)
T PRK12267 84 KKLDISYD 91 (648)
T ss_pred HHcCCCCC
Confidence 77887654
No 116
>PLN02882 aminoacyl-tRNA ligase
Probab=74.40 E-value=3.3 Score=48.59 Aligned_cols=53 Identities=23% Similarity=0.097 Sum_probs=32.8
Q ss_pred CceeeecCCchHHH---HHHHHHhhhhCCCCc-eeeecccccCCCCCCccCCCCCCCCcee
Q psy13709 239 PCLIPCAIDQDPYF---RLTRDVAPKLGYVKP-ALIHSTFFPALQGANTKMSASDLNSAIF 295 (405)
Q Consensus 239 ~~lvp~G~DQd~~~---~l~rdla~r~~~~kp-~~l~~~~lp~L~G~~~KMSkS~~nsaI~ 295 (405)
.+++.-|.||-... .|..-.+- +|.+++ .++.+.++..-+| +|||||.+| .|.
T Consensus 568 aD~i~eG~Dq~RgWf~~ll~~s~~l-~~~~pfk~VivhG~vlde~G--~KMSKSlGN-vId 624 (1159)
T PLN02882 568 ADFVAEGLDQTRGWFYTLMVLSTAL-FDKPAFKNLICNGLVLAEDG--KKMSKSLKN-YPD 624 (1159)
T ss_pred ceEEEEecchhhhHHHHHHHHHHHh-cCCCCcceeEEccEEECCCC--CCcccCCCC-CCC
Confidence 46777899997654 22222221 344443 3445677766566 899999998 664
No 117
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=74.21 E-value=9 Score=38.58 Aligned_cols=40 Identities=13% Similarity=0.157 Sum_probs=22.2
Q ss_pred CceeeeecCCCCCCcchhhhHHHH---HHHHHHhcCCccEEEE
Q psy13709 92 PFFLYTGRGPSSDSMHLGHLIPFM---FTKWLQDVFDVPLVIQ 131 (405)
Q Consensus 92 ~~~iytG~~PT~~slHlGhli~~~---~~~~lQ~~~~~~v~I~ 131 (405)
+|.+.+|-=-..|.+||||+.+.. ++.++++.-|..|..+
T Consensus 2 ~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~ 44 (338)
T cd00818 2 EFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRR 44 (338)
T ss_pred CeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCc
Confidence 344444443234699999988753 3344444445445443
No 118
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=74.11 E-value=8.5 Score=39.46 Aligned_cols=43 Identities=16% Similarity=0.218 Sum_probs=24.6
Q ss_pred ceeeeecCCCCCCcchhhhHHHH---HHHHHHhcCCccEEEEec-Cc
Q psy13709 93 FFLYTGRGPSSDSMHLGHLIPFM---FTKWLQDVFDVPLVIQLT-DD 135 (405)
Q Consensus 93 ~~iytG~~PT~~slHlGhli~~~---~~~~lQ~~~~~~v~I~i~-D~ 135 (405)
+++.+|.==..|.|||||+.+.. +..++++.-|..|....| |.
T Consensus 3 f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~ 49 (382)
T cd00817 3 FVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDH 49 (382)
T ss_pred EEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCC
Confidence 44444443334699999988754 344455554555544434 54
No 119
>PLN02946 cysteine-tRNA ligase
Probab=74.02 E-value=16 Score=39.48 Aligned_cols=74 Identities=15% Similarity=0.117 Sum_probs=42.4
Q ss_pred CCceeeeecCCC-CCCcchhhhHHHH---HHHHHHhcCCccEEEE--ecCcc-chhc----cCCCHHHH-HHHHHHHHHH
Q psy13709 91 KPFFLYTGRGPS-SDSMHLGHLIPFM---FTKWLQDVFDVPLVIQ--LTDDE-KSLW----KNIKPEEA-KKLAYENAKA 158 (405)
Q Consensus 91 ~~~~iytG~~PT-~~slHlGhli~~~---~~~~lQ~~~~~~v~I~--i~D~e-~~l~----~~lt~e~i-~~~~~~~~~~ 158 (405)
..+.+|+ -+|| -+.+||||+.+++ +++++.+..|..|..+ ++|.. +-+. .++++.++ .++..+..++
T Consensus 79 ~~v~~Y~-CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~d 157 (557)
T PLN02946 79 GKVGMYV-CGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSD 157 (557)
T ss_pred CceeEEE-eCCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3456664 2555 3589999976643 3444444445555443 55532 2222 25676554 4555677788
Q ss_pred HHHcCCC
Q psy13709 159 IIACGFK 165 (405)
Q Consensus 159 ~~A~G~d 165 (405)
+.++|+.
T Consensus 158 ~~~LnI~ 164 (557)
T PLN02946 158 MAYLHCL 164 (557)
T ss_pred HHHCCCC
Confidence 8888875
No 120
>KOG2007|consensus
Probab=72.94 E-value=14 Score=39.28 Aligned_cols=45 Identities=33% Similarity=0.598 Sum_probs=32.2
Q ss_pred CCCceeeeecCCC-CCCcchhh---hHHHHHHH-HHHhcCCccEEEE--ecCc
Q psy13709 90 GKPFFLYTGRGPS-SDSMHLGH---LIPFMFTK-WLQDVFDVPLVIQ--LTDD 135 (405)
Q Consensus 90 ~~~~~iytG~~PT-~~slHlGh---li~~~~~~-~lQ~~~~~~v~I~--i~D~ 135 (405)
++.+..|+ -+|| -++-|+|| ||.|.+++ .|++.+|..|..+ |+|.
T Consensus 53 ~~~v~wY~-CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDV 104 (586)
T KOG2007|consen 53 GNKVTWYI-CGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDV 104 (586)
T ss_pred CCeEEEEE-ecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccch
Confidence 55677765 4677 46899999 66676554 4999999887665 7774
No 121
>PLN02610 probable methionyl-tRNA synthetase
Probab=72.78 E-value=13 Score=42.10 Aligned_cols=76 Identities=13% Similarity=0.044 Sum_probs=42.6
Q ss_pred CceeeeecCCCCCCcchhhhHHH----HHHHHHHhcCCccEEEEecCc-cch-h-----ccCCCHHHH-HHHHHHHHHHH
Q psy13709 92 PFFLYTGRGPSSDSMHLGHLIPF----MFTKWLQDVFDVPLVIQLTDD-EKS-L-----WKNIKPEEA-KKLAYENAKAI 159 (405)
Q Consensus 92 ~~~iytG~~PT~~slHlGhli~~----~~~~~lQ~~~~~~v~I~i~D~-e~~-l-----~~~lt~e~i-~~~~~~~~~~~ 159 (405)
+++|-|.+==..|.|||||+.+. .+..++++.-|..+..+.|.| +.. + ....+++++ .++.......+
T Consensus 18 ~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~~~ 97 (801)
T PLN02610 18 NILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKEVY 97 (801)
T ss_pred CEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 56666655433569999998852 244556666566666655544 321 1 124555443 44444555556
Q ss_pred HHcCCCCC
Q psy13709 160 IACGFKQD 167 (405)
Q Consensus 160 ~A~G~dp~ 167 (405)
.++|++.+
T Consensus 98 ~~l~i~~D 105 (801)
T PLN02610 98 DWFDISFD 105 (801)
T ss_pred HHcCCccc
Confidence 67776544
No 122
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=72.39 E-value=8.1 Score=38.24 Aligned_cols=13 Identities=38% Similarity=0.838 Sum_probs=10.4
Q ss_pred CCCcchhhhHHHH
Q psy13709 103 SDSMHLGHLIPFM 115 (405)
Q Consensus 103 ~~slHlGhli~~~ 115 (405)
.|.+||||+.+.+
T Consensus 12 ~g~~HiGH~~~~i 24 (312)
T cd00668 12 NGSLHLGHALTHI 24 (312)
T ss_pred CCCcchhHHHHHH
Confidence 4699999988743
No 123
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=72.30 E-value=3.3 Score=47.85 Aligned_cols=52 Identities=27% Similarity=0.222 Sum_probs=33.1
Q ss_pred ceeeecCCchHHHHHHHHHhhhh--CCCCce--eeecccccCCCCCCccCCCCCCCCcee
Q psy13709 240 CLIPCAIDQDPYFRLTRDVAPKL--GYVKPA--LIHSTFFPALQGANTKMSASDLNSAIF 295 (405)
Q Consensus 240 ~lvp~G~DQd~~~~l~rdla~r~--~~~kp~--~l~~~~lp~L~G~~~KMSkS~~nsaI~ 295 (405)
++...|.||-.+. .+|=++..+ ....|. ++.+.++-.-+| +|||||.+| .|.
T Consensus 540 d~~~~G~Dii~~W-~arm~~~~~~~~~~~Pfk~v~~HG~v~d~~G--~KMSKSlGN-vId 595 (995)
T PTZ00419 540 SLLETGSDILFFW-VARMVMMSLHLTDKLPFKTVFLHAMVRDSQG--EKMSKSKGN-VID 595 (995)
T ss_pred cEEEechhHHhHH-HHHHHHHHHHhcCCCChHHHhccceEECCCC--CCcccCCCC-cCC
Confidence 4556788887643 223233332 224563 566788877777 899999998 664
No 124
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=72.22 E-value=25 Score=39.74 Aligned_cols=52 Identities=25% Similarity=0.197 Sum_probs=29.9
Q ss_pred ecCCchHHHHHHHHHhhh----hCC---CCce--eeecccccCCCCCCccCCCCCCCCceeccC
Q psy13709 244 CAIDQDPYFRLTRDVAPK----LGY---VKPA--LIHSTFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 244 ~G~DQd~~~~l~rdla~r----~~~---~kp~--~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
+|+|+-+++.+=--+-.+ .|+ .+|. ++..-++.+-.| +|||||.+| .|-+++
T Consensus 532 gG~ehavlHLly~rF~Hkal~d~g~~p~~epf~~L~~qGmVl~~~g--~KMSKSKgN-~v~p~~ 592 (814)
T COG0495 532 GGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEG--EKMSKSKGN-VVDPEE 592 (814)
T ss_pred cchhHHHHHHHHHHHHHHHhcccCcCCCccchhhhhccceEEecCC--CccccccCC-CCCHHH
Confidence 688887766443222222 232 2232 334455555555 799999988 776554
No 125
>PLN02563 aminoacyl-tRNA ligase
Probab=71.20 E-value=19 Score=41.60 Aligned_cols=96 Identities=13% Similarity=0.099 Sum_probs=52.7
Q ss_pred HHHHHHcCcccccCCHHHHHHHHhcCCCceeeeecCCCCCC-cchhhhHHHH---HHHHHHhcCCccEEEEecCc-cch-
Q psy13709 65 VHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDS-MHLGHLIPFM---FTKWLQDVFDVPLVIQLTDD-EKS- 138 (405)
Q Consensus 65 ~~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~PT~~s-lHlGhli~~~---~~~~lQ~~~~~~v~I~i~D~-e~~- 138 (405)
.....+.++|....+.+ .+++++++.+|+=...|. ||+||+.... +..++++.-|..|...+|=+ +..
T Consensus 90 q~~W~e~~~f~~~~~~~------~~k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlP 163 (963)
T PLN02563 90 QRYWEENRTFRTPDDVD------TSKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLP 163 (963)
T ss_pred HHHHHhCCCcccccccc------CCCCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcH
Confidence 34556667765432111 234568888898433565 9999988753 34456665555555545533 210
Q ss_pred -----hccCCCH-HHHHHHHHHHHHHHHHcCCCC
Q psy13709 139 -----LWKNIKP-EEAKKLAYENAKAIIACGFKQ 166 (405)
Q Consensus 139 -----l~~~lt~-e~i~~~~~~~~~~~~A~G~dp 166 (405)
...+.+. +-+.++...+.+++.++|+.-
T Consensus 164 iE~~a~~~g~~p~~~~~~~i~~~~~q~~~lG~s~ 197 (963)
T PLN02563 164 AEQYAIETGTHPKITTLKNIARFRSQLKSLGFSY 197 (963)
T ss_pred HHHHHHHcCCChHHhHHHHHHHHHHHHHHhCcEe
Confidence 0012222 334455556677788888643
No 126
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=71.12 E-value=15 Score=39.00 Aligned_cols=75 Identities=11% Similarity=0.111 Sum_probs=41.8
Q ss_pred Cceee-eecCCCCCCcchhhhHHHH---HHHHHHhcCCccEEE--EecCc-----------cchhc----cCCCHHH-HH
Q psy13709 92 PFFLY-TGRGPSSDSMHLGHLIPFM---FTKWLQDVFDVPLVI--QLTDD-----------EKSLW----KNIKPEE-AK 149 (405)
Q Consensus 92 ~~~iy-tG~~PT~~slHlGhli~~~---~~~~lQ~~~~~~v~I--~i~D~-----------e~~l~----~~lt~e~-i~ 149 (405)
.+.+| ||--+- +.+||||+.+++ +++++.+..|..|.. -|+|. .+.+. .+.++.+ +.
T Consensus 21 ~v~mY~CGpTVY-d~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a~ 99 (481)
T PRK14534 21 DVKVYACGPTVY-NYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISR 99 (481)
T ss_pred ceEEEeCCCCCC-CCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHHH
Confidence 45555 344444 589999977643 333333334444433 26665 22222 1456644 44
Q ss_pred HHHHHHHHHHHHcCCCCC
Q psy13709 150 KLAYENAKAIIACGFKQD 167 (405)
Q Consensus 150 ~~~~~~~~~~~A~G~dp~ 167 (405)
++.....+++-++|+.+.
T Consensus 100 ~~~~~f~~d~~~Lni~~~ 117 (481)
T PRK14534 100 FFTEAFFDDCKKLNIVYP 117 (481)
T ss_pred HHHHHHHHHHHHcCCCCC
Confidence 555677788888887654
No 127
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=70.25 E-value=9.9 Score=37.82 Aligned_cols=74 Identities=14% Similarity=0.147 Sum_probs=37.6
Q ss_pred eeeeecCCCCCCcchhhhHHHH---HHHHHHhcCCccE-EEEecCccc-hh----c-cCCCHHH-HHHHHHHHHHHHHHc
Q psy13709 94 FLYTGRGPSSDSMHLGHLIPFM---FTKWLQDVFDVPL-VIQLTDDEK-SL----W-KNIKPEE-AKKLAYENAKAIIAC 162 (405)
Q Consensus 94 ~iytG~~PT~~slHlGhli~~~---~~~~lQ~~~~~~v-~I~i~D~e~-~l----~-~~lt~e~-i~~~~~~~~~~~~A~ 162 (405)
.+.++.=-..|.+||||+.+++ ++.++++.-|..| ++.-.|++. .+ . .+.+..+ ++++..+..+++.++
T Consensus 3 ~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~l 82 (314)
T cd00812 3 YILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRM 82 (314)
T ss_pred EEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 3334433334699999988754 2333344334444 333234321 01 0 1344433 344455667777888
Q ss_pred CCCCC
Q psy13709 163 GFKQD 167 (405)
Q Consensus 163 G~dp~ 167 (405)
|+.++
T Consensus 83 gi~~d 87 (314)
T cd00812 83 GFSYD 87 (314)
T ss_pred cccee
Confidence 88654
No 128
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=70.24 E-value=1.9 Score=48.84 Aligned_cols=14 Identities=43% Similarity=0.283 Sum_probs=11.4
Q ss_pred cCCCCCCCCceeccC
Q psy13709 284 KMSASDLNSAIFLTD 298 (405)
Q Consensus 284 KMSkS~~nsaI~L~D 298 (405)
|||||.+| .|.+.|
T Consensus 604 KMSKS~GN-~v~p~~ 617 (842)
T TIGR00396 604 KMSKSKGN-GIDPQE 617 (842)
T ss_pred hhhhcCCC-cCCHHH
Confidence 99999988 776654
No 129
>PLN02224 methionine-tRNA ligase
Probab=70.04 E-value=4 Score=44.66 Aligned_cols=51 Identities=18% Similarity=0.168 Sum_probs=30.7
Q ss_pred ecCCchHHHHHH-HHHhhhhCCCCceee-ecccccCCCCCCccCCCCCCCCceeccC
Q psy13709 244 CAIDQDPYFRLT-RDVAPKLGYVKPALI-HSTFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 244 ~G~DQd~~~~l~-rdla~r~~~~kp~~l-~~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
+|.|--+++.+- --+.-..|++.|..+ .+-++ .++| +|||||.+| .|+..+
T Consensus 327 iGKDii~fH~i~wpa~l~~~g~~~P~~i~~~g~l-~~eG--~KMSKS~GN-~i~p~e 379 (616)
T PLN02224 327 IGKDILRFHAVYWPAMLMSAGLELPKMVFGHGFL-TKDG--MKMGKSLGN-TLEPFE 379 (616)
T ss_pred EeecccccHHHHHHHHHHHCCCCCCcEEEecccE-ecCC--ccccccCCc-cCCHHH
Confidence 688887754221 111112355555433 34554 5677 899999988 888765
No 130
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=69.47 E-value=3.9 Score=42.55 Aligned_cols=70 Identities=16% Similarity=0.116 Sum_probs=40.2
Q ss_pred eeeecCCCCCCcchhhhHHHH---HHHHHHhcCCccEEEE--ecCcc-chhc----cCCCHHHH-HHHHHHHHHHHHHcC
Q psy13709 95 LYTGRGPSSDSMHLGHLIPFM---FTKWLQDVFDVPLVIQ--LTDDE-KSLW----KNIKPEEA-KKLAYENAKAIIACG 163 (405)
Q Consensus 95 iytG~~PT~~slHlGhli~~~---~~~~lQ~~~~~~v~I~--i~D~e-~~l~----~~lt~e~i-~~~~~~~~~~~~A~G 163 (405)
..||--|- +.+||||+.+++ +++++++..|..|..+ ++|.. +-+. .+.+++++ .++..+..+++-++|
T Consensus 40 YvCGpTvY-~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d~~~Ln 118 (411)
T TIGR03447 40 YVCGITPY-DATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDMEALR 118 (411)
T ss_pred EEeCCccC-CCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 44666666 599999977653 3444444445555544 44421 2221 24676554 445556777777777
Q ss_pred CC
Q psy13709 164 FK 165 (405)
Q Consensus 164 ~d 165 (405)
+.
T Consensus 119 i~ 120 (411)
T TIGR03447 119 VL 120 (411)
T ss_pred CC
Confidence 54
No 131
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=66.04 E-value=3.7 Score=41.71 Aligned_cols=63 Identities=25% Similarity=0.256 Sum_probs=40.1
Q ss_pred eecCCchHHHHHHHHHhhhhCCCC--ceeeec--ccccCCCCCCccCCCCCCCCceeccCCHHHHHHHh
Q psy13709 243 PCAIDQDPYFRLTRDVAPKLGYVK--PALIHS--TFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKV 307 (405)
Q Consensus 243 p~G~DQd~~~~l~rdla~r~~~~k--p~~l~~--~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI 307 (405)
.+|.||..||.-...+++.+|+.. .-+.|. .++-+-+|. .|||+-.++ .|.|+|=-++..++.
T Consensus 244 V~~~~q~~hf~~l~~~l~~lg~~~~~~~~~H~~~g~vl~~~gk-~~mstR~G~-~i~l~dllde~~~~a 310 (354)
T PF00750_consen 244 VVGADQKGHFKQLFAILEALGYDPEAVKLQHVSFGVVLLKDGK-VKMSTRKGN-VITLDDLLDEAVERA 310 (354)
T ss_dssp EEEGGGHHHHHHHHHHHHHTT-HHHHCTEEEEEE-EEEETTBE-ESS-TTTTS-STBHHHHHHHHHHHH
T ss_pred EecCchhhHHHHHHHHHHHhCCCCCCCEEEEEEEEEEEcCCCC-ccccCCCCC-ceEHHHHHHHHHHHH
Confidence 479999999999999999999721 122232 333333441 279999877 999977555554443
No 132
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=65.58 E-value=29 Score=39.55 Aligned_cols=61 Identities=13% Similarity=0.234 Sum_probs=37.5
Q ss_pred HHHHHHcCcccccCCHHHHHHHHhcCCCceeeeecCCCCCCcchhhhHHHH---HHHHHHhcCCccEEEEec
Q psy13709 65 VHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFM---FTKWLQDVFDVPLVIQLT 133 (405)
Q Consensus 65 ~~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~PT~~slHlGhli~~~---~~~~lQ~~~~~~v~I~i~ 133 (405)
.....+.|+|....+ +.+++|++++|.==..|.||+||++... +..++++.-|..+....|
T Consensus 15 ~~~W~~~~~f~~~~~--------~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G 78 (861)
T TIGR00422 15 YKKWEKSGFFKPDGN--------SNKPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPG 78 (861)
T ss_pred HHHHHHCCCcccCcc--------cCCCeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCC
Confidence 346677888865432 2356788888764334699999988753 334456654554444444
No 133
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=65.45 E-value=25 Score=36.31 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=17.0
Q ss_pred ecccccCCCCCCccCCCCCCCCceecc
Q psy13709 271 HSTFFPALQGANTKMSASDLNSAIFLT 297 (405)
Q Consensus 271 ~~~~lp~L~G~~~KMSkS~~nsaI~L~ 297 (405)
.+.-+...+| +|||||.+| .|.+.
T Consensus 250 ~H~g~l~~~G--~KMSKSlGN-~i~~~ 273 (384)
T PRK12418 250 VHAGMIGLDG--EKMSKSRGN-LVFVS 273 (384)
T ss_pred EECCEECCCC--CcccCcCCC-cCCHH
Confidence 3444445677 899999998 77664
No 134
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=65.41 E-value=2.4 Score=42.15 Aligned_cols=51 Identities=24% Similarity=0.100 Sum_probs=21.9
Q ss_pred ecCCc-hHHHHHHHHHhhhhCCCCc--eeeecccccCCCCCCccCCCCCCCCceeccC
Q psy13709 244 CAIDQ-DPYFRLTRDVAPKLGYVKP--ALIHSTFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 244 ~G~DQ-d~~~~l~rdla~r~~~~kp--~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
+|+|- -||.+--+-.++-....+. .-+|+-+|.- .| +|||||.+| .|.+.|
T Consensus 212 GG~DL~FPHHENEiAqs~a~~g~~~a~~W~H~g~l~~-~g--~KMSKSlgN-~~~i~d 265 (300)
T PF01406_consen 212 GGIDLIFPHHENEIAQSEAATGKPFANYWMHNGHLNV-DG--EKMSKSLGN-FITIRD 265 (300)
T ss_dssp EEGGGTTTHHHHHHHHHHHHHSS-SEEEEEEE--EEE-TT--CE--TTTT----BHHH
T ss_pred cccccCCCCccchHHHHHHhhCchHHHHHHHHHHHhh-cC--ccccccCCC-EEEHHH
Confidence 56554 3565443333333322222 2345555533 66 899999988 776644
No 135
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=65.36 E-value=11 Score=40.71 Aligned_cols=44 Identities=25% Similarity=0.290 Sum_probs=27.5
Q ss_pred CCCCceeeecccccCCCCCCccCCCCCCCCceeccC-----CHHHHHHHhhc
Q psy13709 263 GYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTD-----TPKQVKNKVNK 309 (405)
Q Consensus 263 ~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D-----~p~~i~~KI~k 309 (405)
+.+.|..+.+.-.-.+.| +|||||.+| .||..+ .++.+|=-+.+
T Consensus 314 ~~~lP~~i~ahg~l~~~G--~KmSKSrG~-~V~~~~~~~~~~~D~lRYyL~~ 362 (558)
T COG0143 314 GLPLPTRIFAHGFLTLEG--QKMSKSRGN-VVDPDELLEQYGVDALRYYLAR 362 (558)
T ss_pred CCCCCCEEEeeeeEEECC--ccccccCCc-EEeHHHHHHHcCchHhHHHHHH
Confidence 444565555433344566 899999988 998776 44455444443
No 136
>KOG0433|consensus
Probab=65.17 E-value=7.1 Score=43.20 Aligned_cols=63 Identities=25% Similarity=0.196 Sum_probs=39.0
Q ss_pred CCCceeeecCCch-HHHHH--HHHHhhhhCCCCceeeecccccCCCCCCccCCCCCCCCceeccCCHHHHHHH
Q psy13709 237 KVPCLIPCAIDQD-PYFRL--TRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNK 306 (405)
Q Consensus 237 ~~~~lvp~G~DQd-~~~~l--~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~K 306 (405)
..+++..-|.||. +||.. ---+|-+-..|=-.++.+.|.-.=.| .|||||.+| .| +|+.|-+.
T Consensus 565 ~~aDv~LEG~DQ~rGWFQSsLLTsvA~q~kAPYk~vivHGFtlDE~G--~KMSKSlGN-Vi----dP~~v~~G 630 (937)
T KOG0433|consen 565 HVADVYLEGVDQFRGWFQSSLLTSVAVQNKAPYKKVIVHGFTLDENG--NKMSKSLGN-VV----DPTMVTDG 630 (937)
T ss_pred cceeeEEecchhcchHHHHHHHHHHHHhccCCchheeeeeeEecCCc--cchhhcccC-cC----CHHHHhCC
Confidence 3456666799984 67742 23555543333234566777766666 899999998 55 45555443
No 137
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=63.25 E-value=7.2 Score=27.97 Aligned_cols=31 Identities=26% Similarity=0.518 Sum_probs=26.2
Q ss_pred cccHHHHHHhhCCCCCCHHHHHHHHHHhhhhH
Q psy13709 34 GVDYDKLIKKFGSSKIDDELIARFEKVTNKKV 65 (405)
Q Consensus 34 ~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~ 65 (405)
.||+++++. ||-+||+++..+-|..++|+++
T Consensus 17 kvdWd~wvS-f~GrPltdevK~a~k~i~~~~l 47 (49)
T PF06543_consen 17 KVDWDKWVS-FDGRPLTDEVKEAMKLIFGKRL 47 (49)
T ss_pred ccchHHhee-eCCeeCCHHHHHHHHHHHhhhc
Confidence 488999875 8999999998888888888643
No 138
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=63.24 E-value=20 Score=39.02 Aligned_cols=45 Identities=11% Similarity=0.203 Sum_probs=25.8
Q ss_pred cCCCceeeeecCCCCCCcchhhhHHHH---HHHHHHhcCCccEEEEec
Q psy13709 89 QGKPFFLYTGRGPSSDSMHLGHLIPFM---FTKWLQDVFDVPLVIQLT 133 (405)
Q Consensus 89 ~~~~~~iytG~~PT~~slHlGhli~~~---~~~~lQ~~~~~~v~I~i~ 133 (405)
++++|++..|.==..|.||+||.+... ++.++++.-|..|....|
T Consensus 21 ~~~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G 68 (601)
T PF00133_consen 21 NKPKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPG 68 (601)
T ss_dssp TSGEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCC
Confidence 355677777653334699999998864 234466655555555544
No 139
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=61.15 E-value=30 Score=38.38 Aligned_cols=77 Identities=19% Similarity=0.170 Sum_probs=44.4
Q ss_pred CCCceee-eecCCCCCCcchhhhHHHH---HHHHHHhcCCccEEEE--ecCcc-chhc----cCCCHHHH-HHHHHHHHH
Q psy13709 90 GKPFFLY-TGRGPSSDSMHLGHLIPFM---FTKWLQDVFDVPLVIQ--LTDDE-KSLW----KNIKPEEA-KKLAYENAK 157 (405)
Q Consensus 90 ~~~~~iy-tG~~PT~~slHlGhli~~~---~~~~lQ~~~~~~v~I~--i~D~e-~~l~----~~lt~e~i-~~~~~~~~~ 157 (405)
++.+.+| ||--+- +.+||||+.+++ +++++.+..|..|..+ ++|.. +-+. .++++.++ .++.....+
T Consensus 246 ~~~V~mYvCGPTVY-d~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~ 324 (699)
T PRK14535 246 PENVRMYVCGMTVY-DYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHE 324 (699)
T ss_pred CCceEEEecCCcCC-CCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3455665 454444 589999977643 3444444445555544 55532 2222 24666554 455567778
Q ss_pred HHHHcCCCCC
Q psy13709 158 AIIACGFKQD 167 (405)
Q Consensus 158 ~~~A~G~dp~ 167 (405)
++.++|+.+.
T Consensus 325 d~~~LnI~~p 334 (699)
T PRK14535 325 DADALGVLRP 334 (699)
T ss_pred HHHHcCCCCC
Confidence 8888888654
No 140
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=59.57 E-value=5.1 Score=44.19 Aligned_cols=36 Identities=28% Similarity=0.379 Sum_probs=24.1
Q ss_pred eeeecccccCCCCCCccCCCCCCCCceeccC-----CHHHHHHHh
Q psy13709 268 ALIHSTFFPALQGANTKMSASDLNSAIFLTD-----TPKQVKNKV 307 (405)
Q Consensus 268 ~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D-----~p~~i~~KI 307 (405)
+-+|+-++. +.| +|||||.+| .|.+.| +|+.+|==+
T Consensus 495 yWmHnG~V~-vdG--eKMSKSLGN-~it~~dlLe~ygpdalRl~l 535 (699)
T PRK14535 495 YWLHNGFIR-VDG--EKMSKSLGN-FFTIREVLKQYDPEVVRFFI 535 (699)
T ss_pred EEEECCeEe-eCC--CccCCCCCC-cCCHHHHHHhCCHHHHHHHH
Confidence 355666666 677 899999988 666654 455554433
No 141
>PLN02660 pantoate--beta-alanine ligase
Probab=59.00 E-value=1.2e+02 Score=30.13 Aligned_cols=64 Identities=14% Similarity=0.237 Sum_probs=44.1
Q ss_pred CceeeecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCCCCceeccCCHHHHHHHhhc
Q psy13709 239 PCLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNK 309 (405)
Q Consensus 239 ~~lvp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k 309 (405)
|+..-.|.--+|-+.+.|.+++.++++ -.++-.|++---+| ==||+= ..||++...+....|.+
T Consensus 147 P~~a~FGeKD~QQl~vIrrmV~dL~~~-v~I~~~ptvRe~dG--LA~SSR----N~yLs~~eR~~A~~l~~ 210 (284)
T PLN02660 147 PDVAVFGKKDYQQWRVIRRMVRDLDFD-IEVVGSPIVREADG--LAMSSR----NVRLSAEEREKALSISR 210 (284)
T ss_pred CCEeeecchHHHHHHHHHHHHHHcCCC-ceEEeeCceECCCC--Ceeccc----cccCCHHHHHHHHHHHH
Confidence 555556866777778889999999884 33455788888888 577753 45787766555444444
No 142
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=58.69 E-value=52 Score=34.33 Aligned_cols=25 Identities=32% Similarity=0.301 Sum_probs=17.5
Q ss_pred eecccccCCCCCCccCCCCCCCCceecc
Q psy13709 270 IHSTFFPALQGANTKMSASDLNSAIFLT 297 (405)
Q Consensus 270 l~~~~lp~L~G~~~KMSkS~~nsaI~L~ 297 (405)
..+..+...+| +|||||.+| .|.+.
T Consensus 276 w~H~g~l~~~G--~KMSKSlGN-~i~~~ 300 (411)
T TIGR03447 276 YVHAGMIGLDG--EKMSKSLGN-LVFVS 300 (411)
T ss_pred EEECCEECcCC--CCccCcCCC-CCCHH
Confidence 33444556677 899999988 66653
No 143
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=58.58 E-value=39 Score=33.26 Aligned_cols=64 Identities=9% Similarity=0.149 Sum_probs=39.0
Q ss_pred CceeeecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCCCCceeccCCHHHHHHHhhc
Q psy13709 239 PCLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNK 309 (405)
Q Consensus 239 ~~lvp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k 309 (405)
|+..-.|..-.+...+-+.+++.++++ ...+..+.+..-+| ..||+= ..+|+....+....|.+
T Consensus 142 Pd~~~FG~kd~gq~~~Lk~~~~dl~~~-v~ii~~~~vr~~dG--laiSSR----N~~Ls~~~r~~A~~l~~ 205 (277)
T cd00560 142 PDRAYFGEKDAQQLAVIRRMVRDLNLP-VEIVGCPTVREEDG--LALSSR----NVYLSAEERKEALALYR 205 (277)
T ss_pred CCeEEECCCccccHHHHHHHHHHcCCe-EEEEcCCceecCCC--ceEeCC----CCCCCHHHHHHHHHHHH
Confidence 343335767777888889999998874 22233455444466 789854 45777665555444443
No 144
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=58.54 E-value=5.5 Score=44.97 Aligned_cols=51 Identities=24% Similarity=0.176 Sum_probs=28.9
Q ss_pred CceeeecCCch-HHHHHHHHHh---hhhC---CCCc--eeeecccccCCCCCCccCCCCCCCCceeccC
Q psy13709 239 PCLIPCAIDQD-PYFRLTRDVA---PKLG---YVKP--ALIHSTFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 239 ~~lvp~G~DQd-~~~~l~rdla---~r~~---~~kp--~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
.++...|.||. -|+-.+|-.. ..++ ...| .++++.++ |||||.+| .|...|
T Consensus 524 ~Dly~~G~D~~i~hL~y~Rf~~~~l~~~~~~~~~~Pfk~v~~~G~v--------KMSKS~GN-~i~p~~ 583 (805)
T PRK00390 524 VDQYIGGIEHAVLHLLYARFFTKVLRDLGLVSSDEPFKKLLTQGMV--------KMSKSKGN-VVDPDD 583 (805)
T ss_pred CcEEeccHHHHHHHHHHHHHHHHHHHHhhcccCCcchhhheecCcE--------EeCCCCCC-CCCHHH
Confidence 45667899994 3344444222 1122 2234 24455555 99999998 666544
No 145
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=58.02 E-value=93 Score=30.73 Aligned_cols=87 Identities=8% Similarity=0.132 Sum_probs=54.7
Q ss_pred ecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCCCCceeccCCHHHHHHHhhcccccCCccchhhhh
Q psy13709 244 CAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQATVEEHR 323 (405)
Q Consensus 244 ~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~~~~t~e~~~ 323 (405)
.|.--.|-+.+.|.+++-++++ ..++..|++-.-+| =-||+- .+||+.......--+.+
T Consensus 148 FGeKD~QQl~vIr~mV~DL~~~-VeIv~vptVRe~DG--LA~SSR----N~YLs~eeR~~A~~L~~-------------- 206 (285)
T COG0414 148 FGEKDYQQLAVIRRMVADLNLP-VEIVGVPTVREEDG--LALSSR----NVYLSAEERKAAPALYR-------------- 206 (285)
T ss_pred eccchHHHHHHHHHHHHHcCCC-eEEEecceeEcCCc--cchhhc----cccCCHHHHHHHHHHHH--------------
Confidence 4655666677888899988874 33455788888888 466643 46777654332222211
Q ss_pred hcCCCCchHHHHHHHHhccCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy13709 324 ELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTIT 374 (405)
Q Consensus 324 ~~ggn~~v~~~~~~l~~f~~~d~e~eei~~~~~~G~l~~~elK~~La~~i~ 374 (405)
.+...++.+.+|+..+..+++...+.|.
T Consensus 207 -----------------------~L~~~~~~~~~G~~~~~~i~~~~~~~L~ 234 (285)
T COG0414 207 -----------------------ALTAAAELAAGGERDPAKIIEAARQVLE 234 (285)
T ss_pred -----------------------HHHHHHHHHHcCCccHHHHHHHHHHHHH
Confidence 2345566677787777777766666554
No 146
>PLN02610 probable methionyl-tRNA synthetase
Probab=56.75 E-value=8.6 Score=43.45 Aligned_cols=51 Identities=20% Similarity=0.286 Sum_probs=29.9
Q ss_pred ecCCchHHHHHHH-HHhhhhC--CCCceeee-cccccCCCCCCccCCCCCCCCceeccC
Q psy13709 244 CAIDQDPYFRLTR-DVAPKLG--YVKPALIH-STFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 244 ~G~DQd~~~~l~r-dla~r~~--~~kp~~l~-~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
+|.|--.++.+-= -+.--.| ++.|..+. +-++ .+.| +|||||.+| .||..+
T Consensus 307 iGKDi~~fH~i~wPa~L~a~g~~~~~p~~i~~~g~l-~~eG--~KMSKS~GN-vV~p~~ 361 (801)
T PLN02610 307 MGKDNVPFHTVMFPSTLLGTGENWTMMKTISVTEYL-NYEG--GKFSKSKGV-GVFGND 361 (801)
T ss_pred EeeecchhHHHHHHHHHHhCCCCcCCCCEEEeccCE-ecCC--ceecCcCCc-ccCHHH
Confidence 6888777664321 1111123 33554444 4444 3566 899999988 888754
No 147
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=56.75 E-value=22 Score=40.18 Aligned_cols=96 Identities=15% Similarity=0.136 Sum_probs=53.2
Q ss_pred hhHHHHHHcCcccccCCHHHHHHHHhcCCCceeeeecC-CCCCCcchhhhHHH---HHHHHHHhcCCccEEEEecCccch
Q psy13709 63 KKVHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRG-PSSDSMHLGHLIPF---MFTKWLQDVFDVPLVIQLTDDEKS 138 (405)
Q Consensus 63 ~~~~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~-PT~~slHlGhli~~---~~~~~lQ~~~~~~v~I~i~D~e~~ 138 (405)
++.....+-++|..-.|.+. .+++++..=|= || |.||+||.-.. .+..++++.-|-.|.--+| +++|
T Consensus 13 KWQ~~W~e~~~Fe~~~d~~~-------~~Kfyvl~mfPYpS-G~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMG-wdaf 83 (814)
T COG0495 13 KWQKRWEEAKVFEADEDSDK-------PEKFYVLVMFPYPS-GALHVGHVRNYTIGDVIARYKRMQGYNVLHPMG-WDAF 83 (814)
T ss_pred HHHHHHHhcCCcccCCCCCC-------CCceEEEeCCCCCC-CCcccCccccccHHHHHHHHHHhcCCeecccCc-cccc
Confidence 34456666677765443221 14677666663 66 58999996654 3456677765554444343 2222
Q ss_pred h--------ccCCCH-HHHHHHHHHHHHHHHHcCCCCC
Q psy13709 139 L--------WKNIKP-EEAKKLAYENAKAIIACGFKQD 167 (405)
Q Consensus 139 l--------~~~lt~-e~i~~~~~~~~~~~~A~G~dp~ 167 (405)
= ..+.++ .=+..|...+.+++.++||.-+
T Consensus 84 GlPae~~A~~~~~~P~~wt~~ni~~~k~qlk~lG~siD 121 (814)
T COG0495 84 GLPAENAAIKIGTDPAKWTYYNIAYMKKQLKSLGFSID 121 (814)
T ss_pred CchHHHHHHHhCCChHHHHHHHHHHHHHHHHHhCCccc
Confidence 1 011222 2344555566777888998765
No 148
>PLN02946 cysteine-tRNA ligase
Probab=55.43 E-value=4.7 Score=43.53 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=19.2
Q ss_pred eeecccccCCCCCCccCCCCCCCCceeccC
Q psy13709 269 LIHSTFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 269 ~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
-+|+-+|. ++| +|||||.+| .|.+.|
T Consensus 311 W~H~G~v~-~~G--~KMSKSlGN-~itl~d 336 (557)
T PLN02946 311 WIHNGFVT-VDS--EKMSKSLGN-FFTIRQ 336 (557)
T ss_pred eeEeeEEE-eCC--CCcCCcCCC-cCCHHH
Confidence 46667776 677 899999988 666543
No 149
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=54.06 E-value=62 Score=37.00 Aligned_cols=60 Identities=15% Similarity=0.188 Sum_probs=35.1
Q ss_pred HHHHHHcCcccccCCHHHHHHHHhcCCCceeeeecCCCCCCcchhhhHHHH---HHHHHHhcCCccEEEEec
Q psy13709 65 VHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFM---FTKWLQDVFDVPLVIQLT 133 (405)
Q Consensus 65 ~~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~PT~~slHlGhli~~~---~~~~lQ~~~~~~v~I~i~ 133 (405)
.....+.|+|.... .++++|.+.+|.==..|.||+||.+... ++.++++.-|..+...-|
T Consensus 19 ~~~W~~~~~f~~~~---------~~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G 81 (874)
T PRK05729 19 YQKWEEKGYFKPDD---------NSKKPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPG 81 (874)
T ss_pred HHHHHHCCCcccCc---------CCCCCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCC
Confidence 34667788876532 1356666666553234699999988753 334455554544444334
No 150
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=48.44 E-value=12 Score=39.89 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=18.3
Q ss_pred eeecccccCCCCCCccCCCCCCCCceeccC
Q psy13709 269 LIHSTFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 269 ~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
-+|+-++ ...| +|||||.+| .|++.|
T Consensus 267 w~h~g~l-~~~g--~KMSKSlGN-~itl~d 292 (490)
T PRK14536 267 WLHHEFL-LMNK--GKMSKSAGQ-FLTLSS 292 (490)
T ss_pred EEEcCEE-eecC--ccccccCCC-cccHHH
Confidence 3444444 4677 899999998 888744
No 151
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=48.17 E-value=1.4e+02 Score=34.49 Aligned_cols=62 Identities=11% Similarity=0.144 Sum_probs=34.3
Q ss_pred HHHHHcCcccccCCHHHHHHHHhcCCCceeeeecCCCCCCcchhhhHHHH---HHHHHHhcCCccEEEEec
Q psy13709 66 HHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFM---FTKWLQDVFDVPLVIQLT 133 (405)
Q Consensus 66 ~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~PT~~slHlGhli~~~---~~~~lQ~~~~~~v~I~i~ 133 (405)
....+.+++....+. -+.+++|++..|.==..|.||+||.+... +..++++.-|..+....|
T Consensus 30 ~~W~~~~~~~~~~~~------~~~~~~f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G 94 (912)
T PRK05743 30 KRWEENDLYQKIREA------NKGKPKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPG 94 (912)
T ss_pred HHHHHCCCccccchh------cCCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCC
Confidence 345566776543211 12244577777764335699999988753 234466654554444444
No 152
>PLN02381 valyl-tRNA synthetase
Probab=47.23 E-value=41 Score=39.41 Aligned_cols=61 Identities=11% Similarity=0.131 Sum_probs=38.5
Q ss_pred HHHHHHcCcccccCCHHHHHHHHhcCCCceeeeecCCCCCCcchhhhHHHH---HHHHHHhcCCccEEEEec
Q psy13709 65 VHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFM---FTKWLQDVFDVPLVIQLT 133 (405)
Q Consensus 65 ~~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~PT~~slHlGhli~~~---~~~~lQ~~~~~~v~I~i~ 133 (405)
.....+.|+|....+ ..+++|++.+|.==..|.||+||..... ++.++++.-|..+....|
T Consensus 110 ~~~W~~~~~f~~~~~--------~~~~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G 173 (1066)
T PLN02381 110 YAWWEKSGYFGADAK--------SSKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPG 173 (1066)
T ss_pred HHHHHHCCCccCCcc--------CCCCcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCC
Confidence 446777888865321 2355688888875445799999988753 344466655555555444
No 153
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=46.63 E-value=41 Score=39.00 Aligned_cols=65 Identities=15% Similarity=0.151 Sum_probs=37.5
Q ss_pred HHHHHHcCcccccCCHHHHHHHHhcCCCceeeeecCCCCCCcchhhhHHHH---HHHHHHhcCCccEEEEec
Q psy13709 65 VHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFM---FTKWLQDVFDVPLVIQLT 133 (405)
Q Consensus 65 ~~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~PT~~slHlGhli~~~---~~~~lQ~~~~~~v~I~i~ 133 (405)
.....+.|+|....+.+. -..+++|++.+|.==..|.||+||.+... ++.++++.-|..|....|
T Consensus 38 ~~~W~~~~~f~~~~~~~~----~~~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G 105 (995)
T PTZ00419 38 YEWWEKSGFFKPAEDAKS----LNSGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPG 105 (995)
T ss_pred HHHHHHCCCcccCccccc----cCCCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCC
Confidence 346677888765321000 02345577777764334699999988753 344566655555555444
No 154
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=46.54 E-value=37 Score=38.33 Aligned_cols=60 Identities=18% Similarity=0.247 Sum_probs=35.5
Q ss_pred HHHHHHcCcccccCCHHHHHHHHhcCCCceeeeec-CCCCCCcchhhhHHHH---HHHHHHhcCCccEEEEec
Q psy13709 65 VHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGR-GPSSDSMHLGHLIPFM---FTKWLQDVFDVPLVIQLT 133 (405)
Q Consensus 65 ~~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~-~PT~~slHlGhli~~~---~~~~lQ~~~~~~v~I~i~ 133 (405)
.....+.|+|....+ ..++++.+.+|. -|+ |.|||||+.... +..++++.-|..|....|
T Consensus 20 ~~~W~~~~~f~~~~~--------~~~~~f~i~~ppPy~n-G~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G 83 (800)
T PRK13208 20 QKIWEEEGTYKFDPD--------ERKPVYSIDTPPPTVS-GSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQG 83 (800)
T ss_pred HHHHHHCCCcccccc--------cCCCcEEEecCcCCCC-CCccHHHHHhHHHHHHHHHHHHcCCCcccCCCC
Confidence 345667787764321 124567777754 344 689999988754 344456655555555444
No 155
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=45.86 E-value=88 Score=28.66 Aligned_cols=69 Identities=17% Similarity=0.253 Sum_probs=39.8
Q ss_pred eeeecCCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCcc--chhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEe
Q psy13709 95 LYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDE--KSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIF 172 (405)
Q Consensus 95 iytG~~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e--~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~kt~i~ 172 (405)
+|.|+= ..+|+||+..+. .-++. .+ .++|+|+... +......+.++-.++.+..+. ..|++.+++.|.
T Consensus 3 l~~GrF---~P~H~GHl~~i~--~a~~~-~~-~vii~i~s~~~~~~~~~p~~~~eR~~mi~~~~~---~~~~~~~rv~i~ 72 (181)
T cd02168 3 VYIGRF---QPFHNGHLAVVL--IALEK-AK-KVIILIGSARTARNIKNPWTSEEREVMIEAALS---DAGADLARVHFR 72 (181)
T ss_pred EEeecc---CCCCHHHHHHHH--HHHHH-CC-eEEEEeCCCCCCCCCCCCcCHHHHHHHHHHHHh---ccCCCcceEEEE
Confidence 555543 358999987753 22443 45 5677676542 111123567776666544332 348888888766
Q ss_pred e
Q psy13709 173 S 173 (405)
Q Consensus 173 ~ 173 (405)
.
T Consensus 73 p 73 (181)
T cd02168 73 P 73 (181)
T ss_pred e
Confidence 5
No 156
>KOG1148|consensus
Probab=45.77 E-value=80 Score=34.48 Aligned_cols=111 Identities=18% Similarity=0.323 Sum_probs=54.0
Q ss_pred HHHHH-HHhc-CCCceeeeecCCC-CCCcchhhhHHHHHHHH-HHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHH
Q psy13709 81 HSILN-LYEQ-GKPFFLYTGRGPS-SDSMHLGHLIPFMFTKW-LQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENA 156 (405)
Q Consensus 81 ~~ll~-~~~~-~~~~~iytG~~PT-~~slHlGhli~~~~~~~-lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~ 156 (405)
.++++ .++. |. .++|-|=|- -|-|||||.=.+. .++ +.++.|...++-. |++ -+..+-.++ .+-|
T Consensus 235 ~ellk~HL~~TGG--kV~TRFPPEPNG~LHIGHaKAIn-vNFgyAk~~~G~cyLRf-DDT------NPEkEee~y-f~sI 303 (764)
T KOG1148|consen 235 EELLKEHLERTGG--KVVTRFPPEPNGILHIGHAKAIN-VNFGYAKAHGGVCYLRF-DDT------NPEKEEEEY-FESI 303 (764)
T ss_pred HHHHHHHHHhhCC--eeEEeCCCCCCceeeecchhhee-echhhhhhhCCeEEEec-CCC------CcchhhHHH-HHHH
Confidence 44444 4433 44 377777443 2599999987764 344 5555444444432 321 111122222 2334
Q ss_pred HHHHH-cCCCCCceEEeeCccccChHHHHHHHHHHh-------hhCHHHHHHHhCCC
Q psy13709 157 KAIIA-CGFKQDSTFIFSDIDFMNPSFYLNILKIQK-------LVNGTTVKAIFGLK 205 (405)
Q Consensus 157 ~~~~A-~G~dp~kt~i~~ns~~~~~~~~~~v~~l~~-------~~t~~~~~~~~g~~ 205 (405)
+++.+ +|++|=|+ -..|||. ..+|..+..|-+ +.+.++++.+-|++
T Consensus 304 ~e~V~WLG~~P~kv--TysSDyF-dqLy~~av~LIrkG~AYVcHqt~eEik~~rg~~ 357 (764)
T KOG1148|consen 304 KEMVAWLGFEPYKV--TYSSDYF-DQLYELAVELIRKGKAYVCHQTAEEIKERRGFN 357 (764)
T ss_pred HHHHHHhCCCceee--ecchhHH-HHHHHHHHHHHhcCceeEEeccHHHHHhhcCCC
Confidence 44333 59998553 3344554 334444433322 24556666544543
No 157
>KOG3042|consensus
Probab=44.60 E-value=2.9e+02 Score=26.45 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=16.7
Q ss_pred eeecCCCCCCcchhhhHHHH
Q psy13709 96 YTGRGPSSDSMHLGHLIPFM 115 (405)
Q Consensus 96 ytG~~PT~~slHlGhli~~~ 115 (405)
-.||=||-|-||=||+--..
T Consensus 25 tIgfVPTMG~LHeGH~SLvr 44 (283)
T KOG3042|consen 25 TIGFVPTMGCLHEGHASLVR 44 (283)
T ss_pred eEEEecccccccccHHHHHH
Confidence 35999999999999987654
No 158
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=39.36 E-value=17 Score=38.67 Aligned_cols=27 Identities=33% Similarity=0.506 Sum_probs=19.0
Q ss_pred eeeecccccCCCCCCccCCCCCCCCceeccC
Q psy13709 268 ALIHSTFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 268 ~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
.-+|+-++ .+.| +|||||.+| .|+|.|
T Consensus 266 ~W~H~g~l-~~~g--~KMSKSlGN-~i~l~d 292 (481)
T PRK14534 266 MFVHGEFL-IMEY--EKMSKSNNN-FITIKD 292 (481)
T ss_pred EEEEecEE-EecC--ceecccCCC-cccHHH
Confidence 34455555 3566 899999998 888844
No 159
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=38.70 E-value=11 Score=41.56 Aligned_cols=36 Identities=31% Similarity=0.386 Sum_probs=23.6
Q ss_pred eeeecccccCCCCCCccCCCCCCCCceeccC-----CHHHHHHHh
Q psy13709 268 ALIHSTFFPALQGANTKMSASDLNSAIFLTD-----TPKQVKNKV 307 (405)
Q Consensus 268 ~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D-----~p~~i~~KI 307 (405)
..+|+.+| .+.| .|||||.+| .|.+.| +++.+|==+
T Consensus 302 y~~H~G~L-~i~G--~KMSKSLGN-fItp~dlLekygaDaLR~~l 342 (651)
T PTZ00399 302 YFLHSGHL-HIKG--LKMSKSLKN-FITIRQALSKYTARQIRLLF 342 (651)
T ss_pred EEEEEEEE-Eecc--chhhhcCCC-cccHHHHHHHcChHHHHHHH
Confidence 45565664 3566 899999998 887765 445554433
No 160
>KOG0435|consensus
Probab=37.92 E-value=71 Score=35.43 Aligned_cols=60 Identities=17% Similarity=0.256 Sum_probs=38.2
Q ss_pred HHHHHHcCcccccCCHHHHHHHHhcCCCceeeeecC-CCCCCcchhhhHH---HHHHHHHHhcCCccEEEEec
Q psy13709 65 VHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRG-PSSDSMHLGHLIP---FMFTKWLQDVFDVPLVIQLT 133 (405)
Q Consensus 65 ~~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~-PT~~slHlGhli~---~~~~~~lQ~~~~~~v~I~i~ 133 (405)
=+....+|..+.. +.-.++++ ||++=|= || |.||+||... ...+.+||+.-|-.|+=-+|
T Consensus 39 W~~~~~~~~~~~~-------~~d~sk~K-YiLsMFPYPS-G~LHiGHvRVYTIsD~laRf~rm~GynVihPMG 102 (876)
T KOG0435|consen 39 WKQYLKDGFPFSK-------DSDKSKKK-YILSMFPYPS-GALHIGHVRVYTISDILARFYRMKGYNVIHPMG 102 (876)
T ss_pred HHHHHhcCCcccc-------ccccCCCc-eEEEecCCCC-CcccccceEEEEehHHHHHHHHhcCceeecCCc
Confidence 4567778888864 12233545 8888884 77 5899999654 34567788865544433343
No 161
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=36.90 E-value=20 Score=40.77 Aligned_cols=51 Identities=25% Similarity=0.182 Sum_probs=28.3
Q ss_pred eeeecCCchHHHHHHHHHhhh--hCCCCce--eeecccccCCCCCCccCCCCCCCCcee
Q psy13709 241 LIPCAIDQDPYFRLTRDVAPK--LGYVKPA--LIHSTFFPALQGANTKMSASDLNSAIF 295 (405)
Q Consensus 241 lvp~G~DQd~~~~l~rdla~r--~~~~kp~--~l~~~~lp~L~G~~~KMSkS~~nsaI~ 295 (405)
+.+.|-|=-.+. .+|-+... +....|. +..+.++-.-+| .|||||.+| .|-
T Consensus 481 llvtG~DIIffW-varmi~~~~~~~~~~PFk~V~ihGLVrDe~G--~KMSKS~GN-vID 535 (877)
T COG0525 481 LLVTGHDIIFFW-VARMIMRGLHLTGEVPFKDVYIHGLVRDEQG--RKMSKSKGN-VID 535 (877)
T ss_pred cccccchhhHHH-HHHHHHHHHHhcCCCCccEEEEeeeEEcCCC--CCCcccCCC-cCC
Confidence 334565544433 33433333 2334553 233566666666 999999998 663
No 162
>KOG0434|consensus
Probab=36.62 E-value=23 Score=39.19 Aligned_cols=84 Identities=23% Similarity=0.207 Sum_probs=46.3
Q ss_pred CCCCccccchhhhhhhcCCCcCchhhhhccCCCCCceeeecCCchHHHHHHHHHhhhhCCCCce---eeecccccCCCCC
Q psy13709 205 KDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGYVKPA---LIHSTFFPALQGA 281 (405)
Q Consensus 205 ~~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~lvp~G~DQd~~~~l~rdla~r~~~~kp~---~l~~~~lp~L~G~ 281 (405)
+.++.++...||.=-- -. |.+=| -++.|.-|.||..-.-.|--+....-+.+|. ++.+.++.+-+|
T Consensus 531 SGSMPYAq~HyPFenk-~~----fe~~f-----PadFIaEGlDQTRGWFYTL~VlsT~LF~kppfkNvIvnGlVLAeDG- 599 (1070)
T KOG0434|consen 531 SGSMPYAQRHYPFENK-EE----FEENF-----PADFIAEGLDQTRGWFYTLLVLSTALFGKPPFKNVIVNGLVLAEDG- 599 (1070)
T ss_pred cCCCcchhhcCCccch-HH----HhhcC-----chHhhhhccccccchhhHHHHHHHHHcCCCcchheeEeeeEEeccc-
Confidence 4577788877775321 11 21211 1455667999954332232233222232332 455777888888
Q ss_pred CccCCCCCCCCceeccCCHHHHHH
Q psy13709 282 NTKMSASDLNSAIFLTDTPKQVKN 305 (405)
Q Consensus 282 ~~KMSkS~~nsaI~L~D~p~~i~~ 305 (405)
+||||+..| | .+|..|-+
T Consensus 600 -~KMSKrlkN---Y--PdP~~iin 617 (1070)
T KOG0434|consen 600 -KKMSKRLKN---Y--PDPSLIIN 617 (1070)
T ss_pred -HHHhhhhhc---C--CCHHHHHH
Confidence 899999876 2 34555533
No 163
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=36.19 E-value=3.2e+02 Score=27.04 Aligned_cols=64 Identities=11% Similarity=0.195 Sum_probs=43.6
Q ss_pred CceeeecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCCCCceeccCCHHHHHHHhhc
Q psy13709 239 PCLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNK 309 (405)
Q Consensus 239 ~~lvp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k 309 (405)
|+..-.|.--+|-+.+.|.+++.++++ ..++-.|++---+| ==||+= ..||+....+....|.+
T Consensus 144 P~~a~FGeKD~QQl~vIrrmv~dL~~~-v~I~~~ptvRe~dG--LA~SSR----N~~Ls~~eR~~A~~l~~ 207 (282)
T TIGR00018 144 PDVAYFGEKDAQQLAVIRKLVADLFLD-IEIVPVPIVREEDG--LALSSR----NVYLTAEQRKIAPGLYR 207 (282)
T ss_pred CCeeEecccHHHHHHHHHHHHHHcCCC-ceEEEeCceECCCC--Cchhhc----cccCCHHHHHHHHHHHH
Confidence 455556767777788889999999874 34455788888787 577743 45777766555544444
No 164
>PLN02943 aminoacyl-tRNA ligase
Probab=36.12 E-value=60 Score=37.59 Aligned_cols=59 Identities=19% Similarity=0.268 Sum_probs=35.7
Q ss_pred HHHHHcCcccccCCHHHHHHHHhcCCCceeeee-cCCCCCCcchhhhHHHH---HHHHHHhcCCccEEEEec
Q psy13709 66 HHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTG-RGPSSDSMHLGHLIPFM---FTKWLQDVFDVPLVIQLT 133 (405)
Q Consensus 66 ~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG-~~PT~~slHlGhli~~~---~~~~lQ~~~~~~v~I~i~ 133 (405)
....+.|+|....+ .++++|.+.+| =-+| |.||+||.+... ++.++++.-|..+....|
T Consensus 71 ~~W~~~~~f~~~~~--------~~~~~f~i~~pPP~~t-G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G 133 (958)
T PLN02943 71 NWWESQGYFKPNFD--------RGGDPFVIPMPPPNVT-GSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPG 133 (958)
T ss_pred HHHHHCCCcccCcc--------cCCCCEEEecCCCCCC-CchhHHHHHHHHHHHHHHHHHHhcCCeeecCCC
Confidence 45667788765432 23566777777 4566 599999988753 233455544544444434
No 165
>PLN02843 isoleucyl-tRNA synthetase
Probab=33.79 E-value=98 Score=35.94 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=33.1
Q ss_pred HHHHcCcccccCCHHHHHHHHhcCCCceeeeecCCCCCCcchhhhHHHH---HHHHHHhcCCccEEE
Q psy13709 67 HLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFM---FTKWLQDVFDVPLVI 130 (405)
Q Consensus 67 ~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~PT~~slHlGhli~~~---~~~~lQ~~~~~~v~I 130 (405)
...+.|++....+. +++++|.+..|.==..|.|||||.+... ++.++++.-|..+..
T Consensus 15 ~W~~~~~y~~~~~~-------~~~~~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~ 74 (974)
T PLN02843 15 LWEENQVYKRVSDR-------NNGESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHY 74 (974)
T ss_pred HHHHCCCccccccc-------cCCCCEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCcccc
Confidence 45566777653321 2366777777764334699999998754 233455544444433
No 166
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=33.40 E-value=37 Score=39.64 Aligned_cols=62 Identities=16% Similarity=0.194 Sum_probs=37.4
Q ss_pred HHHHHHcCcccccCCHHHHHHHHhcCCCceeeeecCCCCCCcchhhhHHHH---HHHHHHhcCCccEEEEec
Q psy13709 65 VHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFM---FTKWLQDVFDVPLVIQLT 133 (405)
Q Consensus 65 ~~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~PT~~slHlGhli~~~---~~~~lQ~~~~~~v~I~i~ 133 (405)
.....+.|+|..... + +.+.+|+++.|.==..|.||+||.+... ++.++++.-|..|....|
T Consensus 29 ~~~W~~~~~f~~~~~-~------~~~~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G 93 (1052)
T PRK14900 29 YPFWQERGYFHGDEH-D------RTRPPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPG 93 (1052)
T ss_pred HHHHHHCCCccCCcc-c------CCCCCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCC
Confidence 346667788765211 0 2356688888875445799999988753 334466654554444444
No 167
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=33.32 E-value=1.8e+02 Score=29.23 Aligned_cols=70 Identities=17% Similarity=0.266 Sum_probs=38.4
Q ss_pred CceeeeecCCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCc-c-chhccCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q psy13709 92 PFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDD-E-KSLWKNIKPEEAKKLAYENAKAIIACGFKQDST 169 (405)
Q Consensus 92 ~~~iytG~~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~-e-~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~kt 169 (405)
.+.+|.|+- ..+|+||+..+ ++..+..+ .++|+++.. . ....+..+.++-.++.+. .++ +++..++
T Consensus 7 ~~~~~~G~F---~P~H~GHl~~i---~~a~~~~d-~l~v~i~s~~~~~~~~~~~~~~~R~~mi~~----~~~-~~~~~r~ 74 (340)
T PRK05379 7 DYLVFIGRF---QPFHNGHLAVI---REALSRAK-KVIVLIGSADLARSIKNPFSFEERAQMIRA----ALA-GIDLARV 74 (340)
T ss_pred eEEEEeecc---CCCCHHHHHHH---HHHHHHCC-EEEEEEccCCCCCcCCCCCCHHHHHHHHHH----Hhh-cCCCceE
Confidence 456788855 45899998765 33333334 466767632 1 112223566665555433 333 6666666
Q ss_pred EEee
Q psy13709 170 FIFS 173 (405)
Q Consensus 170 ~i~~ 173 (405)
.|..
T Consensus 75 ~~~p 78 (340)
T PRK05379 75 TIRP 78 (340)
T ss_pred EEEE
Confidence 5553
No 168
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=32.87 E-value=97 Score=22.61 Aligned_cols=49 Identities=24% Similarity=0.395 Sum_probs=28.8
Q ss_pred cccCCccchhhhhhcCCCCchHHHHHHHHhccCChhhHHHHHHHHhcCCCCHHHHHHHHH
Q psy13709 311 AYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILI 370 (405)
Q Consensus 311 A~t~~~~t~e~~~~~ggn~~v~~~~~~l~~f~~~d~e~eei~~~~~~G~l~~~elK~~La 370 (405)
..++|+..++ |-...+..++.++. .....++|.++|.+ +...+++.+|+
T Consensus 6 ~~~~G~P~i~-----GTRI~v~~i~~~~~----~G~s~eeI~~~yp~--Lt~~~i~aAl~ 54 (56)
T PF04255_consen 6 DILGGQPVIR-----GTRIPVRDILDLLA----AGESPEEIAEDYPS--LTLEDIRAALA 54 (56)
T ss_dssp TSGGG--EET-----TSS-BHHHHHHHHH----TT--HHHHHHHSTT----HHHHHHHHH
T ss_pred cccCCcceEc-----CceecHHHHHHHHH----cCCCHHHHHHHCCC--CCHHHHHHHHH
Confidence 3456666553 44566666666553 56789999999975 88888888775
No 169
>TIGR03044 PS_II_psb27 photosystem II protein Psb27. Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single model families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.
Probab=31.51 E-value=62 Score=28.46 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=24.8
Q ss_pred HHhhCCCCCCHHHHHHHHHHhhhhHHHHHHcC
Q psy13709 41 IKKFGSSKIDDELIARFEKVTNKKVHHLLRRG 72 (405)
Q Consensus 41 ~~~fg~~~i~~~~~~r~~~~~~~~~~~l~~RG 72 (405)
-..||..||.+++.+||++-..+ ....+.||
T Consensus 105 Y~sy~~rPlPeklk~Rl~~El~~-AE~al~Rg 135 (135)
T TIGR03044 105 YKSYANRPLPEKLKERLEKELKK-AEKALLRG 135 (135)
T ss_pred hccCCCCCCCHHHHHHHHHHHHH-HHHHHhcC
Confidence 35689999999999999987665 66666665
No 170
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=29.98 E-value=87 Score=36.33 Aligned_cols=63 Identities=17% Similarity=0.252 Sum_probs=36.4
Q ss_pred HHHHHHcCcccccCCHHHHHHHHhcCCCceeeeecCCCCCCcchhhhHHHH---HHHHHHhcCCccEEEEec
Q psy13709 65 VHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFM---FTKWLQDVFDVPLVIQLT 133 (405)
Q Consensus 65 ~~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~PT~~slHlGhli~~~---~~~~lQ~~~~~~v~I~i~ 133 (405)
.....+.++|....+.+ +.+++|+++.|.==..|.||+||.+... +..++++.-|..|.-..|
T Consensus 21 ~~~W~~~~~f~~~~~~~------~~~~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~G 86 (975)
T PRK06039 21 LKFWKENDIFEKSIENR------EGGPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAG 86 (975)
T ss_pred HHHHHHCCCcccCcccc------CCCCCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCC
Confidence 34566678776432111 2356688888874334699999988753 234455544444433333
No 171
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=29.35 E-value=3.8e+02 Score=28.86 Aligned_cols=64 Identities=11% Similarity=0.146 Sum_probs=44.0
Q ss_pred CceeeecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCCCCceeccCCHHHHHHHhhc
Q psy13709 239 PCLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNK 309 (405)
Q Consensus 239 ~~lvp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k 309 (405)
|+..-.|.--.|-+.+.|.+++.++++ ..++-.|++---+| ==||+= ..+|++...+..-.|.+
T Consensus 142 P~~a~fGeKD~QQl~vir~mv~dL~~~-v~i~~~ptvRe~dG--LA~SSR----N~~Ls~~~r~~A~~l~~ 205 (512)
T PRK13477 142 PKRAYFGEKDWQQLAIIRRLVADLNLP-VTIVGCPTVREADG--LALSSR----NQYLSAEERQQAAALYR 205 (512)
T ss_pred CCeeeecccHHHHHHHHHHHHHHcCCC-ceEEecCceECCCC--chhhhh----cccCCHHHHHHHHHHHH
Confidence 455556766677778889999999884 33455788888787 577743 46787776555555544
No 172
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=28.82 E-value=1e+02 Score=29.65 Aligned_cols=65 Identities=22% Similarity=0.112 Sum_probs=37.7
Q ss_pred CCCceeee-ecCCCCCCcchhhhHHH----HHHHHHHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHH
Q psy13709 90 GKPFFLYT-GRGPSSDSMHLGHLIPF----MFTKWLQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAI 159 (405)
Q Consensus 90 ~~~~~iyt-G~~PT~~slHlGhli~~----~~~~~lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~ 159 (405)
+.|-.-++ |+++|.||| ||-+++ -+-..+.. ....|+++++|-|- .....||-+...+...+-.+
T Consensus 104 ~Hp~~~~~pgve~stGSL--GqGLsvavGmAlg~kl~~-~~~~VyvilGDGEl--~EG~~WEAam~Aah~~L~NL 173 (243)
T COG3959 104 GHPERNKTPGVEVSTGSL--GQGLSVAVGMALGAKLKG-SPYRVYVILGDGEL--DEGQVWEAAMTAAHYKLDNL 173 (243)
T ss_pred CCCccCCCCceeecCCcc--cccchHHHHHHHHHhhcC-CCceEEEEecCccc--ccccHHHHHHHHHHhccCcE
Confidence 55666677 999998875 554432 22223433 35678888999762 22345666665554444333
No 173
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=27.70 E-value=33 Score=28.00 Aligned_cols=43 Identities=26% Similarity=0.200 Sum_probs=27.4
Q ss_pred eecCCchHHHHHHHH--HhhhhCCCCceeeecccccCCCCCCccCCCCC
Q psy13709 243 PCAIDQDPYFRLTRD--VAPKLGYVKPALIHSTFFPALQGANTKMSASD 289 (405)
Q Consensus 243 p~G~DQd~~~~l~rd--la~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~ 289 (405)
.+|.|+.+.+++-+. .-+.++ +.|..+..+..+ +++ ..||||.
T Consensus 61 ~~G~~~~~~~~~e~~~~~n~~l~-~~~e~v~~~~~~-~~~--~~iSSs~ 105 (105)
T cd02156 61 VCGEDFQQNRELYRWVKDNITLP-VDPEQVELPRLN-LET--TVMSKRK 105 (105)
T ss_pred HHHhhhhhchhHHHHHHHhcCCC-CCCeEEEccccc-cCc--eeeccCC
Confidence 468888888888775 112222 345556655555 556 7999984
No 174
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=27.06 E-value=42 Score=34.53 Aligned_cols=44 Identities=18% Similarity=0.129 Sum_probs=34.4
Q ss_pred HHHHHHHhhhhCCCCceeeecc---cccCCCCCCccCCCCCC--CCceec
Q psy13709 252 FRLTRDVAPKLGYVKPALIHST---FFPALQGANTKMSASDL--NSAIFL 296 (405)
Q Consensus 252 ~~l~rdla~r~~~~kp~~l~~~---~lp~L~G~~~KMSkS~~--nsaI~L 296 (405)
..++|++..+..+..|..++.+ ..+|.++ ++|||.|.+ +++||+
T Consensus 195 ~dLar~~~~~~~~~~t~pLl~~~dg~KmgKS~-~~~i~l~~~~~~~~i~~ 243 (377)
T TIGR00234 195 RDLIRRNLPSLGFGLTVPLLTPADGEKMGKSG-GGAVSLDEGKYDFYQFW 243 (377)
T ss_pred HHHHHHhcCCCceeeceeeecCCCCCCccCCC-CCcccCCccHhhhhhhh
Confidence 4688888887777777767665 7888876 379999988 678887
No 175
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=25.90 E-value=4.3e+02 Score=24.72 Aligned_cols=57 Identities=19% Similarity=0.332 Sum_probs=33.7
Q ss_pred ceeeeecCCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecC--ccchhccCCCHHHHHHHHHHHH
Q psy13709 93 FFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTD--DEKSLWKNIKPEEAKKLAYENA 156 (405)
Q Consensus 93 ~~iytG~~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D--~e~~l~~~lt~e~i~~~~~~~~ 156 (405)
+.+|.|+- ..+|+||+-.+. .-+.++ + .++|.||- ......+..|+.+-....+..+
T Consensus 6 ~~v~iGRF---QPfH~GHl~~I~--~al~~~-d-evII~IGSA~~s~t~~NPFTa~ER~~MI~~aL 64 (196)
T PRK13793 6 YLVFIGRF---QPFHLAHMQTIE--IALQQS-R-YVILALGSAQMERNIKNPFLAIEREQMILSNF 64 (196)
T ss_pred EEEEEecC---CCCcHHHHHHHH--HHHHhC-C-EEEEEEccCCCCCCCCCCCCHHHHHHHHHHhc
Confidence 46888875 348999986652 335554 3 56777764 2233334577766655544433
No 176
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.09 E-value=56 Score=37.30 Aligned_cols=31 Identities=13% Similarity=0.290 Sum_probs=19.0
Q ss_pred CCCCcchhhhHHHH---HHHHHHhcCCccEEEEec
Q psy13709 102 SSDSMHLGHLIPFM---FTKWLQDVFDVPLVIQLT 133 (405)
Q Consensus 102 T~~slHlGhli~~~---~~~~lQ~~~~~~v~I~i~ 133 (405)
| |+||+||.+..- ++.++++.-|..+..+-|
T Consensus 45 T-G~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG 78 (877)
T COG0525 45 T-GSLHMGHALNYTLQDILARYKRMRGYNVLWPPG 78 (877)
T ss_pred C-CcccchhhhhHHHHHHHHHHHHcCCCeeecCCC
Confidence 5 599999988643 344555544554544434
No 177
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=24.68 E-value=67 Score=36.62 Aligned_cols=62 Identities=16% Similarity=0.211 Sum_probs=35.8
Q ss_pred HHHHHcCcccccCCHHHHHHHHhcCCCceeeeecCCCCCCcchhhhHHHH---HHHHHHhcCCccEEEEec
Q psy13709 66 HHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFM---FTKWLQDVFDVPLVIQLT 133 (405)
Q Consensus 66 ~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~PT~~slHlGhli~~~---~~~~lQ~~~~~~v~I~i~ 133 (405)
....+++++.... +.-+.+++|+++.|.==..|.||+||.+... +..++++.-|..|....|
T Consensus 17 ~~W~~~~~f~~~~------~~~~~~~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G 81 (861)
T TIGR00392 17 AFWQENDIFEKVK------KLNKGKPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPG 81 (861)
T ss_pred HHHHHCCchhhhh------hccCCCCCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCC
Confidence 3556677765422 1112355688888883225699999988753 344466654544444344
No 178
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=23.72 E-value=92 Score=36.01 Aligned_cols=56 Identities=20% Similarity=0.264 Sum_probs=33.8
Q ss_pred HHHHHcCcccccCCHHHHHHHHhcCCCceeeeecCCCCCCcchhhhHHHH---HHHHHHhcCCccEEE
Q psy13709 66 HHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFM---FTKWLQDVFDVPLVI 130 (405)
Q Consensus 66 ~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~PT~~slHlGhli~~~---~~~~lQ~~~~~~v~I 130 (405)
....+.|+|....+ ++++|++..|.==..|.||+||..... +..++|+.-|..+..
T Consensus 9 ~~W~~~~~fe~~~~---------~~~kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~ 67 (938)
T TIGR00395 9 KRWEEAHIFEADPD---------DREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLF 67 (938)
T ss_pred HHHHhCCCcccCCC---------CCCceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCC
Confidence 35556777765321 145677766664335699999988753 345566654554443
No 179
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=23.57 E-value=89 Score=33.84 Aligned_cols=41 Identities=17% Similarity=0.244 Sum_probs=25.3
Q ss_pred eeeecCCCCCCcchhhhHHHH----HHHHHHhcCCccEEE-EecCcc
Q psy13709 95 LYTGRGPSSDSMHLGHLIPFM----FTKWLQDVFDVPLVI-QLTDDE 136 (405)
Q Consensus 95 iytG~~PT~~slHlGhli~~~----~~~~lQ~~~~~~v~I-~i~D~e 136 (405)
=|++=-|++ .||+||+-..+ +.+++.-.|+..+.. -|+|+=
T Consensus 117 e~~spn~~~-~~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~G 162 (566)
T TIGR00456 117 EFSSANPAG-PLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDWG 162 (566)
T ss_pred EecCCCCCC-CCchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecchH
Confidence 467777885 89999988765 234455444332222 278863
No 180
>PF03568 Peptidase_C50: Peptidase family C50; InterPro: IPR005314 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C50 (separase family, clan CD). The active site residues for members of this family and family C14 occur in the same order in the sequence: H,C. The separases are caspase-like proteases, which plays a central role in the chromosome segregation. In yeast they cleave the rad21 subunit of the cohesin complex at the onset of anaphase. During most of the cell cycle, separase is inactivated by the securin/cut2 protein, which probably covers its active site. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0005634 nucleus
Probab=22.78 E-value=1.6e+02 Score=30.30 Aligned_cols=61 Identities=20% Similarity=0.228 Sum_probs=45.8
Q ss_pred HcCcccccCCHHHHHHHHhcCCCceeeeecCCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCccchhc
Q psy13709 70 RRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLW 140 (405)
Q Consensus 70 ~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e~~l~ 140 (405)
|+|++-..-..+++++++. ...+++|+|-+ +| .+|+.- +-+|+.-.+++++++|-.++.+.
T Consensus 289 w~g~~g~~P~~~e~~~~l~-~~dlf~Y~GHG-~G-----~qy~~~---~~i~~~~~~~~~lL~GCsS~~l~ 349 (383)
T PF03568_consen 289 WKGIIGRAPTEEEFLQALT-SSDLFLYCGHG-SG-----EQYISG---STIQRLDCCAVSLLMGCSSGRLK 349 (383)
T ss_pred CCceECCCCCHHHHHHHHH-hCCeEEEecCC-cH-----HHhCCH---hhhccccccCceEEecCCccccc
Confidence 9999988888999999997 56799999998 43 234432 33555556888999998777653
No 181
>KOG1149|consensus
Probab=22.53 E-value=1.6e+02 Score=31.01 Aligned_cols=46 Identities=17% Similarity=0.334 Sum_probs=33.0
Q ss_pred hhhCCCCceeeecccccCCCCCCccCCCCCCCCceeccC------CHHHHHHHhhc
Q psy13709 260 PKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTD------TPKQVKNKVNK 309 (405)
Q Consensus 260 ~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D------~p~~i~~KI~k 309 (405)
+-||.++|-..|-|+|..-+| +|.||-.++ +++.+ =|+.+-+-|..
T Consensus 259 kAfgW~pPkFaHlpLl~n~d~--sKLSKRqgD--~~vs~~~e~G~LPeallN~ial 310 (524)
T KOG1149|consen 259 KAFGWQPPKFAHLPLLLNPDG--SKLSKRQGD--ASVSHYREQGYLPEALLNYIAL 310 (524)
T ss_pred HHhCCCCCceeeeeeeecCCc--chhhhhcCc--chHHHHHHcCCChHHHHHHHHH
Confidence 447888999899899888888 899998653 44433 36666666633
No 182
>PF10752 DUF2533: Protein of unknown function (DUF2533) ; InterPro: IPR019688 This entry represents proteins with unknown function, and appear to be restricted to Bacillus spp.
Probab=21.96 E-value=1.3e+02 Score=24.17 Aligned_cols=52 Identities=15% Similarity=0.205 Sum_probs=38.8
Q ss_pred hhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHH-HHHHHHHhHHHHHhhhcc
Q psy13709 346 DKLEQIRKNYTSGALLTGELKKILIDTITPIVTQ-HQEAMKGVTEEVLAQYMT 397 (405)
Q Consensus 346 ~e~eei~~~~~~G~l~~~elK~~La~~i~~~l~~-~qe~r~~~~~~~~~~~~~ 397 (405)
.-+++....|+.|+.-+-+.=+.+.+.++++-+. +--.|+.++.++|++|..
T Consensus 30 ~aIeeav~~c~~g~pFs~d~IN~vT~~mN~LAk~givP~Rk~VT~eMV~EYv~ 82 (84)
T PF10752_consen 30 AAIEEAVSLCKQGEPFSTDKINEVTKEMNELAKQGIVPTRKYVTVEMVKEYVS 82 (84)
T ss_pred HHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHHcCCCCcchhccHHHHHHHHh
Confidence 3478888899999887877777777777766432 333478899999999964
No 183
>PRK10594 murein L,D-transpeptidase; Provisional
Probab=21.66 E-value=73 Score=34.91 Aligned_cols=54 Identities=28% Similarity=0.345 Sum_probs=35.1
Q ss_pred ceeccCCHH-HHHHHhhcccccCCccchhhhhhcCCCCchHHHHHHHHhccC-ChhhHHHHHHHHhcCC
Q psy13709 293 AIFLTDTPK-QVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLE-DDDKLEQIRKNYTSGA 359 (405)
Q Consensus 293 aI~L~D~p~-~i~~KI~k~A~t~~~~t~e~~~~~ggn~~v~~~~~~l~~f~~-~d~e~eei~~~~~~G~ 359 (405)
+|||+|||. ..++|=.+ |||-|+.=+| ...++..+++. ..-..++|.+...+|+
T Consensus 498 ~IYLHDTP~k~LF~r~~R-a~ShGCIRVe------------~p~~LA~~LL~~~~w~~~~i~~~l~~g~ 553 (608)
T PRK10594 498 AIYLHDTPNHNLFQKDIR-ALSSGCVRVN------------KASDLANMLLQDAGWNDARISDALKQGD 553 (608)
T ss_pred ceeecCCCChHHhCcCcc-cccCCeeEeC------------CHHHHHHHHhcCCCCCHHHHHHHHhCCC
Confidence 899999886 78899999 9998876443 22444444432 2223455666666664
No 184
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=21.55 E-value=1.7e+02 Score=34.95 Aligned_cols=63 Identities=13% Similarity=0.183 Sum_probs=36.7
Q ss_pred HHHHHHcCcccccCCHHHHHHHHhcCCCceeeeecCCCCCCcchhhhHHHH---HHHHHHhcCCccEEEEec
Q psy13709 65 VHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFM---FTKWLQDVFDVPLVIQLT 133 (405)
Q Consensus 65 ~~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~PT~~slHlGhli~~~---~~~~lQ~~~~~~v~I~i~ 133 (405)
.....+.|+|....+.. +.+++|.+|.|-==..|.||+||.+... +..++++.-|..|....|
T Consensus 82 ~~~W~e~~~f~~~~~~~------~~~~~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~G 147 (1205)
T PTZ00427 82 LKYWKSIDAFNTSNKLA------KNKKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFG 147 (1205)
T ss_pred HHHHHhCCCcccCcccc------CCCCcEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCc
Confidence 34666677776543211 2245577788864334699999988753 234455554554444444
No 185
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=21.32 E-value=4.9e+02 Score=25.86 Aligned_cols=115 Identities=15% Similarity=0.232 Sum_probs=68.6
Q ss_pred CCCCCCHHHHHHHHHHhhhhHHHHHHcCcccccCCHHHHHHHHhcCCCceeeeecCCCCCCcchhhhHHHHHHHHHHhcC
Q psy13709 45 GSSKIDDELIARFEKVTNKKVHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVF 124 (405)
Q Consensus 45 g~~~i~~~~~~r~~~~~~~~~~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~PT~~slHlGhli~~~~~~~lQ~~~ 124 (405)
|.-+=+++..--|+.|++. .| -+ |=.--.+..++.++.+.+ ..+|.++.|+=|| +..|=+---. ++..+++..
T Consensus 57 GtCKSa~~~~sDLe~l~~~-t~-~I-R~Y~sDCn~le~v~pAa~-~~g~kv~lGiw~t-dd~~~~~~~t-il~ay~~~~- 129 (305)
T COG5309 57 GTCKSADQVASDLELLASY-TH-SI-RTYGSDCNTLENVLPAAE-ASGFKVFLGIWPT-DDIHDAVEKT-ILSAYLPYN- 129 (305)
T ss_pred CCCcCHHHHHhHHHHhccC-Cc-eE-EEeeccchhhhhhHHHHH-hcCceEEEEEeec-cchhhhHHHH-HHHHHhccC-
Confidence 5555566666667776654 22 11 111123455777887776 4459999999999 5888554322 234555553
Q ss_pred Ccc--EEEEecCccchhccCCCHHHHHHHHHHHHHHHHHcCCCCC
Q psy13709 125 DVP--LVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQD 167 (405)
Q Consensus 125 ~~~--v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~ 167 (405)
+.+ ..|.+ .-|+.-++.+|.+++.++.......+.+.|++-.
T Consensus 130 ~~d~v~~v~V-GnEal~r~~~tasql~~~I~~vrsav~~agy~gp 173 (305)
T COG5309 130 GWDDVTTVTV-GNEALNRNDLTASQLIEYIDDVRSAVKEAGYDGP 173 (305)
T ss_pred CCCceEEEEe-chhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCCc
Confidence 333 23333 4466545578999998887654444556788753
No 186
>COG2442 Uncharacterized conserved protein [Function unknown]
Probab=20.83 E-value=3e+02 Score=21.86 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=38.1
Q ss_pred cccCCccchhhhhhcCCCCchHHHHHHHHhccCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy13709 311 AYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITP 375 (405)
Q Consensus 311 A~t~~~~t~e~~~~~ggn~~v~~~~~~l~~f~~~d~e~eei~~~~~~G~l~~~elK~~La~~i~~ 375 (405)
-.|||++.+ .|-..-|.++..++. ...+.++|.++|.. +...+++.+|.-....
T Consensus 18 ~i~gGkP~I-----~GtRI~V~~Il~~l~----~G~s~eeil~dyp~--Lt~~dI~aal~ya~~~ 71 (79)
T COG2442 18 GICGGKPCI-----RGTRIPVWDILEMLA----AGESIEEILADYPD--LTLEDIRAALRYAADR 71 (79)
T ss_pred cccCCcceE-----eCceecHHHHHHHHH----CCCCHHHHHHhCCC--CCHHHHHHHHHHHHHH
Confidence 346777665 355566667777766 45678999999964 8888888888766554
No 187
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=20.32 E-value=1.5e+02 Score=21.90 Aligned_cols=28 Identities=14% Similarity=0.350 Sum_probs=23.1
Q ss_pred HHHHHHHHhhHHHHHHHHHhHHHHHhhh
Q psy13709 368 ILIDTITPIVTQHQEAMKGVTEEVLAQY 395 (405)
Q Consensus 368 ~La~~i~~~l~~~qe~r~~~~~~~~~~~ 395 (405)
.|+..|..+|...|.|++.+.+..+.+-
T Consensus 3 elt~~v~~lL~qmq~kFq~mS~~I~~ri 30 (54)
T PF06825_consen 3 ELTAFVQNLLQQMQDKFQTMSDQILGRI 30 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778889999999999999888776654
No 188
>PRK07217 replication factor A; Reviewed
Probab=20.14 E-value=2.6e+02 Score=28.17 Aligned_cols=53 Identities=21% Similarity=0.285 Sum_probs=44.5
Q ss_pred hhHHHHHHHHhc-CCCC--HHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHhhhcccc
Q psy13709 346 DKLEQIRKNYTS-GALL--TGELKKILIDTITPIVTQHQEAMKGVTEEVLAQYMTPR 399 (405)
Q Consensus 346 ~e~eei~~~~~~-G~l~--~~elK~~La~~i~~~l~~~qe~r~~~~~~~~~~~~~~~ 399 (405)
+..++|.++|.. | +. ..++++.|-..|++|=-|..|.+..+++..+++|=.+|
T Consensus 6 ~~aeei~~~~s~lg-vdv~~~~ie~~L~~Lv~ey~VP~~EA~rSv~~~~~~k~g~~~ 61 (311)
T PRK07217 6 QHAEEIHEQFSDLG-VDVSVEDVEERLDTLVTEFKVPEDEARRSVTNYYLKEAGIDR 61 (311)
T ss_pred HHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCc
Confidence 356888888877 4 44 88999999999999999999999999999999995444
Done!