Query psy13709
Match_columns 405
No_of_seqs 263 out of 1766
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 18:29:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13709.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13709hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tze_A Tryptophanyl-tRNA synth 100.0 2E-105 8E-110 811.1 31.0 383 15-401 20-406 (406)
2 3hv0_A Tryptophanyl-tRNA synth 100.0 2E-105 6E-110 810.1 29.5 382 21-403 3-385 (393)
3 3i05_A Tryptophanyl-tRNA synth 100.0 1E-102 5E-107 789.2 25.6 379 18-402 8-387 (395)
4 1r6u_A Tryptophanyl-tRNA synth 100.0 2E-101 7E-106 788.7 27.9 390 16-405 32-423 (437)
5 1r6t_A Tryptophanyl-tRNA synth 100.0 1E-100 4E-105 792.3 31.7 389 16-404 79-469 (477)
6 3hzr_A Tryptophanyl-tRNA synth 100.0 4E-100 1E-104 769.2 30.2 376 19-401 11-386 (386)
7 2ip1_A Tryptophanyl-tRNA synth 100.0 2.3E-99 8E-104 774.3 30.4 389 15-403 20-414 (432)
8 3jxe_A Tryptophanyl-tRNA synth 100.0 5.3E-97 2E-101 747.4 31.6 366 18-401 3-370 (392)
9 3foc_A Tryptophanyl-tRNA synth 100.0 7.6E-97 3E-101 754.8 29.5 371 31-401 30-450 (451)
10 3a04_A Tryptophanyl-tRNA synth 100.0 4.5E-91 1.5E-95 702.0 31.2 364 18-399 2-371 (372)
11 2cya_A Tyrosyl-tRNA synthetase 100.0 1.3E-63 4.3E-68 501.5 26.5 303 65-394 9-357 (364)
12 2j5b_A Tyrosyl-tRNA synthetase 100.0 6.1E-64 2.1E-68 501.0 24.1 310 65-400 14-348 (348)
13 2cyc_A Tyrosyl-tRNA synthetase 100.0 8.3E-64 2.8E-68 504.4 24.3 305 65-395 6-371 (375)
14 3prh_A Tryptophanyl-tRNA synth 100.0 6.3E-64 2.1E-68 504.8 21.6 293 73-389 11-326 (388)
15 2yxn_A Tyrosyl-tRNA synthetase 100.0 1.6E-63 5.3E-68 493.5 19.2 289 65-386 7-320 (322)
16 3tzl_A Tryptophanyl-tRNA synth 100.0 1.2E-62 4.1E-67 486.8 23.6 272 92-390 3-290 (322)
17 3vgj_A Tyrosyl-tRNA synthetase 100.0 1.6E-61 5.6E-66 486.9 26.5 302 65-388 30-357 (373)
18 2cyb_A Tyrosyl-tRNA synthetase 100.0 1.2E-60 4.2E-65 473.3 28.2 293 65-386 6-321 (323)
19 2el7_A Tryptophanyl-tRNA synth 100.0 3.7E-61 1.3E-65 479.0 23.2 282 94-396 3-303 (337)
20 2g36_A Tryptophanyl-tRNA synth 100.0 4.1E-61 1.4E-65 479.0 23.5 283 91-395 11-313 (340)
21 1yi8_B Tryptophanyl-tRNA synth 100.0 5.6E-61 1.9E-65 480.0 23.3 280 90-390 20-316 (351)
22 3sz3_A Tryptophanyl-tRNA synth 100.0 2E-61 6.9E-66 480.5 18.8 276 93-389 7-304 (341)
23 2yy5_A Tryptophanyl-tRNA synth 100.0 7.5E-61 2.6E-65 478.5 20.2 284 91-397 3-319 (348)
24 1i6k_A TRPRS, tryptophanyl-tRN 100.0 2.1E-60 7.3E-65 471.9 21.9 271 94-390 3-293 (328)
25 3n9i_A Tryptophanyl-tRNA synth 100.0 1.5E-60 5.2E-65 474.5 20.4 275 92-389 15-309 (346)
26 2zp1_A Tyrosyl-tRNA synthetase 100.0 2.6E-59 8.8E-64 461.9 27.9 284 67-386 5-308 (314)
27 2jan_A Tyrosyl-tRNA synthetase 100.0 2.4E-60 8.2E-65 485.0 21.1 292 65-388 6-319 (432)
28 1n3l_A Tyrosyl-tRNA synthetase 100.0 3.1E-59 1.1E-63 470.9 27.6 292 65-385 10-329 (372)
29 3p0j_A Tyrosyl-tRNA synthetase 100.0 4.7E-59 1.6E-63 499.8 27.2 308 66-388 15-349 (690)
30 2ts1_A Tyrosyl-tRNA synthetase 100.0 1.1E-58 3.7E-63 471.9 21.7 289 65-388 4-317 (419)
31 2pid_A Tyrosyl-tRNA synthetase 100.0 1.5E-58 5.2E-63 462.9 21.1 293 65-389 12-342 (356)
32 1h3f_A Tyrosyl-tRNA synthetase 100.0 4.3E-58 1.5E-62 469.4 24.0 284 65-389 11-316 (432)
33 1jil_A Tyrrs, tyrosyl-tRNA syn 100.0 7.9E-58 2.7E-62 466.6 25.5 288 65-388 6-318 (420)
34 2dlc_X Tyrosyl-tRNA synthetase 100.0 1.7E-57 5.7E-62 461.5 26.8 305 65-387 12-344 (394)
35 1y42_X Tyrosyl-tRNA synthetase 100.0 3.9E-57 1.3E-61 457.5 23.5 291 65-388 37-380 (392)
36 3p0j_A Tyrosyl-tRNA synthetase 100.0 4.5E-50 1.5E-54 430.3 20.9 266 90-385 380-669 (690)
37 1nzj_A Hypothetical protein YA 98.5 4.9E-07 1.7E-11 88.1 10.2 182 97-298 8-242 (298)
38 1j09_A Glutamyl-tRNA synthetas 98.4 1.5E-06 5.3E-11 89.5 11.2 188 100-309 9-272 (468)
39 2cfo_A Glutamyl-tRNA synthetas 98.3 4.3E-06 1.5E-10 86.7 14.0 68 240-309 205-276 (492)
40 2ja2_A Glutamyl-tRNA synthetas 98.1 8.9E-06 3E-10 84.4 10.9 65 241-309 211-286 (498)
41 3afh_A Glutamyl-tRNA synthetas 98.1 9.7E-06 3.3E-10 83.9 9.8 196 95-309 26-284 (488)
42 3al0_C Glutamyl-tRNA(Gln) amid 98.0 1.3E-05 4.4E-10 84.8 9.0 192 99-310 136-389 (592)
43 2o5r_A Glutamyl-tRNA synthetas 97.8 0.00041 1.4E-08 71.7 17.0 66 240-309 220-291 (481)
44 4g6z_A Glutamate-tRNA ligase; 97.5 0.0048 1.6E-07 63.7 19.3 68 240-309 222-293 (490)
45 3aii_A Glutamyl-tRNA synthetas 97.1 0.0018 6.2E-08 67.7 10.5 74 95-178 97-172 (553)
46 1irx_A Lysyl-tRNA synthetase; 96.9 0.0017 5.8E-08 67.6 8.6 65 243-309 235-308 (523)
47 3h99_A Methionyl-tRNA syntheta 96.6 0.028 9.6E-07 58.8 14.6 51 244-298 306-358 (560)
48 4dlp_A Aminoacyl-tRNA syntheta 96.4 0.068 2.3E-06 55.6 16.4 53 240-298 278-334 (536)
49 4gri_A Glutamate--tRNA ligase; 96.4 0.14 4.7E-06 53.2 18.1 50 240-291 231-280 (512)
50 1f7u_A Arginyl-tRNA synthetase 95.3 0.036 1.2E-06 58.7 8.5 54 244-303 371-425 (607)
51 1iq0_A Arginyl-tRNA synthetase 95.2 0.011 3.9E-07 62.3 4.3 52 243-298 352-407 (592)
52 1qtq_A GLNRS, protein (glutami 94.2 0.14 4.9E-06 53.4 9.2 92 85-186 17-110 (553)
53 2hz7_A Glutaminyl-tRNA synthet 93.5 0.27 9.1E-06 53.8 10.2 86 84-178 56-143 (851)
54 3fnr_A Arginyl-tRNA synthetase 93.4 0.032 1.1E-06 57.3 2.6 55 243-298 241-298 (464)
55 2csx_A Methionyl-tRNA syntheta 91.7 0.1 3.5E-06 53.6 3.8 55 240-298 252-308 (497)
56 2d5b_A Methionyl-tRNA syntheta 91.2 0.13 4.3E-06 52.8 3.9 56 240-298 253-310 (500)
57 3u1f_A Methionyl-tRNA syntheta 90.7 0.6 2E-05 48.2 8.4 79 88-167 6-96 (542)
58 3kfl_A Methionyl-tRNA syntheta 88.9 0.2 6.7E-06 52.5 3.0 53 240-298 296-352 (564)
59 1ile_A Ilers, isoleucyl-tRNA s 87.9 0.29 9.9E-06 53.6 3.7 56 240-298 546-604 (821)
60 2x1l_A Methionyl-tRNA syntheta 87.8 0.2 6.7E-06 51.8 2.2 55 240-298 267-323 (524)
61 3u1f_A Methionyl-tRNA syntheta 86.8 0.32 1.1E-05 50.3 3.1 53 240-298 280-336 (542)
62 1ffy_A Isoleucyl-tRNA syntheta 85.2 0.61 2.1E-05 51.7 4.4 55 240-298 550-608 (917)
63 3c8z_A Cysteinyl-tRNA syntheta 82.8 0.6 2.1E-05 46.9 2.9 73 94-167 42-126 (414)
64 2zue_A Arginyl-tRNA synthetase 81.2 0.47 1.6E-05 50.4 1.5 52 244-299 383-440 (629)
65 1li5_A Cysrs, cysteinyl-tRNA s 80.1 0.81 2.8E-05 46.7 2.7 73 93-166 23-107 (461)
66 1rqg_A Methionyl-tRNA syntheta 79.9 8.7 0.0003 41.2 10.9 77 91-168 2-91 (722)
67 1gax_A Valrs, valyl-tRNA synth 79.8 0.96 3.3E-05 49.8 3.3 54 240-298 483-541 (862)
68 1li5_A Cysrs, cysteinyl-tRNA s 79.1 5.3 0.00018 40.6 8.4 64 241-309 223-295 (461)
69 2csx_A Methionyl-tRNA syntheta 79.0 9 0.00031 38.9 10.2 74 94-168 7-93 (497)
70 3tqo_A Cysteinyl-tRNA syntheta 78.9 4.3 0.00015 41.4 7.7 76 92-168 25-112 (462)
71 4arc_A Leucine--tRNA ligase; l 78.7 17 0.00057 40.0 12.8 94 65-167 35-140 (880)
72 3sp1_A Cysteinyl-tRNA syntheta 77.4 8.5 0.00029 39.6 9.4 74 93-168 43-139 (501)
73 2d5b_A Methionyl-tRNA syntheta 76.6 6 0.0002 40.2 8.1 73 94-167 5-90 (500)
74 1wkb_A Leucyl-tRNA synthetase; 75.9 1.5 5.2E-05 47.7 3.5 55 240-298 605-663 (810)
75 1wz2_A Leucyl-tRNA synthetase; 75.7 1.7 5.8E-05 48.4 3.9 55 240-298 605-663 (967)
76 3c8z_A Cysteinyl-tRNA syntheta 71.4 10 0.00035 37.7 8.1 54 240-297 246-303 (414)
77 3kfl_A Methionyl-tRNA syntheta 70.6 12 0.00043 38.7 8.8 77 90-167 25-113 (564)
78 1gax_A Valrs, valyl-tRNA synth 70.0 7.7 0.00026 42.6 7.3 58 66-133 18-79 (862)
79 2v0c_A Aminoacyl-tRNA syntheta 69.6 11 0.00039 41.3 8.6 93 67-167 16-120 (878)
80 3tqo_A Cysteinyl-tRNA syntheta 69.0 2.5 8.7E-05 43.1 3.0 25 270-298 258-282 (462)
81 2x1l_A Methionyl-tRNA syntheta 65.3 16 0.00056 37.2 8.3 64 104-167 25-99 (524)
82 3sp1_A Cysteinyl-tRNA syntheta 63.0 3.8 0.00013 42.2 2.9 53 241-297 256-311 (501)
83 4arc_A Leucine--tRNA ligase; l 62.1 5.1 0.00017 44.2 3.9 14 284-298 639-652 (880)
84 2v0c_A Aminoacyl-tRNA syntheta 61.0 3 0.0001 45.9 1.9 15 283-298 636-650 (878)
85 1rqg_A Methionyl-tRNA syntheta 53.4 2.7 9.2E-05 45.3 -0.1 41 265-309 327-373 (722)
86 3q12_A Pantoate--beta-alanine 47.7 1.2E+02 0.0042 28.7 10.4 56 239-301 146-201 (287)
87 1ile_A Ilers, isoleucyl-tRNA s 45.4 11 0.00039 40.9 3.3 46 89-135 36-86 (821)
88 3foc_A Tryptophanyl-tRNA synth 41.8 5.4 0.00019 40.5 -0.0 15 238-252 233-247 (451)
89 3mxt_A Pantothenate synthetase 38.9 1.7E+02 0.0057 27.8 9.8 62 239-307 143-204 (285)
90 2kmf_A Photosystem II 11 kDa p 36.8 34 0.0012 28.1 4.0 31 41-72 84-114 (115)
91 1ffy_A Isoleucyl-tRNA syntheta 34.4 54 0.0018 36.1 6.5 43 90-133 47-93 (917)
92 2y6x_A PSB27, photosystem II 1 32.4 31 0.0011 28.2 3.1 31 41-72 80-110 (113)
93 1wz2_A Leucyl-tRNA synthetase; 32.2 48 0.0017 36.7 5.6 56 66-127 15-73 (967)
94 2zue_A Arginyl-tRNA synthetase 31.9 35 0.0012 35.9 4.3 39 95-135 124-168 (629)
95 2ejc_A Pantoate--beta-alanine 31.6 1.2E+02 0.0041 28.6 7.6 53 244-303 146-198 (280)
96 1v8f_A Pantoate-beta-alanine l 30.4 1.6E+02 0.0054 27.7 8.2 50 244-300 142-191 (276)
97 1wkb_A Leucyl-tRNA synthetase; 29.6 56 0.0019 35.3 5.5 44 66-115 15-58 (810)
98 3ag6_A Pantothenate synthetase 29.4 2.3E+02 0.0078 26.7 9.1 53 244-303 147-199 (283)
99 3ci9_A Heat shock factor-bindi 27.1 61 0.0021 22.4 3.4 29 367-395 5-33 (48)
100 3fnr_A Arginyl-tRNA synthetase 22.4 75 0.0026 32.1 4.6 42 95-137 35-81 (464)
101 3oqi_A YVMC, putative uncharac 20.7 5.1E+02 0.017 24.0 11.1 91 89-186 28-129 (257)
No 1
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=100.00 E-value=2.3e-105 Score=811.07 Aligned_cols=383 Identities=43% Similarity=0.774 Sum_probs=347.3
Q ss_pred CCCCCCccCCCcccCC----CCCcccHHHHHHhhCCCCCCHHHHHHHHHHhhhhHHHHHHcCcccccCCHHHHHHHHhcC
Q psy13709 15 VDGEDDVVDPWNVTSK----SMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSHRDMHSILNLYEQG 90 (405)
Q Consensus 15 ~~~~~~~v~pw~~~~~----~~~~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~~~l~~RGl~~~~~d~~~ll~~~~~~ 90 (405)
+++++|.||||+|++. +..+|||+|||++|||++||+++++||+++||+++|+|+|||+|++|+|+++++++++++
T Consensus 20 ~~~~~~~v~pw~v~~~~~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~~~RG~i~~~~d~~~ll~~~~~~ 99 (406)
T 3tze_A 20 GSMAEQRITPWDVEVVSTDEVPVAIDYDKIINQFGCEKFNQALADRLEKLSGKPAHYFFRRGIVFAHRDFNLLLDEIANN 99 (406)
T ss_dssp --------------------CCSCCCHHHHHHTTTCEECCHHHHHHHHHHHSSCCCHHHHTTSEEEEESHHHHHHHHHTT
T ss_pred CccCCcccCccccccccccCccccccHHHHHHHhCCCcCCHHHHHHHHHHhCCCcHHHHhCCCeeccccHHHHHHHHhcC
Confidence 3466899999999842 245799999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeecCCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q psy13709 91 KPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTF 170 (405)
Q Consensus 91 ~~~~iytG~~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~kt~ 170 (405)
+|+++|+||+|||++|||||++|+++++|||+++|++++|+|||++|+++++++++++++|+++++++++|||+||++++
T Consensus 100 ~p~~vy~G~~PTg~~lHLGh~v~~~~~~~lQ~~~g~~~~i~IaD~~a~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~k~~ 179 (406)
T 3tze_A 100 RPFYLYTGRGPSSKTMHIGHTIPFLLCKYMQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPKLTY 179 (406)
T ss_dssp CCEEEEEEECCCSSCCBGGGHHHHHHHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGEE
T ss_pred CCeEEEEeeCCCCCcccHHHHHHHHHHHHHHHhcCCcEEEEeeChHHHcCCCCCHHHHHHHHHHHHHHHHHcCCCccceE
Confidence 99999999999988999999999999999999989999999999999988889999999999999999999999999999
Q ss_pred EeeCccccChHHHHHHHHHHhhhCHHHHHHHhCCCCCCccccchhhhhhhcCCCcCchhhhhccCCCCCceeeecCCchH
Q psy13709 171 IFSDIDFMNPSFYLNILKIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDP 250 (405)
Q Consensus 171 i~~ns~~~~~~~~~~v~~l~~~~t~~~~~~~~g~~~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~lvp~G~DQd~ 250 (405)
||+|++|. ..+|..+++|++++|++++++++|+.+++|+|+|+||+|||||+++++||+|+.+ .+|+||||+||||
T Consensus 180 i~~qs~~~-~~~~~~~~~L~r~~t~~~~~~~~g~~~~~s~g~f~YPlLQaaD~~~~~~p~il~~---~a~lvpvG~DQ~~ 255 (406)
T 3tze_A 180 IFSNVEAS-HHFEENILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKG---AMCLVPAAVDQDP 255 (406)
T ss_dssp EEEHHHHG-GGGHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGSTTSCTT---CEEEEEEEGGGHH
T ss_pred EEeccHhH-HHHHHHHHHHHhhCCHHHHHHhhCCCCCCcchhhhhHHHhhhhhhccchHHhccC---CCeEEeeccchHH
Confidence 99999997 4889999999999999999999999899999999999999999999999999874 4899999999999
Q ss_pred HHHHHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCCCCceeccCCHHHHHHHhhcccccCCccchhhhhhcCCCCc
Q psy13709 251 YFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQATVEEHRELGGNCD 330 (405)
Q Consensus 251 ~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~~~~t~e~~~~~ggn~~ 330 (405)
|+++|||+|+|+|+++|+++++++||+|+|+++|||||.|+|+|||+|+|++|++|||+||||||+.+++++++.||||+
T Consensus 256 ~i~l~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~~~~I~L~D~p~~I~kKI~k~A~td~~~~~e~~~~~~g~p~ 335 (406)
T 3tze_A 256 FFRLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLDDAQDTIRKKIIAYAYSGGRKTLEEHREKGGDID 335 (406)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEECCCCCTTSCCCCSSCSCGGGSCBTTCCHHHHHHHHHHHCCCCCCCC-------CCCGG
T ss_pred HHHHHHHHHHHcCCCCceeeccCcccCCCCCCcCCCCCCCCCcccCCCCHHHHHHHHHhhccCCCcccccccccCCCCCc
Confidence 99999999999999999999999999999986799999988899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhccCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHhhhcccccc
Q psy13709 331 VDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQHQEAMKGVTEEVLAQYMTPRKL 401 (405)
Q Consensus 331 v~~~~~~l~~f~~~d~e~eei~~~~~~G~l~~~elK~~La~~i~~~l~~~qe~r~~~~~~~~~~~~~~~~~ 401 (405)
+|++|+||++|+++++++++|+++|++|+++|++||+.||++|+++++|+|+||++++++.|++||++|+|
T Consensus 336 v~~l~~~~~~~~~~~~~~eei~~~y~~G~l~~g~lK~~Lae~i~~~l~pirer~~~~~~d~~~~~~~~~~~ 406 (406)
T 3tze_A 336 VDVPFEYLKYFLDDDQELEKYRSGYIKGEITSKEMKEKCVVVIQEFVSRYQESRKRVTDDDLRAFIDINKF 406 (406)
T ss_dssp GCHHHHHHHHHCCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCGGGC
T ss_pred ccHHHHHHHHHcCCcchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCcCCC
Confidence 99999999999878899999999999999999999999999999999999999999999999999999986
No 2
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=100.00 E-value=1.8e-105 Score=810.13 Aligned_cols=382 Identities=53% Similarity=0.976 Sum_probs=338.6
Q ss_pred ccCCCcccCCCCCcccHHHHHHhhCCCCCCHHHHHHHHHHhhhhHHHHHHcCcccccCCHHHHHHHHhcCCCceeeeecC
Q psy13709 21 VVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRG 100 (405)
Q Consensus 21 ~v~pw~~~~~~~~~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~ 100 (405)
-||||+|+++....+||+|||++|||++||+++++||+++||+++|+|+|||+|++|+|++++++++++|+|+++|+||+
T Consensus 3 ~~~pw~~~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~~~l~~RG~i~~~~d~~~l~~~l~~g~~~~vy~G~~ 82 (393)
T 3hv0_A 3 GSMPWEVKADNAYGIDYNKLIDKFGCKLITKDMIERMERLTGQKAHHFFRRNIFLSHRDFEKILDVYEKGELFYLYTGRG 82 (393)
T ss_dssp -----------------CCHHHHTTCEECCHHHHHHHHHHHSSCCCHHHHTTSEEEEESHHHHHHHHHTTCCCEEEEEEC
T ss_pred CCCcccccCCccccccHHHHHHHhCCCcCCHHHHHHHHHHhCCChHHHHhCCCccccCCHHHHHHHHhcCCCeEEEeCCC
Confidence 48999998644457999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCccchhcc-CCCHHHHHHHHHHHHHHHHHcCCCCCceEEeeCccccC
Q psy13709 101 PSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWK-NIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMN 179 (405)
Q Consensus 101 PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~-~lt~e~i~~~~~~~~~~~~A~G~dp~kt~i~~ns~~~~ 179 (405)
|||++|||||++++++++|||++||++++|+|||+++++++ .++++++++|+++++++++|||+||++++||+|++|.
T Consensus 83 PTa~~lHlGh~v~~~~~~~lQ~~~~~~v~i~I~D~~~~~~r~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~ns~~~- 161 (393)
T 3hv0_A 83 PSSESLHVGHLVPFLFTKYLQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACGFDPELTFIFTNLEYI- 161 (393)
T ss_dssp CSSSSCBSTTHHHHHHHHHHHHHHCCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTCCCTTTEEEEEHHHHH-
T ss_pred CCCCCccHHHHHHHHHHHHHHHhcCCCeEeeccChHHHhhccCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEECCHHH-
Confidence 99889999999999999999999999999999999999888 6899999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHhhhCHHHHHHHhCCCCCCccccchhhhhhhcCCCcCchhhhhccCCCCCceeeecCCchHHHHHHHHHh
Q psy13709 180 PSFYLNILKIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVA 259 (405)
Q Consensus 180 ~~~~~~v~~l~~~~t~~~~~~~~g~~~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~lvp~G~DQd~~~~l~rdla 259 (405)
..+|..+++|++++|++++++++|+++++|+|+|+||+|||||+++.+||+|+..+.|++|+||||+|||||+++|||+|
T Consensus 162 ~~~~~~~~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaDil~~~~p~l~~~~~di~~lvp~G~DQ~~~i~l~Rdla 241 (393)
T 3hv0_A 162 AELYPDILRIEKKISCSQIKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRDVA 241 (393)
T ss_dssp HHHHHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCSCCCEEEEEEGGGHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCCHHHHHHhhCCCCCCchhhHhHHHHHHHHHHhhhhHHHhcccCCCceecccccchHHHHHHHHHHH
Confidence 57799999999999999999999999999999999999999999999999999655567899999999999999999999
Q ss_pred hhhCCCCceeeecccccCCCCCCccCCCCCCCCceeccCCHHHHHHHhhcccccCCccchhhhhhcCCCCchHHHHHHHH
Q psy13709 260 PKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLT 339 (405)
Q Consensus 260 ~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~~~~t~e~~~~~ggn~~v~~~~~~l~ 339 (405)
+|+|+++|+++++++||+|+|+++|||||.+||+|||+|+|++|++|||+||||||+.+++++++.||||++|++|+|++
T Consensus 242 ~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~nsaI~L~D~p~~i~kKI~k~A~td~~~~~~~~~~~~g~p~~~~~~~~~~ 321 (393)
T 3hv0_A 242 PRLGYLKPSSIHSIFLPSLQGSQTKMSASVQNSSIFVNDNEESIRNKIMKYAFSGGQATEEEQRRLGANLDVDVSWQYLR 321 (393)
T ss_dssp GGGTCCCCEEEEECCCCC-------------CCCCBTTCCHHHHHHHHHHHSCCCSCSSSCCC---CCCTTTCHHHHHHH
T ss_pred HHcCCCCceeeccCcccCCCCCCcCCCCCCCCCeEeccCCHHHHHHHHHhhccCCCCccccccccCCCCcchhHHHHHHH
Confidence 99999999999999999999987799999999999999999999999999999999999999999999999999999999
Q ss_pred hccCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHhhhccccccCC
Q psy13709 340 FFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQHQEAMKGVTEEVLAQYMTPRKLKF 403 (405)
Q Consensus 340 ~f~~~d~e~eei~~~~~~G~l~~~elK~~La~~i~~~l~~~qe~r~~~~~~~~~~~~~~~~~~~ 403 (405)
+|+.+++++++|+++|++|+++|++||+.||+.|+++++++|+||++++++.|++||++|++.|
T Consensus 322 ~~~~~~~~~eei~~~y~~G~l~~g~~K~~lae~i~~~l~pirer~~~~~~d~~~~~~~~~~~~~ 385 (393)
T 3hv0_A 322 FLMEDDEKLEEIGKKYSSGEMLSGEIKSILVQELVKLTKNHQKNREAINDDVIAKFTNKSREQL 385 (393)
T ss_dssp HHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHCCCCCCC
T ss_pred HHcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCcCHHHH
Confidence 9988889999999999999999999999999999999999999999999999999999999976
No 3
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=100.00 E-value=1.5e-102 Score=789.22 Aligned_cols=379 Identities=57% Similarity=0.975 Sum_probs=312.4
Q ss_pred CCCccCCCcccCCCCCcccHHHHHHhhCCCCCCHHHHHHHHHHhhhhHHHHHHcCcccccCCHHHHHHHHhcCCCceeee
Q psy13709 18 EDDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYT 97 (405)
Q Consensus 18 ~~~~v~pw~~~~~~~~~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iyt 97 (405)
.+..||||+|+ +.|||+|||++|||++||+++++||+++||+++|+|++||++++|+|++.+++++++|+|+++|+
T Consensus 8 ~~~~~~~~~~~----~~~dy~~l~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~RG~~~~~~d~~~~l~~~~~~~~~~vy~ 83 (395)
T 3i05_A 8 HEAVVTPWSVE----GDVNYDKLIKDFGSHAIDEALLERIERVLGKKPHHFLRRGIFFSHRDLNLLLDVYESGQPFYLYT 83 (395)
T ss_dssp ------------------CHHHHHHHTTCEECCHHHHHHHHHHHTSCCCHHHHTTSEEEEESHHHHHHHHHTTCCEEEEE
T ss_pred ccceecccccc----CcccHHHHHHHhCCCcCCHHHHHHHHHhhCcchHHHHhcCCccccccHHHHHHHHhcCCCeEEEE
Confidence 36789999998 34999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEeeCccc
Q psy13709 98 GRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDF 177 (405)
Q Consensus 98 G~~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~kt~i~~ns~~ 177 (405)
||+|||++|||||++|+++++|||+++|++++|+|||+++++.+.++++++++|+++++++++|||+||++++||+|++|
T Consensus 84 G~~PTg~~lHLGh~v~~~~~~~lQ~~~~~~v~i~I~D~~~~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~ns~~ 163 (395)
T 3i05_A 84 GRGPSSESMHMGHLIPFMFTKWLQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPELTFIFRDFDY 163 (395)
T ss_dssp EECCCSSCCBGGGSHHHHHHHHHHHHHTCCEEEEECHHHHHHHSCCCHHHHHHHHHHHHHHHHTTTCCTTSEEEEEHHHH
T ss_pred eecCCCccchHHHHHHHHHHHHHHHhcCCcEEEEEcchHHHhcCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCHH
Confidence 99999889999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred cChHHHHHHHHHHhhhCHHHHHHHhCCCCCCccccchhhhhhhcCCCcCchhhhhccC-CCCCceeeecCCchHHHHHHH
Q psy13709 178 MNPSFYLNILKIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKN-HKVPCLIPCAIDQDPYFRLTR 256 (405)
Q Consensus 178 ~~~~~~~~v~~l~~~~t~~~~~~~~g~~~~~s~g~~~YpllQaaD~~~~~f~~l~~~~-~~~~~lvp~G~DQd~~~~l~r 256 (405)
.. .||+++++|++++|++++++++|+.+++|+|+|+||+|||||+++++||.++..+ .+++|++|||+|||||+++||
T Consensus 164 ~~-~~~~~v~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaD~~~~~~~DIll~~~~~~~~lvp~G~DQ~~~i~l~R 242 (395)
T 3i05_A 164 MG-CMYRTVAKIERAFTASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYFRLTR 242 (395)
T ss_dssp TT-TSHHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCTTTSCGGGCCCEEEEEEEGGGHHHHHHHH
T ss_pred HH-HHHHHHHHHHhhCCHHHHHHhhCCCCCCchHHHHHHHHHHHhhhcccchhhhcccccCCceEEEeccchHHHHHHHH
Confidence 84 7999999999999999999999999999999999999999999999999987654 346899999999999999999
Q ss_pred HHhhhhCCCCceeeecccccCCCCCCccCCCCCCCCceeccCCHHHHHHHhhcccccCCccchhhhhhcCCCCchHHHHH
Q psy13709 257 DVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQ 336 (405)
Q Consensus 257 dla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~~~~t~e~~~~~ggn~~v~~~~~ 336 (405)
|+|+|+|+++|+++++++||+|+|+++||||| ++|+|||+|+|++|++|||++|||||+.+++++++.||||++|++|+
T Consensus 243 dla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS-~~~~I~L~D~p~~i~kKI~k~A~td~~~~~e~~~~~~g~p~v~~~~~ 321 (395)
T 3i05_A 243 DIAPRLGYLKPAVIHSKFFPGLSGPKGKMSSS-SGTAVLLTDTEKMVKDKINKHAFSGGGATKQEHFLLGANVEVDVPIQ 321 (395)
T ss_dssp HTHHHHTCCCCEEEEECCCCCC--------------CCBTTCCHHHHHHHHC----------------------CCHHHH
T ss_pred HHHHHcCCCCceeeccccccCCCCCcccCCCC-CCCcccCCCCHHHHHHHHHhhccCCCccchhhcccCCCCcchhHHHH
Confidence 99999999999999999999999987899999 77799999999999999999999999999999999999999999999
Q ss_pred HHHhccCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHhhhccccccC
Q psy13709 337 YLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQHQEAMKGVTEEVLAQYMTPRKLK 402 (405)
Q Consensus 337 ~l~~f~~~d~e~eei~~~~~~G~l~~~elK~~La~~i~~~l~~~qe~r~~~~~~~~~~~~~~~~~~ 402 (405)
|+++|+++++++++|+++|++|+++|++||+.||+.|+++++|+|+||++++++.|++||++|++.
T Consensus 322 ~~~~~~~~~~~~eei~~~y~~G~l~~g~lK~~lae~i~~~l~pirer~~~~~~d~~~~~~~~~~~~ 387 (395)
T 3i05_A 322 WLSFFLEDDEELARVKKEYMLGRIMTGEVKKLLINTITAITKTHQEKRKLVTDEDVQLFTSTRIMG 387 (395)
T ss_dssp HHHHHCCCSHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHSCCCCT
T ss_pred HHHHHcCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhChhccc
Confidence 999998788899999999999999999999999999999999999999999999999999999985
No 4
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=100.00 E-value=2e-101 Score=788.70 Aligned_cols=390 Identities=68% Similarity=1.161 Sum_probs=367.4
Q ss_pred CCCCCccCCCcccCCCCCcccHHHHHHhhCCCCCCHHHHHHHHHHhhhhHHHHHHcCcccccCCHHHHHHHHhcCCCcee
Q psy13709 16 DGEDDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSHRDMHSILNLYEQGKPFFL 95 (405)
Q Consensus 16 ~~~~~~v~pw~~~~~~~~~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~~~l~~RGl~~~~~d~~~ll~~~~~~~~~~i 95 (405)
++.++.||||+|++.+.++|||+|||++|||++||+++++||+++||+++|+|++||+|++|+|++.+++++++++|+++
T Consensus 32 ~~~~~~v~pw~v~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~~~l~~RG~i~~~~d~~~l~~~l~~~~~~~v 111 (437)
T 1r6u_A 32 EAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYL 111 (437)
T ss_dssp ---CCEEETTEEECSCTTCSCTTTHHHHTTCEECCHHHHHHHHHHHTSCCCHHHHHTSEEEEESHHHHHHHHTTTCCEEE
T ss_pred ccccceeCCCcccCCcccccCHHHHHHHhCCCCCCHHHHHHHHHHhCCCcHHHHhCCCccCCCCHHHHHHHHhcCCCcEE
Confidence 35689999999987656789999999999999999999999999999999999999999999999999999998999999
Q ss_pred eeecCCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEeeCc
Q psy13709 96 YTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDI 175 (405)
Q Consensus 96 ytG~~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~kt~i~~ns 175 (405)
|+||+||||+|||||++|+++++|||+.+|++++|+|||+++++++.+|.+++++|+++++++++|||+||++++||+||
T Consensus 112 y~G~dPTag~LHLGh~v~~~~~~~lQ~~~G~~~iilIgD~ta~igd~lt~e~i~~n~~~~~~~~lA~GlDp~kt~i~~nS 191 (437)
T 1r6u_A 112 YTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDL 191 (437)
T ss_dssp EEEECCCSSCCBHHHHHHHHHHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHH
T ss_pred EEcccCCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEech
Confidence 99999998899999999999899999955788899999999999888999999999999999999999999999999999
Q ss_pred cccC--hHHHHHHHHHHhhhCHHHHHHHhCCCCCCccccchhhhhhhcCCCcCchhhhhccCCCCCceeeecCCchHHHH
Q psy13709 176 DFMN--PSFYLNILKIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFR 253 (405)
Q Consensus 176 ~~~~--~~~~~~v~~l~~~~t~~~~~~~~g~~~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~lvp~G~DQd~~~~ 253 (405)
+|.. .+|++++++|++|++++++++++++.+++|+|+|+||+|||||+++.+++..++.+...+|+||||+|||||++
T Consensus 192 d~~~~l~~~~~l~~~v~rm~~~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~~~~~lVpvG~DQ~~~i~ 271 (437)
T 1r6u_A 192 DYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFR 271 (437)
T ss_dssp HHGGGCTTHHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHHHH
T ss_pred hhhhhHHHHHHHHHHHHhhccHHHHHHHhCCCCCCchHhHHHHHHHHHHHHHhhcchhcccccCCceEEEeehhhHHHHH
Confidence 9982 47999999999999999999999998999999999999999999998888888644345799999999999999
Q ss_pred HHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCCCCceeccCCHHHHHHHhhcccccCCccchhhhhhcCCCCchHH
Q psy13709 254 LTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQATVEEHRELGGNCDVDI 333 (405)
Q Consensus 254 l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~~~~t~e~~~~~ggn~~v~~ 333 (405)
+|||+|+|+|+++|.++++++||+|+|+++|||||.+||+|||+|+|++|++||++|||||++.+++++++.|+||++|+
T Consensus 272 l~Rdla~r~~~~~P~~l~~pll~gLdG~~~KMSKS~~nsaI~L~D~p~~I~kKI~~ya~td~~~~~~~~~~~g~~pd~~~ 351 (437)
T 1r6u_A 272 MTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDV 351 (437)
T ss_dssp HHHHHGGGGTCCCCEEEEECCCEETTEEEEECCTTSSSSCCBTTCCHHHHHHHHHHTSCCCBCSSHHHHHHHCBCTTTCH
T ss_pred HHHHHHHHhCCCCceEeecccccCCCCCccccCCCCCCCeeeccCCHHHHHHHhhccccCCCccchhhccccCCCccHHH
Confidence 99999999999999999999999999976799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHhhhccccccCCCC
Q psy13709 334 AYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQHQEAMKGVTEEVLAQYMTPRKLKFDF 405 (405)
Q Consensus 334 ~~~~l~~f~~~d~e~eei~~~~~~G~l~~~elK~~La~~i~~~l~~~qe~r~~~~~~~~~~~~~~~~~~~~~ 405 (405)
+++||++|+.+++++++|+++|.+|++++++||+.||++|+++++++|+||+++++++|++||.+|+|.|.+
T Consensus 352 v~~~l~~ft~~~~eieel~~~~~~G~~~~~~~K~~LAe~i~~~l~~~rer~~~~~~~~~~~~~~~~~~~~~~ 423 (437)
T 1r6u_A 352 SFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSFDF 423 (437)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHTSCCCCSCC-
T ss_pred HHHHHHHHcCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcch
Confidence 999999998889999999999999999999999999999999999999999999998899999999998853
No 5
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=100.00 E-value=1.2e-100 Score=792.28 Aligned_cols=389 Identities=67% Similarity=1.146 Sum_probs=365.9
Q ss_pred CCCCCccCCCcccCCCCCcccHHHHHHhhCCCCCCHHHHHHHHHHhhhhHHHHHHcCcccccCCHHHHHHHHhcCCCcee
Q psy13709 16 DGEDDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSHRDMHSILNLYEQGKPFFL 95 (405)
Q Consensus 16 ~~~~~~v~pw~~~~~~~~~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~~~l~~RGl~~~~~d~~~ll~~~~~~~~~~i 95 (405)
+++++.||||+|++.+.++|||+|||++|||++||+++++||+++||+++|+|++||+|++|+|++.+++++++++|+++
T Consensus 79 ~~~~~~v~pw~~~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~~~l~~RG~i~~~~d~~~l~~~l~~~~~~~v 158 (477)
T 1r6t_A 79 EAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYL 158 (477)
T ss_dssp ---CCEESSSCEECSCTTCCCHHHHHHHHTCEECCHHHHHHHHHHHCSCCCHHHHTTSEEEEESHHHHHHHHHTTCCEEE
T ss_pred ccccceeCCccccCCcccccCHHHHHHHhCCCCCCHHHHHHHHHHhCcccHHHHhCCCccccCCHHHHHHHHhcCCCcEE
Confidence 35689999999987656789999999999999999999999999999999999999999999999999999998999999
Q ss_pred eeecCCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEeeCc
Q psy13709 96 YTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDI 175 (405)
Q Consensus 96 ytG~~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~kt~i~~ns 175 (405)
|+||+||||+|||||++|+++++|||+.+|++++|+|||+++++++.+|++++++|+++++++|+|||+||++++||+|+
T Consensus 159 y~G~dPTag~LHLGh~v~~~~~~~lQ~~~g~~~iilI~D~~a~igd~lt~e~i~~n~~~~~~~~lA~GlDp~k~~i~~ns 238 (477)
T 1r6t_A 159 YTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDL 238 (477)
T ss_dssp EEEECCCTTCCBGGGHHHHHHHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEEEEHH
T ss_pred EEcccCCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEech
Confidence 99999998899999999999899999955788999999999999877999999999999999999999999999999999
Q ss_pred cccC--hHHHHHHHHHHhhhCHHHHHHHhCCCCCCccccchhhhhhhcCCCcCchhhhhccCCCCCceeeecCCchHHHH
Q psy13709 176 DFMN--PSFYLNILKIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFR 253 (405)
Q Consensus 176 ~~~~--~~~~~~v~~l~~~~t~~~~~~~~g~~~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~lvp~G~DQd~~~~ 253 (405)
+|.. ..|++++++|++|+|++++++++++.+++|+|+|+||+|||||+++.+++..++.+...+|+||||+|||||++
T Consensus 239 d~~~~l~~~~~~~~~l~r~~t~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~~~~~~VpvG~DQ~~~i~ 318 (477)
T 1r6t_A 239 DYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFR 318 (477)
T ss_dssp HHGGGCTTHHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHHHH
T ss_pred hhhcccHHHHHHHHHHHhhccHHHHHHHhCCCCCCChhhhhhHHHHHHHHHHhccchhhccccCCceeEeccccHHHHHH
Confidence 9982 47999999999999999999999988899999999999999999998888888533345799999999999999
Q ss_pred HHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCCCCceeccCCHHHHHHHhhcccccCCccchhhhhhcCCCCchHH
Q psy13709 254 LTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQATVEEHRELGGNCDVDI 333 (405)
Q Consensus 254 l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~~~~t~e~~~~~ggn~~v~~ 333 (405)
+|||+|+|+|+++|.++++++||+|+|+++|||||.+||+|||+|+|++|++||++|||||++.+++++++.||||++|+
T Consensus 319 l~Rdla~r~~~~~p~~l~~pll~gLdG~~~KMSKS~~nsaI~L~d~p~~i~kKi~~yA~t~~~~~~~~~~~~g~~pd~~~ 398 (477)
T 1r6t_A 319 MTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDV 398 (477)
T ss_dssp HHHHHGGGGTCCCCEEEEECCCEETTEEEEECCTTSTTCCCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCH
T ss_pred HHHHHHHHhCCCCceeeecccccCCCCCccccCCCCCCCceeecCCHHHHHHHhccccccCCccchhhccccCCCchHHH
Confidence 99999999999999999999999999976799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHhhhccccccCCC
Q psy13709 334 AYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQHQEAMKGVTEEVLAQYMTPRKLKFD 404 (405)
Q Consensus 334 ~~~~l~~f~~~d~e~eei~~~~~~G~l~~~elK~~La~~i~~~l~~~qe~r~~~~~~~~~~~~~~~~~~~~ 404 (405)
+++||++|+.+++++++|+++|.+|++++++||+.||++|++++++||+||++++++.|++||.+|+|.|.
T Consensus 399 v~~~l~~ft~~~~eieel~~~~~~G~~~~~~~K~~Lae~i~~~l~pirer~~~~~~~~v~~~~~~~~~~~~ 469 (477)
T 1r6t_A 399 SFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLAAA 469 (477)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTSCCCCC--
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhh
Confidence 99999999888999999999999999999999999999999999999999999999889999999999883
No 6
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=100.00 E-value=3.6e-100 Score=769.23 Aligned_cols=376 Identities=31% Similarity=0.599 Sum_probs=357.8
Q ss_pred CCccCCCcccCCCCCcccHHHHHHhhCCCCCCHHHHHHHHHHhhhhHHHHHHcCcccccCCHHHHHHHHhcCCCceeeee
Q psy13709 19 DDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTG 98 (405)
Q Consensus 19 ~~~v~pw~~~~~~~~~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG 98 (405)
...++||... ..+.+||+|||++|||++||+++++||+++||+++|+|+|||+|++|||++.+++++++|+|+++|+|
T Consensus 11 ~~~~~~~~~~--~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~l~RG~i~~~~d~~~ll~~~~~~~~~~vysG 88 (386)
T 3hzr_A 11 QTPSQLLQSF--TTRTTDYNQLINSVGINAITPQQIQRIEKLSGKAPHHYLSRGVFLAEKSLDKFLDDVEAKKPTFIFIQ 88 (386)
T ss_dssp --CCCSSCCC--CSSSCCSHHHHHHHTCEECCHHHHHHHHHHHTSCCCHHHHTTSEEEESSHHHHHHHHHTTCCEEEEEE
T ss_pred CCCcchhhhc--CcccccHHHHHHHhCCCcCCHHHHHHHHHHhCCCchHHHHCcCccccccHHHHHHHHhcCCCeEEEec
Confidence 4468999754 34679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEeeCcccc
Q psy13709 99 RGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFM 178 (405)
Q Consensus 99 ~~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~kt~i~~ns~~~ 178 (405)
|+|||. |||||++++++++|||+++|++++|+|||+++++.+.++++++++|+++++++++|||+||++++||+||+|.
T Consensus 89 ~~PTG~-lHLGh~v~~~~~~~lQ~~~g~~v~i~I~D~~a~~~r~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~ 167 (386)
T 3hzr_A 89 KYPQKE-VALEEYITLEFARYLQDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYILAFGFNEDKTFIYTDYQYF 167 (386)
T ss_dssp ECCCSS-CBGGGHHHHHHHHHHHHHHCCEEEEEECHHHHHHTTSCCHHHHHHHHHHHHHHHHHTCCCGGGEEEEEHHHHH
T ss_pred cCCCCC-ccHHHHHHHHHHHHHHHhcCCeEEEEeCchHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEeccHHH
Confidence 999985 9999999998999999998999999999999999888999999999999999999999999999999999998
Q ss_pred ChHHHHHHHHHHhhhCHHHHHHHhCCCCCCccccchhhhhhhcCCCcCchhhhhccCCCCCceeeecCCchHHHHHHHHH
Q psy13709 179 NPSFYLNILKIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDV 258 (405)
Q Consensus 179 ~~~~~~~v~~l~~~~t~~~~~~~~g~~~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~lvp~G~DQd~~~~l~rdl 258 (405)
..++..+++|++++|++++++++|+++++|+|+|+||+|||||+++++||+|+.. +++|+||||+||+||+++|||+
T Consensus 168 -~~~~~~~~~l~r~~t~~~~~~~~~~~~~~~~g~f~YP~LQaaD~~~~~~pdil~~--~~a~~VpvG~DQ~~hl~l~Rdl 244 (386)
T 3hzr_A 168 -GKMYRTISLVEKATAYNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSS--PARCLVLDSIKNVQFHSIIDQI 244 (386)
T ss_dssp -HHHHHHHHHHHHHCBHHHHTTTSCCCSSSBHHHHHHHHHHHHTTSGGGCTTTCSS--CCEEEEEEEGGGHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhhccHHHHHHHhCCCCCCchhhHhhHHHHHHHHhhhcchHhhCC--CCccccccccchHHHHHHHHHH
Confidence 4889999999999999999999999899999999999999999999999999864 3689999999999999999999
Q ss_pred hhhhCCCCceeeecccccCCCCCCccCCCCCCCCceeccCCHHHHHHHhhcccccCCccchhhhhhcCCCCchHHHHHHH
Q psy13709 259 APKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYL 338 (405)
Q Consensus 259 a~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~~~~t~e~~~~~ggn~~v~~~~~~l 338 (405)
|+|+|+++|+++++++||||+|+ +|||||+++|+|||+|+|++|++|||++|||||+.|.+++++.||+|++|++|+|+
T Consensus 245 a~r~n~~~p~~l~~~~l~gLdG~-~KMSKSd~~~~I~L~D~p~~i~kKI~k~A~t~g~~Td~~~~~~~g~p~~~~v~~~~ 323 (386)
T 3hzr_A 245 ATTLNFIQPTVLFHKMVPLLSGV-TKFDIPSDHNSILLSDNAKQVERKINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLL 323 (386)
T ss_dssp HHHHTCCCCEEEEECCCCCTTCT-TCCCCCCTTTSCBTTCCHHHHHHHHHHTSCCCCCSSHHHHHTTCCCGGGCHHHHHH
T ss_pred HHHcCCCCceEeecCeeeCCCCC-CccCcCCCCCeeecCCCHHHHHHHHHHhccCCCCCCcccccccCCCCccchHHHHH
Confidence 99999999999999999999997 49999988899999999999999999999999999999999999999999999999
Q ss_pred HhccCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHhhhcccccc
Q psy13709 339 TFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQHQEAMKGVTEEVLAQYMTPRKL 401 (405)
Q Consensus 339 ~~f~~~d~e~eei~~~~~~G~l~~~elK~~La~~i~~~l~~~qe~r~~~~~~~~~~~~~~~~~ 401 (405)
++|+.+++++++|+++|++|+++|++||+.||++|+++++|+|+||++++++.|++||++|++
T Consensus 324 ~~~~~~~~~~eei~~~~~~G~l~~g~~K~~lae~i~~~l~pirer~~~~~~~~~~~~~~~~~~ 386 (386)
T 3hzr_A 324 NIFSSDNAQVKDVEEKYSKGELLSGELKKIVSASMKDFIVAYDAKKKPITTAYLKAYISKTKF 386 (386)
T ss_dssp HHHCSCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHCC
T ss_pred HHHcCChhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCC
Confidence 999877889999999999999999999999999999999999999999999999999999985
No 7
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=100.00 E-value=2.3e-99 Score=774.28 Aligned_cols=389 Identities=57% Similarity=1.007 Sum_probs=342.6
Q ss_pred CCCCCCccCCCcccCC-----CCCcccHHHHHHhhCCCCCCHHHHHHHHHHhhhhHHHHHHcCcccccCCHHHHHHHHhc
Q psy13709 15 VDGEDDVVDPWNVTSK-----SMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSHRDMHSILNLYEQ 89 (405)
Q Consensus 15 ~~~~~~~v~pw~~~~~-----~~~~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~~~l~~RGl~~~~~d~~~ll~~~~~ 89 (405)
.++.++.||||+|++. +.++|||+|||++|||+|||+++++||+++||+++|+|++||+|++|+|+++|++++++
T Consensus 20 ~~~~~~~v~pw~~~~~~~~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~~~l~~RG~i~~~~d~~~l~~~l~~ 99 (432)
T 2ip1_A 20 TDVKEQVVTPWDVEGGVDEQGRAQNIDYDKLIKQFGTKPVNEETLKRFKQVTGREPHHFLRKGLFFSERDFTKILDLYEQ 99 (432)
T ss_dssp --------------------------CHHHHHHHHTCEECCHHHHHHHHHHHSSCCCHHHHTTSEEEEESHHHHHHHHHH
T ss_pred cccccceeCCCcccCccccccccccCCHHHHHHHhCCCcCCHHHHHHHHHhhCCccHHHHhCCCcccCCCHHHHHHHHhc
Confidence 4566799999999743 34679999999999999999999999999999999999999999999999999999998
Q ss_pred CCCceeeeecCCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCccchhcc-CCCHHHHHHHHHHHHHHHHHcCCCCCc
Q psy13709 90 GKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWK-NIKPEEAKKLAYENAKAIIACGFKQDS 168 (405)
Q Consensus 90 ~~~~~iytG~~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~-~lt~e~i~~~~~~~~~~~~A~G~dp~k 168 (405)
++|+++|+||+||||+|||||++|+++++|||+.+|++++++|||+++++.+ .+|++++++++.+++++|+|||+||++
T Consensus 100 g~~~~vy~G~dPTag~LHLGh~v~~~~l~~lQ~~~g~~~i~lI~D~ta~l~~~~~t~e~i~~~~~~~~~~~lA~GlDp~k 179 (432)
T 2ip1_A 100 GKPFFLYTGRGPSSDSMHLGHMIPFVFTKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKN 179 (432)
T ss_dssp TCCCEEEEEECCCSSCCBGGGHHHHHHHHHHHHHHTCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGGG
T ss_pred CCCeEEEEeecCCCCCccHHHHHHHHHHHHHHHHcCCeEEEEEecccceeCCCCCCHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 9999999999999889999999999999999995578888889999999977 489999999999999999999999999
Q ss_pred eEEeeCccccChHHHHHHHHHHhhhCHHHHHHHhCCCCCCccccchhhhhhhcCCCcCchhhhhccCCCCCceeeecCCc
Q psy13709 169 TFIFSDIDFMNPSFYLNILKIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQ 248 (405)
Q Consensus 169 t~i~~ns~~~~~~~~~~v~~l~~~~t~~~~~~~~g~~~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~lvp~G~DQ 248 (405)
++||+||+|....++..+++|++|++++++++++|+.+++|+|+|+||+|||||+++.++++.|+.+...+|+||||+||
T Consensus 180 ~~i~~nSd~~~~~~~~~~~~v~rm~~~~~~k~r~~~~~~~s~g~f~YPlLQAaDil~l~~d~~~~~~~~~~~lvp~G~DQ 259 (432)
T 2ip1_A 180 TFIFSDLQYMGGAFYETVVRVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAIDQ 259 (432)
T ss_dssp EEEEEHHHHCSHHHHHHHHHHHTSCCHHHHHHTTCCCTTSCHHHHHTHHHHHHTTSGGGCTTTTCCCTTCCEEEEEEGGG
T ss_pred eEEEeCchhhhhhHHHHHHHHHhhhcHHHHHHHhCCCCCCchhhhhHHHHHHHHHHHhccchhhcccCCCceEEEeccCc
Confidence 99999999976688999999999999999999999889999999999999999999988888775322358999999999
Q ss_pred hHHHHHHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCCCCceeccCCHHHHHHHhhcccccCCccchhhhhhcCCC
Q psy13709 249 DPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQATVEEHRELGGN 328 (405)
Q Consensus 249 d~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~~~~t~e~~~~~ggn 328 (405)
|||+++|||+|+|+|+++|.++++++||+|+|+++|||||.+||+|||+|+|++|++||++||||+++.+.+++++.|+|
T Consensus 260 ~~~i~l~Rdla~r~~~~~p~~l~~~ll~gLdG~~~KMSKS~~nsaI~L~d~p~~i~~KI~~yA~t~~~~~~~~~~~~g~~ 339 (432)
T 2ip1_A 260 DPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIFMTDTPKQIQKKINKYAFSGGQVSADLHRELGGN 339 (432)
T ss_dssp HHHHHHHHHHHHHHTSCCCEEEEECCCCCTTC--------CGGGCCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhCCCCceeeccccccCCCCCccccCCCCCCCeEeccCCHHHHHHHhhhhcccCCccchhhccccCCC
Confidence 99999999999999999999999999999999878999999998999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhccCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHhhhccccccCC
Q psy13709 329 CDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQHQEAMKGVTEEVLAQYMTPRKLKF 403 (405)
Q Consensus 329 ~~v~~~~~~l~~f~~~d~e~eei~~~~~~G~l~~~elK~~La~~i~~~l~~~qe~r~~~~~~~~~~~~~~~~~~~ 403 (405)
|++|++++||++|+.+++++++|+++|.+|+++|++||+.||++|+++++++|+||++++++++++|+.+|++.+
T Consensus 340 pd~~~v~~~l~~f~~~~~eieel~~~~~~G~~~~~~~K~~La~~i~~~l~~~rer~~~~~~~~~~~~~~~~~~~~ 414 (432)
T 2ip1_A 340 PDVDVAYQYLSFFKDDDVFLKECYDKYKSGELLSGEMKKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKLVW 414 (432)
T ss_dssp TTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHSCCCCCC
T ss_pred chHHHHHHHHHHHCCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHH
Confidence 999999999999987899999999999999999999999999999999999999999999988999999999865
No 8
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=5.3e-97 Score=747.45 Aligned_cols=366 Identities=45% Similarity=0.783 Sum_probs=329.2
Q ss_pred CCCccCCCcccCCCCCcccHHHHHHhhCCCCCCHHHHHHHHHHhhhhHHHHHHcCcccccCCHHHHHHHHhcCCCceeee
Q psy13709 18 EDDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYT 97 (405)
Q Consensus 18 ~~~~v~pw~~~~~~~~~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iyt 97 (405)
+++.||||+|++ .+||+|||++|||++||+++++||+++||+++|+|++||+|++|+|++.+++++++|+|+++|+
T Consensus 3 ~~~~v~pw~v~~----~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~~~Rg~i~~~~d~~~l~~~~~~~~p~~i~s 78 (392)
T 3jxe_A 3 EEFKVTPWEVEG----VVDYDKLIKHFGTSPLTEDLLEKTAELTKSELPIFFRRKFFFSHRDYDLILKDYEEGRGFFLYT 78 (392)
T ss_dssp CCCEECSSCEES----CCCHHHHHHHTTCEECCHHHHHHHHHHTTSCCCHHHHTTSEEEEESHHHHHHHHHTTCCCEEEE
T ss_pred CCCeeCCccccC----cccHHHHHHHhCCCcCCHHHHHHHHHHhCCCcHHHHhCcCcccccCHHHHHHHHhcCCCeEEEe
Confidence 479999999983 3999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCccchhccC-CCHHHHHHHHHHHHHHHHHcCCCCCceEEeeCcc
Q psy13709 98 GRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKN-IKPEEAKKLAYENAKAIIACGFKQDSTFIFSDID 176 (405)
Q Consensus 98 G~~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~~-lt~e~i~~~~~~~~~~~~A~G~dp~kt~i~~ns~ 176 (405)
|++||| +|||||++++++++|||+.+|++++|+|||+|+++.+. ++++++++++++++++++|||+||++++||.||+
T Consensus 79 G~~PTG-~lHLGh~v~~~~~~~lQ~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~qS~ 157 (392)
T 3jxe_A 79 GRGPSG-PMHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPDKTFIFQNSE 157 (392)
T ss_dssp EECCSS-CCBHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEEEETTT
T ss_pred ccCCCC-chhHHHHHHHHHHHHHHHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHHHHHHhCcCccceEEEECch
Confidence 999995 99999999999899999966788999999999998774 8999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHhhhCHHHHHHHhCCCCCCccccchhhhhhhcCCCcCchhhhhccCCCCCceeeecCCchHHHHHHH
Q psy13709 177 FMNPSFYLNILKIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTR 256 (405)
Q Consensus 177 ~~~~~~~~~v~~l~~~~t~~~~~~~~g~~~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~lvp~G~DQd~~~~l~r 256 (405)
|. .++..++.+++++|++++++++++++++|+|+|+||+|||||+++ + +.+|+||||+||+||+++||
T Consensus 158 ~~--~~~~~~~~l~~~~t~~~~~~~~~~~~~~~~g~f~YP~LQaaDil~------~----~~a~~vpvG~DQ~~hl~l~R 225 (392)
T 3jxe_A 158 FT--KIYEMAIPIAKKINFSMAKAVFGFTEQSKIGMIFFPAIQIAPTFF------E----RKRCLIPAAIDQDPYWRLQR 225 (392)
T ss_dssp ST--HHHHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGGS------S----SSCEEEEEEGGGHHHHHHHH
T ss_pred hH--HHHHHHHHHHhhCCHHHHhhhhccCCCCchHHHHHHHHHHhhHHh------h----cCCceeecccchHHHHHHHH
Confidence 97 389999999999999999999999999999999999999999884 2 13799999999999999999
Q ss_pred HHhhhhCCCCceeeecccccCCCCCCccCCCCCCCCceeccCCHHHHHHHhhcccccCCccchhhhhhcCCCCchHHHHH
Q psy13709 257 DVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQ 336 (405)
Q Consensus 257 dla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~~~~t~e~~~~~ggn~~v~~~~~ 336 (405)
|+|+|+|+++|.++++++||+|+|+++|||||.+||+|||+|+|++|++|||+||+||++.+++++++.||||++|++|+
T Consensus 226 dla~r~n~~~p~~l~~~~l~gLdG~~~KMSKS~~ns~I~L~D~p~~I~kKI~k~A~td~~~~~~~~~~~~~~P~~~~~~~ 305 (392)
T 3jxe_A 226 DFAESLGYYKTAALHSKFVPSLTSLSGKMSASKPETAIYLTDSPEDVEKKVWKFTLTGGRPTLKEQREKGGEPEKCVVFK 305 (392)
T ss_dssp HHTGGGTSCCCEEEEECCCCCSSCSSSCCCTTSGGGCCBTTCCHHHHHHHHHTCC--------------------CHHHH
T ss_pred HHHHHcCCCCCeeeecccccCCCCCccccccCCCCCeeeCCCCHHHHHHHHHhhccCCCCcccccccccCCCCchhHHHH
Confidence 99999999999999999999999987799999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcc-CChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHhhhcccccc
Q psy13709 337 YLTFFL-EDDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQHQEAMKGVTEEVLAQYMTPRKL 401 (405)
Q Consensus 337 ~l~~f~-~~d~e~eei~~~~~~G~l~~~elK~~La~~i~~~l~~~qe~r~~~~~~~~~~~~~~~~~ 401 (405)
|+++|+ .+++++++|+++|++|+++|++||+.||++|+++++|+|+||++++ +.|++||..+++
T Consensus 306 ~l~~~~~~~~~~~eel~~~~~~G~l~~gdlK~~lae~i~~~l~pirer~~~~~-~~v~~~l~~g~~ 370 (392)
T 3jxe_A 306 WLEIFFEEDDKKLKERYYACKNGELTCGECKRYLISKIQEFLKEHQRRRKKAE-KLVEKFKYTGKL 370 (392)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSHHHHHTTSHH
T ss_pred HHHHHHcCCcchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCcc
Confidence 999997 5789999999999999999999999999999999999999999999 799999998876
No 9
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=7.6e-97 Score=754.79 Aligned_cols=371 Identities=44% Similarity=0.812 Sum_probs=354.3
Q ss_pred CCCcccHHHHHHhhCCCCCCHHHHHHHHHHhhhhHHHHHHcCcccccCCHHHHHHHHhcCCCceeeeecCCCCCCcchhh
Q psy13709 31 SMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGH 110 (405)
Q Consensus 31 ~~~~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~PT~~slHlGh 110 (405)
+..++||+|||++|||++||+++++||+++||+++|+|+|||+|++|+|+++|++++++|+|+++||||+||||+|||||
T Consensus 30 ~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~l~RG~i~~~~dl~~ll~~l~~g~p~~vytG~dPTagsLHLGH 109 (451)
T 3foc_A 30 EAAAVAYEDIITRFGAAPITDDLLKRFETVTGTKAHPMLRRGLFYAHRDFEEFLSYYEKGHPIYIYTGRGPSSGALHLGH 109 (451)
T ss_dssp HHHHHHHHHHHHTTTCBCCCHHHHHHHHHHHTCCCCHHHHTTSEEEEESHHHHHHHHHTTCCEEEEEEECCCSSCCBHHH
T ss_pred ccccCcHHHHHHHhCCCcCCHHHHHHHHHHhCCChHHHHhCCCccccccHHHHHHHHhcCCCeEEEecCCCCCCCccHHH
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred hHHHHHHHHHHhcCCccEEEEecCccchhcc-CCCHHHHHHHHHHHHHHHHHcCCCCCceEEeeCcccc-ChHHHHHHHH
Q psy13709 111 LIPFMFTKWLQDVFDVPLVIQLTDDEKSLWK-NIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFM-NPSFYLNILK 188 (405)
Q Consensus 111 li~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~-~lt~e~i~~~~~~~~~~~~A~G~dp~kt~i~~ns~~~-~~~~~~~v~~ 188 (405)
++++++++|||+++|++++|+|||+++++++ .++++++++|+++++++|+|||+||++++||+||+|+ ...++..+.+
T Consensus 110 ~v~~~~l~~lQ~~~g~~v~I~IgD~~a~~~r~~lt~E~I~~n~~~~~~~~lA~GlDpekt~i~~nSd~~~~~~~~~~l~~ 189 (451)
T 3foc_A 110 LLPFIFTKYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCL 189 (451)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHTTSTTHHHHHHH
T ss_pred HHHHHHHHHHHHccCceEEEEeeCcHHhhcccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCchhhcchhHHHHHHH
Confidence 9999999999999999999999999999877 6899999999999999999999999999999999998 4789999999
Q ss_pred HHhhhCHHHHHHHhCCCCCCccccchhhhhhhcCCCcCch----------------------------------------
Q psy13709 189 IQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTF---------------------------------------- 228 (405)
Q Consensus 189 l~~~~t~~~~~~~~g~~~~~s~g~~~YpllQaaD~~~~~f---------------------------------------- 228 (405)
|++++|+++++++.++.+++|+|+|+||+|||||+++++|
T Consensus 190 L~r~~Tv~~m~~~~~f~~~is~gef~YPlLQAaDil~~~~d~~~~~~vp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~ 269 (451)
T 3foc_A 190 VDRMLPISQLRASFGFSNDANVGYAAFPPKQMLPVYSTYFDGLPFTRVPLPVGTGNEDAADAVSTKKASKKTPKKDAVLS 269 (451)
T ss_dssp HHHTCCHHHHHHHHCCCSSSCHHHHTCHHHHHGGGSGGGGTTSGGGCCBCC-------------------------CCCC
T ss_pred HHhhCCHHHHHhhcccCCCCchHHHhhHHHHHHHHHHhhcCCCCccccccccccccchhhhhhhhhhccccccchhhhhh
Confidence 9999999999999999999999999999999999998888
Q ss_pred -----hhhhccCC---CCCceeeecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCCCCceeccCCH
Q psy13709 229 -----PLIFNKNH---KVPCLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTP 300 (405)
Q Consensus 229 -----~~l~~~~~---~~~~lvp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p 300 (405)
|++|+..+ +++|+||||.||+||+++|||+|+|+|+++|.++++++||||+|+++|||||.+||+|+|+|+|
T Consensus 270 ~a~~~~~~~~~~~~~~~~~~~VPvG~DQ~~hlel~Rdia~rfn~~~p~~~~~~~l~gLdG~~~KMSKS~~ns~I~l~D~p 349 (451)
T 3foc_A 270 PVHVVEELFPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLTDTP 349 (451)
T ss_dssp HHHHHHHHCGGGGGBCCCEEEEEECTTTHHHHHHHHHHTTTTTSCCCEEEEECCCCBTTBTTCCCCTTCGGGSCBTTCCH
T ss_pred hcccchhhcccccccccccceeeeecchHHHHHHHHHHHHHhCCCCCeeecCCcccCCCCCCCccCCCCCCCeeeecCCH
Confidence 67765322 3789999999999999999999999999999999999999999987799999999999999999
Q ss_pred HHHHHHhhcccccCCccchhhhhhcCCCCchHHHHHHHHhccCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHH
Q psy13709 301 KQVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQH 380 (405)
Q Consensus 301 ~~i~~KI~k~A~t~~~~t~e~~~~~ggn~~v~~~~~~l~~f~~~d~e~eei~~~~~~G~l~~~elK~~La~~i~~~l~~~ 380 (405)
++|++|||++||||++.+++++++.||||++|++|+||++|+.+++++++|+++|++|+++|++||+.||+.|+++++|+
T Consensus 350 ~~I~kKI~k~A~Td~~~~~~~~~~~~g~p~~~~v~~~l~~f~~~~~~~eel~~~y~~G~l~~g~lK~~Lae~i~~~l~pi 429 (451)
T 3foc_A 350 AQIKNKINRYAFSGGRDTEEEHRAFGADLSVDVSVRYLEVFMKDDAELEKLKADYKTGKLLTGEVKATLIGILQGLIKEH 429 (451)
T ss_dssp HHHHHHHHHHSCCCSCSSHHHHHTTCCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccCCCCccchhcccCCCCcchhhHHHHHHHHcCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999988999999999999999999999999999999878889999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHhhhcccccc
Q psy13709 381 QEAMKGVTEEVLAQYMTPRKL 401 (405)
Q Consensus 381 qe~r~~~~~~~~~~~~~~~~~ 401 (405)
|+||++++++.|++||++|+|
T Consensus 430 rer~~~l~~d~v~~f~~~~~~ 450 (451)
T 3foc_A 430 AERRDKVDTTMIESFTVKKEL 450 (451)
T ss_dssp HHHHHTCCHHHHHHHHCCTTC
T ss_pred HHHHHHHHHHHHHHhhCcccC
Confidence 999999999999999999997
No 10
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=100.00 E-value=4.5e-91 Score=702.03 Aligned_cols=364 Identities=29% Similarity=0.448 Sum_probs=331.0
Q ss_pred CCCccCCCcccCCCCCcccHHHHHHhhCCCCCCHHHHHHHHHHhhhhHHHHHHcCcccccCCHHHHHHHHhcCCCceeee
Q psy13709 18 EDDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYT 97 (405)
Q Consensus 18 ~~~~v~pw~~~~~~~~~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iyt 97 (405)
.+|+||||+|+ +.+||+|||++|||++||+.| +++++||++||+|+|||+||+|||++.+++++++|+|+++||
T Consensus 2 ~~~~v~pw~~~----~~~dy~kl~~~fg~~~i~~~l--~~~~~~~~~~h~~lrRgi~f~hRd~d~il~~~e~gk~~~v~s 75 (372)
T 3a04_A 2 AAERLDPWGAV----EIKDYDRLLRTFGIRPFSEVL--PLLRKAGMEPSFLMRRGIIFGHRDFDKILEAKARGERVAVLT 75 (372)
T ss_dssp ----CCSSCST----TTTTTHHHHHTTTCEEGGGGH--HHHHHTTCCCCHHHHTTSEEEEESHHHHHHHHHTTCCCEEEE
T ss_pred CCCeeCCCCCC----CCcCHHHHHHHhCCCCcchHH--HHHHhccCCcchhhccceeeeccCHHHHHHHHHcCCCCEEEe
Confidence 36789999998 349999999999999999765 788999999999999999999999999999999999999999
Q ss_pred ecCCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCccchhccCCC-HHHHHHHHHHHHHHHHHcCCCCCceEEeeCcc
Q psy13709 98 GRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKNIK-PEEAKKLAYENAKAIIACGFKQDSTFIFSDID 176 (405)
Q Consensus 98 G~~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~~lt-~e~i~~~~~~~~~~~~A~G~dp~kt~i~~ns~ 176 (405)
|++||| +||||||+++++.+|+|+. +..++++|+|+||++.+..+ .+.++.++++++++|+|||+||++++||.||+
T Consensus 76 G~~PTG-~lHLGhyv~~~~~~~lq~~-~~~~~~~IaD~ha~t~~~~~~~e~~r~~~~~~~~~~lA~GlDP~kt~if~qS~ 153 (372)
T 3a04_A 76 GFMPSG-KFHFGHKLTVDQLIYLQKN-GFKVFVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALGLDPKDTEFYFQTN 153 (372)
T ss_dssp EECCCS-CCBHHHHHHHHHHHHHHHT-TCEEEEEECHHHHHHTTCCCHHHHHHHHHHTTHHHHHHHTCCTTTCEEEEGGG
T ss_pred CcCCCc-HhHHHHHHHHHHHHHHHhC-CCeEEEEEecchhhccCCCCCHHHHHHHHHHHHHHHHHcCCChHHcchhhhcc
Confidence 999996 8999999999999999997 67889999999999877655 56788999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHhhhCHHHHHHHhCCCCCCccccchhhhhhhcCCCcCchhhhhccCCCCCceeeecCCchHHHHHHH
Q psy13709 177 FMNPSFYLNILKIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTR 256 (405)
Q Consensus 177 ~~~~~~~~~v~~l~~~~t~~~~~~~~g~~~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~lvp~G~DQd~~~~l~r 256 (405)
|. ..++..+..+++.++++++++.++ ..+.|.+.||++|||||+..+++..++++ +|+||||.||+||+++||
T Consensus 154 ~~-~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~yP~lqAaDil~~~~d~~~gy~---a~~VPVG~DQ~~hleltR 226 (372)
T 3a04_A 154 RG-TPYFRLIQLFSGKVTAAEMEAIYG---ELTPAKMMASLTQAADILHVQLDEYGGYR---HVVVPVGADQDPHLRLTR 226 (372)
T ss_dssp SC-HHHHHHHHHHTTSSCHHHHHHHHS---SCCHHHHHHHHHHHHHHHGGGSGGGTCCC---CEEEEEEGGGHHHHHHHH
T ss_pred ch-HHHHHHHHHHHhhhhHHHHhhhhh---ccCcccccCCcchhHHHhhhcCccccCcc---ceecccchhhHHHHHHHH
Confidence 86 678888899999999999999886 47889999999999999987777766654 899999999999999999
Q ss_pred HHhhhhC----CCCceeeecccccCCCCCCccCCCCCCCCceeccCCHHHHHHHhhcccccCCccchhhhhhcCCCCchH
Q psy13709 257 DVAPKLG----YVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQATVEEHRELGGNCDVD 332 (405)
Q Consensus 257 dla~r~~----~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~~~~t~e~~~~~ggn~~v~ 332 (405)
|+|+|+| +++|++++++++|||+| .|||||.+||+|+|+|+|++|++|||+ |||||+.+.+++++.||+|++|
T Consensus 227 diA~rfn~~~~~~~P~~~~~~~~pgldG--~KmS~S~~ns~I~l~D~p~~i~kKI~k-a~td~~~~~~~~~~~~G~p~~~ 303 (372)
T 3a04_A 227 DLADRMAGVVELERPASTYHKLQPGLDG--RKMSSSRPDSTIFLTDPPEVARNKLFR-ALTGGRATAEEQRRLGGVPEVC 303 (372)
T ss_dssp HHHHHTTTTSCCCCCEEEEECCCBCTTS--SBCCTTSGGGSCBTTCCHHHHHHHHHT-CCCSCCSSHHHHHHHCCCGGGC
T ss_pred HHHHHhcCcccccChhhhhhcccCCCCC--CccCCCCCCcccccCCCHHHHHHHHhc-CccCCCCCcccccccCCCCchh
Confidence 9999998 67899999999999999 799999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHhc-cCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHhhhcccc
Q psy13709 333 IAYQYLTFF-LEDDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQHQEAMKGVTEEVLAQYMTPR 399 (405)
Q Consensus 333 ~~~~~l~~f-~~~d~e~eei~~~~~~G~l~~~elK~~La~~i~~~l~~~qe~r~~~~~~~~~~~~~~~ 399 (405)
++|+|+.++ .+|++++++|+++|++|+++||+||+.|++.|+++++|+|+||+++++...+-++.+|
T Consensus 304 ~i~~~~l~~~~~d~~e~~ei~~~y~~G~l~~ge~K~~l~e~l~~~l~p~rer~e~~~~~~~kile~~r 371 (372)
T 3a04_A 304 SVYHMDLYHLMPDDGEVKHIYTSCRLGKILCGECKQIAWEKLERFLAEHQSRLEKAKTIAWKLVEPPR 371 (372)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCC
T ss_pred hHHHHHHHccCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccC
Confidence 999985554 5688999999999999999999999999999999999999999999975444445555
No 11
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=100.00 E-value=1.3e-63 Score=501.49 Aligned_cols=303 Identities=21% Similarity=0.302 Sum_probs=265.6
Q ss_pred HHHHHHcCcccccCCHHHHHHHHhcCCCceeeeecCCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCccchhcc--C
Q psy13709 65 VHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWK--N 142 (405)
Q Consensus 65 ~~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~--~ 142 (405)
.-.|++|| +..+.+.++|.+.+++|+++++|+||+||| +|||||+++++.++|||++ |+.++++|||+|+++.+ .
T Consensus 9 ~~~l~~r~-~~e~~~~~~L~~~l~~~~~~~iy~G~~PTg-~lHlG~l~~l~~~~~lQ~~-G~~~~~~iaD~~a~~~~ps~ 85 (364)
T 2cya_A 9 RFNRIARN-TVEIVTEEELKGLLASGARIKGYIGYEPSG-VAHIGWLVWMYKVKDLVEA-GVDFSVLEATWHAYINDKLG 85 (364)
T ss_dssp HHHHHHTT-CSEEETHHHHHHHHHHCSCCEEEEEECCCS-SCBTHHHHHHHHHHHHHHT-TCEEEEEECHHHHHHTTGGG
T ss_pred HHHHHHcC-chhcCCHHHHHHHHhcCCCCEEEeccCCCC-CccHhHHHHHHHHHHHHHC-CCCEEEEEeCcchhhCCCCC
Confidence 45789999 777778899999999899999999999996 8999999999999999997 46788889999999977 3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCceEEeeCcccc-ChHHHHHHHHHHhhhCHHHHHHHh---CC---CCCCccccchh
Q psy13709 143 IKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFM-NPSFYLNILKIQKLVNGTTVKAIF---GL---KDFDSVGKFSF 215 (405)
Q Consensus 143 lt~e~i~~~~~~~~~~~~A~G~dp~kt~i~~ns~~~-~~~~~~~v~~l~~~~t~~~~~~~~---g~---~~~~s~g~~~Y 215 (405)
.+++++++|+.+++++++|||+||+++.||.||+|+ ...+|..+.++++.+|+++++++. ++ ..++++|+|+|
T Consensus 86 ~~~e~i~~~~~~~~~~~la~G~dp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~r~~~~k~r~~~~~~i~~g~~~Y 165 (364)
T 2cya_A 86 GDMDLIRAAARIVRRVMEAAGVPVERVRFVDAEELASDKDYWGLVIRVAKRASLARVRRALTIMGRRAEEAEVDASKLIY 165 (364)
T ss_dssp GCHHHHHHHHHHHHHHHHHTTCCGGGCEEEEHHHHHTCHHHHHHHHHHHHTSCHHHHHTTC------CCGGGSCTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhcchHHHHHHHHHHCcCcHHHHHcCchhhhhhcCCCCccchhhhh
Confidence 689999999999999999999999999999999998 457899999999999999987642 22 23588999999
Q ss_pred hhhhhcCCCcCchhhhhccCCCCCceeeecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCC---------------
Q psy13709 216 PAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQG--------------- 280 (405)
Q Consensus 216 pllQaaD~~~~~f~~l~~~~~~~~~lvp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G--------------- 280 (405)
|+|||||+++ ++ .+++|+|+||+||+++|||+|+|+|+++|.++++++||+|+|
T Consensus 166 P~LQaaDil~------~~-----~~~v~~G~DQ~~~~~l~rdla~r~~~~~p~~l~~~ll~~l~g~~~~~~~~~~~~~~~ 234 (364)
T 2cya_A 166 PLMQVSDIFY------MD-----LDIALGGMDQRKAHMLARDVAEKLGRKKPVAIHTPIISSLQGPGRMEASQGEIDDVL 234 (364)
T ss_dssp HHHHHHHHHH------TT-----CSEEEEEGGGHHHHHHHHHHHTTTTCCCCEEEEECCCBCSSCC--------------
T ss_pred HHHHHhhHHh------cC-----CCEEeccchHHHHHHHHHHHHHHcCCCCceeeccceeeCCCcccccccccccccccc
Confidence 9999999763 33 588999999999999999999999999999999999999997
Q ss_pred CCccCCCCCCCCceeccCCHHHHHHHhhcccccCCccchhhhhhcCCCCchHHHHHHHHhccC-----------------
Q psy13709 281 ANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLE----------------- 343 (405)
Q Consensus 281 ~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~~~~t~e~~~~~ggn~~v~~~~~~l~~f~~----------------- 343 (405)
+++|||||+++++|||+|+|++|++||++ ||||++ +++.+++++|+++|+.
T Consensus 235 ~g~KMSKS~~~~~I~L~d~p~~i~~Ki~~-a~td~~-----------~~~~~~v~~~~~~~~f~~~~~~~~i~r~~~~G~ 302 (364)
T 2cya_A 235 AEVKMSKSKPETAVFVVDSDDDIRRKIRK-AYCPAK-----------QVQGNPVLEIARYILFARDGFTLRVDRPAKYGG 302 (364)
T ss_dssp --CBCCSSSGGGSCBTTCCHHHHHHHHHT-SCCCTT-----------CCTTCHHHHHHHHTTTTSTTCCEECC-------
T ss_pred cccccCCCCCCCEeeccCCHHHHHHHHHh-CcCCCC-----------CCCCCcHHHHHHHHhcccccCceeeeccccccC
Confidence 56999999888899999999999999999 999864 4455778999999863
Q ss_pred --ChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHH---HhHHHHHhh
Q psy13709 344 --DDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQHQEAMK---GVTEEVLAQ 394 (405)
Q Consensus 344 --~d~e~eei~~~~~~G~l~~~elK~~La~~i~~~l~~~qe~r~---~~~~~~~~~ 394 (405)
+.+++++|+++|.+|++++++||++||++|+++++|+|++|+ ++. +.++.
T Consensus 303 ~~~~~~~~el~~~~~~g~~~~~~lK~~la~~l~~~l~pir~~~~~~~~~~-~~~~~ 357 (364)
T 2cya_A 303 PVEYTSYEELERDYTDGRLHPLDLKNAVAESLIEVVRPIRGAVLGDPAMK-RALEA 357 (364)
T ss_dssp -CEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHTSHHHH-HHHHH
T ss_pred CCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcChHHH-HHHHH
Confidence 234899999999999999999999999999999999999999 454 34443
No 12
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=100.00 E-value=6.1e-64 Score=501.04 Aligned_cols=310 Identities=24% Similarity=0.359 Sum_probs=251.8
Q ss_pred HHHHHHcCcccccCCHHHHHHHHhcCCCceeeeecCCCCCCcchhh-hHHHHHHHHHHhcCCccEEEEecCccchhccC-
Q psy13709 65 VHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGH-LIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKN- 142 (405)
Q Consensus 65 ~~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~PT~~slHlGh-li~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~~- 142 (405)
.-.+++||+ ..+.+.+.|.+.+++++++++|+||+||| +||||| +++++.++|||++ |+.++++|||+|+++.+.
T Consensus 14 ~~~l~~r~~-~e~~~~~~L~~~L~~~~~~~vy~G~~PTg-~lHlGhyl~~l~~~~~lQ~~-G~~~~~~i~D~~a~~~~~~ 90 (348)
T 2j5b_A 14 RLTQLLSIA-EECETLDRLKQLVDSGRIFTAYNGFEPSG-RIHIAQALITVMNTNNMIEC-GGQMIIYIADWFAKMNLKM 90 (348)
T ss_dssp HHHHHHTTC-SEESCHHHHHHHHHHTCCEEEEEEECCCS-SCBHHHHHHHHHHHHHHHHT-TEEEEEEECHHHHHHTTGG
T ss_pred HHHHHHcCc-ccccCHHHHHHHHhcCCCCEEEeccCCCC-CCchhHHHHHHHHHHHHHHc-CCcEEEEeccchhhhCCCC
Confidence 457889996 34445555666666678999999999995 999999 6888889999997 577888899999998775
Q ss_pred -CCHHHHHHHHHHHHHHHHHcCCCCCceEEeeCcccc--ChHHHHHHHHHHhhhCHHHHHH---HhCC--CCCCccccch
Q psy13709 143 -IKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFM--NPSFYLNILKIQKLVNGTTVKA---IFGL--KDFDSVGKFS 214 (405)
Q Consensus 143 -lt~e~i~~~~~~~~~~~~A~G~dp~kt~i~~ns~~~--~~~~~~~v~~l~~~~t~~~~~~---~~g~--~~~~s~g~~~ 214 (405)
.+++++++|+++++++++|||+||+++.||.||+|+ ...+|..+..++++++++++.+ ..++ ++++|+|+|+
T Consensus 91 ~~~~e~i~~~~~~~~~~~la~Gldp~k~~i~~qs~~~~~~~~~~~~~~~v~~~~~~~~m~~~~~~~~r~~~~~i~~g~f~ 170 (348)
T 2j5b_A 91 NGDINKIRELGRYFIEVFKACGINLDGTRFIWASEFIASNPSYIERMLDIAEFSTISRVKRCCQIMGRNESDCLKASQIF 170 (348)
T ss_dssp GGCHHHHHHHHHHHHHHHHHTTCCGGGEEEEEHHHHHHHCHHHHHHHHHHHHHHHHHHHTC-----------------CC
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCccceEEEECCHhhhhhhHHHHHHHHHHhheeHHHHHhhhhhhhhhccCCcChHHHh
Confidence 689999999999999999999999999999999996 2478888888888888888764 3333 3578999999
Q ss_pred hhhhhhcCCCcCchhhhhccCCCCCceeeecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCCCCce
Q psy13709 215 FPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAI 294 (405)
Q Consensus 215 YpllQaaD~~~~~f~~l~~~~~~~~~lvp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI 294 (405)
||+|||||+++ ++. ...+++|||+|||||+++|||+|+|+|+..|.++++++||+|+|+++|||||.+|++|
T Consensus 171 YP~lQaaDil~-----~~~---~~~~~~~~G~DQ~~~i~l~Rdia~r~~~~~p~~~~~~~l~gL~dg~~KMSKS~~~~~I 242 (348)
T 2j5b_A 171 YPCMQAADVFE-----LVP---EGIDICQLGIDQRKVNMLAIEYANDRGLKIPISLSHHMLMSLSGPKKKMSKSDPQGAI 242 (348)
T ss_dssp HHHHHHHHHHH-----SST---TCCSEECCBGGGHHHHHHHHHHHHHTTCCCCEEEEBCCCCCTTCSSCCCSTTCGGGSC
T ss_pred hHHHHHHHHHH-----Hhc---CCCcEEEeccChHHHHHHHHHHHHHhCCCCceeecCccccCCCCcccccccCCCCCeE
Confidence 99999999774 222 1268899999999999999999999999999999999999997655799999987799
Q ss_pred eccCCHHHHHHHhhcccccCCccchhhhhhcCCCCchHHHHHHHHhcc-----------CChhhHHHHHHHHhcCCCCHH
Q psy13709 295 FLTDTPKQVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFL-----------EDDDKLEQIRKNYTSGALLTG 363 (405)
Q Consensus 295 ~L~D~p~~i~~KI~k~A~t~~~~t~e~~~~~ggn~~v~~~~~~l~~f~-----------~~d~e~eei~~~~~~G~l~~~ 363 (405)
||+|+|++|++||++ |+||++ +++ ++++.|+++++ .+.+++++|+++|+ | ++++
T Consensus 243 ~L~d~p~~i~kKI~k-a~td~~-----------~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~el~~~~~-~-~~~~ 307 (348)
T 2j5b_A 243 FMDDTEQEVSEKISR-AYCTDE-----------TFD-NPIFEYIKYLLLRWFGTLNLCGKIYTDIESIQEDFS-S-MNKR 307 (348)
T ss_dssp BTTCCHHHHHHHHHH-SCCCSS-----------STT-CHHHHHHHHTHHHHHSCEEETTEEESSHHHHHHHHT-T-SCHH
T ss_pred eecCCHHHHHHHHhc-ccCCCC-----------CCC-CchHhHHHHhhhhhhcccccccCCcchHHHHHHHHc-c-cCHH
Confidence 999999999999999 999974 344 45566665532 13568999999999 5 8999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHH----HhHHHHHhhhccccc
Q psy13709 364 ELKKILIDTITPIVTQHQEAMK----GVTEEVLAQYMTPRK 400 (405)
Q Consensus 364 elK~~La~~i~~~l~~~qe~r~----~~~~~~~~~~~~~~~ 400 (405)
+||++||++|+++++|+|++++ +...+.|++||.+||
T Consensus 308 ~~K~~la~~l~~~l~pir~~~~~~~~~~~~~~v~~~~~~~~ 348 (348)
T 2j5b_A 308 ELKTDVANYINTIIDLVREHFKKPELSELLSNVKSYQQPSK 348 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSGGGHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhccCCC
Confidence 9999999999999999999964 556688999998886
No 13
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=8.3e-64 Score=504.40 Aligned_cols=305 Identities=20% Similarity=0.286 Sum_probs=269.5
Q ss_pred HHHHHHcCcccccCCHHHHHHHHhcCCCceeeeecCCCCCCcchhh-hHHHHHHHHHHhcCCccEEEEecCccchhccC-
Q psy13709 65 VHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGH-LIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKN- 142 (405)
Q Consensus 65 ~~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~PT~~slHlGh-li~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~~- 142 (405)
.-.|++||++..+.+.++|++.+++|+++++|+||+||| +||||| +++++.++|||++ |+.++++|||+|+++.+.
T Consensus 6 ~~~l~~r~~~~e~~~~~~l~~~l~~~~~~~vy~G~~PTg-~lHlG~yl~~l~~~~~lQ~~-G~~~~~~iaD~ha~~~~~~ 83 (375)
T 2cyc_A 6 RINLVLKKPTEEVLTVENLRHLFEIGAPLQHYIGFEISG-YIHLGTGLMAGAKIADFQKA-GIKTRVFLADWHSWINDKL 83 (375)
T ss_dssp HHHHHHSTTEEEEETHHHHHHHHHHTCCCBEEEEECCCS-CCBHHHHHHHHHHHHHHHHT-TCBCEEEECHHHHHHTTGG
T ss_pred HHHHHhcCCceeecCHHHHHHHHhcCCCcEEEeCCCCCC-CcCchHHHHHHHHHHHHHHC-CCcEEEEecCcEEEcCCCC
Confidence 357899998888889999999999889999999999996 999999 8888889999998 467888899999999773
Q ss_pred -CCHHHHHHHH-HHHH----HHHHHcCCCCCceEEeeCcccc-ChHHHHHHHHHHhhhCHHHHHHHh---CC--CCCCcc
Q psy13709 143 -IKPEEAKKLA-YENA----KAIIACGFKQDSTFIFSDIDFM-NPSFYLNILKIQKLVNGTTVKAIF---GL--KDFDSV 210 (405)
Q Consensus 143 -lt~e~i~~~~-~~~~----~~~~A~G~dp~kt~i~~ns~~~-~~~~~~~v~~l~~~~t~~~~~~~~---g~--~~~~s~ 210 (405)
.+++++++|+ .+++ ++++|||+||+++.||.||+|. ...+|..+.+++++++++++.++. ++ ++++|+
T Consensus 84 g~~~e~i~~~~~~~~~~~~~~~~la~G~dp~k~~i~~qS~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~k~r~~~~~i~~ 163 (375)
T 2cyc_A 84 GGDLEVIQEVALKYFKVGMEKSIEVMGGDPKKVEFVLASEILEKGDYWQTVIDISKNVTLSRVMRSITIMGRQMGEAIDF 163 (375)
T ss_dssp GGCHHHHHHHHHHTHHHHHHHHHHHTTCCGGGSEEEETHHHHTBHHHHHHHHHHHTTSBHHHHHHTGGGGTCCCCTTCBT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEEcchhhhhhHHHHHHHHHhceeEHHHHhccchhhhhccCCCCCh
Confidence 5899999999 7787 8899999999999999999998 346899999999999999999765 33 246899
Q ss_pred ccchhhhhhhcCCCcCchhhhhccCCCCCceeeecCCchHHHHHHHHHhhhhCC--------C-CceeeecccccCCCCC
Q psy13709 211 GKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGY--------V-KPALIHSTFFPALQGA 281 (405)
Q Consensus 211 g~~~YpllQaaD~~~~~f~~l~~~~~~~~~lvp~G~DQd~~~~l~rdla~r~~~--------~-kp~~l~~~~lp~L~G~ 281 (405)
|+|+||+|||||+++ ++ .+++|||.||+||+++|||+|+|+|+ . +|.++++++||+|+|+
T Consensus 164 g~f~YP~LQaaDil~------~~-----~~~vp~G~DQ~~~i~l~rdla~r~n~~~~~~~g~~~~~~~~~~~~l~gL~g~ 232 (375)
T 2cyc_A 164 AKLIYPMMQVADIFY------QG-----VTIAHAGMDQRKAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEP 232 (375)
T ss_dssp HHHHHHHHHHHHHHH------TT-----CSEEEEEGGGHHHHHHHHHHGGGCSSSCEEETTEEECCEEEEECCCBCSSCC
T ss_pred HHHHHHHHHHHHHHH------hC-----CCeecccchHHHHHHHHHHHHHHhCCcccccccccCccEEeccccccCCCCc
Confidence 999999999999863 32 68999999999999999999999998 4 7899999999999996
Q ss_pred ----------------CccCCCCCCCCceeccCCHHHHHHHhhcccccCCccchhhhhhcCCCCchHHHHHHHHhccC-C
Q psy13709 282 ----------------NTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLE-D 344 (405)
Q Consensus 282 ----------------~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~~~~t~e~~~~~ggn~~v~~~~~~l~~f~~-~ 344 (405)
++|||||.|+++|||+|+|++|++||++ ||||+ ++++.|++++|+++|+. +
T Consensus 233 ~~~~~~~~~~~~~~~~~~KMSKS~~~~~I~L~d~p~~i~~KI~~-A~t~~-----------~~~~~~~v~~~~~~~~f~~ 300 (375)
T 2cyc_A 233 PKWPIESEEEFKEIKAQMKMSKSKPYSAVFIHDSPEEIRQKLRK-AFCPA-----------REVRYNPVLDWVEYIIFRE 300 (375)
T ss_dssp SSSSCCSHHHHHHHHHHHBGGGSCGGGSCBTTCCHHHHHHHHHH-SCCCT-----------TCCSSCHHHHHHHHTTTSS
T ss_pred ccccccchhhhhhhhhhhcccCCCCCCeeccCCCHHHHHHHHHH-hcCCC-----------CCCCCChHHHHHHHHhcCC
Confidence 4899999988899999999999999999 99986 35566788999999862 2
Q ss_pred ------------------hhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHH---HhHHHHHhhh
Q psy13709 345 ------------------DDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQHQEAMK---GVTEEVLAQY 395 (405)
Q Consensus 345 ------------------d~e~eei~~~~~~G~l~~~elK~~La~~i~~~l~~~qe~r~---~~~~~~~~~~ 395 (405)
.+++++|+++|.+|+++|++||++||++|+++++|+|++|+ +.. +.++.+
T Consensus 301 ~~~~~~i~~~~~~gg~~~~~~~~el~~~~~~g~~~~~~~K~~La~~l~~~l~pir~~~~~~~~~~-~~~~~~ 371 (375)
T 2cyc_A 301 EPTEFTVHRPAKFGGDVTYTTFEELKRDFAEGKLHPLDLKNAVAEYLINLLEPIRRYFEKHPEPL-ELMRSV 371 (375)
T ss_dssp SSCCEEECCCGGGTCCEEESSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTHHHHHHHHHCCHHH-HHHHHC
T ss_pred CCcceeeecchhccCcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhChhHH-HHHHhc
Confidence 46799999999999999999999999999999999999999 443 345544
No 14
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=100.00 E-value=6.3e-64 Score=504.84 Aligned_cols=293 Identities=23% Similarity=0.273 Sum_probs=227.8
Q ss_pred cccccCCHHHHHHHHhcC-CCce----eeeecCCCCCCcchhhhHHHHH-HHHHHhcCCccEEEEecCccchhccCCCHH
Q psy13709 73 IFFSHRDMHSILNLYEQG-KPFF----LYTGRGPSSDSMHLGHLIPFMF-TKWLQDVFDVPLVIQLTDDEKSLWKNIKPE 146 (405)
Q Consensus 73 l~~~~~d~~~ll~~~~~~-~~~~----iytG~~PT~~slHlGhli~~~~-~~~lQ~~~~~~v~I~i~D~e~~l~~~lt~e 146 (405)
+-.+|||++.+++.+++| +|++ +|+|++||| .||||||+|++. .++||+ ++.++++|+|+|+++. ..+++
T Consensus 11 ~~~~hrdld~il~~~e~g~~p~~m~~ri~sG~~PTG-~lHLGhyvGal~~~~~LQ~--~~~~~~~IaD~hAlt~-~~~~~ 86 (388)
T 3prh_A 11 IPNPLLGLDSTENLYFQGIDPFTMKQTIFSGIQPSG-SVTLGNYIGAMKQFVELQH--DYNSYFCIVDQHAITV-PQDRL 86 (388)
T ss_dssp ------------------------CCEEEEEECCCS-CCBHHHHHHTHHHHHHTTT--TSEEEEEECHHHHTTS-CCCHH
T ss_pred CCCccCCHHHHHHHHHcCCCCcccCCeEEEeeCCCC-cchHHHHHHHHHHHHHHHc--cCcEEEEEecceeeec-CCCHH
Confidence 456899999999999999 9998 999999996 699999999875 567998 4567888999999886 67899
Q ss_pred HHHHHHHHHHHHHHHcCCCCCceEEeeCccccChHHHHHHHHHHhhhCHHHHHHHhCC------CCCCccccchhhhhhh
Q psy13709 147 EAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPSFYLNILKIQKLVNGTTVKAIFGL------KDFDSVGKFSFPAIQA 220 (405)
Q Consensus 147 ~i~~~~~~~~~~~~A~G~dp~kt~i~~ns~~~~~~~~~~v~~l~~~~t~~~~~~~~g~------~~~~s~g~~~YpllQa 220 (405)
++++++++++++|+|||+||++++||.||+|. ......+.++..+++.++.+..++ .+++++|+|+||+|||
T Consensus 87 ~lr~~~~~~aa~~lA~GlDp~kt~if~qS~v~--~~~el~w~l~~~~~~~~L~R~~~fk~k~~~~~~~~~g~~~YPvLQA 164 (388)
T 3prh_A 87 ELRKNIRNLAALYLAVGLDPEKATLFIQSEVP--AHAQAGWMMQCVAYIGELERMTQFKDKSKGNEAVVSGLLTYPPLMA 164 (388)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTEEEEEGGGST--HHHHHHHHHHTTSCHHHHHTTC----------CCBHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCChhHeEEEeccccc--chHHHHHHHHhhccHHHHHhhhhHhHHhhccCCCcchhHhhHHHHH
Confidence 99999999999999999999999999999996 223333444555555544432222 2689999999999999
Q ss_pred cCCCcCchhhhhccCCCCCceeeecCCchHHHHHHHHHhhhhCC------CCceeee---cccccCCCCCCccCCCCCC-
Q psy13709 221 APSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGY------VKPALIH---STFFPALQGANTKMSASDL- 290 (405)
Q Consensus 221 aD~~~~~f~~l~~~~~~~~~lvp~G~DQd~~~~l~rdla~r~~~------~kp~~l~---~~~lp~L~G~~~KMSkS~~- 290 (405)
|||+. ++ +|+||||.||+||+++|||+|+|||. ..|..+. +.++|||+|+++|||||.|
T Consensus 165 ADIl~------~~-----ad~vPvG~DQ~~hleltRdia~rfn~~y~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~ 233 (388)
T 3prh_A 165 ADILL------YG-----TDLVPPGEDQKQHLELTRNLAERFNKKYNDIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPN 233 (388)
T ss_dssp HHHHT------TT-----CCEECCCSSCHHHHHHHHHHHHHHHHHTCSCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSS
T ss_pred HHHHH------hC-----CCEEEechhHHHHHHHHHHHHHHhCcccCCCcccchhhhcccccccccCCCCCCccCCCCCC
Confidence 99873 33 79999999999999999999999983 2243332 4688999887789999997
Q ss_pred -CCceeccCCHHHHHHHhhcccccCCccchhhhhhcCCCCchHHHHHHHHhccCChhhHHHHHHHHhcCCCCHHHHHHHH
Q psy13709 291 -NSAIFLTDTPKQVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKIL 369 (405)
Q Consensus 291 -nsaI~L~D~p~~i~~KI~k~A~t~~~~t~e~~~~~ggn~~v~~~~~~l~~f~~~d~e~eei~~~~~~G~l~~~elK~~L 369 (405)
+|+|||+|+|++|++|||+ ||||+..+++++ .+++|++|++++|+++| +++++++|+++|+ |. +|++||+.|
T Consensus 234 ~~n~I~L~D~p~~I~kKI~k-a~TD~~~~~~~~--~~~~p~v~~l~~i~~~~--~~~~~eel~~~y~-g~-~~g~lK~~l 306 (388)
T 3prh_A 234 QKAYITLLDEPKQLEKKIKS-AVTDSEGIVKFD--KENKPGVSNLLTIYSIL--GNTTIEELEAKYE-GK-GYGEFKGDL 306 (388)
T ss_dssp TTSCCBTTCCHHHHHHHHHT-CCCCSSCCCCCC--TTTCHHHHHHHHHHHHH--HTCCHHHHHHHTT-TC-CHHHHHHHH
T ss_pred CCCeeecCCCHHHHHHHHhh-ccCCCCCcccCC--CCCCCCcchHHHHHHhc--CCCcHHHHHHHHc-CC-CHHHHHHHH
Confidence 6899999999999999999 999988766655 58999999999999998 5678999999999 76 999999999
Q ss_pred HHHHHHhhHHHHHHHHHhHH
Q psy13709 370 IDTITPIVTQHQEAMKGVTE 389 (405)
Q Consensus 370 a~~i~~~l~~~qe~r~~~~~ 389 (405)
|++|+++++|+|++|+++++
T Consensus 307 ae~l~~~l~pirer~~~~~~ 326 (388)
T 3prh_A 307 AEVVVNALKPIQDRYYELIE 326 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999998764
No 15
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=100.00 E-value=1.6e-63 Score=493.46 Aligned_cols=289 Identities=17% Similarity=0.237 Sum_probs=258.0
Q ss_pred HHHHHHcCcccccCCHHHHHHHHhcCCCceeeeecCCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCccchhccC--
Q psy13709 65 VHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKN-- 142 (405)
Q Consensus 65 ~~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~~-- 142 (405)
.++|++||++++|+|+++|++.++ ++++++|+||+|||.|||||||++++.++|||++|+ .++++|||+|+.+.+.
T Consensus 7 ~~~l~~Rg~~~~~~~~~~l~~~l~-~~~~~vy~G~~PTg~slHlGh~l~l~~~~~lQ~~g~-~~~~~i~D~~a~~~dp~g 84 (322)
T 2yxn_A 7 IKQLQERGLVAQVTDEEALAERLA-QGPIALVCGFDPTADSLHLGHLVPLLCLKRFQQAGH-KPVALVGGATGLIGDPSF 84 (322)
T ss_dssp HHHHHHTTCCSEESSHHHHHHHHH-HSCCEEEEEECCSSSSCBHHHHHHHHHHHHHHHTTC-EEEEEECTTGGGTCCCTT
T ss_pred HHHHHHCCceeeeCCHHHHHHHHc-CCCCEEEEeecCCCCcccHHHHHHHHHHHHHHHcCC-cEEEEEccceeeecCCCC
Confidence 689999999999999999999998 778999999999997799999999999999999865 4566689999988643
Q ss_pred -------CCHHHHHHHH---HHHHHHHHHcCCCCCceEEeeCccccC----hHHHHHHH---HHHhhhCHHHHHHHhCC-
Q psy13709 143 -------IKPEEAKKLA---YENAKAIIACGFKQDSTFIFSDIDFMN----PSFYLNIL---KIQKLVNGTTVKAIFGL- 204 (405)
Q Consensus 143 -------lt~e~i~~~~---~~~~~~~~A~G~dp~kt~i~~ns~~~~----~~~~~~v~---~l~~~~t~~~~~~~~g~- 204 (405)
++.+++++|+ ++++++++|||+||+++.||+|++|+. .+++++++ .++++.+.+++++++++
T Consensus 85 ~~~~R~~l~~e~i~~n~~~~~~~~~~~la~g~dp~k~~i~~qs~w~~~~~~l~~l~~~~~~~~v~~m~~~~~~k~r~~~~ 164 (322)
T 2yxn_A 85 KAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRE 164 (322)
T ss_dssp CSSCCCCCCHHHHHHHHHHHHHHHGGGSCSSSGGGCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHTTCHHHHHHHHCT
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHcCCCccceEEEecchhhccCcHHHHHHHHhccccHHHHhhhHHHHHHhccC
Confidence 3899999999 788999999999999999999999972 35777776 79999999999999975
Q ss_pred CCCCccccchhhhhhhcCCCcCchhhhhccCCCCCceeee-cCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCc
Q psy13709 205 KDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPC-AIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANT 283 (405)
Q Consensus 205 ~~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~lvp~-G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~ 283 (405)
.+++|+|+|+||+|||||++ ++++ +++|.||+ |+||+||+++|||+|+|+|..+++.++.|+||+|+| +
T Consensus 165 ~~~is~g~f~YP~LQaaDil-----~l~~---~~~~~v~~gG~DQ~~~i~l~rdla~r~n~~~~~~l~~pll~gldG--~ 234 (322)
T 2yxn_A 165 DQGISFTEFSYNLLQGYDFA-----CLNK---QYGVVLCIGGSDQWGNITSGIDLTRRLHQNQVFGLTVPLITKADG--T 234 (322)
T ss_dssp TCCCCHHHHTHHHHHHHHHH-----HHHH---HHCEEEEEECTTCHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTS--C
T ss_pred CCCccchhhhHHHHHHHHHH-----HHhc---cCCceEEecCchhHHHHHHHHHHHHHhCCCCceeeccCccCCCCc--c
Confidence 46799999999999999955 4443 23577775 999999999999999999998999999999999998 7
Q ss_pred cCCCCCCCCceeccC---CHHHHHHHhhcccccCCccchhhhhhcCCCCchHHHHHHHHhccC-ChhhHHHHHHHHhcCC
Q psy13709 284 KMSASDLNSAIFLTD---TPKQVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLE-DDDKLEQIRKNYTSGA 359 (405)
Q Consensus 284 KMSkS~~nsaI~L~D---~p~~i~~KI~k~A~t~~~~t~e~~~~~ggn~~v~~~~~~l~~f~~-~d~e~eei~~~~~~G~ 359 (405)
|||||.+| +|||+| +|+++++||++ + + .+.+++|+++|+. +++++++|+++|++|.
T Consensus 235 KMSKS~~n-~I~L~d~~tsp~~~~~ki~~-~-~-----------------d~~v~~~l~~~~~~~~~~i~~l~~~~~~g~ 294 (322)
T 2yxn_A 235 KFGKTEGG-AVWLDPKKTSPYKFYQFWIN-T-A-----------------DADVYRFLKFFTFMSIEEINALEEEDKNSG 294 (322)
T ss_dssp BTTEETTE-ECBSSTTTSCHHHHHHHHHT-C-C-----------------HHHHHHHHHHHCCCCHHHHHHHHHHHHHHS
T ss_pred cccCCCCC-eeeccCCCCCHHHHHHHHhC-C-C-----------------cccHHHHHHHHHcCCHHHHHHHHHHHHcCC
Confidence 99999998 999999 99999999999 4 1 3678999999975 8899999999999986
Q ss_pred CCHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy13709 360 LLTGELKKILIDTITPIVTQHQEAMKG 386 (405)
Q Consensus 360 l~~~elK~~La~~i~~~l~~~qe~r~~ 386 (405)
+++++|+.||++|++++++++++++.
T Consensus 295 -~~~~~K~~La~~i~~~l~~~~~~~~a 320 (322)
T 2yxn_A 295 -KAPRAQYVLAEQVTRLVHGEEGLQAA 320 (322)
T ss_dssp -SCCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 99999999999999999999999874
No 16
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=100.00 E-value=1.2e-62 Score=486.80 Aligned_cols=272 Identities=18% Similarity=0.233 Sum_probs=239.7
Q ss_pred CceeeeecCCCCCCcchhhhHH-HHHHHHHHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q psy13709 92 PFFLYTGRGPSSDSMHLGHLIP-FMFTKWLQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTF 170 (405)
Q Consensus 92 ~~~iytG~~PT~~slHlGhli~-~~~~~~lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~kt~ 170 (405)
..++|+||+||| +||||||++ +...++||+ ++.++++|||+|+++.+ .+++++++++++++++|+|||+||+++.
T Consensus 3 ~~~vysG~~PTg-~lHlG~~lg~l~~~~~lQ~--g~~~~~~iaD~ha~~~~-~~~~~l~~~~~~~~~~~lA~Gldp~k~~ 78 (322)
T 3tzl_A 3 AMRVLTGLQPSG-DLHIGNYFGAIKQMVDAQE--KSQMFMFIANYHAMTSS-QDGEKLKQNSLKAAAAFLSLGIDPQKSV 78 (322)
T ss_dssp -CCBEEEECCSS-CCBHHHHHHTHHHHHHTTT--TSCCEEEECHHHHTTTC-CCHHHHHHHHHHHHHHHHHTTCCTTTSE
T ss_pred ceEEEEccCCCc-cccHHHHHHHHHHHHHHhc--CCCEEEEEecCeeecCC-CCHHHHHHHHHHHHHHHHHcCCCccceE
Confidence 467999999997 899999996 556788999 46678889999998854 5899999999999999999999999999
Q ss_pred EeeCccccChHHHHHHHHHHhhhCHHH------HHHHhCCCCCCccccchhhhhhhcCCCcCchhhhhccCCCCCceeee
Q psy13709 171 IFSDIDFMNPSFYLNILKIQKLVNGTT------VKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPC 244 (405)
Q Consensus 171 i~~ns~~~~~~~~~~v~~l~~~~t~~~------~~~~~g~~~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~lvp~ 244 (405)
||.||+|. .+....+.+++.++++. ++.++++.+++|+|+|+||+|||||+++ ++ .|++||
T Consensus 79 i~~qS~~~--~~~el~~~l~~~~~~~~l~r~~~~K~~~~~~~~~~~g~f~YP~LQAaDil~------~~-----~~~vpv 145 (322)
T 3tzl_A 79 FWLQSDVK--EVMELYWILSQFTPMGLLERAHSYKDKVAKGLSASHGLFSYPVLMAADILL------FD-----TRIVPV 145 (322)
T ss_dssp EEEGGGCT--HHHHHHHHHGGGCBHHHHHSCHHHHHHHHTTCCCBHHHHHHHHHHHHHHHH------TT-----CSEEEC
T ss_pred EEECCcch--hHHHHHHHHhccCcHHHHHhhhHHHHHHccCCCCchHHHHHHHHHHHHHHH------hC-----CcEEEe
Confidence 99999997 34555566777777764 4667777789999999999999999873 32 699999
Q ss_pred cCCchHHHHHHHHHhhhhCC------CCceeee---cccccCCCCCCccCCCCCCCCceeccCCHHHHHHHhhcccccCC
Q psy13709 245 AIDQDPYFRLTRDVAPKLGY------VKPALIH---STFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGG 315 (405)
Q Consensus 245 G~DQd~~~~l~rdla~r~~~------~kp~~l~---~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~~ 315 (405)
|+||+||+++|||+|+|+|. ++|..++ +++||+|+| +|||||.+| +|||+|+|++|++||++ |+||+
T Consensus 146 G~DQ~~hi~l~Rdia~r~n~~~g~~f~~P~~~~~~~~~~l~~l~G--~KMSKS~~n-~I~L~d~p~~i~~KI~~-a~td~ 221 (322)
T 3tzl_A 146 GKDQIQHVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDG--AKMSKSYQN-TIDIFSSEKTLKKQISS-IVTDS 221 (322)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHCSCSCCCEEECCCSSCCCBCTTS--SBCCGGGTC-CCBSSCCHHHHHHHHHT-CCCCC
T ss_pred ccchHHHHHHHHHHHHHhcccccCCCCCchhhhccccccccCCCC--CcCCCCCCC-ceecCCCHHHHHHHHHh-ccCCC
Confidence 99999999999999999975 5665554 799999999 899999998 99999999999999999 99999
Q ss_pred ccchhhhhhcCCCCchHHHHHHHHhccCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhHHH
Q psy13709 316 QATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQHQEAMKGVTEE 390 (405)
Q Consensus 316 ~~t~e~~~~~ggn~~v~~~~~~l~~f~~~d~e~eei~~~~~~G~l~~~elK~~La~~i~~~l~~~qe~r~~~~~~ 390 (405)
..+. .++||++|++++|+++|+ +++++++|+++|++|.+++++||+.||++|+++++|+|+||++++++
T Consensus 222 ~~~~-----~~~~~~~~~v~~~~~~~~-~~~~i~~l~~~~~~g~~~~~~~K~~lae~l~~~l~pir~~~~~~~~~ 290 (322)
T 3tzl_A 222 TALE-----DPKDHENCNIFKIAKLFL-DESGQKELQIRYEKGGEGYGHFKIYLNELVNAYFKEAREKYNELLEK 290 (322)
T ss_dssp CCTT-----SCCCGGGCHHHHHHGGGC-CHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHTHHHHHHHHHHHHS
T ss_pred cccc-----CCCCCcchhHHHHHHHhC-ChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHcC
Confidence 8752 357999999999999996 67899999999999999999999999999999999999999999863
No 17
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=100.00 E-value=1.6e-61 Score=486.89 Aligned_cols=302 Identities=19% Similarity=0.232 Sum_probs=257.7
Q ss_pred HHHHHHcCcccccCCHHHHHHHHhcCCCceeeeecCCCCCCcchhhhHHH-HHHHHHHhcCCccEEEEecCccchhccC-
Q psy13709 65 VHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPF-MFTKWLQDVFDVPLVIQLTDDEKSLWKN- 142 (405)
Q Consensus 65 ~~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~PT~~slHlGhli~~-~~~~~lQ~~~~~~v~I~i~D~e~~l~~~- 142 (405)
.-.+++||+.. +.+.++|.+.+++++++++|+||+||| +|||||.+.. +.+++||++ |+.++++|||+|+++.+.
T Consensus 30 ~~~li~r~~~e-~~~~~~L~~~L~~~~~~~iy~G~~PTg-~lHlG~gvl~~~~~~~lQ~~-G~~~~~lIaD~ha~i~d~~ 106 (373)
T 3vgj_A 30 ILNDILSISSE-CIQPDELRVKLLLKRKLICYDGFEPSG-RMHIAQGLLKSIIVNKLTSN-GCTFIFWIADWFAHLNNKM 106 (373)
T ss_dssp HHHHHHHHCSE-EECHHHHHHHHHHCSSCEEEEEECCCS-SCBHHHHHHHHHHHHHHHTT-TCEEEEEECHHHHHHTTGG
T ss_pred HHHHHHcCcce-ecCHHHHHHHHhcCCCceEEeCCCCCC-CceehhhHHHHHHHHHHHHC-CCcEEEEEecceeEecCCC
Confidence 56789999886 556677888888788999999999997 9999997643 357889997 567888899999998763
Q ss_pred -CCHHHHHHHHHHHHHHHHHcCCCCCceEEeeCcccc---ChHHHHHHHHHHhhhCHHHHHHHh---CCC--CCCccccc
Q psy13709 143 -IKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFM---NPSFYLNILKIQKLVNGTTVKAIF---GLK--DFDSVGKF 213 (405)
Q Consensus 143 -lt~e~i~~~~~~~~~~~~A~G~dp~kt~i~~ns~~~---~~~~~~~v~~l~~~~t~~~~~~~~---g~~--~~~s~g~~ 213 (405)
.+.+++++++.++++.++|||+||+++.||.||+|. ...+|..+.+++++++++++.++. ++. +++|+|+|
T Consensus 107 ~~~~~~i~~~~~~~~~~~~a~G~dp~k~~i~~~S~~~~~~~~l~~~~~~~i~~~~tv~rm~~~~~~~~r~~~~~~~~g~f 186 (373)
T 3vgj_A 107 SGDLKKIKKVGSYFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGRSEGEENYCSQI 186 (373)
T ss_dssp GGCHHHHHHHHHHHHHHHHHTTCCSTTEEEEEHHHHHHHSHHHHHHHHHHHHTTSBHHHHHTTGGGGTCCTTSCCBTHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCChhheEEEeChhHHhhhhHHHHHHHHHHHccCcHHHHHhhhHHHhhhccCCCChHHH
Confidence 588999999999999999999999999999999997 346788888999999999988742 333 57999999
Q ss_pred hhhhhhhcCCCcCchhhhhccCCCCCceeeecCCchHHHHHHHHHhhhhCCC-CceeeecccccCCCCCCccCCCCCCCC
Q psy13709 214 SFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGYV-KPALIHSTFFPALQGANTKMSASDLNS 292 (405)
Q Consensus 214 ~YpllQaaD~~~~~f~~l~~~~~~~~~lvp~G~DQd~~~~l~rdla~r~~~~-kp~~l~~~~lp~L~G~~~KMSkS~~ns 292 (405)
+||+|||||+++ ++ .+++|||.||+||+++|||+|+|+|+. +|+++++++||+|+++.+|||||.|||
T Consensus 187 ~YPlLQaaDil~------l~-----ad~vpgG~DQ~~~l~l~Rdla~r~~~~~~~~~l~~p~l~gL~dG~~KMSKS~~~~ 255 (373)
T 3vgj_A 187 LYPCMQCADIFF------LN-----VDICQLGIDQRKVNMLAREYCDIKKIKKKPVILSHGMLPGLLEGQEKMSKSDENS 255 (373)
T ss_dssp HHHHHHHHHHHH------TT-----CSEECCBGGGHHHHHHHHHHHHHHTCSCCCEEEEBCCCCCSSTTCCSCCSSSTTC
T ss_pred HHHHHHHhcccc------cC-----CcEEEcchhhHHHHHHHHHHHHHhCCCCCceEEeCCeeecCCCCCCCCcCCCCCC
Confidence 999999999873 33 578999999999999999999999986 789999999999943336999999888
Q ss_pred ceeccCCHHHHHHHhhcccccCCccchhhhhhcCCCCchH----HHHHHHHhcc-C---------ChhhHHHHHHHHhcC
Q psy13709 293 AIFLTDTPKQVKNKVNKHAYSGGQATVEEHRELGGNCDVD----IAYQYLTFFL-E---------DDDKLEQIRKNYTSG 358 (405)
Q Consensus 293 aI~L~D~p~~i~~KI~k~A~t~~~~t~e~~~~~ggn~~v~----~~~~~l~~f~-~---------~d~e~eei~~~~~~G 358 (405)
+|||+|+|++|++||++ ||||++. .++||.++ ++|.|+.+|. + +.+++++|+++|++|
T Consensus 256 ~I~L~D~p~~i~~KI~k-A~td~~~-------~~~n~~~~~~~~~~f~~~~~f~~~~~~~~g~~~~~~~~eel~~~~~~g 327 (373)
T 3vgj_A 256 AIFMDDSESDVNRKIKK-AYCPPNV-------IENNPIYAYAKSIIFPSYNEFNLVRKEKNGGDKTYYTLQELEHDYVNG 327 (373)
T ss_dssp CCBTTCCHHHHHHHHHH-SCCCTTC-------CTTCHHHHHHHHTHHHHHSSEEECCCGGGTCCEEECCHHHHHHHHHTT
T ss_pred eeecCCCHHHHHHHHHh-CcCCCCC-------CCCCcchhhhhhhhhhhhhhhcccccccccCCcCcccHHHHHHHHHcC
Confidence 99999999999999999 9999753 35777664 3566766662 1 236899999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhHHHHHHHHHhH
Q psy13709 359 ALLTGELKKILIDTITPIVTQHQEAMKGVT 388 (405)
Q Consensus 359 ~l~~~elK~~La~~i~~~l~~~qe~r~~~~ 388 (405)
.++|++||++||++|+++++|+|++|++..
T Consensus 328 ~l~~~dlK~~lae~i~~~l~Pire~~~~~~ 357 (373)
T 3vgj_A 328 FIHPLDLKDNVAMYINKLLQPVRDHFQNNI 357 (373)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 999999999999999999999999998643
No 18
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.2e-60 Score=473.31 Aligned_cols=293 Identities=22% Similarity=0.332 Sum_probs=261.8
Q ss_pred HHHHHHcCcccccCCHHHHHHHHhcCCCceeeeecCCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCccchhccCCC
Q psy13709 65 VHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKNIK 144 (405)
Q Consensus 65 ~~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~~lt 144 (405)
.-.|++||++..+++ ++|.+.+++++++++|+||+||| +|||||+++++..+|||++ |..++++|||+++++.+..+
T Consensus 6 ~~~l~~rg~~e~~~~-~~l~~~l~~~~~~~vy~G~~PTg-~lHlG~l~~l~~~~~lq~~-g~~~~~~i~D~~a~~~d~~~ 82 (323)
T 2cyb_A 6 KLRLITRNAEEVVTE-EELRQLIETKEKPRAYVGYEPSG-EIHLGHMMTVQKLMDLQEA-GFEIIVLLADIHAYLNEKGT 82 (323)
T ss_dssp HHHHHHTTCSEEETH-HHHHHHHHSCSCCEEEEEECCCS-CCBHHHHHHHHHHHHHHHT-TCEEEEEECHHHHHHTTCCC
T ss_pred HHHHHHcCChhhcCH-HHHHHHHhCCCCCEEEECcCCCC-cchHHHHHHHHHHHHHHHC-CCcEEEEECCceeEcCCCCC
Confidence 457899999988874 78888888889999999999996 8999999999989999997 46688889999999987559
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCceEEeeCcccc-ChHHHHHHHHHHhhhCHHHHHHHh---CCC-CCCccccchhhhhh
Q psy13709 145 PEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFM-NPSFYLNILKIQKLVNGTTVKAIF---GLK-DFDSVGKFSFPAIQ 219 (405)
Q Consensus 145 ~e~i~~~~~~~~~~~~A~G~dp~kt~i~~ns~~~-~~~~~~~v~~l~~~~t~~~~~~~~---g~~-~~~s~g~~~YpllQ 219 (405)
++++++|+.+++++++|||+||+++.||.||+|+ ...++..++.+++.+|++++.++. ++. ++.++|+|+||+||
T Consensus 83 ~~~i~~~~~~~~~~~~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~~~~~~~~~g~~~YP~lq 162 (323)
T 2cyb_A 83 FEEIAEVADYNKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSRRKEDPMVSQMIYPLMQ 162 (323)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCTTTCEEEEGGGTTTSHHHHHHHHHHHHHSBHHHHHHHTTTTCSCSSSCBTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCccceEEEEcchhccchHHHHHHHHHhCccCHHHHhccchhhccccCCCCchhhhhHHHH
Confidence 9999999999999999999999999999999998 457888999999999999998865 443 34699999999999
Q ss_pred hcCCCcCchhhhhccCCCCCceeeecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCCCCceeccCC
Q psy13709 220 AAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDT 299 (405)
Q Consensus 220 aaD~~~~~f~~l~~~~~~~~~lvp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~ 299 (405)
|||+++ ++ .++||+|.||++|++++||+++|+|+++|..+++++||+|+| +||||| ++++|||+|+
T Consensus 163 aaD~l~------~~-----~~~v~~G~DQ~~~~~l~rdla~~~~~~~p~~l~~pll~~l~G--~KMSKS-~~n~I~l~d~ 228 (323)
T 2cyb_A 163 ALDIAH------LG-----VDLAVGGIDQRKIHMLARENLPRLGYSSPVCLHTPILVGLDG--QKMSSS-KGNYISVRDP 228 (323)
T ss_dssp HHHHHH------TT-----CSEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCBCTTS--SBCCTT-TTCSCBTTCC
T ss_pred HHHHHh------cC-----CCEEEechhhHHHHHHHHHHHHhcCCCCceEEecCcccCCCC--CcccCC-cCceeCCCCC
Confidence 999763 33 588999999999999999999999999999999999999998 899999 5669999999
Q ss_pred HHHHHHHhhcccccCCccchhhhhhcCCCCchHHHHHHHHhcc----------------C--ChhhHHHHHHHHhcCCCC
Q psy13709 300 PKQVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFL----------------E--DDDKLEQIRKNYTSGALL 361 (405)
Q Consensus 300 p~~i~~KI~k~A~t~~~~t~e~~~~~ggn~~v~~~~~~l~~f~----------------~--~d~e~eei~~~~~~G~l~ 361 (405)
|++|++||++ |+||++ +++.|++++|+++|+ . +.+++++|+++|++|+++
T Consensus 229 p~~i~~Ki~~-a~td~~-----------~~~~~~~~~~~~~~~~p~~~~~~i~~~~~~G~~~~~~~~~~l~~~~~~g~~~ 296 (323)
T 2cyb_A 229 PEEVERKIRK-AYCPAG-----------VVEENPILDIAKYHILPRFGKIVVERDAKFGGDVEYASFEELAEDFKSGQLH 296 (323)
T ss_dssp HHHHHHHHHT-SCCCTT-----------CCTTCHHHHHHHHTHHHHHSCEEECCCGGGTCCEEESSHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHh-cCCCCC-----------CCCcChHHHHHHHHhccccCceeEechhhcCCCCCcccHHHHHHHHhcCCCC
Confidence 9999999999 999864 445688899999985 1 345899999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHH
Q psy13709 362 TGELKKILIDTITPIVTQHQEAMKG 386 (405)
Q Consensus 362 ~~elK~~La~~i~~~l~~~qe~r~~ 386 (405)
|++||+.||+.|+++++|+|++|++
T Consensus 297 ~~~~K~~la~~i~~~l~pir~~~~~ 321 (323)
T 2cyb_A 297 PLDLKIAVAKYLNMLLEDARKRLGV 321 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999864
No 19
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=3.7e-61 Score=479.01 Aligned_cols=282 Identities=19% Similarity=0.264 Sum_probs=230.8
Q ss_pred eeeeecCCCCCCcchhhhHHHH-HHHHHHhcCCccEEEEecCccchhcc-CCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q psy13709 94 FLYTGRGPSSDSMHLGHLIPFM-FTKWLQDVFDVPLVIQLTDDEKSLWK-NIKPEEAKKLAYENAKAIIACGFKQDSTFI 171 (405)
Q Consensus 94 ~iytG~~PT~~slHlGhli~~~-~~~~lQ~~~~~~v~I~i~D~e~~l~~-~lt~e~i~~~~~~~~~~~~A~G~dp~kt~i 171 (405)
++|+||+||| +|||||++|++ ...+||++|+..++++|||+|+.+.+ ..+++++++++.+++++|+|||+||+++.|
T Consensus 3 ~vy~G~~PTg-~lHlGh~~g~l~~~~~lQ~~G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~~i 81 (337)
T 2el7_A 3 RVLSGIQPSG-EIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVTL 81 (337)
T ss_dssp CEEEEECSCS-CCBHHHHHTHHHHHHHHHHHHGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTSEE
T ss_pred EEEEeeCCCC-cccHHHHHHHHHHHHHHHhcCCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhheEE
Confidence 6999999996 79999999875 34458998525568889999998876 378999999999999999999999999999
Q ss_pred eeCccccChHHHHHHHHHHhhhCHH------HHHHHhCCCCCCccccchhhhhhhcCCCcCchhhhhccCCCCCceeeec
Q psy13709 172 FSDIDFMNPSFYLNILKIQKLVNGT------TVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCA 245 (405)
Q Consensus 172 ~~ns~~~~~~~~~~v~~l~~~~t~~------~~~~~~g~~~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~lvp~G 245 (405)
|+||+|. .+....+.+++.++++ +++.+++..+++|+|+|+||+|||||+++ ++ .|++|||
T Consensus 82 ~~qS~~~--~~~el~~~l~~~~~~~~l~r~~~~k~r~~~~~~~~~g~f~YPvLQaaDil~------~~-----~~lvp~G 148 (337)
T 2el7_A 82 FVQSHVP--EHTELSWVFTTLTPLGDLTRMTQFKDKASKQETVWSGLLMYPVLQAADILI------YK-----ADTVPVG 148 (337)
T ss_dssp EEGGGST--HHHHHHHHHHHTSBHHHHHTSHHHHHHTTSSSCCBHHHHHHHHHHHHHHHH------TT-----CCEEECC
T ss_pred EEcCcch--hhHHHHHHHHccCCHHHHHHhHHHHHHhccCCCCChHHHHhHHHHHhhHHh------hC-----CcEEEcc
Confidence 9999997 2333334455555554 34556666778999999999999999762 33 6999999
Q ss_pred CCchHHHHHHHHHhhhhC------CCCceeeec---ccccCCCCCCccCCCCCCCCceeccCCHHHHHHHhhcccccCCc
Q psy13709 246 IDQDPYFRLTRDVAPKLG------YVKPALIHS---TFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQ 316 (405)
Q Consensus 246 ~DQd~~~~l~rdla~r~~------~~kp~~l~~---~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~~~ 316 (405)
+||+||+++|||+|+|+| +++|..+++ ++||+|+| .+|||||.+| +|||+|+|++|++||++ |+||++
T Consensus 149 ~DQ~~~i~l~rdla~r~n~~~g~~f~~P~~~~~~~~p~l~gldG-~~KMSKS~~n-~I~L~d~p~~i~~Ki~~-a~td~~ 225 (337)
T 2el7_A 149 EDQVQHIELTREIARRFNHLFGETFPEPQALLNPEAPRVPGIDG-KAKMSKSLGN-TIGLLEPEESIWQKIQH-LPDDPQ 225 (337)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHSSCCCCCEEECCTTSCCCBCTTS-SSBCCTTTTC-CCBSSSCHHHHHHHHHT-CCCCC-
T ss_pred cchHHHHHHHHHHHHHHHhhcCcccCCCeeecccccccccCCCC-ccccCCCCCC-eeeCcCCHHHHHHHHHh-CCCCCc
Confidence 999999999999999984 578887775 89999999 5899999999 99999999999999999 999998
Q ss_pred cchhhhhhcCCCCchHHHHHHHHhccCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhHHH--HHhh
Q psy13709 317 ATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQHQEAMKGVTEE--VLAQ 394 (405)
Q Consensus 317 ~t~e~~~~~ggn~~v~~~~~~l~~f~~~d~e~eei~~~~~~G~l~~~elK~~La~~i~~~l~~~qe~r~~~~~~--~~~~ 394 (405)
.++++ .|+||++|++++|+++|+ +++++++|+++|.+|.++++++|+.||++|+++++|+|++|++++++ .|++
T Consensus 226 ~~~~~---~~~~p~~~~v~~~~~~~t-~~~~i~~l~~~~~~g~~~~~~~K~~La~~i~~~l~p~re~~~~~~~~~~~l~~ 301 (337)
T 2el7_A 226 RIRLS---DPGDPERTILFTYLSYFA-PKDLVEALKEEYRKAGVGTYVVKRILFDHLMEALRPIRERAEALKKDPDYVMD 301 (337)
T ss_dssp ---------------CHHHHHHHHHS-CHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred ccccc---CCCCCchhhHHHHHHHcC-ChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHcCHHHHHH
Confidence 77654 678999999999999995 33699999999999889999999999999999999999999999864 4555
Q ss_pred hc
Q psy13709 395 YM 396 (405)
Q Consensus 395 ~~ 396 (405)
.+
T Consensus 302 il 303 (337)
T 2el7_A 302 AL 303 (337)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 20
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=100.00 E-value=4.1e-61 Score=479.03 Aligned_cols=283 Identities=19% Similarity=0.265 Sum_probs=239.4
Q ss_pred CCceeeeecCCCCCCcchhhhHHHH-HHHHHHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q psy13709 91 KPFFLYTGRGPSSDSMHLGHLIPFM-FTKWLQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDST 169 (405)
Q Consensus 91 ~~~~iytG~~PT~~slHlGhli~~~-~~~~lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~kt 169 (405)
...++|+|++||| +||||||+|++ ..++||++| ..++++|||+++++.+..+++++++++++++++|+|||+||+++
T Consensus 11 ~~~~v~~G~~PTG-~lHLGn~~g~l~~~~~lQ~~G-~~~~~~IaD~ha~t~~~~dp~~~~~~~~~~~~~~lA~Gldp~k~ 88 (340)
T 2g36_A 11 HHMRILSGMRPTG-KLHIGHLVGALENWVKLQEEG-NECFYFVADWHALTTHYDDVSKLKEYTRDLVRGFLACGIDPEKS 88 (340)
T ss_dssp -CCEEEEEECCCS-SCBHHHHHTHHHHHHHHHHTT-CEEEEEECHHHHHHHHTTCCTTHHHHHHHHHHHHHHTTCCTTTS
T ss_pred CCCeEEEeeCCCC-cccHHhHHHHHHHHHHHHHCC-CCEEEEEecceeecCCCCCHHHHHHHHHHHHHHHHHhCCChhHe
Confidence 3568999999997 99999999876 556699984 56777799999998766677889999999999999999999999
Q ss_pred EEeeCccccChHHHHHHHHHHhhhCHHH------HHH---HhCCCCCCccccchhhhhhhcCCCcCchhhhhccCCCCCc
Q psy13709 170 FIFSDIDFMNPSFYLNILKIQKLVNGTT------VKA---IFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPC 240 (405)
Q Consensus 170 ~i~~ns~~~~~~~~~~v~~l~~~~t~~~------~~~---~~g~~~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~ 240 (405)
.||.||+|. .+...++.+++.+++++ ++. +++..+++|+|+|+||+|||||++. ++ .|
T Consensus 89 ~if~qS~~~--~~~el~~~l~~~~~v~~l~r~~~~k~~~~r~~~~~~~~~g~f~YPvLQAaDil~------~~-----~~ 155 (340)
T 2g36_A 89 VIFVQSGVK--EHAELALLFSMIVSVSRLERVPTYKEIKSELNYKDLSTAGFLIYPVLQAADILI------YK-----AE 155 (340)
T ss_dssp EEEEGGGCT--HHHHHHHHHHTTSCHHHHHTCHHHHTC-------CCCSHHHHTHHHHHHHHHHT------TT-----CS
T ss_pred EEEECCchH--HHHHHHHHHHccCCHHHHHHhHHHHhHHHHhccCCCCChHHhhhHHHHHhhHHH------hC-----CC
Confidence 999999996 34444555566666554 344 5555678999999999999999763 33 69
Q ss_pred eeeecCCchHHHHHHHHHhhhhC------CCCceee--ecccccCCCCCCccCCCCCCCCceeccCCHHHHHHHhhcccc
Q psy13709 241 LIPCAIDQDPYFRLTRDVAPKLG------YVKPALI--HSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAY 312 (405)
Q Consensus 241 lvp~G~DQd~~~~l~rdla~r~~------~~kp~~l--~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~ 312 (405)
+||||.||+||+++|||+|+|+| +++|..+ ++++||+|+| +|||||.+| +|||+|+|++|++||++ |+
T Consensus 156 ~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~gldG--~KMSKS~~n-~I~L~dsp~~i~~Ki~~-a~ 231 (340)
T 2g36_A 156 GVPVGEDQVYHIELTREIARRFNYLYDEVFPEPEAILSRVPKLPGTDG--RKMSKSYGN-IINLEISEKELEQTILR-MM 231 (340)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHHHSCCCCCCCEEEECCSCCCCCTTS--SCCCGGGTC-CCBTTCCHHHHHHHHHT-CC
T ss_pred EEEcccchHHHHHHHHHHHHHhhhhcccccCCchhhhccccccCCCCc--cccCCCCCC-eEeeeCCHHHHHHHHHh-CC
Confidence 99999999999999999999986 3567644 4799999998 699999997 89999999999999999 99
Q ss_pred cCCccchhhhhhcCCCCchHHHHHHHHhccCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhHHH--
Q psy13709 313 SGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQHQEAMKGVTEE-- 390 (405)
Q Consensus 313 t~~~~t~e~~~~~ggn~~v~~~~~~l~~f~~~d~e~eei~~~~~~G~l~~~elK~~La~~i~~~l~~~qe~r~~~~~~-- 390 (405)
||++. +++..|++|++|++++|+++|+++++++++|+++|.+|.+++++||+.||++|+++++|+|+||++++++
T Consensus 232 td~~~---~~~~~~~~p~~~~v~~~~~~f~~~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~ 308 (340)
T 2g36_A 232 TDPAR---VRRSDPGNPENCPVWKYHQAFDISEEESKWVWEGCTTASIGCVDCKKLLLKNMKRKLAPIWENFRKIDEDPH 308 (340)
T ss_dssp CCTTC---SSTTSCCCGGGCHHHHHHHHTTCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CCccc---ccccCCCCCchhHHHHHHHHHCCCHhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence 99865 4667889999999999999998777888999999999999999999999999999999999999999873
Q ss_pred HHhhh
Q psy13709 391 VLAQY 395 (405)
Q Consensus 391 ~~~~~ 395 (405)
.|++.
T Consensus 309 ~~~~i 313 (340)
T 2g36_A 309 YVDDV 313 (340)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 34443
No 21
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=100.00 E-value=5.6e-61 Score=479.95 Aligned_cols=280 Identities=23% Similarity=0.313 Sum_probs=241.4
Q ss_pred CCCceeeeecCCCCCCcchhhhHHHHHHHH--HHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHHHcCCCCC
Q psy13709 90 GKPFFLYTGRGPSSDSMHLGHLIPFMFTKW--LQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQD 167 (405)
Q Consensus 90 ~~~~~iytG~~PT~~slHlGhli~~~~~~~--lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~ 167 (405)
++++++|+||+||| .||||||+|++ .+| ||+++ .++++|||+|+.+.+..+++++++|+++++++++|||+||+
T Consensus 20 ~~~~~vysG~~PTG-~lHLGn~~g~l-~~~~~lQ~~~--~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~ 95 (351)
T 1yi8_B 20 PARPRVLTGDRPTG-ALHLGHLAGSL-QNRVRLQDEA--ELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQ 95 (351)
T ss_dssp -CCSEEEEEECCSS-CCBHHHHHHTH-HHHHHHTSSS--EEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred CCCcEEEEeeCCCC-CccHHHHHHHH-HHHHHHHHhC--CeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChh
Confidence 55789999999996 69999999986 677 99973 45777999999987778999999999999999999999999
Q ss_pred ceEEeeCccccC-hHHHHH------HHHHHhhhCHHHHHHHhCCCCCCccccchhhhhhhcCCCcCchhhhhccCCCCCc
Q psy13709 168 STFIFSDIDFMN-PSFYLN------ILKIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPC 240 (405)
Q Consensus 168 kt~i~~ns~~~~-~~~~~~------v~~l~~~~t~~~~~~~~g~~~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~ 240 (405)
++.||.||+|.. .++... +.++.++.++++..++.|+.+++|+|+|+||+|||||++. ++ .|
T Consensus 96 k~~i~~qS~~~~~~el~~~l~~~~~v~~l~r~~~~k~~~~~~~f~~~~~~g~f~YPvLQAaDil~------~~-----~~ 164 (351)
T 1yi8_B 96 KTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAADIAA------FG-----AT 164 (351)
T ss_dssp TEEEEEGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHHTCTTCCBHHHHHHHHHHHHHHHH------HT-----CS
T ss_pred hcEEEEcCchhhHHHHHHHHhccCCHHHHHhhhHHHHHHhhcCCCCCCchHhhhhHHHHHhhHHh------cC-----CC
Confidence 999999999972 112111 2345555555555555677789999999999999999762 43 69
Q ss_pred eeeecCCchHHHHHHHHHhhhhC------CCCceee--ecccccCCCCCCccCCCCCCCCceeccCCHHHHHHHhhcccc
Q psy13709 241 LIPCAIDQDPYFRLTRDVAPKLG------YVKPALI--HSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAY 312 (405)
Q Consensus 241 lvp~G~DQd~~~~l~rdla~r~~------~~kp~~l--~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~ 312 (405)
+||||+||+||+++|||+|+|+| +++|..+ ++++||+|+| ++|||||.+| +|||+|+|++|++||++ |+
T Consensus 165 ~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~~ldG-~~KMSKS~~n-~I~L~d~p~~i~~Ki~~-a~ 241 (351)
T 1yi8_B 165 LVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDG-QAKMSKSLGN-AIALGDSADEVARKVMG-MY 241 (351)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHHHTCSCSCCCEEEECSSCSCCCTTS-SSCCCTTTTC-CCBTTCCHHHHHHHHHT-CC
T ss_pred EEEecCCcHHHHHHHHHHHHHHHhhcccccCCCeeeeecCccccCCCC-ccccCCCCCC-eecCCCCHHHHHHHHHh-cC
Confidence 99999999999999999999986 4677654 3799999998 2599999998 99999999999999999 99
Q ss_pred cCCccchhhhhhcCCCCchHHHHHHHHhccCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhHHH
Q psy13709 313 SGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQHQEAMKGVTEE 390 (405)
Q Consensus 313 t~~~~t~e~~~~~ggn~~v~~~~~~l~~f~~~d~e~eei~~~~~~G~l~~~elK~~La~~i~~~l~~~qe~r~~~~~~ 390 (405)
||++ ++++..|+|++.|+++.|+++|+++.+++++|+++|.+|.++|++||+.||++|+++++|+|++|++++++
T Consensus 242 td~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~~~~~~ 316 (351)
T 1yi8_B 242 TDPG---HLRASDPGRVEGNPVFTFLDAFDPDPARVQALKDQYRAGGLGDVKVKKHLIDVLNGVLAPIRTRRAEYERD 316 (351)
T ss_dssp CCTT---CCSTTSCCCCTTCTTHHHHHHHCSCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCcc---cccccCCCCCccchHHHHHHHHcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHhcC
Confidence 9985 45677899999999999999998788889999999999999999999999999999999999999999863
No 22
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=100.00 E-value=2e-61 Score=480.51 Aligned_cols=276 Identities=18% Similarity=0.272 Sum_probs=239.6
Q ss_pred ceeeeecCCCCCCcchhhhHHHH-HHHHHHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q psy13709 93 FFLYTGRGPSSDSMHLGHLIPFM-FTKWLQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFI 171 (405)
Q Consensus 93 ~~iytG~~PT~~slHlGhli~~~-~~~~lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~kt~i 171 (405)
.++|+|++||| .||||||+|++ ..++||+. +.++++|+|+|+++. ..+++++++++++++++|+|||+||+|++|
T Consensus 7 ~~v~sG~~PTG-~lHLGhy~g~l~~~~~lQ~~--~~~~~~iaD~ha~~~-~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i 82 (341)
T 3sz3_A 7 PIVLSGVQPSG-ELSIGNYLGALRQWQQMQDD--YDCQYCVVDLHAITV-RQDPQALHEATLDALAICLAVGVDPKKSTL 82 (341)
T ss_dssp CEEEEEECSSS-CCBHHHHHHTGGGHHHHHHH--SEEEEEECHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCCTTTSEE
T ss_pred CEEEeCcCCCC-cccHHHHHHHHHHHHHHHhc--CeEEEEEecceeEcC-CCCHHHHHHHHHHHHHHHHHcCCChhhcEE
Confidence 47999999996 79999999986 23349996 457888999999886 578999999999999999999999999999
Q ss_pred eeCccccC--hHHHHH-----HHHHHhhhCHHHHHHHhCCCCCCccccchhhhhhhcCCCcCchhhhhccCCCCCceeee
Q psy13709 172 FSDIDFMN--PSFYLN-----ILKIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPC 244 (405)
Q Consensus 172 ~~ns~~~~--~~~~~~-----v~~l~~~~t~~~~~~~~g~~~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~lvp~ 244 (405)
|.||+|.. ..+|.. +..++|+.++++...+++ +++++|+|+||+||||||++ +. +|+|||
T Consensus 83 ~~qS~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~--~~~~~g~~~YP~lQaaDil~------~~-----ad~vpv 149 (341)
T 3sz3_A 83 FVQSHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSARYA--NDVNAGLFGYPVLMAADILL------YG-----AHQVPV 149 (341)
T ss_dssp EEGGGCTHHHHHHHHHHTTSCHHHHHTCHHHHHHHHHHG--GGCCHHHHHHHHHHHHHHHT------TT-----CSEECC
T ss_pred EeccchhhhHHHHHHHHhhccHHHHHHHHHHHHHHhhcc--CCCChhhHHhHHHHHHHHHH------cC-----CCEEEe
Confidence 99999971 122221 357888888888887773 57999999999999999873 32 799999
Q ss_pred cCCchHHHHHHHHHhhhhC--C-------CCceee-e--cccccCCCCCCccCCCCCC--CCceeccCCHHHHHHHhhcc
Q psy13709 245 AIDQDPYFRLTRDVAPKLG--Y-------VKPALI-H--STFFPALQGANTKMSASDL--NSAIFLTDTPKQVKNKVNKH 310 (405)
Q Consensus 245 G~DQd~~~~l~rdla~r~~--~-------~kp~~l-~--~~~lp~L~G~~~KMSkS~~--nsaI~L~D~p~~i~~KI~k~ 310 (405)
|.||+||+++|||+|+|+| + +.|..+ + +++||||+++++|||||.| +|+|||+|+|++|++||++
T Consensus 150 G~DQ~~hlel~Rdia~rfn~~yg~~~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~~- 228 (341)
T 3sz3_A 150 GSDQKQHLELARDIATRFNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDPKSIIKKINK- 228 (341)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHCSSSCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTCCHHHHHHHHHT-
T ss_pred ccchHHHHHHHHHHHHHhchhccCCCcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCCCHHHHHHHhhh-
Confidence 9999999999999999997 2 245433 3 5799999765579999998 6899999999999999999
Q ss_pred cccCCccchhhhhhcCCCCchHHHHHHHHhccCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhHH
Q psy13709 311 AYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQHQEAMKGVTE 389 (405)
Q Consensus 311 A~t~~~~t~e~~~~~ggn~~v~~~~~~l~~f~~~d~e~eei~~~~~~G~l~~~elK~~La~~i~~~l~~~qe~r~~~~~ 389 (405)
||||++.+.++++..+++|++|++|+|+++| +++++++|+++|+ |.++|++||+.|++.|+++++|+|+||+++++
T Consensus 229 a~Td~~~~~~~~~~~~~~p~v~~l~~~~~~~--~~~~~e~i~~~~~-g~~~~g~~K~~lae~i~~~l~pirer~~~~~~ 304 (341)
T 3sz3_A 229 AQTDAETPPRIAYDVENKAGIANLMGLYSAA--TGKTFAEIEAQYA-GVEMYGPFKKDVGEAVVAMLEPVQAEYQRIRN 304 (341)
T ss_dssp CCCCCCSSCCCCCCTTTCHHHHHHHHHHHHH--HCCCHHHHHHHTT-TCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCcccccCCCCCcchhHHHHHHHHc--CCccHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999998878888889999999999999999 5678999999999 66899999999999999999999999999875
No 23
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=100.00 E-value=7.5e-61 Score=478.52 Aligned_cols=284 Identities=19% Similarity=0.281 Sum_probs=238.0
Q ss_pred CCceeeeecCCCCCCcchhhhHHHHHHHH--HHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHHHcCCCCCc
Q psy13709 91 KPFFLYTGRGPSSDSMHLGHLIPFMFTKW--LQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDS 168 (405)
Q Consensus 91 ~~~~iytG~~PT~~slHlGhli~~~~~~~--lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~k 168 (405)
.++++|+||+||| +||||||++++ .+| ||+. ..++++|+|+|+++.+ .+++++++++++++++++|||+||++
T Consensus 3 ~~~~i~sG~~PTG-~lHLGn~vg~l-~~~~~lQ~~--~~~~~~IaD~ha~~~~-~d~~~i~~~~~~~~~~~lA~Gldp~k 77 (348)
T 2yy5_A 3 MMKRALTGIQASG-KQHLGNYLGVM-QSLIELQEQ--CQLFVFVADLHSITVD-FQPQALKQNNFDLVRTLLAVGLDPQK 77 (348)
T ss_dssp -CCEEEEEECCCT-TCBHHHHHHTG-GGHHHHHHH--SEEEEEECHHHHTTSC-CCHHHHHHHHHHHHHHHHHTTCCTTT
T ss_pred CCeEEEEeeCCCC-cccHHHHHHHH-HHHHHHHhC--CcEEEEEcChhhccCC-CCHHHHHHHHHHHHHHHHHhCCChhH
Confidence 3568999999996 99999999876 566 9983 5578889999998865 78999999999999999999999999
Q ss_pred eEEeeCccccC---hHHHH----HHHHHHhhhCHHHHHHHhCC----CCCCccccchhhhhhhcCCCcCchhhhhccCCC
Q psy13709 169 TFIFSDIDFMN---PSFYL----NILKIQKLVNGTTVKAIFGL----KDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHK 237 (405)
Q Consensus 169 t~i~~ns~~~~---~~~~~----~v~~l~~~~t~~~~~~~~g~----~~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~ 237 (405)
+.||.||+|.. ..++. .+.++.|+.++++..++.+| .+++++|+|+||+|||||++. ++
T Consensus 78 ~~if~qS~~~~~~el~w~l~~~~~~~~l~R~~~~k~~~~~~~~~~~~~~~~~~g~~~YPvLQaaDil~------~~---- 147 (348)
T 2yy5_A 78 ACLFLQSDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNPNGTLNIPTGLLTYPALMAGDILL------YQ---- 147 (348)
T ss_dssp EEEEEGGGCHHHHHHHHHHHHHSBHHHHHHCHHHHTTC-----------CCBTHHHHHHHHHHHHHHT------TC----
T ss_pred eEEEECCcccchhHHHHHHHhhccHHHHhchHHHHHHHHhhccccccCCCCChhhhhhHHHHHHHHHH------hC----
Confidence 99999999961 11111 12355555555433333322 568999999999999999863 33
Q ss_pred CCceeeecCCchHHHHHHHHHhhhhC------CCCceeee---cccccCCCCCCccCCCCCCCC--ceeccCCHHHHHHH
Q psy13709 238 VPCLIPCAIDQDPYFRLTRDVAPKLG------YVKPALIH---STFFPALQGANTKMSASDLNS--AIFLTDTPKQVKNK 306 (405)
Q Consensus 238 ~~~lvp~G~DQd~~~~l~rdla~r~~------~~kp~~l~---~~~lp~L~G~~~KMSkS~~ns--aI~L~D~p~~i~~K 306 (405)
+|+||||.||+||++++||+|+|+| +++|..++ +++||+|+|+++|||||.+|+ +|||+|+|++|++|
T Consensus 148 -a~~vpvG~DQ~~~lel~Rdia~r~n~~yg~~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D~~~~i~~K 226 (348)
T 2yy5_A 148 -PDIVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVVKK 226 (348)
T ss_dssp -CSEEECCGGGHHHHHHHHHHHHHHHHHHCCCCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTCCHHHHHHH
T ss_pred -ccEEEecccHHHHHHHHHHHHHHhhhhcccccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecCCHHHHHHH
Confidence 7999999999999999999999997 67888777 699999999878999999986 99999999999999
Q ss_pred hhcccccCCccchhhhhhcCCCCchHHHHHHHHhccCChhhHH---------HHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q psy13709 307 VNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLE---------QIRKNYTSGALLTGELKKILIDTITPIV 377 (405)
Q Consensus 307 I~k~A~t~~~~t~e~~~~~ggn~~v~~~~~~l~~f~~~d~e~e---------ei~~~~~~G~l~~~elK~~La~~i~~~l 377 (405)
||+ |+||+..+++++ .+++|+++++++|+++| ++++++ +|+++|. | +++++||+.||++|++++
T Consensus 227 I~~-a~td~~~~~~~~--~~~~p~v~~~~~~~~~~--~~~~~~~~~~~~~~~el~~~~~-g-~~~~~~K~~La~~i~~~l 299 (348)
T 2yy5_A 227 IRQ-ATTDSFNKIRFA--SKTQPGVTNMLTILKAL--LKEPVNQSLTNQLGNDLEAYFS-T-KSYLDLKNALTEATVNLL 299 (348)
T ss_dssp HHT-CCCCSSCCCSCC--TTTCHHHHHHHHHHHHH--TTSGGGHHHHHHHCSCHHHHGG-G-CCHHHHHHHHHHHHHHHH
T ss_pred HHh-CCCCCccccccC--CCCCCchhhHHHHHHhC--ChHhhhhhcccchHHHHHHHHc-C-CCHHHHHHHHHHHHHHHH
Confidence 999 999998777776 57789999999999999 667899 9999999 7 899999999999999999
Q ss_pred HHHHHHHHHhHHHHHhhhcc
Q psy13709 378 TQHQEAMKGVTEEVLAQYMT 397 (405)
Q Consensus 378 ~~~qe~r~~~~~~~~~~~~~ 397 (405)
+|+|++|+++.|..|++++.
T Consensus 300 ~pire~~~~~~d~~~~~~l~ 319 (348)
T 2yy5_A 300 VNIQRKREQISREQVFNCLQ 319 (348)
T ss_dssp HHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHhcCchHHHHHH
Confidence 99999999996544777753
No 24
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=100.00 E-value=2.1e-60 Score=471.95 Aligned_cols=271 Identities=21% Similarity=0.301 Sum_probs=233.7
Q ss_pred eeeeecCCCCCCcchhhhHHHHHHHH--HHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q psy13709 94 FLYTGRGPSSDSMHLGHLIPFMFTKW--LQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFI 171 (405)
Q Consensus 94 ~iytG~~PT~~slHlGhli~~~~~~~--lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~kt~i 171 (405)
++|+||+||| +||||||+|++ .+| ||+ + ..++++|||+|+++. ..+++++++|+++++++|+|||+||+++.|
T Consensus 3 ~vysG~~PTG-~lHlGn~vg~l-~~~~~lQ~-g-~~~~~~IaD~ha~~~-~~~~e~i~~~~~~~~~~~la~Gldp~k~~i 77 (328)
T 1i6k_A 3 TIFSGIQPSG-VITIGNYIGAL-RQFVELQH-E-YNCYFCIVDQHAITV-WQDPHELRQNIRRLAALYLAVGIDPTQATL 77 (328)
T ss_dssp EEEEEECCCS-CCBHHHHHHTH-HHHHHHTT-T-SEEEEEECHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCCTTTEEE
T ss_pred EEEEeeCCCC-cccHHHHHHHH-HHHHHHHc-C-CcEEEEEeCceeecC-CCCHHHHHHHHHHHHHHHHHhCCChhhcEE
Confidence 7999999996 99999999986 566 688 3 457888999999987 689999999999999999999999999999
Q ss_pred eeCccccC---hHHHH----HHHHHHhhhCHHHHHHHhCCCCCCccccchhhhhhhcCCCcCchhhhhccCCCCCceeee
Q psy13709 172 FSDIDFMN---PSFYL----NILKIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPC 244 (405)
Q Consensus 172 ~~ns~~~~---~~~~~----~v~~l~~~~t~~~~~~~~g~~~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~lvp~ 244 (405)
|.||+|.. ..++. .+.+++++.++++..++ .+++|+|+|+||+|||||++. ++ .|+|||
T Consensus 78 f~qS~~~~~~~l~w~l~~~~~~~~l~r~~~~k~~~~~---~~~~~~g~f~YPvLQaaDil~------~~-----~~~vpv 143 (328)
T 1i6k_A 78 FIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAG---KEAVSAGLLTYPPLMAADILL------YN-----TDIVPV 143 (328)
T ss_dssp EEGGGCTHHHHHHHHHHHHSCHHHHHTCHHHHHHHTT---CSSCCHHHHTHHHHHHHHHHT------TT-----CSEEEC
T ss_pred EecCchhhhhHHHHHHhccccHHHHHHHHHHHHHHhc---cCCCCchhhccHHHHHHHHHH------hC-----CCEEec
Confidence 99999961 11111 12456666665544332 378999999999999999763 32 799999
Q ss_pred cCCchHHHHHHHHHhhhhC------CCCceeee---cccccCCCCCCccCCCCCCCCc--eeccCCHHHHHHHhhccccc
Q psy13709 245 AIDQDPYFRLTRDVAPKLG------YVKPALIH---STFFPALQGANTKMSASDLNSA--IFLTDTPKQVKNKVNKHAYS 313 (405)
Q Consensus 245 G~DQd~~~~l~rdla~r~~------~~kp~~l~---~~~lp~L~G~~~KMSkS~~nsa--I~L~D~p~~i~~KI~k~A~t 313 (405)
|.||+||++++||+|+|+| ++.|..+. +++||+|+|+++|||||.+|++ |||+|+|++|++|||+ |+|
T Consensus 144 G~DQ~~~iel~Rdia~r~n~~yg~~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d~~~~i~~KI~~-a~t 222 (328)
T 1i6k_A 144 GEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKS-AVT 222 (328)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHCSCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHHHHHHHHHH-CCC
T ss_pred ccchHHHHHHHHHHHHHhCcccccccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecCCHHHHHHHHHh-cCC
Confidence 9999999999999999998 56777664 6999999998789999999977 9999999999999999 999
Q ss_pred CCccchhhhhhcCCCCchHHHHHHHHhccCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhHHH
Q psy13709 314 GGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQHQEAMKGVTEE 390 (405)
Q Consensus 314 ~~~~t~e~~~~~ggn~~v~~~~~~l~~f~~~d~e~eei~~~~~~G~l~~~elK~~La~~i~~~l~~~qe~r~~~~~~ 390 (405)
|+..++.++. +++|++|++++|+++| +++++++|+++|. | +++++||+.||++|+++++|+|++|++++++
T Consensus 223 d~~~~~~~~~--~~~p~v~~~~~~~~~~--~~~~~~el~~~~~-g-~~~~~~K~~La~~i~~~l~pire~~~~~~~~ 293 (328)
T 1i6k_A 223 DSEGTIRYDK--EAKPGISNLLNIYSTL--SGQSIEELERQYE-G-KGYGVFKADLAQVVIETLRPIQERYHHWMES 293 (328)
T ss_dssp CSSCCCCCBT--TTBHHHHHHHHHHHHH--HCCCHHHHHHHTT-T-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCccccccCC--CCCcchhhHHHHHHHC--CchhHHHHHHHHc-C-CCHHHHHHHHHHHHHHHhHHHHHHHHHHhCC
Confidence 9987776663 6789999999999999 5678999999999 8 8999999999999999999999999998763
No 25
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=100.00 E-value=1.5e-60 Score=474.47 Aligned_cols=275 Identities=20% Similarity=0.331 Sum_probs=236.6
Q ss_pred CceeeeecCCCCCCcchhhhHHHHHHHH--HHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q psy13709 92 PFFLYTGRGPSSDSMHLGHLIPFMFTKW--LQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDST 169 (405)
Q Consensus 92 ~~~iytG~~PT~~slHlGhli~~~~~~~--lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~kt 169 (405)
..++|+|++||| .||||||+|++ .+| ||+. +.++|+|||+|+++. ..+++++++++++++++|+|||+||+|+
T Consensus 15 ~~~i~sG~~PTG-~lHLGh~vg~l-~~~~~lQ~~--~~~~~~iaD~hA~t~-~~~~~~~~~~~~~~~~~~lA~GlDp~k~ 89 (346)
T 3n9i_A 15 KPIVFSGAQPSG-ELTIGNYMGAL-RQWVQMQDD--YDCIYCIVDLHAITA-RQDPALLRKRTLDTLALYLACGIDPKKS 89 (346)
T ss_dssp CCEEEEEECSCS-CCBHHHHHHTH-HHHHTTTTT--SEEEEEECHHHHTTS-CCCHHHHHHHHHHHHHHHHHHTCCTTTS
T ss_pred CCEEEECcCCCC-cccHHHHHHHH-HHHHHHHhh--CcEEEEEecceeecC-CCCHHHHHHHHHHHHHHHHHcCCCccce
Confidence 348999999996 69999999986 577 8985 567888999999886 5689999999999999999999999999
Q ss_pred EEeeCccccC--hHHHHH-----HHHHHhhhCHHHHHHHhCCCCCCccccchhhhhhhcCCCcCchhhhhccCCCCCcee
Q psy13709 170 FIFSDIDFMN--PSFYLN-----ILKIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLI 242 (405)
Q Consensus 170 ~i~~ns~~~~--~~~~~~-----v~~l~~~~t~~~~~~~~g~~~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~lv 242 (405)
+||.||+|.. ..+|.. +.+++|+.++++...+. .+++++|+|+||+||||||++ ++ +|+|
T Consensus 90 ~if~qS~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~--~~~~~~g~~~YP~lQAaDil~------~~-----ad~v 156 (346)
T 3n9i_A 90 TIFVQSHVPEHSQLSWALNCYTYFGELSRMTQFKDKSARY--AENINAGLFDYPVLMAADILL------YQ-----TNQV 156 (346)
T ss_dssp EEEEGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHS--GGGCBHHHHHHHHHHHHHHHT------TT-----CSEE
T ss_pred EEEeccccccchHHHHHHHHHhhHHHHHHHHHHHHHHhcc--CCCCCchhHHhHHHHHHHHHH------hC-----ceEE
Confidence 9999999972 112221 35677888877766654 357999999999999999873 32 7999
Q ss_pred eecCCchHHHHHHHHHhhhhC------CCCceeee---cccccCCCCCCccCCCCCCC--CceeccCCHHHHHHHhhccc
Q psy13709 243 PCAIDQDPYFRLTRDVAPKLG------YVKPALIH---STFFPALQGANTKMSASDLN--SAIFLTDTPKQVKNKVNKHA 311 (405)
Q Consensus 243 p~G~DQd~~~~l~rdla~r~~------~~kp~~l~---~~~lp~L~G~~~KMSkS~~n--saI~L~D~p~~i~~KI~k~A 311 (405)
|||.||+||+++|||+|+|+| ++.|..+. +++||||+++++|||||++| |+|||+|+|++|++||++ |
T Consensus 157 pvG~DQ~~hleltRdia~rfn~~yg~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~k-A 235 (346)
T 3n9i_A 157 PVGEDQKQHLELSRDIASRFNNLYGDIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKR-A 235 (346)
T ss_dssp CCCGGGHHHHHHHHHHHHHHHHHHSSCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTSCHHHHHHHHHT-C
T ss_pred EeccchHHHHHHHHHHHHHhccccCCcccccchhccCCcccCccCCCCccccCCCCCCCCceecCCCCHHHHHHHHHh-C
Confidence 999999999999999999998 24565454 37999997655799999986 899999999999999999 9
Q ss_pred ccCCccchhhhhhcCCCCchHHHHHHHHhccCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhHH
Q psy13709 312 YSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQHQEAMKGVTE 389 (405)
Q Consensus 312 ~t~~~~t~e~~~~~ggn~~v~~~~~~l~~f~~~d~e~eei~~~~~~G~l~~~elK~~La~~i~~~l~~~qe~r~~~~~ 389 (405)
|||++.+.++++..+++|+++++++|++.| +++++++|+++|++| .+|+||+.|++.|+++|+|+|+||+++++
T Consensus 236 ~Td~~~~~~~~~~~~~~p~v~~l~~~~~~~--~~~~~eel~~~y~~~--~~g~lK~~lae~l~~~L~pirer~~~~~~ 309 (346)
T 3n9i_A 236 MTDSDEPALIRYDVEKKAGVSNLLDILSGV--TGQSIPELEAQFTGQ--MYGHLKGAVADAVSGMLSELQERYRTYRE 309 (346)
T ss_dssp CCCCCSSCCCCCCTTTCHHHHHHHHHHHHH--HCCCHHHHHHHTTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCccccCCCCCCCChhHHHHHHHhc--CCccHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999988766667779999999999999988 567899999999876 69999999999999999999999999985
No 26
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=100.00 E-value=2.6e-59 Score=461.89 Aligned_cols=284 Identities=20% Similarity=0.290 Sum_probs=249.9
Q ss_pred HHHHcCcccccCCHHHHHHHHhcCCCceeeeecCCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCccchhccCCCHH
Q psy13709 67 HLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKNIKPE 146 (405)
Q Consensus 67 ~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~~lt~e 146 (405)
.|++|| +..+.+.++|.+.++ ++++++|+||+||| +|||||+++++.++|||++ |..++++|||+++++.+..+++
T Consensus 5 ~l~~r~-~~e~~~~~~l~~~L~-~~~~~vy~G~~PTg-~lHlGhl~~l~~~~~lQ~~-g~~~~~~i~D~~a~~~~~~~~e 80 (314)
T 2zp1_A 5 EMIKRN-TSEIISEEELREVLK-KDEKSAYIGFEPSG-KIHLGHYLQIKKMIDLQNA-GFDIIILLADLAAYLNQKGELD 80 (314)
T ss_dssp HHHHTT-CSEEETHHHHHHHHT-SSSEEEEEEECCCS-SCBHHHHHHHHHHHHHHHT-TEEEEEEECHHHHHHTTCCCHH
T ss_pred HHHHcC-CeecCCHHHHHHHHc-CCCCEEEEccCCCC-CcchhhHHHHHHHHHHHHC-CCCEEEEEecceEecCCCCCHH
Confidence 688999 555667777777777 88999999999996 8999999999999999997 5778888999999998766899
Q ss_pred HHHHHHHHHHHHHHHcCCCCCceEEeeCcccc-ChHHHHHHHHHHhhhCHHHHHHHh---CCC-CCCccccchhhhhhhc
Q psy13709 147 EAKKLAYENAKAIIACGFKQDSTFIFSDIDFM-NPSFYLNILKIQKLVNGTTVKAIF---GLK-DFDSVGKFSFPAIQAA 221 (405)
Q Consensus 147 ~i~~~~~~~~~~~~A~G~dp~kt~i~~ns~~~-~~~~~~~v~~l~~~~t~~~~~~~~---g~~-~~~s~g~~~YpllQaa 221 (405)
++++|+.+++++++|||+| +.|++||+|+ ...+|..+.++++.+|++++.++. ++. +..|+|+|+||+||||
T Consensus 81 ~i~~~~~~~~~~~~a~G~d---~~~~~qs~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~~~~~~~~~g~~~YP~LQaa 157 (314)
T 2zp1_A 81 EIRKIGDYNKKVFEAMGLK---AKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIAREDENPKVAEVIYPIMQVN 157 (314)
T ss_dssp HHHHHHHHHHHHHHHTTCC---CEEEEGGGTTTSHHHHHHHHHHHHHSCHHHHHHHTTTTSCCCSSCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCC---eEEEECChhhcchHHHHHHHHHHCcCcHHHHhccchhhhhccCCCCchhhhhHHHHHH
Confidence 9999999999999999998 7888899998 456889999999999999999864 332 2239999999999999
Q ss_pred CCCcCchhhhhccCCCCCceeeecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCCCCceeccCCHH
Q psy13709 222 PSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPK 301 (405)
Q Consensus 222 D~~~~~f~~l~~~~~~~~~lvp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~ 301 (405)
|+++ ++ .+++|+|+||+||++++|++++ ++|.++++++||+|+|. +||||| ++|+|||+|+|+
T Consensus 158 Dil~------~~-----~~~v~~G~DQ~~~~~l~R~i~~----~~~~~~~~~~l~~l~G~-~KMSKS-~~~~I~L~d~~~ 220 (314)
T 2zp1_A 158 TSHY------LG-----VDVAVGGMEQRKIHMLARELLP----KKVVCIHNPVLTGLDGE-GKMSSS-KGNFIAVDDSPE 220 (314)
T ss_dssp HHHH------HT-----CSEEEEEGGGHHHHHHHHHHSS----SCCEEEEECCCBCTTSS-SBCCTT-TTCSCBTTCCHH
T ss_pred hHHh------hC-----CCEEEcChhHHHHHHHHHHhcC----CCcEEeeccccccCCcc-cccCCC-CcceecCCCCHH
Confidence 9763 33 6899999999999999999997 68999999999999973 799999 566999999999
Q ss_pred HHHHHhhcccccCCccchhhhhhcCCCCchHHHHHHHHhcc---------------CChhhHHHHHHHHhcCCCCHHHHH
Q psy13709 302 QVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFL---------------EDDDKLEQIRKNYTSGALLTGELK 366 (405)
Q Consensus 302 ~i~~KI~k~A~t~~~~t~e~~~~~ggn~~v~~~~~~l~~f~---------------~~d~e~eei~~~~~~G~l~~~elK 366 (405)
+|++|||+ ||||++ +++.|++|+|+++|+ .+.+++++|+++|++|+++|++||
T Consensus 221 ~i~~KI~~-a~td~~-----------~~~~~~~~~~~~~~~~~~~~i~r~~k~g~~~~~~~~eei~~~~~~g~~~~~~~K 288 (314)
T 2zp1_A 221 EIRAKIKK-AYCPAG-----------VVEGNPIMEIAKYFLEYPLTIKRPEKFGGDLTVNSYEELESLFKNKELHPMYLK 288 (314)
T ss_dssp HHHHHHHH-SCCCTT-----------CCTTCHHHHHHHHHCCSSEEECCCGGGTCCEEESSHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHh-CCCCCC-----------CCCCCcHHHHHHHHhcCCcceeehhhccCCCCcCCHHHHHHHHHcCCCCHHHHH
Confidence 99999999 999974 345688999999986 144689999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHH
Q psy13709 367 KILIDTITPIVTQHQEAMKG 386 (405)
Q Consensus 367 ~~La~~i~~~l~~~qe~r~~ 386 (405)
+.||++|+++++|+|++++.
T Consensus 289 ~~la~~i~~~l~p~r~~~~~ 308 (314)
T 2zp1_A 289 NAVAEELIKILEPIRKRLLE 308 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999873
No 27
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.4e-60 Score=485.04 Aligned_cols=292 Identities=14% Similarity=0.162 Sum_probs=247.9
Q ss_pred HHHHHHcCcccccCCHHHHHHHHhcCCCceeeeecCCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCccchhccC--
Q psy13709 65 VHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKN-- 142 (405)
Q Consensus 65 ~~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~~-- 142 (405)
...|++||++++|++++.|.+.++ ++++++|+||+|||++|||||+++++.++|||++|+. ++++|||+++.+.+.
T Consensus 6 ~~~L~~RG~~~~~~~~e~L~~~L~-~~~~~iy~G~dPTg~sLHLGhlv~l~~l~~lQ~~G~~-~i~lIgD~ta~igdpsk 83 (432)
T 2jan_A 6 LDELSWRGLIAQSTDLDTLAAEAQ-RGPMTVYAGFDPTAPSLHAGHLVPLLTLRRFQRAGHR-PIVLAGGATGMIGDPRD 83 (432)
T ss_dssp HHHHHHHTCCSEESCHHHHHHHHH-HSCCEEEEEECCSSSSCBGGGHHHHHHHHHHHHTTCE-EEEEECHHHHHHHCCCC
T ss_pred HHHHHHcCchhhcCCHHHHHHHHc-CCCCEEEEeeCCCCCCcCHHHHHHHHHHHHHHHCCCc-EEEEEcCcEEEccCCcc
Confidence 578999999999999999999987 7789999999999878999999999999999998654 566689999988764
Q ss_pred ------CCHHHHHHHHHHH---HHHHHHcCCCCCceEEeeCccccC-hHHHHHHHHHHhhhCHHH------HHHHhCCCC
Q psy13709 143 ------IKPEEAKKLAYEN---AKAIIACGFKQDSTFIFSDIDFMN-PSFYLNILKIQKLVNGTT------VKAIFGLKD 206 (405)
Q Consensus 143 ------lt~e~i~~~~~~~---~~~~~A~G~dp~kt~i~~ns~~~~-~~~~~~v~~l~~~~t~~~------~~~~~g~~~ 206 (405)
++.+++++|+..+ ++.++|||+||+++.||+|++|+. ..++..+..+++++|+++ ++.|+ ..+
T Consensus 84 ~~~R~~~~~e~i~~n~~~~~~~~~~~La~G~dp~k~~i~~nsdw~~~~~~l~~lr~l~~~~tv~~m~~~~~~k~r~-~~~ 162 (432)
T 2jan_A 84 VGERSLNEADTVAEWTERIRGQLERFVDFDDSPMGAIVENNLEWTGSLSAIEFLRDIGKHFSVNVMLARDTIRRRL-AGE 162 (432)
T ss_dssp TTTSGGGHHHHHHHHHHHHHHHHHHHSCCSSSTTCCEEEETHHHHSSCBHHHHHHHTGGGCBHHHHHHSHHHHHHT-STT
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECchhcccCcHHHHHHHHhccCcHHHHhcchHHhhhh-cCC
Confidence 7889999999644 777899999999999999999983 334444444566666655 45566 357
Q ss_pred CCccccchhhhhhhcCCCcCchhhhhccCCCCCceeeecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCccCC
Q psy13709 207 FDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMS 286 (405)
Q Consensus 207 ~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~lvp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMS 286 (405)
++|+|+|+||+|||||++ ++++.. ..+++|||.|||||+++|||+|+|+|..+|+.++.|+||+++| +|||
T Consensus 163 ~is~~ef~YPlLQaaDil-----~l~~~~--~~~i~~gG~DQ~~ni~lgrdlarr~~~~~~~~l~~plL~~ldG--~KMS 233 (432)
T 2jan_A 163 GISYTEFSYLLLQANDYV-----ELHRRH--GCTLQIGGADQWGNIIAGVRLVRQKLGATVHALTVPLVTAADG--TKFG 233 (432)
T ss_dssp CCBHHHHHHHHHHHHHHH-----HHHHHH--CCCEEEECSTTHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTS--CBTT
T ss_pred CcchHHHHHHHHHHHHHH-----HHhccC--CCcEEeccHHHHHHHHHHHHHHHHhCCCCccccccccccCCCc--CcCC
Confidence 899999999999999965 343210 1455679999999999999999999999999999999999999 7999
Q ss_pred CCCCCCceeccC---CHHHHHHHhhcccccCCccchhhhhhcCCCCchHHHHHHHHhccC-ChhhHHHHHHHHhcCCCCH
Q psy13709 287 ASDLNSAIFLTD---TPKQVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLE-DDDKLEQIRKNYTSGALLT 362 (405)
Q Consensus 287 kS~~nsaI~L~D---~p~~i~~KI~k~A~t~~~~t~e~~~~~ggn~~v~~~~~~l~~f~~-~d~e~eei~~~~~~G~l~~ 362 (405)
||.+|++|||+| +|+++++||++ + + | +.+++||++|+. +++++++|+++|.+|. ++
T Consensus 234 KS~~nsaI~L~d~~tsp~~i~qki~~-~-~----------------D-~~v~~~l~l~t~~~~~ei~~l~~~~~~g~-~~ 293 (432)
T 2jan_A 234 KSTGGGSLWLDPQMTSPYAWYQYFVN-T-A----------------D-ADVIRYLRWFTFLSADELAELEQATAQRP-QQ 293 (432)
T ss_dssp BCSSSCBCBSSTTTSCHHHHHHHHHT-C-C----------------H-HHHHHHHHHHSCCCHHHHHHHHHHHHHCG-GG
T ss_pred CCCCCCeEEccCCCCCHHHHHHHHhc-C-C----------------c-hhHHHHHHHHHcCChHHHHHHHHHHhhcc-CH
Confidence 999999999999 99999999999 3 2 1 335788888864 8899999999999996 99
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhH
Q psy13709 363 GELKKILIDTITPIVTQHQEAMKGVT 388 (405)
Q Consensus 363 ~elK~~La~~i~~~l~~~qe~r~~~~ 388 (405)
+++|+.||++|++++|+.++.++...
T Consensus 294 ~~~K~~LA~~v~~~~hg~~~~~~a~~ 319 (432)
T 2jan_A 294 RAAQRRLASELTVLVHGEAATAAVEH 319 (432)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 99999999999999999999877554
No 28
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=100.00 E-value=3.1e-59 Score=470.93 Aligned_cols=292 Identities=20% Similarity=0.309 Sum_probs=241.0
Q ss_pred HHHHHHcCcccccCCHHHHHHHHhcCCCceeeeecCCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCccchhccCCC
Q psy13709 65 VHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKNIK 144 (405)
Q Consensus 65 ~~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~~lt 144 (405)
...|++||+ ....+.+.|.+.+++ +++++|+||+||| +|||||++++++.+|+|++ |+.++++|+|+++++.+..+
T Consensus 10 ~~~l~~Rg~-~e~~~~~~L~~~L~~-~~~~vy~G~~PTG-~lHlG~~~~~l~~~~~~q~-g~~~i~~I~D~ha~t~~~~~ 85 (372)
T 1n3l_A 10 KLHLITRNL-QEVLGEEKLKEILKE-RELKIYWGTATTG-KPHVAYFVPMSKIADFLKA-GCEVTILFADLHAYLDNMKA 85 (372)
T ss_dssp HHHHHHTTC-SEEECHHHHHHHHTT-SCCEEEEEECCSS-CCBGGGHHHHHHHHHHHHT-TCEEEEEECHHHHHHTTTTS
T ss_pred HHHHHHcCC-eeecCHHHHHHHHhc-CCCEEEeCcCCCC-cccHHHHHHHHHHHHHHHC-CCCEEEEEcCCceeeCCCCC
Confidence 578999996 333344555555554 6789999999997 9999999999998998986 56788889999999876555
Q ss_pred HHHHHHHH---HHH-HHH-HHHcCCCCCceEEeeCcccc-ChHHHHHHHHHHhhhCHHHHHHH----hCCCCCCccccch
Q psy13709 145 PEEAKKLA---YEN-AKA-IIACGFKQDSTFIFSDIDFM-NPSFYLNILKIQKLVNGTTVKAI----FGLKDFDSVGKFS 214 (405)
Q Consensus 145 ~e~i~~~~---~~~-~~~-~~A~G~dp~kt~i~~ns~~~-~~~~~~~v~~l~~~~t~~~~~~~----~g~~~~~s~g~~~ 214 (405)
.+++.++. .++ +.. ++|||+||+++.||.||+|. ...++.+++++++.+|.+++++. +++.+++++|+|+
T Consensus 86 ~~~l~~~~~~~~~~~i~~~lla~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~~~~~~~v~~~~~~~~~g~~~ 165 (372)
T 1n3l_A 86 PWELLELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVKQVEHPLLSGLL 165 (372)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCCCTTEEEEEGGGTTTSHHHHHHHHHHHTTSCHHHHHHHTTTTSCCCSSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChhhcEEEECCeecccHHHHHHHHHHHhhCcHHHHHhchhhhhcccCCCcceeee
Confidence 55654444 333 443 68999999999999999994 56777888899999999999875 3556789999999
Q ss_pred hhhhhhcCCCcCchhhhhccCCCCCceeeecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCCCCce
Q psy13709 215 FPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAI 294 (405)
Q Consensus 215 YpllQaaD~~~~~f~~l~~~~~~~~~lvp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI 294 (405)
||+|||||++. ++ .+++|+|.||++|++++||+++|+|+++|..++.++||+|+| +|||||.+|++|
T Consensus 166 YP~lQaaDil~------~~-----a~~v~~G~DQ~~~~~l~rdl~~r~~~~~p~~l~~pll~gldG--~KMSKS~~ns~I 232 (372)
T 1n3l_A 166 YPGLQALDEEY------LK-----VDAQFGGIDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLTG--SKMSSSEEESKI 232 (372)
T ss_dssp HHHHHHHHHHH------TT-----CSEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCCCSSC--C-------CCSC
T ss_pred cchHhhccHHH------hc-----CCEEEcChhHHHHHHHHHHHHHHcCCCCCEEEecCccCCCCc--ccccCCCCCCeE
Confidence 99999999762 33 588999999999999999999999999999999999999998 799999999899
Q ss_pred eccCCHHHHHHHhhcccccCCccchhhhhhcCCCCchHHHHHHHHh--------ccC----------ChhhHHHHHHHHh
Q psy13709 295 FLTDTPKQVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTF--------FLE----------DDDKLEQIRKNYT 356 (405)
Q Consensus 295 ~L~D~p~~i~~KI~k~A~t~~~~t~e~~~~~ggn~~v~~~~~~l~~--------f~~----------~d~e~eei~~~~~ 356 (405)
||+|+|++|++||++ ||||++ +++.+.++.|+++ |+. +.+++++|+++|.
T Consensus 233 ~L~d~p~~i~kKi~~-A~td~~-----------~~~d~~v~~~lk~~l~~~~~~f~~er~~~~g~~~~~~~i~el~~~~~ 300 (372)
T 1n3l_A 233 DLLDRKEDVKKKLKK-AFCEPG-----------NVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDLEKDFA 300 (372)
T ss_dssp BTTCCHHHHHHHHHT-CCCCTT-----------CCSSCHHHHHHHHTTGGGTTCEEECCCGGGTCCEEESSHHHHHHHHH
T ss_pred eccCCHHHHHHHHHH-ccCCCC-----------CCCcccHHHHHHHhhhhhhcceeecccccccCCCCHHHHHHHHHHHh
Confidence 999999999999999 999874 3444567888886 531 4578999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhHHHHHHHH
Q psy13709 357 SGALLTGELKKILIDTITPIVTQHQEAMK 385 (405)
Q Consensus 357 ~G~l~~~elK~~La~~i~~~l~~~qe~r~ 385 (405)
+|+++|++||+.||++|+++++|+|++|+
T Consensus 301 ~g~~~~~~~K~~La~~i~~~l~p~r~~~~ 329 (372)
T 1n3l_A 301 AEVVHPGDLKNSVEVALNKLLDPIREKFN 329 (372)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHHHHHHhHHHHHhc
Confidence 99999999999999999999999999998
No 29
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=4.7e-59 Score=499.81 Aligned_cols=308 Identities=19% Similarity=0.238 Sum_probs=263.8
Q ss_pred HHHHHcCcccccCCHHHHHHHHhcCCCceeeeecCCCCCCcchhhhHHHH-HHHHHHhcCCccEEEEecCccchhcc--C
Q psy13709 66 HHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFM-FTKWLQDVFDVPLVIQLTDDEKSLWK--N 142 (405)
Q Consensus 66 ~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~PT~~slHlGhli~~~-~~~~lQ~~~~~~v~I~i~D~e~~l~~--~ 142 (405)
-.+++||.... .+.++|.+.+++++++++|+||+||| +|||||+++.. .+++||++ |+.++++|||+++.+.+ .
T Consensus 15 ~~~~~~~~~e~-~~~~eL~~~L~~~~~~~vy~G~~PTg-~lHLG~~v~~~~~~~~lQ~~-G~~~~~lIaD~ha~~~d~~~ 91 (690)
T 3p0j_A 15 YKLLRSVGEEC-IQESELRNLIEKKPLIRCYDGFEPSG-RMHIAQGIFKAVNVNKCTAA-GCEFVFWVADWFALMNDKVG 91 (690)
T ss_dssp HHHHHHTCSEE-ECHHHHHHHHHHCTTEEEEEEECCCS-CCBHHHHHHHHHHHHHHHHT-TEEEEEEECCGGGGGGCTTT
T ss_pred HHHHhhCceee-cCHHHHHHHHhcCCCceEEeeecCCC-cchhHhhHHHHHHHHHHHHC-CCcEEEEEeeeEEEecCCCc
Confidence 46778888764 46778888888889999999999997 99999987643 47889997 57788889999999876 3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCceEEeeCcccc-C--hHHHHHHHHHHhhhCHHHHHHH---hCCC-CCCccccchh
Q psy13709 143 IKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFM-N--PSFYLNILKIQKLVNGTTVKAI---FGLK-DFDSVGKFSF 215 (405)
Q Consensus 143 lt~e~i~~~~~~~~~~~~A~G~dp~kt~i~~ns~~~-~--~~~~~~v~~l~~~~t~~~~~~~---~g~~-~~~s~g~~~Y 215 (405)
.+.+++++|+.++++.++|||+||+++.||.||+|+ . ..+|..+.++++++|++++.++ .|+. .++|+|+|+|
T Consensus 92 ~~~e~i~~~~~~~~~~~lA~GlDp~k~~i~~qS~~v~~~~~l~~~~~~~i~~~~tv~~m~~~~~~~~r~~~~i~~g~f~Y 171 (690)
T 3p0j_A 92 GELEKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRMVLDIGRQNTIARIKKCCTIMGKTEGTLTAAQVLY 171 (690)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCCGGGEEEEEHHHHHTTSHHHHHHHHHHHHHTSCHHHHHTTC-------CCCCCSCSSH
T ss_pred chHHHHHHHHHHHHHHHHHcCCChHHeEEEechHHHHhhHHHHHHHHHHHHhhCCHHHHHhhhhhhhhccCCCchhhHhh
Confidence 578999999999999999999999999999999997 2 3578888999999999998753 3433 2489999999
Q ss_pred hhhhhcCCCcCchhhhhccCCCCCceeeecCCchHHHHHHHHHhhhhCCC-CceeeecccccCCCCCCccCCCCCCCCce
Q psy13709 216 PAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGYV-KPALIHSTFFPALQGANTKMSASDLNSAI 294 (405)
Q Consensus 216 pllQaaD~~~~~f~~l~~~~~~~~~lvp~G~DQd~~~~l~rdla~r~~~~-kp~~l~~~~lp~L~G~~~KMSkS~~nsaI 294 (405)
|+|||||+++ ++ .+++|||.||+||+++|||+|+|+|.. +|.++++++||+|+++++|||||.+||+|
T Consensus 172 PlLQAaDil~------~~-----ad~vpvG~DQ~~~l~l~Rdla~r~n~~~~p~~l~~~~l~gL~dG~~KMSKS~~~~~I 240 (690)
T 3p0j_A 172 PLMQCCDIFF------LK-----ADICQLGLDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAI 240 (690)
T ss_dssp HHHHHHHHHH------TT-----CSEECCBGGGHHHHHHHHHHHHHTTCCCCCEEEEBCCCCCSSTTCSSCBTTBGGGSC
T ss_pred HHHHHHHHHh------hC-----CCEEeccccHHHHHHHHHHHHHHhCCCCCceEeecCeeecCCCCCcCCCCCCCCCee
Confidence 9999999873 33 579999999999999999999999986 78889999999994434699999997899
Q ss_pred eccCCHHHHHHHhhcccccCCcc-chhhhhhcCCC---CchHHHHHHHHhccC------------ChhhHHHHHHHHhcC
Q psy13709 295 FLTDTPKQVKNKVNKHAYSGGQA-TVEEHRELGGN---CDVDIAYQYLTFFLE------------DDDKLEQIRKNYTSG 358 (405)
Q Consensus 295 ~L~D~p~~i~~KI~k~A~t~~~~-t~e~~~~~ggn---~~v~~~~~~l~~f~~------------~d~e~eei~~~~~~G 358 (405)
||+|+|++|++|||+ ||||++. +.++++..|++ ++.|++|+|+++|+. +++++++|+++|++|
T Consensus 241 ~L~D~p~~i~kKI~~-A~td~~~~~~~~~~d~g~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~eel~~~y~~G 319 (690)
T 3p0j_A 241 FMEDTEEDVARKIRQ-AYCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVYARPGAAATIDGTTYATYEDLEQAFVSD 319 (690)
T ss_dssp BTTCCHHHHHHHHHT-SCCCSSCCCCCCCCTTCCCCCCSSCCHHHHHHHHTTTTSTTCCEEETTEEESSHHHHHHHHHHT
T ss_pred eccCCHHHHHHHHHh-CcCCCcccccccccCCCCcccCCCCchHHHHHHHhhcccccccccccCCCcchHHHHHHHHHcC
Confidence 999999999999999 9999764 44556666665 688999999999853 357899999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhHHHHHHHHHhH
Q psy13709 359 ALLTGELKKILIDTITPIVTQHQEAMKGVT 388 (405)
Q Consensus 359 ~l~~~elK~~La~~i~~~l~~~qe~r~~~~ 388 (405)
+++|++||+.||++|+++|+|+|++|++..
T Consensus 320 ~l~~~dlK~~lae~i~~~L~Pirer~~~~~ 349 (690)
T 3p0j_A 320 EVSEDALKSCLIDEVNALLEPVRQHFASNE 349 (690)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 999999999999999999999999998654
No 30
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=100.00 E-value=1.1e-58 Score=471.93 Aligned_cols=289 Identities=15% Similarity=0.212 Sum_probs=240.1
Q ss_pred HHHHHHcCcccccCCHHHHHHHHhcCCCceeeeecCCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCccchhccC--
Q psy13709 65 VHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKN-- 142 (405)
Q Consensus 65 ~~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~~-- 142 (405)
...|.+||++++|++.++|.+.++ ++++++|+||+|||+|||||||++++.++|||++|+ .++++|||+|+.+.+.
T Consensus 4 ~~~L~~Rg~~~~~~~~~~L~~~L~-~~~~~iy~G~dPTg~sLHlGh~v~l~~l~~lQ~~G~-~~i~lIgd~ta~igdpsg 81 (419)
T 2ts1_A 4 LAELQWRGLVNQTTDEDGLRKLLN-EERVTLYCGFDPTADSLHIGHLATILTMRRFQQAGH-RPIALVGGATGLIGDPSG 81 (419)
T ss_dssp HHHHHHHTCCSEESCHHHHHHHHH-HSCCEEEEEECCSSSSCBGGGHHHHHHHHHHHHTTC-EEEEEECTTGGGTCCCTT
T ss_pred HHHHHHcCchhhcCCHHHHHHHHc-CCCCEEEEeeCCCCCCccHHHHHHHHHHHHHHHCCC-cEEEEEcCceeEecCCCC
Confidence 568999999999999999999987 778999999999998899999999999999999865 4566689999987642
Q ss_pred -------CCHHHHHHHHHHH---HHHHHHcCCCCCceEEeeCcccc-ChHHHHHHH------HHHhhhCHHHHHHHhCCC
Q psy13709 143 -------IKPEEAKKLAYEN---AKAIIACGFKQDSTFIFSDIDFM-NPSFYLNIL------KIQKLVNGTTVKAIFGLK 205 (405)
Q Consensus 143 -------lt~e~i~~~~~~~---~~~~~A~G~dp~kt~i~~ns~~~-~~~~~~~v~------~l~~~~t~~~~~~~~g~~ 205 (405)
++.+++++|+..+ ++.+++||+||+++.||+|++|+ ...++..+. .+++|..+..+++|+ +
T Consensus 82 k~~~R~~l~~e~i~~n~~~~~~q~~~~L~~g~dp~k~~i~~ns~w~~~~~~~~~l~~~~~~~tv~rm~~~~~~k~r~--~ 159 (419)
T 2ts1_A 82 KKSERTLNAKETVEAWSARIKEQLGRFLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQSRI--E 159 (419)
T ss_dssp CSSCCCCCCHHHHHHHHHHHHHHHTTSSCSSCSSSCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTSHHHHTTT--T
T ss_pred ccccccCCCHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEchhhhhhchHHHHHHHHhcccCHHHHhccchhhhcc--C
Confidence 4899999999755 55677899999999999999997 222333233 344454444555555 5
Q ss_pred CCCccccchhhhhhhcCCCcCchhhhhccCCCCCce-eeecCCchHHHHHHHHHhhhh-CCCCceeeecccccCCCCCCc
Q psy13709 206 DFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCL-IPCAIDQDPYFRLTRDVAPKL-GYVKPALIHSTFFPALQGANT 283 (405)
Q Consensus 206 ~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~l-vp~G~DQd~~~~l~rdla~r~-~~~kp~~l~~~~lp~L~G~~~ 283 (405)
+++|+|+|+||+|||||++ ++++ +++|. +|||+|||||+++|||+|+|+ |..+|+.++.|+||+++| +
T Consensus 160 ~~is~~ef~YPlLQaaDil-----~l~~---~~~~~i~~gG~DQ~~ni~lgrdlarr~~~~~~~~~lt~pll~~ldG--~ 229 (419)
T 2ts1_A 160 TGISFTEFSYMMLQAYDFL-----RLYE---TEGCRLQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADG--T 229 (419)
T ss_dssp TCCCHHHHHHHHHHHHHHH-----HHHH---HHCEEEEEEEGGGHHHHHHHHHHHHHHHC--CCEEEEECCCCCTTS--C
T ss_pred CCcchHHHHHHHHHHHHHH-----HHhc---cCCCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeecccccccCCCc--c
Confidence 7899999999999999965 3442 12454 568999999999999999999 988999999999999999 7
Q ss_pred cCCCCCCCCceeccC---CHHHHHHHhhcccccCCccchhhhhhcCCCCchHHHHHHHHhccC-ChhhHHHHHHHHhcCC
Q psy13709 284 KMSASDLNSAIFLTD---TPKQVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLE-DDDKLEQIRKNYTSGA 359 (405)
Q Consensus 284 KMSkS~~nsaI~L~D---~p~~i~~KI~k~A~t~~~~t~e~~~~~ggn~~v~~~~~~l~~f~~-~d~e~eei~~~~~~G~ 359 (405)
|||||.+| +|||+| +|+++++||++ + + .+.+++||++|+. +.+++++|+++|.+|.
T Consensus 230 KMSKS~~n-aI~L~d~~tsp~~i~qki~~-~-~-----------------D~~v~~~l~l~t~~~~~ei~~l~~~~~~g~ 289 (419)
T 2ts1_A 230 KFGKTESG-TIWLDKEKTSPYEFYQFWIN-T-D-----------------DRDVIRYLKYFTFLSKEEIEALEQELREAP 289 (419)
T ss_dssp CTTCCSSC-CCBSSTTTSCHHHHHHHHHT-C-C-----------------HHHHHHHHHHHCCCCHHHHHHHHHHHHHCT
T ss_pred cccCCCCC-eEecCCCCCCHHHHHHHHhc-C-C-----------------chhHHHHHHHHHcCCHHHHHHHHHHHHccC
Confidence 99999977 999999 99999999999 3 1 1446888888864 7899999999999996
Q ss_pred CCHHHHHHHHHHHHHHhhHHHHHHHHHhH
Q psy13709 360 LLTGELKKILIDTITPIVTQHQEAMKGVT 388 (405)
Q Consensus 360 l~~~elK~~La~~i~~~l~~~qe~r~~~~ 388 (405)
+++++|+.||++|++++|+.++..+...
T Consensus 290 -~~~~~K~~LA~~v~~~~hg~~~~~~a~~ 317 (419)
T 2ts1_A 290 -EKRAAQKTLAEEVTKLVHGEEALRQAIR 317 (419)
T ss_dssp -TSCHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 9999999999999999999999876544
No 31
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=100.00 E-value=1.5e-58 Score=462.94 Aligned_cols=293 Identities=17% Similarity=0.174 Sum_probs=227.8
Q ss_pred HHHHHHcCcc--cccC-----CHHHHHHHHhcCCCceeeeecCCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCccc
Q psy13709 65 VHHLLRRGIF--FSHR-----DMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEK 137 (405)
Q Consensus 65 ~~~l~~RGl~--~~~~-----d~~~ll~~~~~~~~~~iytG~~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e~ 137 (405)
.+.|++||++ +.++ +++++|+..++|+|+++|+||+|||.+|||||+++++.++|||++| ..++++|||+++
T Consensus 12 ~~~l~~Rg~~~~~~~~~~~~~~L~~~L~~~~~g~~~~vy~G~~PTg~sLHLGhl~~l~~~~~lQ~~G-~~~~~lIaD~ha 90 (356)
T 2pid_A 12 LAAQKARGLFKDFFPETGTKIELPELFDRGTASFPQTIYCGFDPTADSLHVGHLLALLGLFHLQRAG-HNVIALVGGATA 90 (356)
T ss_dssp HHHHHHHTSCCEEECSSCTTSCGGGGC-------CCEEEEEECCSSSSCBHHHHHHHHHHHHHHHTT-CEEEEEECTTGG
T ss_pred HHHHHHcCChheeCCccccHHHHHHHHhcCccCCCCEEEEeecCCCCcccHHHHHHHHHHHHHHHCC-CcEEEEEcccee
Confidence 7899999999 6676 7888887666677899999999998789999999999999999975 567777999999
Q ss_pred hhccC---------CCHHHHHHHHHHHHHHHHHcCCCCCc-----------eEEeeCcccc-ChHHHHHHHHHHh-----
Q psy13709 138 SLWKN---------IKPEEAKKLAYENAKAIIACGFKQDS-----------TFIFSDIDFM-NPSFYLNILKIQK----- 191 (405)
Q Consensus 138 ~l~~~---------lt~e~i~~~~~~~~~~~~A~G~dp~k-----------t~i~~ns~~~-~~~~~~~v~~l~~----- 191 (405)
.+.+. ++++++++|+++++++++|+ +||++ +.|++|++|+ ...++..+..+++
T Consensus 91 l~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~a~-lDp~~~~~qs~~~~~~~~i~~ns~w~~~~~~~~~l~~~~~~~~v~ 169 (356)
T 2pid_A 91 RLGDPSGRTKEREALETERVRANARALRLGLEAL-AANHQQLFTDGRSWGSFTVLDNSAWYQKQHLVDFLAAVGGHFRMG 169 (356)
T ss_dssp GTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHSCCSSCCCCEEEEETHHHHTTCBHHHHHHHHGGGSBHH
T ss_pred eecCCcccccccccCCHHHHHHHHHHHHHHHHHh-cChhhccccccCCCcceEEEechHhhhhccHHHHHHHHhcceeHH
Confidence 88642 47999999999999999999 88754 8999999998 3334444444444
Q ss_pred -hhCHHHHHHHhCCCCCCccccchhhhhhhcCCCcCchhhhhccCCCCCceeeecCCchHHHHHHHHHhhhhCCCCceee
Q psy13709 192 -LVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGYVKPALI 270 (405)
Q Consensus 192 -~~t~~~~~~~~g~~~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~lvp~G~DQd~~~~l~rdla~r~~~~kp~~l 270 (405)
|....+++.++...+++|+|+|+||+|||||+++ +++. ...+++|||+||+||+++|||+|+|+|..+|+.+
T Consensus 170 ~m~~~~~~k~r~~~~~~is~g~f~YPvLQAaDil~-----l~~~--~~~~i~p~G~DQ~~~i~l~rdla~r~n~~~~~~l 242 (356)
T 2pid_A 170 TLLSRQSVQLRLKSPEGMSLAEFFYQVLQAYDFYY-----LFQR--YGCRVQLGGSDQLGNIMSGYEFINKLTGEDVFGI 242 (356)
T ss_dssp HHHHCHHHHHHHTSTTCCBHHHHHHHHHHHHHHHH-----HHHH--HCCCEEEEEGGGHHHHHHHHHHHHHHSSCCCEEE
T ss_pred HHhcchHHHHhhccCCCCchHHHHHHHHHHHHHHH-----Hhcc--CCCcEEeccHHHHHHHHHHHHHHHHhCCCCcccc
Confidence 4444555666655568999999999999999763 3221 0146678999999999999999999999999999
Q ss_pred ecccccCCCCCCccCCCCCCCCceeccC---CHHHHHHHhhcccccCCccchhhhhhcCCCCchHHHHHHHHhccC-Chh
Q psy13709 271 HSTFFPALQGANTKMSASDLNSAIFLTD---TPKQVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLE-DDD 346 (405)
Q Consensus 271 ~~~~lp~L~G~~~KMSkS~~nsaI~L~D---~p~~i~~KI~k~A~t~~~~t~e~~~~~ggn~~v~~~~~~l~~f~~-~d~ 346 (405)
+.|+||+|+| +|||||.+| +|||+| +|++|++||++ + + | +.+++||++|+. +++
T Consensus 243 ~~pll~~ldG--~KMSKS~~n-aI~L~d~~tsp~~i~~ki~~-~-~----------------D-~~v~~~l~~~t~~~~~ 300 (356)
T 2pid_A 243 TVPLITSTTG--AKLGKSAGN-AVWLNRDKTSPFELYQFFVR-Q-P----------------D-DSVERYLKLFTFLPLP 300 (356)
T ss_dssp EECCCC----------------CCBSSTTTSCHHHHHHHHHT-C-C----------------H-HHHHHHHHHHCCCCHH
T ss_pred ccccccCCCc--ccccCCCCC-eeeccCCCCCHHHHHHHHHc-C-C----------------c-hhHHHHHHHHHcCCch
Confidence 9999999999 799999766 999999 99999999999 3 2 1 235888888864 889
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhHH
Q psy13709 347 KLEQIRKNYTSGALLTGELKKILIDTITPIVTQHQEAMKGVTE 389 (405)
Q Consensus 347 e~eei~~~~~~G~l~~~elK~~La~~i~~~l~~~qe~r~~~~~ 389 (405)
++++|+++|++| .+++++|+.||++|++++|+.++.++....
T Consensus 301 ~i~~l~~~~~~g-~~~~~~K~~La~~v~~~l~g~~~~~~a~~~ 342 (356)
T 2pid_A 301 EIDHIMQLHVKE-PERRGPQKRLAAEVTKLVHGREGLDSAKRC 342 (356)
T ss_dssp HHHHHHHHHHHC-GGGCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 999999999998 599999999999999999999999886653
No 32
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=100.00 E-value=4.3e-58 Score=469.45 Aligned_cols=284 Identities=17% Similarity=0.187 Sum_probs=230.3
Q ss_pred HHHHHHcCcccccCCHHHHHHHHhcCCCceeeeecCCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCccchhccC--
Q psy13709 65 VHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKN-- 142 (405)
Q Consensus 65 ~~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~~-- 142 (405)
.+.+++||++... +.+.|.+.+++++|+++|+||+|||++|||||+++++.++|||++| +.++++|||+|+++.+.
T Consensus 11 ~~~li~Rg~~e~~-~~~~L~~~L~~~~~~~vy~G~dPTg~sLHlGh~v~l~~l~~lQ~~G-~~~i~lIgD~ta~igdpsg 88 (432)
T 1h3f_A 11 ALALLKRGAEEIV-PEEELLAKLKEGRPLTVKLGADPTRPDLHLGHAVVLRKMRQFQELG-HKVVLIIGDFTGMIGDPSG 88 (432)
T ss_dssp HHHHHHTTCSEEE-THHHHHHHHHTCSCCEEEEEECTTCCSCBHHHHHHHHHHHHHHHTT-CEEEEEECCCC--------
T ss_pred HHHHHHcchHHhC-CHHHHHHHHhcCCCcEEEEcccCCCCCCchhhHHHHHHHHHHHHCC-CCEEEEEccceEEecCCCC
Confidence 6799999995544 3455666666689999999999999899999999999999999985 55777899999998753
Q ss_pred -------CCHHHHHHHHHHHHHHHHHcCCC--CCceEEeeCccccChHHHHHHHHHHhhhCHHHH------HHHhCCCCC
Q psy13709 143 -------IKPEEAKKLAYENAKAIIACGFK--QDSTFIFSDIDFMNPSFYLNILKIQKLVNGTTV------KAIFGLKDF 207 (405)
Q Consensus 143 -------lt~e~i~~~~~~~~~~~~A~G~d--p~kt~i~~ns~~~~~~~~~~v~~l~~~~t~~~~------~~~~g~~~~ 207 (405)
++.+++++|+..+.+++. +|+| |+++.||+||+|+....+..++++++++|++++ +.|+..+++
T Consensus 89 k~~~R~~l~~e~i~~n~~~~~~ql~-~~ld~~p~k~~i~~nSd~~~~~~~~~~l~l~~~~tv~~ml~~~~~k~r~~~~~~ 167 (432)
T 1h3f_A 89 RSKTRPPLTLEETRENAKTYVAQAG-KILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLEREDFKKRYEAGIP 167 (432)
T ss_dssp -------------HHHHHHHHHHHT-TTSCCCTTTEEEEETHHHHTTCBHHHHHHHHTTSBHHHHTTSHHHHHHHHTTCC
T ss_pred cccccccCCHHHHHHHHHHHHHHHH-HHhcCCCCceEEEECCcccccCcHHHHHHHhCcCcHHHHHhhhhHHHHhhcCCC
Confidence 578999999877666654 7888 999999999999854456667777777777654 556655678
Q ss_pred CccccchhhhhhhcCCCcCchhhhhccCCCCCceeeecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCccCCC
Q psy13709 208 DSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSA 287 (405)
Q Consensus 208 ~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~lvp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSk 287 (405)
+|+|+|+||+|||||+++ +. .+++|||.|||+|+++|||+++|+|..+|+++++|+||+|+|. +||||
T Consensus 168 is~~ef~YPlLQaaDil~------l~-----~~l~~gG~DQ~~ni~l~rdlarr~~~~~~~~lt~pll~gldG~-~KMSK 235 (432)
T 1h3f_A 168 ISLHELLYPFAQAYDSVA------IR-----ADVEMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLDGR-EKMSK 235 (432)
T ss_dssp CBGGGGTHHHHHHHHHHH------HT-----CSEEEEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCCBCTTSS-SBCCG
T ss_pred CCccccchhhHHhhhhhh------cC-----ccEEEechHHHHHHHHHHHHHHHhCCCCceEeecccccCCCCc-cccCc
Confidence 999999999999999763 32 5788999999999999999999999989999999999999983 59999
Q ss_pred CCCCCceeccCCHHHHHHHhhcccccCCccchhhhhhcCCCCchHHHHHHHHhccC-ChhhHHHHHHHHhcCCCCHHHHH
Q psy13709 288 SDLNSAIFLTDTPKQVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLE-DDDKLEQIRKNYTSGALLTGELK 366 (405)
Q Consensus 288 S~~nsaI~L~D~p~~i~~KI~k~A~t~~~~t~e~~~~~ggn~~v~~~~~~l~~f~~-~d~e~eei~~~~~~G~l~~~elK 366 (405)
|.+| +|||+|+|+++++||++ +.+ +++++|+++|+. +.++++++.++ +|+++|
T Consensus 236 S~~n-~I~L~dsp~~i~~Ki~~-~~d------------------~~v~~~l~~ft~~~~eei~~~~~~------~~~~~K 289 (432)
T 1h3f_A 236 SLDN-YIGLTEPPEAMFKKLMR-VPD------------------PLLPSYFRLLTDLEEEEIEALLKA------GPVPAH 289 (432)
T ss_dssp GGTC-CCBTTSCHHHHHHHHHT-SCG------------------GGHHHHHHHHCCCCHHHHHHHHHH------CHHHHH
T ss_pred CCCC-eeCCCCCHHHHHHHHhC-CCc------------------cHHHHHHHHcCCCCHHHHHHHHhh------ChHHHH
Confidence 9988 99999999999999999 522 467899999964 55666666554 899999
Q ss_pred HHHHHHHHHhhH----HHHHHHHHhHH
Q psy13709 367 KILIDTITPIVT----QHQEAMKGVTE 389 (405)
Q Consensus 367 ~~La~~i~~~l~----~~qe~r~~~~~ 389 (405)
+.||++|++++| |+|+||+++++
T Consensus 290 ~~LA~~i~~~l~~~~~pirerr~~~~~ 316 (432)
T 1h3f_A 290 RVLARLLTAAYALPQIPPRIDRAFYES 316 (432)
T ss_dssp HHHHHHHHHHHHSSSCCSCCSHHHHHH
T ss_pred HHHHHHHHHHHhcccchHHHHHHHhhc
Confidence 999999999999 99999999984
No 33
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=100.00 E-value=7.9e-58 Score=466.56 Aligned_cols=288 Identities=17% Similarity=0.276 Sum_probs=245.4
Q ss_pred HHHHHHcCcccccCCHHHHHHHHhcCCCceeeeecCCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCccchhccC--
Q psy13709 65 VHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKN-- 142 (405)
Q Consensus 65 ~~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~~-- 142 (405)
...|++||++++|++.++|.+.++ ++++++|+||+|||+|||||||++++.++|||++|+ .++++|||+|+.+.+.
T Consensus 6 ~~~l~~Rg~~~~~~~~~~L~~~L~-~~~~~iy~G~dPTg~sLHlGh~v~l~~~~~lQ~~G~-~~~~lIgd~ta~igdp~g 83 (420)
T 1jil_A 6 IEDLKWRGLIYQQTDEQGIEDLLN-KEQVTLYCGADPTADSLHIGHLLPFLTLRRFQEHGH-RPIVLIGGGTGMIGDPSG 83 (420)
T ss_dssp HHHHHHTTCCCCBSCHHHHHHHHH-HSCCEEEEEECCSSSSCBHHHHHHHHHHHHHHHTTC-EEEEEECTTGGGTCCCTT
T ss_pred HHHHHHcCchhhcCCHHHHHHHHc-CCCCEEEEeeCCCCCCccHHHHHHHHHHHHHHHCCC-cEEEEEcCceeEecCCCc
Confidence 678999999999999998888886 778999999999998899999999999999999865 4566689999988642
Q ss_pred -------CCHHHHHHHHHHHHHHHHHcCCCC---CceEEeeCcccc-ChHHHHHHHHHHhhhCHHHH------HHHhCCC
Q psy13709 143 -------IKPEEAKKLAYENAKAIIACGFKQ---DSTFIFSDIDFM-NPSFYLNILKIQKLVNGTTV------KAIFGLK 205 (405)
Q Consensus 143 -------lt~e~i~~~~~~~~~~~~A~G~dp---~kt~i~~ns~~~-~~~~~~~v~~l~~~~t~~~~------~~~~g~~ 205 (405)
++.+++++|+.++.++++++ +|| +++.|++|++|+ ...++..+..+++++|++++ +.|+ .
T Consensus 84 k~~~R~~l~~e~i~~n~~~~~~~~~~~-ld~~~~~k~~i~~ns~w~~~~~~l~~l~~~~~~~tv~~m~~~~~~k~r~--~ 160 (420)
T 1jil_A 84 KSEERVLQTEEQVDKNIEGISKQMHNI-FEFGTDHGAVLVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRL--E 160 (420)
T ss_dssp CSSCCCCCCHHHHHHHHHHHHHHHHHH-SCCSSSSSCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTCGGGHHHH--T
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHH-hCCCCCCceEEEEchhhhhhccHHHHHHHHhccccHHHHhcchhhhhhc--c
Confidence 48999999999999999888 888 999999999998 33444444446666666665 4455 5
Q ss_pred CCCccccchhhhhhhcCCCcCchhhhhccCCCCCc-eeeecCCchHHHHHHHHHhhhh-CCCCceeeecccccCCCCCCc
Q psy13709 206 DFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPC-LIPCAIDQDPYFRLTRDVAPKL-GYVKPALIHSTFFPALQGANT 283 (405)
Q Consensus 206 ~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~-lvp~G~DQd~~~~l~rdla~r~-~~~kp~~l~~~~lp~L~G~~~ 283 (405)
+++|+|+|+||+|||||++ ++++ +++| ++|||+|||||+++|||+|+|+ |..+|+.+++|+||+|+| +
T Consensus 161 ~~is~~ef~YplLQaaD~l-----~l~~---~~~~~i~~gG~DQ~~ni~~grdla~r~~~~~~~~~l~~pll~~ldG--~ 230 (420)
T 1jil_A 161 HGISYTEFTYTILQAIDFG-----HLNR---ELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDG--K 230 (420)
T ss_dssp TTCCHHHHHHHHHHHHHHH-----HHHH---HHCEEEEEEEGGGHHHHHHHHHHHHHHHCCCCCEEEEECCCBCTTS--C
T ss_pred CCcchHHHHHHHHHHHHHH-----HHhc---cCCCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeEeecccccCCcc--c
Confidence 7899999999999999965 3443 1245 5568999999999999999999 998999999999999999 7
Q ss_pred cCCCCCCCCceeccC---CHHHHHHHhhcccccCCccchhhhhhcCCCCchHHHHHHHHhccC-ChhhHHHHHHHHhcCC
Q psy13709 284 KMSASDLNSAIFLTD---TPKQVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLE-DDDKLEQIRKNYTSGA 359 (405)
Q Consensus 284 KMSkS~~nsaI~L~D---~p~~i~~KI~k~A~t~~~~t~e~~~~~ggn~~v~~~~~~l~~f~~-~d~e~eei~~~~~~G~ 359 (405)
|||||.+| +|||+| +|+++++||++ + + | +.+++||++|+. +++++++|+++|.+|.
T Consensus 231 KMSKS~~n-aI~L~d~~tsp~~i~~ki~~-~-~----------------D-~~v~~~l~~~t~~~~~ei~~l~~~~~~g~ 290 (420)
T 1jil_A 231 KFGKSESG-AVWLDAEKTSPYEFYQFWIN-Q-S----------------D-EDVIKFLKYFTFLGKEEIDRLEQSKNEAP 290 (420)
T ss_dssp BTTBCSSS-BCBSSTTTSCHHHHHHHHHT-C-C----------------H-HHHHHHHHHHCCCCHHHHHHHHHHHHHCG
T ss_pred cccCCCCC-eEecCCCCCCHHHHHHHHhc-C-C----------------c-hhHHHHHHHHHcCCHHHHHHHHHHHhcCC
Confidence 99999987 999999 99999999999 3 1 1 446888888864 8899999999999996
Q ss_pred CCHHHHHHHHHHHHHHhhHHHHHHHHHhH
Q psy13709 360 LLTGELKKILIDTITPIVTQHQEAMKGVT 388 (405)
Q Consensus 360 l~~~elK~~La~~i~~~l~~~qe~r~~~~ 388 (405)
+++++|+.||++|++++|+.++.++...
T Consensus 291 -~~~~~K~~La~~v~~~~hg~~~~~~a~~ 318 (420)
T 1jil_A 291 -HLREAQKTLAEEVTKFIHGEDALNDAIR 318 (420)
T ss_dssp -GGCHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred -ChHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 9999999999999999999999876544
No 34
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-57 Score=461.54 Aligned_cols=305 Identities=20% Similarity=0.248 Sum_probs=241.5
Q ss_pred HHHHHHcCcccccCCHHHHHHHHhc-CCCceeeeecCCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCccchhcc-C
Q psy13709 65 VHHLLRRGIFFSHRDMHSILNLYEQ-GKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWK-N 142 (405)
Q Consensus 65 ~~~l~~RGl~~~~~d~~~ll~~~~~-~~~~~iytG~~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~-~ 142 (405)
.-.|++|| +..+.+.+.|.+.+++ ++|+++|+||+||| +|||||++++++..++|++ |+.++++|+|+|+++.+ .
T Consensus 12 ~~~l~~rg-~~e~~~~e~L~~~L~~~~~p~~vy~G~~PTG-~LHlG~~~~al~~~~~~q~-g~~~ii~I~D~ha~t~~~~ 88 (394)
T 2dlc_X 12 AFGLITKN-LQEVLNPQIIKDVLEVQKRHLKLYWGTAPTG-RPHCGYFVPMTKLADFLKA-GCEVTVLLADLHAFLDNMK 88 (394)
T ss_dssp HHHHHHTT-CSEEECHHHHHHHHHTSCSCCEEEEEECCCS-CCBGGGHHHHHHHHHHHHT-TCEEEEEECHHHHHHTTTS
T ss_pred HHHHHHcC-cceecCHHHHHHHHHccCCCeEEEEEeCCCC-CccHHHHHHHHHHHHHHHc-CCcEEEEEcCCccccCCCC
Confidence 45889999 6667778888888874 78899999999996 9999999999988888886 56788889999999875 3
Q ss_pred CCHHHHHHHHH----HHHHHHHHcCCCCCceEEeeCcccc-ChHHHHHHHHHHhhhCHHHHHHH----hCCCCCCccccc
Q psy13709 143 IKPEEAKKLAY----ENAKAIIACGFKQDSTFIFSDIDFM-NPSFYLNILKIQKLVNGTTVKAI----FGLKDFDSVGKF 213 (405)
Q Consensus 143 lt~e~i~~~~~----~~~~~~~A~G~dp~kt~i~~ns~~~-~~~~~~~v~~l~~~~t~~~~~~~----~g~~~~~s~g~~ 213 (405)
.+.+.++.++. ...+.++|||+||+++.||.||+|. ...++.+++.+++.+|++++++. .++.+++++|+|
T Consensus 89 ~~~e~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~r~~~~~~r~~~~~~~g~~ 168 (394)
T 2dlc_X 89 APLEVVNYRAKYYELTIKAILRSINVPIEKLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGADVVKQVANPLLSGL 168 (394)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHHHTTCCCTTCEEEETHHHHTSHHHHHHHHHHHTTSCHHHHHHHTTTTSCCCSSCCTHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHcCCChhHcEEEeCchhcchHHHHHHHHHHhCcCcHHHHhcccHhhhcccCCccceee
Confidence 56677776653 3334578999999999999999997 46777888899999999998864 233568899999
Q ss_pred hhhhhhhcCCCcCchhhhhccCCCCCceeeecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCCCCc
Q psy13709 214 SFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSA 293 (405)
Q Consensus 214 ~YpllQaaD~~~~~f~~l~~~~~~~~~lvp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsa 293 (405)
+||+|||||+++ ++ .+++|+|.||++|++++||+++|+|+++|..+++++||+|+| |+|||||.+|++
T Consensus 169 ~YP~lQaaD~l~------~~-----~~~v~~G~DQ~~~~~l~rdl~~r~~~~~p~~l~~pll~gl~~-G~KMSKS~~ns~ 236 (394)
T 2dlc_X 169 IYPLMQALDEQF------LD-----VDCQFGGVDQRKIFVLAEENLPSLGYKKRAHLMNPMVPGLAQ-GGKMSASDPNSK 236 (394)
T ss_dssp HHHHHHHHHHHH------TT-----CSEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCCCCC-----------CCS
T ss_pred echhHhhccHhh------hC-----CCEEecCccHHHHHHHHHHHHHHcCCCCCEEEecccccCCCC-CCcCCCCCCCCE
Confidence 999999999762 32 467889999999999999999999999999999999999992 389999999988
Q ss_pred eeccCCHHHHHHHhhcccccCCccc---------------hhhhhhcCCCCchHH--HHHHHHhccCChhhHHHHHHHHh
Q psy13709 294 IFLTDTPKQVKNKVNKHAYSGGQAT---------------VEEHRELGGNCDVDI--AYQYLTFFLEDDDKLEQIRKNYT 356 (405)
Q Consensus 294 I~L~D~p~~i~~KI~k~A~t~~~~t---------------~e~~~~~ggn~~v~~--~~~~l~~f~~~d~e~eei~~~~~ 356 (405)
|||+|+|++|++|||+ ||||++.+ ++++++.||+++..+ ..+|++++ +.+++++|+++|.
T Consensus 237 I~L~D~p~~i~kKI~k-a~Td~~~~~d~~v~~y~k~~~~p~~~~~~~~g~~~~~i~~~~~~~~~~--~~~~i~el~~~~~ 313 (394)
T 2dlc_X 237 IDLLEEPKQVKKKINS-AFCSPGNVEENGLLSFVQYVIAPIQELKFGTNHFEFFIDRPEKFGGPI--TYKSFEEMKLAFK 313 (394)
T ss_dssp CBTTCCHHHHHHHHHH-SCCCTTCCSSCHHHHHHHHTHHHHHHTSSSTTCCCEEECCCGGGSCCE--EESSHHHHHHHHH
T ss_pred EeccCCHHHHHHHHHH-hcCCCCCCCcchHHHHHHhhhcchhhhcccCCCceEEEeccccccCcC--CHHHHHHHHHHHh
Confidence 9999999999999999 99998543 122333333332110 01112222 4568999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhHHHHHHHHHh
Q psy13709 357 SGALLTGELKKILIDTITPIVTQHQEAMKGV 387 (405)
Q Consensus 357 ~G~l~~~elK~~La~~i~~~l~~~qe~r~~~ 387 (405)
+|+++|++||+.||++|+++++++|+++++-
T Consensus 314 ~g~~~~~~~K~~La~~i~~~l~p~r~~~~~~ 344 (394)
T 2dlc_X 314 EEKLSPPDLKIGVADAINELLEPIRQEFANN 344 (394)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHHHHHHHHHHhHHHHHHHCC
Confidence 9999999999999999999999999998843
No 35
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=100.00 E-value=3.9e-57 Score=457.52 Aligned_cols=291 Identities=16% Similarity=0.143 Sum_probs=240.4
Q ss_pred HHHHHHcCccccc-CCHHHHHHHHhcCCCceeeeecCCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCccchhccC-
Q psy13709 65 VHHLLRRGIFFSH-RDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKN- 142 (405)
Q Consensus 65 ~~~l~~RGl~~~~-~d~~~ll~~~~~~~~~~iytG~~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e~~l~~~- 142 (405)
...|.+||+++++ ++.+.|.+.++ ++++++|+||+|||.|||||||++++.++|||++|+ .++++|||+|+.+.+.
T Consensus 37 ~~~L~~Rg~~~~~~~~~e~l~~ll~-~~~~~vy~G~dPTg~sLHlGhlv~l~~l~~lQ~~G~-~~~~lIgD~haligdps 114 (392)
T 1y42_X 37 WDLFEERGYVKDTAGTKEHIAELMR-TRRIGAYVGIDPTAPSLHVGHLLPLMPLFWMYLEGY-KAFTLIGGSTAKIGDPT 114 (392)
T ss_dssp HHHHHHHTCCSCEESCHHHHHHHHH-HCCCEEEEEECCCSSSCBGGGHHHHHHHHHHHHHTC-EEEEEECTTTTTTCCCC
T ss_pred HHHHHHCCcHHhhcCCHHHHHHHHc-CCCCEEEEeecCCCCCccHHHHHHHHHHHHHHHcCC-cEEEEEcCceeEeCCCC
Confidence 6799999999955 47776655554 778999999999998899999999999999999864 5666789999988653
Q ss_pred --------CCHHHHHHHHHHHHHHHHHcC-----------CC---CCceEEeeCcccc-C---hHHHHHHH---HHHhhh
Q psy13709 143 --------IKPEEAKKLAYENAKAIIACG-----------FK---QDSTFIFSDIDFM-N---PSFYLNIL---KIQKLV 193 (405)
Q Consensus 143 --------lt~e~i~~~~~~~~~~~~A~G-----------~d---p~kt~i~~ns~~~-~---~~~~~~v~---~l~~~~ 193 (405)
++.+++++|+.++.++++|+| +| |+++.||+|++|+ . .++++.++ .+++|+
T Consensus 115 gk~~~R~~~~~e~i~~n~~~i~~~~~a~~~~~~~~~~~~g~d~~~p~ks~i~~ns~~~~~~~~l~~l~~ig~~~~v~rml 194 (392)
T 1y42_X 115 GRLKSRDHLSSSDATMNMTKIHYQLKKLWENVDTQMRARGYEADWARKRGIVNNNHWWNKQPMLEVLRRVGHALRIGPML 194 (392)
T ss_dssp C-----------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTCEEEEEETHHHHTTCCHHHHHHHHTTTCCHHHHH
T ss_pred CcchhhccCCHHHHHHHHHHHHHHHHHHhccccccccccccccCCCcccEEEEccHHHhhhhHHHHHHHHhccCcHHHHh
Confidence 578999999988877777654 55 6899999999997 2 45666666 678888
Q ss_pred CHHHHHHHhCCCCCCccccchhhhhhhcCCCcCchhhhhccCCCCC-ceeeecCCchHHHHHHHHHhhhhCC--------
Q psy13709 194 NGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVP-CLIPCAIDQDPYFRLTRDVAPKLGY-------- 264 (405)
Q Consensus 194 t~~~~~~~~g~~~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~-~lvp~G~DQd~~~~l~rdla~r~~~-------- 264 (405)
.+++++.+++..+++|+|+|+||+|||||++ ++++ +++ +++|||+|||||+++|||+|+|+|.
T Consensus 195 ~~~~~k~r~~~~~~is~gef~YPlLQAaDil-----~l~~---~~~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~ 266 (392)
T 1y42_X 195 SRDTVKNKMTQGDGVSFAEFTYPIMQGWDWF-----ELFY---QQGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQER 266 (392)
T ss_dssp SSHHHHHTTSSSSCCCHHHHHHHHHHHHHHH-----HHHH---HHCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred hhhHHHHHhcCCCCcccHHHHHHHHHHHHHH-----HHhc---cCCccEEecCcchHhHHHHHHHHHHHHhhhccccccc
Confidence 8888888887778999999999999999965 3442 123 4557999999999999999999853
Q ss_pred ---------CCceeeecccccCCCCCCccCCCCCCCCceeccC---CHHHHHHHhhcccccCCccchhhhhhcCCCCchH
Q psy13709 265 ---------VKPALIHSTFFPALQGANTKMSASDLNSAIFLTD---TPKQVKNKVNKHAYSGGQATVEEHRELGGNCDVD 332 (405)
Q Consensus 265 ---------~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D---~p~~i~~KI~k~A~t~~~~t~e~~~~~ggn~~v~ 332 (405)
.+|+.+++|+||+|+| +|||||.+| +|||+| +|+++++||++ + + +++
T Consensus 267 ~~~~p~l~~~~~~~l~~pll~~ldG--~KMSKS~~n-aI~L~d~~tsp~~i~qki~~-~-~--------------D~~-- 325 (392)
T 1y42_X 267 KYVTPKTALDECVGFTVPLLTDSSG--AKFGKSAGN-AIWLDPYQTSVFDFYGYFVR-R-S--------------DQE-- 325 (392)
T ss_dssp HHHSCCSGGGSCEEEECCCCBCTTC--CBTTBCSSS-BCBSSTTTSCHHHHHHHHHT-C-C--------------TTT--
T ss_pred cccccccccCCccccccccCcCCch--hhccCCCCC-eeeccCCCCCHHHHHHHHHc-C-C--------------chh--
Confidence 5788999999999999 799999876 999999 99999999999 3 2 222
Q ss_pred HHHHHHHhccC-ChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhH
Q psy13709 333 IAYQYLTFFLE-DDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQHQEAMKGVT 388 (405)
Q Consensus 333 ~~~~~l~~f~~-~d~e~eei~~~~~~G~l~~~elK~~La~~i~~~l~~~qe~r~~~~ 388 (405)
+++||++|+. +.+++++|+++|.+|. +++++|+.||++|++++|+.++.++...
T Consensus 326 -v~~~l~~ft~l~~~ei~~l~~~~~~g~-~~~~~K~~LA~~v~~~lhg~~~~~~a~~ 380 (392)
T 1y42_X 326 -VENLLKLFTFMPISEITKTMEEHIKDP-SKRVAQHTLAREVVTLVHGKQEASAAED 380 (392)
T ss_dssp -HHHHHHHHCCCCHHHHHHHHHHHHHCG-GGCHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred -HHHHHHHHHhCChhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 3778888864 7899999999999996 9999999999999999999999987655
No 36
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=4.5e-50 Score=430.32 Aligned_cols=266 Identities=14% Similarity=0.167 Sum_probs=225.8
Q ss_pred CCCceeeeecCCCCCCcchhhhHHHHH--HHHHHhcCCccEEEEecCccchhccC--CCHHHHHHHHHHHHHHHHHcCCC
Q psy13709 90 GKPFFLYTGRGPSSDSMHLGHLIPFMF--TKWLQDVFDVPLVIQLTDDEKSLWKN--IKPEEAKKLAYENAKAIIACGFK 165 (405)
Q Consensus 90 ~~~~~iytG~~PT~~slHlGhli~~~~--~~~lQ~~~~~~v~I~i~D~e~~l~~~--lt~e~i~~~~~~~~~~~~A~G~d 165 (405)
..|..++++- || ++|||||++|+++ .+|+|.++|++++|+|||+||+++++ .+++++++++.+++++|+|||+|
T Consensus 380 ~~~l~~~~~p-s~-g~lHLGh~v~~~k~l~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~~~~~alG~d 457 (690)
T 3p0j_A 380 AKPHACMWMP-AL-LKVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGLP 457 (690)
T ss_dssp SSCEEEEECC-CC-SSCBHHHHHHHHHHHHHHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCcceEEecC-CC-CCcccchHHHHHHHHHHHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 4567788766 55 6999999999987 55567778999999999999999986 78999999999999999999999
Q ss_pred CCceEEeeCccccC---hHHHHHHHHHHhhhCHHHHHHHhCCCCCCccccchhhhhhhcCCCcCchhhhhccCCCCCcee
Q psy13709 166 QDSTFIFSDIDFMN---PSFYLNILKIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLI 242 (405)
Q Consensus 166 p~kt~i~~ns~~~~---~~~~~~v~~l~~~~t~~~~~~~~g~~~~~s~g~~~YpllQaaD~~~~~f~~l~~~~~~~~~lv 242 (405)
+ ++.|+.||+|+. ..||.++++|++.+|++++++++| ++++++|+|.||+|||||+++ +. .+++
T Consensus 458 ~-k~~fv~~S~~~~~~~~~~~~~vi~la~~~tl~r~~~~~~-~~~~~i~~~~YPlmQaaDi~~------l~-----aDi~ 524 (690)
T 3p0j_A 458 S-SVKIVTENEVILGNCDDFWVSVIGIARKNLLSHVEELYG-GEVRNAGQVIAALMRVATALM------LS-----VSHV 524 (690)
T ss_dssp T-TSEEEEHHHHHHHTHHHHHHHHHHHHTTSCHHHHHHHTT-SCCSSHHHHHHHHHHHHHHHH------TT-----CSEE
T ss_pred c-CeEEEECCchhccchhhHHHHHHHHHHhhhHHHHHHHhC-CCCcchHHHHHHHHHHhhhhc------cC-----CCEE
Confidence 8 677777889982 379999999999999999999997 688999999999999999874 32 5789
Q ss_pred eecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCCCCceeccCCHHHHHHHhhcccccCCccchhhh
Q psy13709 243 PCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQATVEEH 322 (405)
Q Consensus 243 p~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~~~~t~e~~ 322 (405)
|||+||++|++|+||+++|++ +|+.++++++|+|+|++.+||||.++|+|+|+|+|++|++||++ |||+++ +
T Consensus 525 ~gG~DQ~~~~~LaRd~~~~~~--~~~~~~~~~~P~L~gp~~~~~~~s~~~~I~l~D~~~~i~~KI~k-A~c~p~--v--- 596 (690)
T 3p0j_A 525 ISTSLDGHINAFAREYTKERI--DCVQTLEGRIPALHRPGAAPAVLGADDVLYLDDNDMDIRRKIKK-AYSAPN--E--- 596 (690)
T ss_dssp EECSTTTTTTHHHHHHTTTCS--EEEECCCCSSCCSSCCCC-------CCSCBTTCCHHHHHHHHHH-SCCCTT--C---
T ss_pred ecccccHHHHHHHHHHHHhcc--CcccccccccccCCCcccccCCCCCCCeeeccCCHHHHHHHHHH-hcCCCC--C---
Confidence 999999999999999999954 78888999999999997777788888999999999999999999 999863 2
Q ss_pred hhcCCCCchHHHHHHHHhcc--------C---------ChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHH
Q psy13709 323 RELGGNCDVDIAYQYLTFFL--------E---------DDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQHQEAMK 385 (405)
Q Consensus 323 ~~~ggn~~v~~~~~~l~~f~--------~---------~d~e~eei~~~~~~G~l~~~elK~~La~~i~~~l~~~qe~r~ 385 (405)
.+|| +++|++++. + +.+++++|+++|.+|++||+|+|++|++.|+++|+|+|++++
T Consensus 597 ---e~np----~l~~~~~~~~~~~~~~i~r~~~~Gg~~~~~~~eel~~~y~~G~lhp~dlK~~la~~l~~~l~p~Re~~~ 669 (690)
T 3p0j_A 597 ---EANP----VISVAQHLLAQHGALSIERGEANGGNVSYNTPEALVADCGSGALHPADLKAAVLQLLLDRSAQARALLN 669 (690)
T ss_dssp ---SCSH----HHHHHHHHHHHHSCEEECCCTTTTCCEEESSHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCh----HHHHHHHHhccCCceEEechhhhCCCCCccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2444 455555541 0 136899999999999999999999999999999999999998
No 37
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=98.47 E-value=4.9e-07 Score=88.06 Aligned_cols=182 Identities=16% Similarity=0.197 Sum_probs=94.7
Q ss_pred eecCCC-CCCcchhhhHHHHHHHHH-HhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEeeC
Q psy13709 97 TGRGPS-SDSMHLGHLIPFMFTKWL-QDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSD 174 (405)
Q Consensus 97 tG~~PT-~~slHlGhli~~~~~~~l-Q~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~kt~i~~n 174 (405)
+=|.|| .|.|||||+..++ .+|+ .+..+..+++-|.|.... + ....+...+.+++.++|++++.. ++.+
T Consensus 8 ~RFAPsPtG~LHiG~~rtal-~n~l~Ar~~~g~~ilRieDtD~~--R-----~~~~~~~~I~~dL~~LGl~~D~~-~~~q 78 (298)
T 1nzj_A 8 GRFAPSPSGELHFGSLIAAL-GSYLQARARQGRWLVRIEDIDPP--R-----EVPGAAETILRQLEHYGLHWDGD-VLWQ 78 (298)
T ss_dssp EEECCCTTSCCCHHHHHHHH-HHHHHHHHTTCEEEEEECCSCGG--G-----SCTTHHHHHHHHHHHTTCCCSSC-CEEG
T ss_pred EEECcCCCCCccHHHHHHHH-HHHHHHHhcCCeEEEEEecCCch--h-----hHHHHHHHHHHHHHHcCCCCCCC-Ceee
Confidence 445444 2599999999986 5774 334556677778873211 1 12345567888899999998864 4556
Q ss_pred ccccChHHHHHH-HHHHh-------hhCHHHHHHH---h-CC-----CC-------------C-----Cccccchhhh-h
Q psy13709 175 IDFMNPSFYLNI-LKIQK-------LVNGTTVKAI---F-GL-----KD-------------F-----DSVGKFSFPA-I 218 (405)
Q Consensus 175 s~~~~~~~~~~v-~~l~~-------~~t~~~~~~~---~-g~-----~~-------------~-----~s~g~~~Ypl-l 218 (405)
|+.. +.|..+ -+|.. ..|.+++++. | |. .. . +-.|.+.++. .
T Consensus 79 Ser~--~~y~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~D~~~G~~~~~~~~ 156 (298)
T 1nzj_A 79 SQRH--DAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKL 156 (298)
T ss_dssp GGCH--HHHHHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEEEECCHHH
T ss_pred eCCH--HHHHHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCcccceehhhCcccccCccc
Confidence 6654 333332 22321 1344555431 1 00 00 0 1123333333 2
Q ss_pred hhcCCCcCchhhhhccCCCC---------------CceeeecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCc
Q psy13709 219 QAAPSFSSTFPLIFNKNHKV---------------PCLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANT 283 (405)
Q Consensus 219 QaaD~~~~~f~~l~~~~~~~---------------~~lvp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~ 283 (405)
+.-|.+ |.+.+ .. -+.|..|.|+..+-..-..+..-+|.+.|...|.+++.+.+| +
T Consensus 157 ~~~D~V------L~R~d-G~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~l~~alG~~~p~~~H~pll~~~~g--~ 227 (298)
T 1nzj_A 157 AREDFI------IHRRD-GLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQG--A 227 (298)
T ss_dssp HHSCCE------EECTT-SCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECBCCC------
T ss_pred CCCCEE------EECCC-CCEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHHHHHHcCCCCCeEEEeeeeECCCC--C
Confidence 344432 11110 01 133445999988776666777889999999889999988888 8
Q ss_pred cCCCCCCCCceeccC
Q psy13709 284 KMSASDLNSAIFLTD 298 (405)
Q Consensus 284 KMSkS~~nsaI~L~D 298 (405)
||||+.++.+|--.+
T Consensus 228 KLSKR~g~~~v~~~~ 242 (298)
T 1nzj_A 228 KLSKQNHAPALPKGD 242 (298)
T ss_dssp ---------CCCSSC
T ss_pred cccccCCccChhcCC
Confidence 999998875543333
No 38
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=98.36 E-value=1.5e-06 Score=89.52 Aligned_cols=188 Identities=11% Similarity=0.132 Sum_probs=113.2
Q ss_pred CCCCCCcchhhhHHHHHHHH-HHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHHHcCCCCCceE-------E
Q psy13709 100 GPSSDSMHLGHLIPFMFTKW-LQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTF-------I 171 (405)
Q Consensus 100 ~PT~~slHlGhli~~~~~~~-lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~kt~-------i 171 (405)
.|| |.|||||+...+ .+| +.++.|..+++-|-|.... + ....+...++.++..+|++++... .
T Consensus 9 sPt-G~LHiG~~rtal-~n~l~Ar~~~G~filRieDtD~~--R-----~~~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp 79 (468)
T 1j09_A 9 SPT-GDPHVGTAYIAL-FNYAWARRNGGRFIVRIEDTDRA--R-----YVPGAEERILAALKWLGLSYDEGPDVGGPHGP 79 (468)
T ss_dssp CCS-SSCBHHHHHHHH-HHHHHHHHTTCEEEECBCCCCTT--S-----CCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCC
T ss_pred CCC-CCccHHHHHHHH-HHHHHHHHcCCEEEEEeCcCCCc--c-----cChHHHHHHHHHHHHcCCCCCCCCCCCCCCCC
Confidence 356 599999999986 567 4444555566667663210 1 122344567788889999998753 3
Q ss_pred eeCccccChHHHHHH-HH----------------HH-------------hhhCHHHHHHHh--CC--------CC--CCc
Q psy13709 172 FSDIDFMNPSFYLNI-LK----------------IQ-------------KLVNGTTVKAIF--GL--------KD--FDS 209 (405)
Q Consensus 172 ~~ns~~~~~~~~~~v-~~----------------l~-------------~~~t~~~~~~~~--g~--------~~--~~s 209 (405)
+.||+.. +.|..+ -+ +. +..+.++...+. |. .. .++
T Consensus 80 ~~QS~r~--~~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~~~~~g~~~~~R~k~~~~~~~~ 157 (468)
T 1j09_A 80 YRQSERL--PLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTE 157 (468)
T ss_dssp CBGGGCH--HHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSCEEE
T ss_pred eeccCCH--HHHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHHHHhcCCCceEEEecCCCCceE
Confidence 6676764 222221 11 11 123333333322 11 00 111
Q ss_pred -----cccchhhhhhhcCCCcCchhhhhccCCCC---------------CceeeecCCchHHHHHHHHHhhhhCCCCcee
Q psy13709 210 -----VGKFSFPAIQAAPSFSSTFPLIFNKNHKV---------------PCLIPCAIDQDPYFRLTRDVAPKLGYVKPAL 269 (405)
Q Consensus 210 -----~g~~~YpllQaaD~~~~~f~~l~~~~~~~---------------~~lvp~G~DQd~~~~l~rdla~r~~~~kp~~ 269 (405)
.|++.++..+.-|.+ |++.+ .. -+.|..|.|+..+...-.-+.+.+|.+.|..
T Consensus 158 ~~D~~~G~~~~~~~~~~D~V------l~R~d-g~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~p~~ 230 (468)
T 1j09_A 158 VKDELRGVVVYDNQEIPDVV------LLKSD-GYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRF 230 (468)
T ss_dssp EEETTTEEEEEEGGGSCCCE------EECTT-SCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHTCCCCEE
T ss_pred EEeccceeEeecccCCCCeE------EEecC-CCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcCCCCCeE
Confidence 244666666655543 12211 01 1345569999999888888899999999988
Q ss_pred eecccccCCCCCCccCCCCCCCCceeccC------CHHHHHHHhhc
Q psy13709 270 IHSTFFPALQGANTKMSASDLNSAIFLTD------TPKQVKNKVNK 309 (405)
Q Consensus 270 l~~~~lp~L~G~~~KMSkS~~nsaI~L~D------~p~~i~~KI~k 309 (405)
.|.+++.+.+| +||||+.++.+ |.+ .|+.|.+-+..
T Consensus 231 ~h~~li~~~~g--~klSKR~g~~~--l~~~~~~G~~peal~~~l~~ 272 (468)
T 1j09_A 231 YHMPLLRNPDK--TKISKRKSHTS--LDWYKAEGFLPEALRNYLCL 272 (468)
T ss_dssp EEECCCBCTTS--CBCCTTTSCCB--HHHHHHTTCCHHHHHHHHHH
T ss_pred EEeeeeeCCCC--Cccccccchhh--HHHHHHCCCCHHHHHHHHHH
Confidence 88888888888 89999987743 332 67777776655
No 39
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=98.34 E-value=4.3e-06 Score=86.73 Aligned_cols=68 Identities=16% Similarity=0.082 Sum_probs=52.4
Q ss_pred ceeeecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCCCCcee-cc-C--CHHHHHHHhhc
Q psy13709 240 CLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIF-LT-D--TPKQVKNKVNK 309 (405)
Q Consensus 240 ~lvp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~-L~-D--~p~~i~~KI~k 309 (405)
+.|..|.|+..+-..-..+.+.+|.+.|...|.++|.+.+| +|||||.++.+|- +- . .|+.|++-+..
T Consensus 205 thviRG~D~~~~t~~q~~l~~alg~~~P~~~H~plil~~~g--~KLSKr~g~~~l~~~r~~G~~peal~~~l~~ 276 (492)
T 2cfo_A 205 TDVIRGEDHIGNTPKQILLYEALGATPPNFAHTPLILNSTG--QKLSKRDGVTSISDFRAMGYLAPALANYMTL 276 (492)
T ss_dssp SEEEEEGGGTTHHHHHHHHHHHTTCCCCEEEEECCEECSSS--SBCCTTSSCCBHHHHHHTTCCHHHHHHHHHH
T ss_pred CeEEEchhhhhCHHHHHHHHHHcCCCCceEEEeeeEECCCC--CEecccCCcccHHHHHHCCCCHHHHHHHHHH
Confidence 45557889988877777888999999998889999999998 8999998874331 11 1 57777776655
No 40
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=98.13 E-value=8.9e-06 Score=84.37 Aligned_cols=65 Identities=18% Similarity=0.067 Sum_probs=51.2
Q ss_pred eeeecCCchHHHHHHHHHhhhh-----CCCCceeeecccccCCCCCCccCCCCCCCCceeccC------CHHHHHHHhhc
Q psy13709 241 LIPCAIDQDPYFRLTRDVAPKL-----GYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTD------TPKQVKNKVNK 309 (405)
Q Consensus 241 lvp~G~DQd~~~~l~rdla~r~-----~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D------~p~~i~~KI~k 309 (405)
.|..|.|+..+...-+-+.+.+ |.+.|...|.+++.+.+| +||||+.++. .|.+ .|+.+.+-+..
T Consensus 211 hviRG~D~~~~t~~q~~l~~aL~~~g~g~~~P~~~h~plil~~~g--~KLSKR~g~~--~l~~~r~~G~~peAl~~~l~~ 286 (498)
T 2ja2_A 211 HVLRGEDLLPSTPRQLALHQALIRIGVAERIPKFAHLPTVLGEGT--KKLSKRDPQS--NLFAHRDRGFIPEGLLNYLAL 286 (498)
T ss_dssp EEEEEGGGGGGHHHHHHHHHHHHHTTSCCCCCEEEEECCEECSSS--SBCCTTSGGG--BHHHHHHHTCCHHHHHHHHHT
T ss_pred EEEEChhhhhccHHHHHHHHHHHhhcCCCCCCeEEEeeeeECCCC--CcccccCCcc--cHHHHHhCCCCHHHHHHHHHH
Confidence 3457999999988778888888 999998889999999888 8999998653 3333 57777766654
No 41
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=98.07 E-value=9.7e-06 Score=83.93 Aligned_cols=196 Identities=11% Similarity=0.157 Sum_probs=112.4
Q ss_pred eeeecCCC-CCCcchhhhHHHHHHHH-HHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHHHcCCCCCceE--
Q psy13709 95 LYTGRGPS-SDSMHLGHLIPFMFTKW-LQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTF-- 170 (405)
Q Consensus 95 iytG~~PT-~~slHlGhli~~~~~~~-lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~kt~-- 170 (405)
+-+=|.|| .|.|||||+...+ .+| +-++.+..+++-|-|... . .....+...+..++..+|++++...
T Consensus 26 v~~RFAPsPtG~LHiG~~rtal-~n~l~Ar~~~G~filRieDtD~----~---R~~~~~~~~I~~dL~wlGl~wDe~~~~ 97 (488)
T 3afh_A 26 VRVRFAPSPTGHLHVGGARTAL-FNWMFARKEGGKFILRIEDTDT----E---RSSREYEQQILESLRWCGLDWDEGPDI 97 (488)
T ss_dssp CEEEECCCCSSSCBHHHHHHHH-HHHHHHHHHTCEEEECBCCCCT----T---TCCHHHHHHHHHHHHHTTCCCSBBTTT
T ss_pred ceEEECCCCCCCccHHHHHHHH-HHHHHHHHcCCEEEEEEeeCCc----c---cccHHHHHHHHHHHHHcCCCCCcCCCC
Confidence 33445554 3599999999985 577 333445556666666321 1 1123444567788889999988742
Q ss_pred -----EeeCccccChHHHHHHH-HHHhh-------hCHHHHH-----------H--HhCC--------CC-CCc-----c
Q psy13709 171 -----IFSDIDFMNPSFYLNIL-KIQKL-------VNGTTVK-----------A--IFGL--------KD-FDS-----V 210 (405)
Q Consensus 171 -----i~~ns~~~~~~~~~~v~-~l~~~-------~t~~~~~-----------~--~~g~--------~~-~~s-----~ 210 (405)
.+.||+.. +.|..+. +|-.. .|.+++. . .-|. .+ .++ .
T Consensus 98 gG~~gp~~QSer~--~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~~~~~~~G~~~~iR~k~~~~~~~~~D~v~ 175 (488)
T 3afh_A 98 GGDFGPYRQSERL--EIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLK 175 (488)
T ss_dssp BCTTCCCBGGGCH--HHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHHHHHTTCCEEEEECCCSSEEEEEETTT
T ss_pred CCCCCCeeeeCCH--HHHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCchhhHHhcCCCceEEEECCCCceeEEeccc
Confidence 46666664 3343332 22111 1111111 0 1111 10 011 2
Q ss_pred ccchhhhhhhcCCC-------cCch------hhhhccCCCCCceeeecCCchHHHHHHHHHhhhhCCCCceeeecccccC
Q psy13709 211 GKFSFPAIQAAPSF-------SSTF------PLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPA 277 (405)
Q Consensus 211 g~~~YpllQaaD~~-------~~~f------~~l~~~~~~~~~lvp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~ 277 (405)
|.+.++.-+.-|.+ .+.+ .++.+ + +.|..|.|+..+--.-+-+.+.+|.+.|...|.+++.+
T Consensus 176 G~~~~~~~~~~D~Vl~R~DG~PtY~lA~vVDD~~mg----I-ThViRG~D~l~~tp~q~~l~~aLG~~~P~f~H~pli~~ 250 (488)
T 3afh_A 176 GYMEFDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMR----I-SHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILG 250 (488)
T ss_dssp EEEEEEGGGSCCEEEECTTSCBCHHHHHHHHHHHTT----C-SEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCEEC
T ss_pred eeEeecCCCCCCeEEEecCCCeehhhHHHHHHHhcC----C-CEEEEchhhhhCHHHHHHHHHHcCCCCCeEEEEeeeeC
Confidence 33444333332321 1100 11111 2 34557999999988888889999999999889999999
Q ss_pred CCCCCccCCCCCCCCceeccC------CHHHHHHHhhc
Q psy13709 278 LQGANTKMSASDLNSAIFLTD------TPKQVKNKVNK 309 (405)
Q Consensus 278 L~G~~~KMSkS~~nsaI~L~D------~p~~i~~KI~k 309 (405)
.+| +||||+.++. .|.+ .|+.|.+-+..
T Consensus 251 ~~g--~KLSKR~g~~--~l~~~r~~G~~peal~n~l~~ 284 (488)
T 3afh_A 251 SDR--TPLSKRHGAT--SVEHFRREGILSRALMNYLAL 284 (488)
T ss_dssp TTS--SBCCTTTSCC--BHHHHHHHTCCHHHHHHHHHH
T ss_pred CCC--CcccCcCCcc--cHHHHHHCCCCHHHHHHHHHH
Confidence 888 8999998763 3443 67777777755
No 42
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=97.99 E-value=1.3e-05 Score=84.85 Aligned_cols=192 Identities=11% Similarity=0.154 Sum_probs=111.0
Q ss_pred cCCCCCCcchhhhHHHHHHHH-HHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHHHcCCCCCceE-------
Q psy13709 99 RGPSSDSMHLGHLIPFMFTKW-LQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTF------- 170 (405)
Q Consensus 99 ~~PT~~slHlGhli~~~~~~~-lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~kt~------- 170 (405)
=-|| |.|||||+...+ .+| +.+..+..+++-|.|... .- .+..+...+..++..+|++++...
T Consensus 136 PsPT-G~LHiG~artAl-~n~l~Ar~~~G~~ilRieDtD~----~r---~~~~~~~~I~~dL~wlGl~~D~~~~~gG~~g 206 (592)
T 3al0_C 136 PSPT-GHLHVGGARTAL-FNWMFARKEGGKFILRIEDTDT----ER---SSREYEQQILESLRWCGLDWDEGPDIGGDFG 206 (592)
T ss_dssp CCSS-SCCBHHHHHHHH-HHHHHHHHHTCEEEECBCCCCS----SS---CCHHHHHHHHHHHHHTTCCCSBBTTTBCTTC
T ss_pred CCCC-CCccHHHHHHHH-HHHHHHHhcCCcEEEEecCcCh----hh---ccHHHHHHHHHHHHHcCCCCCCCCCcCCCCC
Confidence 3456 599999999985 466 444455666666776321 11 123344567788889999988642
Q ss_pred EeeCccccChHHHHHH-HHHHhh-hCH------HHH-------------HHHhC--------CC-CCCc-----cccchh
Q psy13709 171 IFSDIDFMNPSFYLNI-LKIQKL-VNG------TTV-------------KAIFG--------LK-DFDS-----VGKFSF 215 (405)
Q Consensus 171 i~~ns~~~~~~~~~~v-~~l~~~-~t~------~~~-------------~~~~g--------~~-~~~s-----~g~~~Y 215 (405)
++.||+.. +.|..+ -+|-.. ..+ +++ +..-| .. ..+. .|.+.+
T Consensus 207 p~~qSer~--~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~~~~ 284 (592)
T 3al0_C 207 PYRQSERL--EIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYMEF 284 (592)
T ss_dssp CCBSTTCH--HHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCHHHHHTTCCEEEEECCCSSCCEECCTTTCSEEC
T ss_pred CeeeeCCH--HHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHHHHhhcCCCceEEEECCCCCceeeecccceeee
Confidence 45666664 333333 222111 000 000 00111 11 0011 233443
Q ss_pred hhhhhcCC-------CcCch------hhhhccCCCCCceeeecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCC
Q psy13709 216 PAIQAAPS-------FSSTF------PLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGAN 282 (405)
Q Consensus 216 pllQaaD~-------~~~~f------~~l~~~~~~~~~lvp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~ 282 (405)
+.-+.-|. ..+.+ .++.+ + +.|..|.|+.++.-.-+-+.+.+|.+.|...|.+++.+.+|
T Consensus 285 ~~~~~~D~Vl~R~dg~ptY~~a~vvDD~~~g----i-thvirG~D~~~~t~~q~~l~~alg~~~P~~~hlpli~~~~g-- 357 (592)
T 3al0_C 285 DNSTLEDFIIMKSNGFPTYNFAVVVDDHLMR----I-SHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGSDR-- 357 (592)
T ss_dssp CSSSSCCEEEECTTSCCCHHHHHHHHHHHTT----C-SBCCEEGGGGGGHHHHHHHHTTTTCCCCBCCEECCCBCTTS--
T ss_pred ccccCCCeEEEcCCCCeehhhHHHHHHHhcC----C-CeEEEchhhHhCHHHHHHHHHHhCCCCCeEEEeeeeeCCCC--
Confidence 33332232 11100 11111 2 33447999999988888899999999998888899999888
Q ss_pred ccCCCCCCCCceeccC------CHHHHHHHhhcc
Q psy13709 283 TKMSASDLNSAIFLTD------TPKQVKNKVNKH 310 (405)
Q Consensus 283 ~KMSkS~~nsaI~L~D------~p~~i~~KI~k~ 310 (405)
+||||+.++. .|.+ .|+.|.+-+...
T Consensus 358 ~KLSKR~g~~--~l~~~~~~G~~peal~~~l~~l 389 (592)
T 3al0_C 358 TPLSKRHGAT--SVEHFRREGILSRALMNYLALL 389 (592)
T ss_dssp SBCCTTTCSS--BHHHHHHTTCCHHHHHHHHTTT
T ss_pred CcccccCCcc--cHHHHHHCCCCHHHHHHHHHHh
Confidence 8999998763 3433 688888777653
No 43
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=97.84 E-value=0.00041 Score=71.69 Aligned_cols=66 Identities=12% Similarity=0.059 Sum_probs=50.8
Q ss_pred ceeeecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCCCCceeccC------CHHHHHHHhhc
Q psy13709 240 CLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTD------TPKQVKNKVNK 309 (405)
Q Consensus 240 ~lvp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D------~p~~i~~KI~k 309 (405)
+.|..|.|+..+...-.-+.+.+|.+.|...|.+++...+| +||||+.++. .|.+ .|+.+.+-+..
T Consensus 220 thvirG~D~~~~t~~q~~l~~aLG~~~p~~~H~plil~~~G--~KLSKR~g~~--~l~~~~~~G~~peal~~~l~~ 291 (481)
T 2o5r_A 220 THVIRGDDHLSNTLRQLALYEAFEKAPPVFAHVSTILGPDG--KKLSKRHGAT--SVEAFRDMGYLPEALVNYLAL 291 (481)
T ss_dssp SEEEEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCEECTTS--SBCCGGGSCC--BHHHHHHHTCCHHHHHHHHHT
T ss_pred CeEEEChhHHHhHHHHHHHHHHcCCCCCeEEEEeeEECCCC--CcccCcCCcc--cHHHHHHCCCCHHHHHHHHHH
Confidence 34558999999988888888999999998888888777777 7999998764 3332 56666665544
No 44
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=97.53 E-value=0.0048 Score=63.71 Aligned_cols=68 Identities=19% Similarity=0.123 Sum_probs=49.0
Q ss_pred ceeeecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCCCCcee-cc---CCHHHHHHHhhc
Q psy13709 240 CLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIF-LT---DTPKQVKNKVNK 309 (405)
Q Consensus 240 ~lvp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~-L~---D~p~~i~~KI~k 309 (405)
+.|..|.|...+----.-+.+-||.+.|...|.|+|.+-+| +||||..+..+|- +- =.|+.|.+-+..
T Consensus 222 ThViRG~D~l~~tprq~~l~~aLG~~~P~f~HlpLi~~~~g--~KLSKR~g~~sl~~~r~~G~~peal~n~l~~ 293 (490)
T 4g6z_A 222 THVIRGDDHVNNTPRQINILRALGGEVPVYAHLPTVLNEQG--EKMSKRHGAMSVMGYRDAGYLPEAVLNYLAR 293 (490)
T ss_dssp CEEEEEGGGGGGHHHHHHHHHHTTCCCCEEEEECCEECTTS--SBCCTTTTCCBHHHHHHTTCCHHHHHHHHHT
T ss_pred CEEEeccccccChHHHHHHHHHcCCCCCeEEEecceeCCCC--CcccCCCCCcCHHHHHHCCCCHHHHHHHHHH
Confidence 34556877777655555677888999999889899888877 8999998653331 11 268888887755
No 45
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.11 E-value=0.0018 Score=67.67 Aligned_cols=74 Identities=16% Similarity=0.215 Sum_probs=50.6
Q ss_pred eeeecCCC-CCCcchhhhHHHHHHHH-HHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEe
Q psy13709 95 LYTGRGPS-SDSMHLGHLIPFMFTKW-LQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIF 172 (405)
Q Consensus 95 iytG~~PT-~~slHlGhli~~~~~~~-lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~G~dp~kt~i~ 172 (405)
+.|=|.|| .|.|||||+-.+++ +| +.+.++..+++-|.|.... + ....+...+..++.++|++++ .++
T Consensus 97 v~tRFaPsPtG~LHIGhaRtal~-n~l~Ar~~~G~~iLRieDtD~~--R-----~~~e~~~~I~edL~wLGl~wd--~~~ 166 (553)
T 3aii_A 97 VVLRFAPNPSGPLHIGHARAAIL-NHEYARKYDGRLILRIEDTDPR--R-----VDPEAYDMIPADLEWLGVEWD--ETV 166 (553)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHH-HHHHHHHTTCEEEEEECCCCGG--G-----CCTTHHHHHHHHHHHHTCCCS--EEE
T ss_pred eEEEeCCCCCCCccHHHHHHHHH-HHHHHHHcCCEEEEEECcCCcc--c-----ccHHHHHHHHHHHHHcCCCCC--CCc
Confidence 45666665 45999999999864 66 4556677777778774211 1 122445567788888999996 467
Q ss_pred eCcccc
Q psy13709 173 SDIDFM 178 (405)
Q Consensus 173 ~ns~~~ 178 (405)
.+|+.+
T Consensus 167 ~qSdr~ 172 (553)
T 3aii_A 167 IQSDRM 172 (553)
T ss_dssp EGGGGH
T ss_pred ccccCH
Confidence 777876
No 46
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=96.95 E-value=0.0017 Score=67.64 Aligned_cols=65 Identities=25% Similarity=0.342 Sum_probs=34.5
Q ss_pred eecCCchH---HHHHHHHHh-hhhCCCCceeeecccccCCCCCCccCCCCCCCCceeccC-----CHHHHHHHhhc
Q psy13709 243 PCAIDQDP---YFRLTRDVA-PKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTD-----TPKQVKNKVNK 309 (405)
Q Consensus 243 p~G~DQd~---~~~l~rdla-~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D-----~p~~i~~KI~k 309 (405)
.+|.|+-. .......++ .-+|.+.|..+|.+++.. .|.|+|||||.+| .|.+.+ .|+.++.-+..
T Consensus 235 ~~G~Dh~~~h~s~~~~~~i~~~alG~~~p~~~h~~~i~~-~g~g~KmSKs~Gn-~i~~~~~~~~~~pdalR~~l~~ 308 (523)
T 1irx_A 235 PAGKDHLVAGSSYDTGKEIIKEVYGKEAPLSLMYEFVGI-KGQKGKMSGSKGN-VILLSDLYEVLEPGLVRFIYAR 308 (523)
T ss_dssp CEEHHHHSTTSHHHHHHHHHHHHHCCCCCBCCEECCEEE-SCC---------C-CCCHHHHHTTSCHHHHHHHHHS
T ss_pred CCCcCccCCCcchhhHHHHHHHHhCCCCCeEEEEEEEEe-CCCCCCCCCcCCC-CCCHHHHHHHcCHHHHHHHHHh
Confidence 46777766 111234455 457887788778887766 3224899999988 665544 67777776655
No 47
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=96.58 E-value=0.028 Score=58.77 Aligned_cols=51 Identities=20% Similarity=0.186 Sum_probs=30.6
Q ss_pred ecCCchHHHHH-HHHHhhhhCCCCceee-ecccccCCCCCCccCCCCCCCCceeccC
Q psy13709 244 CAIDQDPYFRL-TRDVAPKLGYVKPALI-HSTFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 244 ~G~DQd~~~~l-~rdla~r~~~~kp~~l-~~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
+|.|+..+... =--+...+|++.|..+ .+.++.. +| +|||||.+| .|++.|
T Consensus 306 ~G~D~~~fh~~~~~a~l~~~g~~~p~~v~~hg~v~~-~G--~KMSKS~GN-vv~p~d 358 (560)
T 3h99_A 306 IGKDIVYFLSLFWPAMLEGSNFRKPSNLFVHGYVTV-NG--AKMSKSRGT-FIKAST 358 (560)
T ss_dssp EEGGGHHHHHTHHHHHHHHTTBCCCSEEEEECCEEE-TT--EECCTTTTC-CCBHHH
T ss_pred eccccchhHHHHHHHHHHhCCCCCCcEEEEEeEEEe-CC--eeccccCCC-cCCHHH
Confidence 69999884211 1112233566666333 3444443 66 899999988 787655
No 48
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=96.44 E-value=0.068 Score=55.56 Aligned_cols=53 Identities=19% Similarity=0.052 Sum_probs=22.0
Q ss_pred ceeeecCCchHHHH---HHHHHhhhhCCCCce-eeecccccCCCCCCccCCCCCCCCceeccC
Q psy13709 240 CLIPCAIDQDPYFR---LTRDVAPKLGYVKPA-LIHSTFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 240 ~lvp~G~DQd~~~~---l~rdla~r~~~~kp~-~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
++...|.||-.+.. .++=.+ +|.+.|. ++.+.++. ++| +|||||.+| .|++.|
T Consensus 278 dv~~~G~D~~~fh~~~~~a~l~a--~g~~~~~~v~~hg~v~-~~G--~KMSKS~GN-vi~p~d 334 (536)
T 4dlp_A 278 NAHIIGKDISRFHAVYWPAFLMS--AQLPLPKRVFAHGFLF-NRG--EKMSKSVGN-VIDPFE 334 (536)
T ss_dssp SEEEEEGGGHHHHHTHHHHHHHH--TTCCCCSCEEEECCEE-C---------------CCHHH
T ss_pred ceEEeechHHHHHHHHHHHHHHH--CCCCCCcEEEeeeeEe-eCC--ceecccCCC-CCCHHH
Confidence 45567999988421 122222 4655443 33456664 466 899999988 887654
No 49
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=96.38 E-value=0.14 Score=53.20 Aligned_cols=50 Identities=14% Similarity=0.027 Sum_probs=41.3
Q ss_pred ceeeecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCCC
Q psy13709 240 CLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLN 291 (405)
Q Consensus 240 ~lvp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~n 291 (405)
+.|..|.|...+--.-+-|.+-||.+.|.-.|.|++.+-+| +|+||..+.
T Consensus 231 THViRG~D~l~sTp~q~~l~~alg~~~P~y~H~pli~~~~g--~kLSKR~~~ 280 (512)
T 4gri_A 231 THVLRAQEWVSSGPLHVLLYKAFKWKPPIYCHLPMVMGNDG--QKLSKRHGS 280 (512)
T ss_dssp SEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCCBCTTS--SBCCTTTSC
T ss_pred ceeccccccccccHHHHHHHHHcCCCCCeEEecchhccccc--cccCccccc
Confidence 45667888877766666788889999999999999999888 899999754
No 50
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=95.34 E-value=0.036 Score=58.74 Aligned_cols=54 Identities=20% Similarity=0.268 Sum_probs=39.3
Q ss_pred ecCCchHHHHHHHHHhhhhCCCCc-eeeecccccCCCCCCccCCCCCCCCceeccCCHHHH
Q psy13709 244 CAIDQDPYFRLTRDVAPKLGYVKP-ALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQV 303 (405)
Q Consensus 244 ~G~DQd~~~~l~rdla~r~~~~kp-~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i 303 (405)
.|.||+.||.....+++.+|++.+ ...|..+ ++- .||||+.+| .|.|.|=-+++
T Consensus 371 ~g~~q~~~f~q~~~~~~~lG~~~~~~~~Hv~f--g~v---~kMSkR~G~-~v~L~dLlde~ 425 (607)
T 1f7u_A 371 IASQQDLHAAQFFEILKQMGFEWAKDLQHVNF--GMV---QGMSTRKGT-VVFLDNILEET 425 (607)
T ss_dssp CCGGGHHHHHHHHHHHHHTTCGGGGGEEEECC--CCE---ESCCGGGTC-CCBHHHHHHHH
T ss_pred EcChHhhHHHHHHHHHHHcCCCcCcEEEEecc--ccc---ccccCCCCC-cccHHHHHHHH
Confidence 688999999888899999998655 3445555 121 379999988 88887643333
No 51
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=95.24 E-value=0.011 Score=62.33 Aligned_cols=52 Identities=21% Similarity=0.175 Sum_probs=34.5
Q ss_pred eecCCchHHHHHHHHHhhhhCCCCc--eeeec--ccccCCCCCCccCCCCCCCCceeccC
Q psy13709 243 PCAIDQDPYFRLTRDVAPKLGYVKP--ALIHS--TFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 243 p~G~DQd~~~~l~rdla~r~~~~kp--~~l~~--~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
-.|.||..|+.....++..+|++.+ ...|. -++. +.| +|||||.+| .|.+.|
T Consensus 352 V~g~~h~~~~~~~~~~~~alG~~~~~~~~~H~~~g~v~-~~g--~KMSKr~Gn-~v~l~d 407 (592)
T 1iq0_A 352 VVDVRQSHPQALVRAALALAGYPALAEKAHHLAYETVL-LEG--RQMSGRKGL-AVSVDE 407 (592)
T ss_dssp EEESSSCCCHHHHHHHHHHTTCHHHHTTEEEEEECCEE-ETT--BCSCC-----CCBHHH
T ss_pred EEeccHHHHHHHHHHHHHHcCCCCCCCcEEEEEeeEEE-cCC--CcccCCCCC-ccCHHH
Confidence 3688999999988999999998542 23332 3453 355 899999988 887765
No 52
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=94.17 E-value=0.14 Score=53.40 Aligned_cols=92 Identities=13% Similarity=0.192 Sum_probs=57.2
Q ss_pred HHHhcCCCceeeeecCCC-CCCcchhhhHHHHHHHH-HHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHHHc
Q psy13709 85 NLYEQGKPFFLYTGRGPS-SDSMHLGHLIPFMFTKW-LQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIAC 162 (405)
Q Consensus 85 ~~~~~~~~~~iytG~~PT-~~slHlGhli~~~~~~~-lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A~ 162 (405)
+.+++|+.-.+.|=|.|| .|.|||||+-.+++ +| +.+.++..+++-|.|.... ....++...+..++..+
T Consensus 17 ~dl~~~~~~~v~tRFaPSPtG~LHIGhaRtal~-n~l~Ar~~gG~fiLRieDTD~~-------R~~~e~~~~I~edL~wL 88 (553)
T 1qtq_A 17 EDLASGKHTTVHTRFPPEPNGYLHIGHAKSICL-NFGIAQDYKGQCNLRFDDTNPV-------KEDIEYVESIKNDVEWL 88 (553)
T ss_dssp HHHHHTSCSSCEEEECCCTTSCCBHHHHHHHHH-HHHHHHHTTCEEEEEECCCCGG-------GCCHHHHHHHHHHHHHT
T ss_pred hHhhcCCcCceEEEeCCCCCCCccHHHHHHHHH-HHHHHHHcCCEEEEEECCCCch-------hcCHHHHHHHHHHHHHc
Confidence 355556544455656655 35999999999864 66 4555677777778774210 12234455677888899
Q ss_pred CCCCCceEEeeCccccChHHHHHH
Q psy13709 163 GFKQDSTFIFSDIDFMNPSFYLNI 186 (405)
Q Consensus 163 G~dp~kt~i~~ns~~~~~~~~~~v 186 (405)
|++++.. ++.+|+.+ ..++..+
T Consensus 89 Gl~wde~-~~~qSer~-~~~~~~a 110 (553)
T 1qtq_A 89 GFHWSGN-VRYSSDYF-DQLHAYA 110 (553)
T ss_dssp TCCCSSS-CEEGGGGH-HHHHHHH
T ss_pred CCCCCCC-CeehcccH-HHHHHHH
Confidence 9998532 46666765 3344443
No 53
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=93.55 E-value=0.27 Score=53.84 Aligned_cols=86 Identities=16% Similarity=0.223 Sum_probs=55.9
Q ss_pred HHHHhcCCCceeeeecCCC-CCCcchhhhHHHHHHHH-HHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHHHH
Q psy13709 84 LNLYEQGKPFFLYTGRGPS-SDSMHLGHLIPFMFTKW-LQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIA 161 (405)
Q Consensus 84 l~~~~~~~~~~iytG~~PT-~~slHlGhli~~~~~~~-lQ~~~~~~v~I~i~D~e~~l~~~lt~e~i~~~~~~~~~~~~A 161 (405)
.+.+++|+.-.+.|=|.|| .|.|||||+-.+++ +| +.+.++..+++-|.|... . .....+...+..++..
T Consensus 56 ~~dl~~g~~~~v~tRFaPSPtG~LHIGhARtAL~-n~l~Ar~~gG~fiLRIEDTD~----~---R~~~e~~~~IledL~w 127 (851)
T 2hz7_A 56 ERDLEAGKYPRVVTRFPPDPSGYAHLGHVFASLL-DFNTARQYGGQFNLRMDDTNP----E---LARQEYVDSIADDLKW 127 (851)
T ss_dssp HHHHHTTSCSSCEEEECCCSSSCCBHHHHHHHHH-HHHHHHHTTCEEEEEECCCCT----T---TCCHHHHHHHHHHHHH
T ss_pred HHHhhcCCcCceEEEeCCCCCCCccHHHHHHHHH-HHHHHHHcCCEEEEEECcCCc----c---cccHHHHHHHHHHHHH
Confidence 3456666544466655554 35999999999864 66 455567777777877421 1 1133455567788888
Q ss_pred cCCCCCceEEeeCcccc
Q psy13709 162 CGFKQDSTFIFSDIDFM 178 (405)
Q Consensus 162 ~G~dp~kt~i~~ns~~~ 178 (405)
+|++++. .++.+|+.+
T Consensus 128 LGl~wde-~~~~qSer~ 143 (851)
T 2hz7_A 128 LGLDWGE-HFYYASDYF 143 (851)
T ss_dssp HTCCCTT-CEEEGGGGH
T ss_pred cCCCCCC-CcccHhhhH
Confidence 9999854 356677775
No 54
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=93.42 E-value=0.032 Score=57.29 Aligned_cols=55 Identities=22% Similarity=0.280 Sum_probs=37.4
Q ss_pred eecCCchHHHHHHHHHhhhhCCCCce--eeecccccC-CCCCCccCCCCCCCCceeccC
Q psy13709 243 PCAIDQDPYFRLTRDVAPKLGYVKPA--LIHSTFFPA-LQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 243 p~G~DQd~~~~l~rdla~r~~~~kp~--~l~~~~lp~-L~G~~~KMSkS~~nsaI~L~D 298 (405)
-.|.||..|+.....+++.+|++++. +++..++.. -+|.+.|||||.+| .|++.|
T Consensus 241 v~G~dq~~~f~~l~~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn-~v~l~d 298 (464)
T 3fnr_A 241 IWGADHHGYIPRMKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGN-FILMSD 298 (464)
T ss_dssp EEEGGGGGGHHHHHHHHHTTTCCGGGEEEEEECCEEEEETTEECCC---CCS-SCBHHH
T ss_pred EecCcHHHHHHHHHHHHHHcCCCccceEEEEeeeEEecCCCcccCCcCcCCC-CCCHHH
Confidence 47999999998888899999987553 233445532 25534599999988 888866
No 55
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=91.71 E-value=0.1 Score=53.58 Aligned_cols=55 Identities=20% Similarity=0.178 Sum_probs=33.8
Q ss_pred ceeeecCCchHHH-HHHHHHhhhhCCCCce-eeecccccCCCCCCccCCCCCCCCceeccC
Q psy13709 240 CLIPCAIDQDPYF-RLTRDVAPKLGYVKPA-LIHSTFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 240 ~lvp~G~DQd~~~-~l~rdla~r~~~~kp~-~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
++..+|.||..+. ..-.-.+..+|.+.|. .+++.++.. +| +|||||.+| .|.+.|
T Consensus 252 di~~~G~D~~~~H~~~~~a~l~~~g~~~~~~~~~~G~v~~-~G--~KMSKS~GN-~i~~~d 308 (497)
T 2csx_A 252 DLHLVGKDILRFHTVYWPAFLMSLGYELPKKVFAHGWWTV-EG--KKMSKTLGN-VVDPYE 308 (497)
T ss_dssp SCEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEES-SS--SBCCTTTTC-CCCHHH
T ss_pred eEEEeecchhHhHHHHHHHHHHHcCCCCCcEEEECcEEEe-CC--ceeCCcCCC-CCCHHH
Confidence 4455899998732 1211122334665554 455666655 66 899999988 887654
No 56
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=91.24 E-value=0.13 Score=52.81 Aligned_cols=56 Identities=16% Similarity=-0.041 Sum_probs=35.0
Q ss_pred ceeeecCCchHHHH-HHHHHhhhhCCCCce-eeecccccCCCCCCccCCCCCCCCceeccC
Q psy13709 240 CLIPCAIDQDPYFR-LTRDVAPKLGYVKPA-LIHSTFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 240 ~lvp~G~DQd~~~~-l~rdla~r~~~~kp~-~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
++..+|.||-.+.. .-.-.+..+|.+.|. .+++.++..-+| +|||||.+| .|.+.|
T Consensus 253 di~~~G~D~~~fh~~~~~a~~~~~g~~~~~~v~~~G~v~~~~G--~KMSKS~GN-~i~p~d 310 (500)
T 2d5b_A 253 AWHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDG--RKMSKTLGN-VVDPFA 310 (500)
T ss_dssp EEEEEEGGGHHHHHTHHHHHHHHHTCCCCSEEEEECCEECTTS--SCCCTTTTC-CCCHHH
T ss_pred eEEEEeechhhhHHHHHHHHHHHcCCCCCcEEEECceEEeCCC--CcccccCCC-CCCHHH
Confidence 45568999988321 111122234665554 455677764466 899999998 887655
No 57
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=90.66 E-value=0.6 Score=48.24 Aligned_cols=79 Identities=20% Similarity=0.214 Sum_probs=46.2
Q ss_pred hcCCCceeeeec-CCCCCCcchhhhHHHH---HHHHHHhcCCccEEEEecCcc---chhc----cCCCHHH-HHHHHHHH
Q psy13709 88 EQGKPFFLYTGR-GPSSDSMHLGHLIPFM---FTKWLQDVFDVPLVIQLTDDE---KSLW----KNIKPEE-AKKLAYEN 155 (405)
Q Consensus 88 ~~~~~~~iytG~-~PT~~slHlGhli~~~---~~~~lQ~~~~~~v~I~i~D~e---~~l~----~~lt~e~-i~~~~~~~ 155 (405)
++.++|+|-|.+ =|+ |.|||||+.... ++.++++.-|..|..+-|.|+ +... .+++..+ +.++..++
T Consensus 6 ~~~k~f~Ittp~pY~n-G~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~ 84 (542)
T 3u1f_A 6 KVEKVFFVTSPIYYVN-AAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEF 84 (542)
T ss_dssp -CCCCEEEEEEEEECS-SCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCCCEEEeCCCCCCC-CchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 346677776663 466 599999988854 233444444455544444443 2111 2466544 45556677
Q ss_pred HHHHHHcCCCCC
Q psy13709 156 AKAIIACGFKQD 167 (405)
Q Consensus 156 ~~~~~A~G~dp~ 167 (405)
.+++.++|++.+
T Consensus 85 ~~~~~~lgi~~D 96 (542)
T 3u1f_A 85 KKCFEQMDYSID 96 (542)
T ss_dssp HHHHHHHTCCCS
T ss_pred HHHHHHhCCccC
Confidence 777888888764
No 58
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=88.86 E-value=0.2 Score=52.49 Aligned_cols=53 Identities=15% Similarity=0.068 Sum_probs=32.9
Q ss_pred ceeeecCCchHHHHH---HHHHhhhhCCCCce-eeecccccCCCCCCccCCCCCCCCceeccC
Q psy13709 240 CLIPCAIDQDPYFRL---TRDVAPKLGYVKPA-LIHSTFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 240 ~lvp~G~DQd~~~~l---~rdla~r~~~~kp~-~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
++...|.||-.+..+ ++=. -+|.+.|. ++.+.++ ...| +|||||.+| .|++.|
T Consensus 296 dv~~~GkDii~FH~~~wpa~L~--a~g~~~~~~v~~hg~v-~~~G--~KMSKS~GN-vV~p~d 352 (564)
T 3kfl_A 296 DVHVVGKDILKFHAIYWPAFLM--SAELPLPERLVSHGWW-TKDH--KKISKSLGN-AFDPVE 352 (564)
T ss_dssp SEEEEEGGGHHHHHTHHHHHHH--HTTCCCCSCEEEECCE-EETT--EECCTTTTC-CCCHHH
T ss_pred ceEEEeecccchHHHHHHHHHH--hCCCCCCcEEEEcccE-eeCC--ccccccCCC-CCCHHH
Confidence 345589999884221 1212 24665553 3345666 5666 899999988 887654
No 59
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=87.94 E-value=0.29 Score=53.56 Aligned_cols=56 Identities=27% Similarity=0.269 Sum_probs=33.1
Q ss_pred ceeeecCCchH-HHHHHHHHhhhh-CCCCc-eeeecccccCCCCCCccCCCCCCCCceeccC
Q psy13709 240 CLIPCAIDQDP-YFRLTRDVAPKL-GYVKP-ALIHSTFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 240 ~lvp~G~DQd~-~~~l~rdla~r~-~~~kp-~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
++...|.||-. |+........-+ +.+++ .++.+.++...+| +|||||.+| .|.+.|
T Consensus 546 dl~~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G--~KMSKS~GN-vV~p~d 604 (821)
T 1ile_A 546 DFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKG--QKMSKSKGN-VVDPWD 604 (821)
T ss_dssp SBEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTS--SCCCTTTTC-CCCHHH
T ss_pred ccccchhhhhccHHHHHHHHHHHhcCCCCcceEEEEeeEECCCC--CCCCccCCC-CCCHHH
Confidence 44557999963 443222222222 33332 3445677776777 899999998 776644
No 60
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=87.81 E-value=0.2 Score=51.76 Aligned_cols=55 Identities=18% Similarity=0.105 Sum_probs=32.3
Q ss_pred ceeeecCCchHHHHH-HHHHhhhhCCCCc-eeeecccccCCCCCCccCCCCCCCCceeccC
Q psy13709 240 CLIPCAIDQDPYFRL-TRDVAPKLGYVKP-ALIHSTFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 240 ~lvp~G~DQd~~~~l-~rdla~r~~~~kp-~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
++..+|.||-.+..+ -.-.+..+|.+.| ..+.+.++.. +| +|||||.+| .|++.|
T Consensus 267 di~~~G~D~~~fh~~~~~a~l~~~g~~~~~~v~~hG~v~~-~G--~KMSKS~GN-~v~p~d 323 (524)
T 2x1l_A 267 DLHMIGKDIIRFHTVYWPAFLMSAGLPLPKRIFAHGWLLN-RG--EKMSKSIGN-VVDPVN 323 (524)
T ss_dssp SEEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEEE-CS--CSEETTTEE-SSCHHH
T ss_pred eEEEEeechhHhHHHHHHHHHHHCCCCCCcEEEECcEEEe-CC--cccCCcCCC-CCCHHH
Confidence 455689999854221 1112233466544 2334455544 55 899999988 887755
No 61
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=86.79 E-value=0.32 Score=50.34 Aligned_cols=53 Identities=13% Similarity=0.054 Sum_probs=30.6
Q ss_pred ceeeecCCchHHHH---HHHHHhhhhCCCCce-eeecccccCCCCCCccCCCCCCCCceeccC
Q psy13709 240 CLIPCAIDQDPYFR---LTRDVAPKLGYVKPA-LIHSTFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 240 ~lvp~G~DQd~~~~---l~rdla~r~~~~kp~-~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
++...|.||-.+.. .++-++ .|.+.|- ++++.++. .+| +|||||.+| .|...|
T Consensus 280 d~~~~G~D~~~fh~~~~~a~l~~--~g~~~~~~v~~hg~l~-~~G--~KMSKSlGN-vi~p~~ 336 (542)
T 3u1f_A 280 DVHVIGKDILKFHAIYWPAFLLS--AGLPLPKKIVAHGWWT-KDR--KKISKSLGN-VFDPVE 336 (542)
T ss_dssp SEEEEEGGGHHHHHTHHHHHHHH--HTCCCCSCEEEECCCE-ETT--BCCBTTTTB-CCCHHH
T ss_pred eEEEecccccccccchhHHHHHh--hcccccceecccccee-cCC--ceeccccCC-CCChhH
Confidence 34457999977532 233333 2544443 33344443 355 999999988 776544
No 62
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=85.16 E-value=0.61 Score=51.69 Aligned_cols=55 Identities=29% Similarity=0.248 Sum_probs=33.4
Q ss_pred ceeeecCCchH-HH--HHHHHHhhhhCCCC-ceeeecccccCCCCCCccCCCCCCCCceeccC
Q psy13709 240 CLIPCAIDQDP-YF--RLTRDVAPKLGYVK-PALIHSTFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 240 ~lvp~G~DQd~-~~--~l~rdla~r~~~~k-p~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
++...|.||.. || .+...++ -.|..+ ..++.+.++...+| +|||||.+| .|...|
T Consensus 550 Dl~~~G~D~~r~wf~~~l~~s~~-~~g~~Pfk~v~~hG~V~d~~G--~KMSKSlGN-vV~P~d 608 (917)
T 1ffy_A 550 DMYLEGSDQYRGWFNSSITTSVA-TRGVSPYKFLLSHGFVMDGEG--KKMSKSLGN-VIVPDQ 608 (917)
T ss_dssp SEEEEEGGGGTTHHHHHHHHHHH-HHSSCSBSEEEEECCEECTTS--CCCCSSSSC-CCCHHH
T ss_pred eEEEEEecccccHHHHHHHHHHH-hhCCCcccceeEeeeEEcCCC--cCcccccCC-cCChHH
Confidence 55568999973 44 2334444 234322 22444567766666 899999998 776543
No 63
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=82.76 E-value=0.6 Score=46.85 Aligned_cols=73 Identities=18% Similarity=0.179 Sum_probs=40.1
Q ss_pred eeeeecCCCCCCcchhhhHHHH---H-HHHHHhcCCccEEEEecCccc-hh-c----cCCCHHHH-HHHHHHHHHHHHHc
Q psy13709 94 FLYTGRGPSSDSMHLGHLIPFM---F-TKWLQDVFDVPLVIQLTDDEK-SL-W----KNIKPEEA-KKLAYENAKAIIAC 162 (405)
Q Consensus 94 ~iytG~~PT~~slHlGhli~~~---~-~~~lQ~~~~~~v~I~i~D~e~-~l-~----~~lt~e~i-~~~~~~~~~~~~A~ 162 (405)
...||--|. +.+||||+.+.+ . .+++...|.....+.-.|++. .+ . .+.++.++ .++...+.+++.++
T Consensus 42 ~y~~gPt~y-g~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~~~~L 120 (414)
T 3c8z_A 42 MYVCGITPY-DATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAAL 120 (414)
T ss_dssp EEECCCCTT-SCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCCcCC-CCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 345555555 589999987754 2 344555544333443333321 11 1 14555444 44445677778889
Q ss_pred CCC-CC
Q psy13709 163 GFK-QD 167 (405)
Q Consensus 163 G~d-p~ 167 (405)
|+. ++
T Consensus 121 gi~~~d 126 (414)
T 3c8z_A 121 RVLPPH 126 (414)
T ss_dssp TCCCCS
T ss_pred CCCCCc
Confidence 987 54
No 64
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=81.18 E-value=0.47 Score=50.37 Aligned_cols=52 Identities=13% Similarity=0.079 Sum_probs=38.0
Q ss_pred ecCCchHHHHHHHHHhhhhCCCC-c-eeee--cccccCCCCCCccCCCCCC--CCceeccCC
Q psy13709 244 CAIDQDPYFRLTRDVAPKLGYVK-P-ALIH--STFFPALQGANTKMSASDL--NSAIFLTDT 299 (405)
Q Consensus 244 ~G~DQd~~~~l~rdla~r~~~~k-p-~~l~--~~~lp~L~G~~~KMSkS~~--nsaI~L~D~ 299 (405)
.|.||+.|+.....++..+|++. + ...| .-++. +.| +|||||.+ | .|.|.|=
T Consensus 383 ~g~~q~~~~~~l~~~l~~lG~~~~~~~~~h~~~g~V~-~~~--~KMSkr~G~~n-~v~l~dL 440 (629)
T 2zue_A 383 IGAEQKHPQLAIKYALQLLGFEDAAANLYHLAYEHVE-RPE--GKFSGRKGTWV-GFTVDEV 440 (629)
T ss_dssp EEGGGHHHHHHHHHHHHHTTCHHHHHTEEEEEECCEE-BTT--BCCCTTTTTTT-TCBHHHH
T ss_pred EeCcHhhHHHHHHHHHHHcCCCCCCCeEEEEEeeeEE-cCC--CcccCCCCCCC-eeeHHHH
Confidence 68899999988889999999854 2 2222 23443 344 89999998 8 8888663
No 65
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=80.09 E-value=0.81 Score=46.68 Aligned_cols=73 Identities=19% Similarity=0.154 Sum_probs=40.5
Q ss_pred ceee-eecCCCCCCcchhhhHHHH----HHHHHHhcCCccEEEE-ecCcc-chh----ccCCCHHHHH-HHHHHHHHHHH
Q psy13709 93 FFLY-TGRGPSSDSMHLGHLIPFM----FTKWLQDVFDVPLVIQ-LTDDE-KSL----WKNIKPEEAK-KLAYENAKAII 160 (405)
Q Consensus 93 ~~iy-tG~~PT~~slHlGhli~~~----~~~~lQ~~~~~~v~I~-i~D~e-~~l----~~~lt~e~i~-~~~~~~~~~~~ 160 (405)
+.+| ||--|. +.+||||+-+.+ +.++++..|.-..++. ++|.- +.+ ....++.++. ++..+..+++-
T Consensus 23 v~~yv~gPt~y-~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~~~ 101 (461)
T 1li5_A 23 VGMYVCGITVY-DLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFD 101 (461)
T ss_dssp EEEEECCCBSS-SCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred eeEEEcCCcCC-CCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4444 444444 489999987754 2344554443323332 56643 111 1245665544 44456777788
Q ss_pred HcCCCC
Q psy13709 161 ACGFKQ 166 (405)
Q Consensus 161 A~G~dp 166 (405)
++|+.+
T Consensus 102 ~LgI~~ 107 (461)
T 1li5_A 102 ALNILR 107 (461)
T ss_dssp HTTCCC
T ss_pred HcCCCC
Confidence 899875
No 66
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=79.93 E-value=8.7 Score=41.24 Aligned_cols=77 Identities=13% Similarity=0.160 Sum_probs=46.0
Q ss_pred CCceeeeec-CCCCCCcchhhhHH-HH---HHHHHHhcCCccEEEEec-Cccch------hccCCCHHHH-HHHHHHHHH
Q psy13709 91 KPFFLYTGR-GPSSDSMHLGHLIP-FM---FTKWLQDVFDVPLVIQLT-DDEKS------LWKNIKPEEA-KKLAYENAK 157 (405)
Q Consensus 91 ~~~~iytG~-~PT~~slHlGhli~-~~---~~~~lQ~~~~~~v~I~i~-D~e~~------l~~~lt~e~i-~~~~~~~~~ 157 (405)
++++|.++. -|+ |.+||||+.. .+ ++.++++.-|..|..+.| |.+.. ...++++.++ .++.....+
T Consensus 2 ~~~~itt~~Py~n-G~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~ 80 (722)
T 1rqg_A 2 VRYMVTSALPYAN-GPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKI 80 (722)
T ss_dssp CEEEEEECCCBTT-SCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCCC-CchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 356777776 445 5999999987 32 345555554555555445 43321 0124566444 445556777
Q ss_pred HHHHcCCCCCc
Q psy13709 158 AIIACGFKQDS 168 (405)
Q Consensus 158 ~~~A~G~dp~k 168 (405)
++.++|++.+.
T Consensus 81 ~~~~lgis~D~ 91 (722)
T 1rqg_A 81 TFQRAKISFDF 91 (722)
T ss_dssp HHHHHTCCCSE
T ss_pred HHHHhCCCCCC
Confidence 78889998764
No 67
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=79.79 E-value=0.96 Score=49.80 Aligned_cols=54 Identities=20% Similarity=0.211 Sum_probs=33.4
Q ss_pred ceeeecCCchHHHHHHHHHhhh---hCCCCc--eeeecccccCCCCCCccCCCCCCCCceeccC
Q psy13709 240 CLIPCAIDQDPYFRLTRDVAPK---LGYVKP--ALIHSTFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 240 ~lvp~G~DQd~~~~l~rdla~r---~~~~kp--~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
++...|.||..+. .+|-++.. +|. .| .++.+.++...+| +|||||.+| .|...|
T Consensus 483 d~~v~G~Dii~~W-~a~~~~~~~~~~g~-~Pfk~v~~hG~vld~~G--~KMSKSlGN-vIdP~d 541 (862)
T 1gax_A 483 DVLVTGYDILFLW-VSRMEVSGYHFMGE-RPFKTVLLHGLVLDEKG--QKMSKSKGN-VIDPLE 541 (862)
T ss_dssp SCEEEEGGGTTTT-HHHHHHHHHHHSSS-CSBSEEEEECCEECTTS--CBCCTTTTC-CCCHHH
T ss_pred eEEecCccccccH-HHHHHHHHHHhcCC-CcccEEEEeeeEEcCCC--CCccccCCC-CCCHHH
Confidence 3455799987532 23333322 233 34 3455677777777 899999998 776544
No 68
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=79.13 E-value=5.3 Score=40.59 Aligned_cols=64 Identities=17% Similarity=0.089 Sum_probs=35.8
Q ss_pred eeeecCCch-HHHH--HHHHHhhhhCCCCce-eeecccccCCCCCCccCCCCCCCCceeccC-----CHHHHHHHhhc
Q psy13709 241 LIPCAIDQD-PYFR--LTRDVAPKLGYVKPA-LIHSTFFPALQGANTKMSASDLNSAIFLTD-----TPKQVKNKVNK 309 (405)
Q Consensus 241 lvp~G~DQd-~~~~--l~rdla~r~~~~kp~-~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D-----~p~~i~~KI~k 309 (405)
+-.+|.|+- ||.. .+.-.+- +|.+.|- .+|+.++.. +| +|||||.+| .|++.| .++.++--+.+
T Consensus 223 ih~gG~Dl~fpH~~~~~aq~~a~-~g~~~~~~~~h~g~v~~-~G--~KMSKS~GN-~v~~~dll~~~g~dalR~~ll~ 295 (461)
T 1li5_A 223 IHGGGSDLMFPHHENEIAQSTCA-HDGQYVNYWMHSGMVMV-DR--EKMSKSLGN-FFTVRDVLKYYDAETVRYFLMS 295 (461)
T ss_dssp EEECBGGGTTTHHHHHHHHHHHH-SSSCCEEEECCBCCEEE-TT--BCCCGGGTC-CCBHHHHHTTSCHHHHHHHHHS
T ss_pred EEeccCccCchHHHHHHHHHHHh-cCCCCCcEEEEeeEEEE-CC--eEccccCCC-ccChhHHhhhCCHHHHHHHHHc
Confidence 334677755 4432 2222221 4654443 445566554 55 899999988 887754 55555544443
No 69
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=78.96 E-value=9 Score=38.89 Aligned_cols=74 Identities=18% Similarity=0.081 Sum_probs=40.6
Q ss_pred eeeeecC--CCCCCcchhhhHHHH---HHHHHHhcCCccEEEEec-Cccc-----h-hccCCCHHH-HHHHHHHHHHHHH
Q psy13709 94 FLYTGRG--PSSDSMHLGHLIPFM---FTKWLQDVFDVPLVIQLT-DDEK-----S-LWKNIKPEE-AKKLAYENAKAII 160 (405)
Q Consensus 94 ~iytG~~--PT~~slHlGhli~~~---~~~~lQ~~~~~~v~I~i~-D~e~-----~-l~~~lt~e~-i~~~~~~~~~~~~ 160 (405)
++.||-- ||| .+||||+...+ .+.++++..|..|..+.+ |.+. . ...+.++++ +.++...+.+++.
T Consensus 7 ~~i~~p~py~ng-~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 85 (497)
T 2csx_A 7 FYVTTPIYYVND-VPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLWE 85 (497)
T ss_dssp EEEEEEEEETTS-CCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCC-ccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4445544 555 89999988754 233344444444433322 3211 0 011345544 3445557778888
Q ss_pred HcCCCCCc
Q psy13709 161 ACGFKQDS 168 (405)
Q Consensus 161 A~G~dp~k 168 (405)
++|++++.
T Consensus 86 ~lgi~~d~ 93 (497)
T 2csx_A 86 FLKIEYTK 93 (497)
T ss_dssp HTTCCCSE
T ss_pred HhCCcCCC
Confidence 99998773
No 70
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=78.93 E-value=4.3 Score=41.39 Aligned_cols=76 Identities=17% Similarity=0.146 Sum_probs=43.5
Q ss_pred Ccee-eeecCCCCCCcchhhhHHHHH----HHHHHhcCCccEEEE-ecCcc-chhc----cCCCHHHH-HHHHHHHHHHH
Q psy13709 92 PFFL-YTGRGPSSDSMHLGHLIPFMF----TKWLQDVFDVPLVIQ-LTDDE-KSLW----KNIKPEEA-KKLAYENAKAI 159 (405)
Q Consensus 92 ~~~i-ytG~~PT~~slHlGhli~~~~----~~~lQ~~~~~~v~I~-i~D~e-~~l~----~~lt~e~i-~~~~~~~~~~~ 159 (405)
.+.+ +||--|. +.+||||+.+++. .+|++..|....++. ++|.. +-+. ...++.++ .++..++.+++
T Consensus 25 ~v~~YvcGPtvy-~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d~ 103 (462)
T 3tqo_A 25 KVKLYVCGMTVY-DYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHEDE 103 (462)
T ss_dssp EEEEEECCCBTT-SCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCcCC-CCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3444 4677777 5999999877642 344554443333333 44432 1111 14565444 45556777888
Q ss_pred HHcCCCCCc
Q psy13709 160 IACGFKQDS 168 (405)
Q Consensus 160 ~A~G~dp~k 168 (405)
.++|+.++.
T Consensus 104 ~~LgI~~d~ 112 (462)
T 3tqo_A 104 KALRVLSPD 112 (462)
T ss_dssp HHHTCCCCS
T ss_pred HHcCCCCCc
Confidence 889987653
No 71
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=78.68 E-value=17 Score=40.05 Aligned_cols=94 Identities=16% Similarity=0.209 Sum_probs=54.8
Q ss_pred HHHHHHcCcccccCCHHHHHHHHhcCCCceeeeec-CCCCCCcchhhhHHHHH---HHHHHhcCCccEEEEec-Cccc--
Q psy13709 65 VHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGR-GPSSDSMHLGHLIPFMF---TKWLQDVFDVPLVIQLT-DDEK-- 137 (405)
Q Consensus 65 ~~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~-~PT~~slHlGhli~~~~---~~~lQ~~~~~~v~I~i~-D~e~-- 137 (405)
.....+.|+|....+. .++++++++++ -|| |.|||||.....+ +.++++.-|..|....| |.+.
T Consensus 35 ~~~W~~~~~f~~~~~~--------~~~~~~v~~~~Pypn-G~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glp 105 (880)
T 4arc_A 35 QLHWDEKRTFEVTEDE--------SKEKYYCLSMLPYPS-GRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLP 105 (880)
T ss_dssp HHHHHHTTTTCCCCCT--------TSCEEEEEECCCCCC-SSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTH
T ss_pred HHHHHhcCCcccCCcC--------CCCCEEEEcCCCCCC-CCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcH
Confidence 3466777888765431 35678888887 344 5899999887643 34455544555444433 3321
Q ss_pred ----hhccCCCHHH-HHHHHHHHHHHHHHcCCCCC
Q psy13709 138 ----SLWKNIKPEE-AKKLAYENAKAIIACGFKQD 167 (405)
Q Consensus 138 ----~l~~~lt~e~-i~~~~~~~~~~~~A~G~dp~ 167 (405)
.....++..+ ..++...+.+++.++|+..+
T Consensus 106 ie~~a~~~g~~p~~~~~~~i~~~~~~l~~LGis~D 140 (880)
T 4arc_A 106 AEGAAVKNNTAPAPWTYDNIAYMKNQLKMLGFGYD 140 (880)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 1112344433 33445566677888998766
No 72
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=77.43 E-value=8.5 Score=39.63 Aligned_cols=74 Identities=14% Similarity=0.122 Sum_probs=40.7
Q ss_pred ceee-eecCCCCCCcchhhhHHHH---H-HHHHHhcCCccEEEE--ecCc-----------cchhcc----CCCHHH-HH
Q psy13709 93 FFLY-TGRGPSSDSMHLGHLIPFM---F-TKWLQDVFDVPLVIQ--LTDD-----------EKSLWK----NIKPEE-AK 149 (405)
Q Consensus 93 ~~iy-tG~~PT~~slHlGhli~~~---~-~~~lQ~~~~~~v~I~--i~D~-----------e~~l~~----~lt~e~-i~ 149 (405)
+.+| ||--|. +.+||||+.+.+ + .+|++-. |..|..+ |+|. .+.+.+ .+++.+ +.
T Consensus 43 v~~YvcgPTvY-g~~HIGHar~~v~~Dvl~R~lr~~-Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~ 120 (501)
T 3sp1_A 43 VKVYACGPTVY-NYAHIGNFRTYIFGDLLIKTLRFL-GYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISE 120 (501)
T ss_dssp EEEEECCCBCS-SCCCHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEBCSCCC-------------------CCHHHHHH
T ss_pred ceEEeCCCcCC-CCcchhhhHHHHHHHHHHHHHHHc-CCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHH
Confidence 4444 454444 589999987754 2 3445444 3444333 5554 122221 345544 45
Q ss_pred HHHHHHHHHHHHcCCCCCc
Q psy13709 150 KLAYENAKAIIACGFKQDS 168 (405)
Q Consensus 150 ~~~~~~~~~~~A~G~dp~k 168 (405)
++...+.+++.++|+.++.
T Consensus 121 ~~~~~f~~d~~~Lgi~~d~ 139 (501)
T 3sp1_A 121 FFTEAFFNDCRKLNIVYPD 139 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCS
T ss_pred HHHHHHHHHHHHcCCCCCC
Confidence 5666777888899997754
No 73
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=76.64 E-value=6 Score=40.18 Aligned_cols=73 Identities=16% Similarity=0.118 Sum_probs=39.7
Q ss_pred eeeeecCC--CCCCcchhhhHHHH---HHHHHHhcCCccEEEEec-Cccc-----h-hccCCCHHHH-HHHHHHHHHHHH
Q psy13709 94 FLYTGRGP--SSDSMHLGHLIPFM---FTKWLQDVFDVPLVIQLT-DDEK-----S-LWKNIKPEEA-KKLAYENAKAII 160 (405)
Q Consensus 94 ~iytG~~P--T~~slHlGhli~~~---~~~~lQ~~~~~~v~I~i~-D~e~-----~-l~~~lt~e~i-~~~~~~~~~~~~ 160 (405)
++.||--| + |.+||||+...+ .+.++++..|..|..+.+ |.+. . ...+.++.+. .++...+.+++.
T Consensus 5 ~~i~~p~py~~-g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 83 (500)
T 2d5b_A 5 FYVTTPIYYVN-AEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWD 83 (500)
T ss_dssp EEEECCCEETT-SCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCC-CCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 44555555 5 589999988754 233344444444444333 3211 0 0113455443 334456677788
Q ss_pred HcCCCCC
Q psy13709 161 ACGFKQD 167 (405)
Q Consensus 161 A~G~dp~ 167 (405)
++|++++
T Consensus 84 ~lgi~~d 90 (500)
T 2d5b_A 84 LLGIAYD 90 (500)
T ss_dssp HTTCCCS
T ss_pred HhCCcCC
Confidence 8999876
No 74
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=75.92 E-value=1.5 Score=47.68 Aligned_cols=55 Identities=20% Similarity=0.065 Sum_probs=30.1
Q ss_pred ceeeecCCchH-HHHHHHHHhhh-hCC-CCc-eeeecccccCCCCCCccCCCCCCCCceeccC
Q psy13709 240 CLIPCAIDQDP-YFRLTRDVAPK-LGY-VKP-ALIHSTFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 240 ~lvp~G~DQd~-~~~l~rdla~r-~~~-~kp-~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
++..+|.||-. |....+-...- ++. +-| ..+++.++.. +| +|||||.+| .|.+.|
T Consensus 605 Di~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~-~G--~KMSKS~GN-vv~p~d 663 (810)
T 1wkb_A 605 DWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EG--QKMSKSKGN-VLNFID 663 (810)
T ss_dssp SEEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEE-TT--BCCCTTTTC-CCBHHH
T ss_pred eEEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEe-CC--eehhhcCCC-cCCHHH
Confidence 45558999964 32222211111 121 112 3455555553 55 899999998 887654
No 75
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=75.68 E-value=1.7 Score=48.40 Aligned_cols=55 Identities=20% Similarity=0.070 Sum_probs=29.8
Q ss_pred ceeeecCCchHH-HHHHHHHhhh-hCC-CCc-eeeecccccCCCCCCccCCCCCCCCceeccC
Q psy13709 240 CLIPCAIDQDPY-FRLTRDVAPK-LGY-VKP-ALIHSTFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 240 ~lvp~G~DQd~~-~~l~rdla~r-~~~-~kp-~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
++..+|.||-.+ ....+-...- ++. +-| ..+++.++.. +| +|||||.+| .|.+.|
T Consensus 605 Di~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~-~G--~KMSKS~GN-vv~p~d 663 (967)
T 1wz2_A 605 DWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EG--QKMSKSKGN-VLNFID 663 (967)
T ss_dssp SEEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEE-SS--SCCCTTTCC-CCBHHH
T ss_pred eEEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEee-CC--EEccccccC-CCCHHH
Confidence 455689999542 2111111111 221 112 3455555554 66 899999998 777654
No 76
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=71.39 E-value=10 Score=37.75 Aligned_cols=54 Identities=20% Similarity=0.148 Sum_probs=19.6
Q ss_pred ceeeecCCchH-HHHHHHHHhhh-hCCCCce--eeecccccCCCCCCccCCCCCCCCceecc
Q psy13709 240 CLIPCAIDQDP-YFRLTRDVAPK-LGYVKPA--LIHSTFFPALQGANTKMSASDLNSAIFLT 297 (405)
Q Consensus 240 ~lvp~G~DQd~-~~~l~rdla~r-~~~~kp~--~l~~~~lp~L~G~~~KMSkS~~nsaI~L~ 297 (405)
++..+|.|+-. |.....-...- .|.+++. .+|+-++. ++| +|||||.+| .|++.
T Consensus 246 di~~~G~D~~~~H~~~~~a~~~a~~g~~~~~~~~~h~g~v~-~~G--~KMSKS~GN-~v~~~ 303 (414)
T 3c8z_A 246 DIQGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIG-WDG--HKMSKSRGN-LVLVS 303 (414)
T ss_dssp EEEEEEGGGTTTHHHHHHHHHHHHHCCSCSEEEEEEECCBC-----------------CBHH
T ss_pred eEEEeccccccHHHHHHHHHHHHhcCCCCcCeEEEEcCEEe-cCC--eEcccccCC-cCCHH
Confidence 34457889766 44332222222 2553332 33434554 366 899999988 77764
No 77
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=70.60 E-value=12 Score=38.70 Aligned_cols=77 Identities=17% Similarity=0.243 Sum_probs=42.0
Q ss_pred CCCceeeeec-CCCCCCcchhhhHHHHH----HHHHHhcCCccEEEEecCccch-h-----ccCCCHHHH-HHHHHHHHH
Q psy13709 90 GKPFFLYTGR-GPSSDSMHLGHLIPFMF----TKWLQDVFDVPLVIQLTDDEKS-L-----WKNIKPEEA-KKLAYENAK 157 (405)
Q Consensus 90 ~~~~~iytG~-~PT~~slHlGhli~~~~----~~~lQ~~~~~~v~I~i~D~e~~-l-----~~~lt~e~i-~~~~~~~~~ 157 (405)
++++++-+.. -||| .+||||+...+. .+++...|.-...+.-.|++.. + ....+++++ .++.....+
T Consensus 25 ~~~~~i~~~~py~ng-~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~~~ 103 (564)
T 3kfl_A 25 QKVFFATTPIYYVNA-SPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFKQ 103 (564)
T ss_dssp CCCEEEEEEEEECSS-CCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCEEEeCCCCCCCC-CCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4455443332 3665 899999877542 3444444444444443343321 1 124566554 444456667
Q ss_pred HHHHcCCCCC
Q psy13709 158 AIIACGFKQD 167 (405)
Q Consensus 158 ~~~A~G~dp~ 167 (405)
++.++|+..+
T Consensus 104 ~~~~lgi~~D 113 (564)
T 3kfl_A 104 CFQEMNYDMN 113 (564)
T ss_dssp HHHHTTCCCS
T ss_pred HHHHcCCCCC
Confidence 7788899876
No 78
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=70.01 E-value=7.7 Score=42.62 Aligned_cols=58 Identities=14% Similarity=0.209 Sum_probs=35.7
Q ss_pred HHHHHcCcccccCCHHHHHHHHhcCCCceeeeec-CCCCCCcchhhhHHHH---HHHHHHhcCCccEEEEec
Q psy13709 66 HHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGR-GPSSDSMHLGHLIPFM---FTKWLQDVFDVPLVIQLT 133 (405)
Q Consensus 66 ~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~-~PT~~slHlGhli~~~---~~~~lQ~~~~~~v~I~i~ 133 (405)
....+ |+|....+ ..+++|++++|. -|| |.||+||..... ++.++++.-|..+....|
T Consensus 18 ~~W~~-~~f~~~~~--------~~~~~f~i~~ppPy~n-G~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G 79 (862)
T 1gax_A 18 EKWAK-NPFVANPK--------SGKPPFVIFMPPPNVT-GSLHMGHALDNSLQDALIRYKRMRGFEAVWLPG 79 (862)
T ss_dssp HHHHH-SCCCCCTT--------CCSCEEEEECCCCBSS-SCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECE
T ss_pred HHHHh-CCCccCcC--------CCCCcEEEEcCCCCCC-CCcchhhhHHHHHHHHHHHHHHhCCCccccccc
Confidence 35566 78865432 235677888875 345 699999988753 334456654555555544
No 79
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=69.56 E-value=11 Score=41.33 Aligned_cols=93 Identities=12% Similarity=0.134 Sum_probs=48.7
Q ss_pred HHHHcCcccccC-CHHHHHHHHhcCCCceeeeecCCCCCCcchhhhHHHH---HHHHHHhcCCccEEEEec-Cccc----
Q psy13709 67 HLLRRGIFFSHR-DMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFM---FTKWLQDVFDVPLVIQLT-DDEK---- 137 (405)
Q Consensus 67 ~l~~RGl~~~~~-d~~~ll~~~~~~~~~~iytG~~PT~~slHlGhli~~~---~~~~lQ~~~~~~v~I~i~-D~e~---- 137 (405)
...+.|+|.... + .+++++++++|+=...|.|||||..... ++.++++.-|..|....| |.+.
T Consensus 16 ~W~~~~~f~~~~~~--------~~~~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie 87 (878)
T 2v0c_A 16 FWEEKGFMKAKDLP--------GGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAE 87 (878)
T ss_dssp HHHHHTTTCCCSCC--------C---EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHH
T ss_pred HHHHcCCcccCccc--------CCCCCEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHH
Confidence 455677776543 2 1244688888853334699999988754 233344433444444333 3221
Q ss_pred --hhccCCCHH-HHHHHHHHHHHHHHHcCCCCC
Q psy13709 138 --SLWKNIKPE-EAKKLAYENAKAIIACGFKQD 167 (405)
Q Consensus 138 --~l~~~lt~e-~i~~~~~~~~~~~~A~G~dp~ 167 (405)
....+++.. -+.++...+.+++.++|+..+
T Consensus 88 ~~a~k~g~~~~~~~~~~~~~~~~~~~~LGi~~D 120 (878)
T 2v0c_A 88 NAALKFGVHPKDWTYANIRQAKESLRLMGILYD 120 (878)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHhCCccC
Confidence 011134443 334455566677778886543
No 80
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=69.01 E-value=2.5 Score=43.09 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=17.1
Q ss_pred eecccccCCCCCCccCCCCCCCCceeccC
Q psy13709 270 IHSTFFPALQGANTKMSASDLNSAIFLTD 298 (405)
Q Consensus 270 l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 298 (405)
+|+-++ ..+| +|||||.+| .|.+.|
T Consensus 258 ~H~g~v-~~~G--~KMSKSlGN-~i~~~d 282 (462)
T 3tqo_A 258 MHAGLL-EINK--EKMSKSLGN-IISIRE 282 (462)
T ss_dssp EEECCE-EETT--EECCTTTTC-CCBHHH
T ss_pred EEccEE-ecCC--cCccccCCC-cccHHH
Confidence 344443 4577 899999988 666644
No 81
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=65.33 E-value=16 Score=37.22 Aligned_cols=64 Identities=11% Similarity=0.065 Sum_probs=35.1
Q ss_pred CCcchhhhHHHHH---HHHHHhcCCccEEEEec-Cccc-----hh-ccCCCHHHH-HHHHHHHHHHHHHcCCCCC
Q psy13709 104 DSMHLGHLIPFMF---TKWLQDVFDVPLVIQLT-DDEK-----SL-WKNIKPEEA-KKLAYENAKAIIACGFKQD 167 (405)
Q Consensus 104 ~slHlGhli~~~~---~~~lQ~~~~~~v~I~i~-D~e~-----~l-~~~lt~e~i-~~~~~~~~~~~~A~G~dp~ 167 (405)
|.+||||+...++ +.++++..|..|..+.+ |.+. .. ..+.++.++ .++..+..+++.++|+.++
T Consensus 25 g~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~d 99 (524)
T 2x1l_A 25 GVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEKLNISFD 99 (524)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTCCCS
T ss_pred CCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCC
Confidence 5899999887542 33344444444444323 3211 00 113455443 4455567777888998775
No 82
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=62.97 E-value=3.8 Score=42.25 Aligned_cols=53 Identities=19% Similarity=0.110 Sum_probs=19.2
Q ss_pred eeeecCCch-HHHHHHHHHhhhh-CCC-CceeeecccccCCCCCCccCCCCCCCCceecc
Q psy13709 241 LIPCAIDQD-PYFRLTRDVAPKL-GYV-KPALIHSTFFPALQGANTKMSASDLNSAIFLT 297 (405)
Q Consensus 241 lvp~G~DQd-~~~~l~rdla~r~-~~~-kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~ 297 (405)
+-.+|.|.. ||.+.-.-...-. +.+ ....+|+-++. ++| +|||||.+| .|.+.
T Consensus 256 IH~gG~DLifpHheneiAqs~a~~g~~~~~~w~H~g~v~-~~G--~KMSKSlGN-~it~~ 311 (501)
T 3sp1_A 256 IHLGGVDHIGVHHINEIAIAECFLNKKWCDVFVHGEFLI-MDY--NKMSKSRGN-FITVK 311 (501)
T ss_dssp EEEEEGGGTTTHHHHHHHHHHHHHTSCCCSEEEEECCEE-CC-------------CCCHH
T ss_pred EEeeccccccchHHHHHHHHHHccCCCCCeEEEEeeeEe-eCC--eEccccCCC-cCCHH
Confidence 334677754 4443322222222 222 22445656664 466 899999988 66553
No 83
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=62.08 E-value=5.1 Score=44.17 Aligned_cols=14 Identities=43% Similarity=0.183 Sum_probs=11.1
Q ss_pred cCCCCCCCCceeccC
Q psy13709 284 KMSASDLNSAIFLTD 298 (405)
Q Consensus 284 KMSkS~~nsaI~L~D 298 (405)
|||||.+| .|...|
T Consensus 639 KMSKSkGN-vVdP~d 652 (880)
T 4arc_A 639 KMSKSKNN-GIDPQV 652 (880)
T ss_dssp ECCTTTTC-CCCHHH
T ss_pred cccCcCCC-CCCHHH
Confidence 99999998 665544
No 84
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=60.99 E-value=3 Score=45.94 Aligned_cols=15 Identities=27% Similarity=0.275 Sum_probs=11.9
Q ss_pred ccCCCCCCCCceeccC
Q psy13709 283 TKMSASDLNSAIFLTD 298 (405)
Q Consensus 283 ~KMSkS~~nsaI~L~D 298 (405)
.|||||.+| .|...|
T Consensus 636 ~KMSKSkGN-vVdP~d 650 (878)
T 2v0c_A 636 AVMSKSKGN-GVMVGP 650 (878)
T ss_dssp EECSGGGTC-CCBHHH
T ss_pred HHhhccCCC-cccHHH
Confidence 699999998 776543
No 85
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=53.45 E-value=2.7 Score=45.25 Aligned_cols=41 Identities=17% Similarity=0.305 Sum_probs=26.6
Q ss_pred CCc-eeeecccccCCCCCCccCCCCCCCCceeccC-----CHHHHHHHhhc
Q psy13709 265 VKP-ALIHSTFFPALQGANTKMSASDLNSAIFLTD-----TPKQVKNKVNK 309 (405)
Q Consensus 265 ~kp-~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D-----~p~~i~~KI~k 309 (405)
+.| .++++.++.. +| +|||||.+| .|+..| .++.+|=-+..
T Consensus 327 ~~Pk~v~~hG~v~~-~G--~KMSKS~GN-vV~p~d~i~~ygaDalR~~ll~ 373 (722)
T 1rqg_A 327 NLPYDIPANEYLTL-EG--KKFSTSRNW-AIWVHEFLDVFPADYLRYYLTT 373 (722)
T ss_dssp CCCSBCCEECCEEE-TT--EECBTTTTB-SCBHHHHTTTSCHHHHHHHHHH
T ss_pred CCCCEEEEeeeEEe-CC--eeeeeeCCC-cCCHHHHHHhcCchHHHHHHHh
Confidence 344 3444566654 66 899999988 888754 55556555544
No 86
>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: PAF; 1.58A {Yersinia pestis} SCOP: c.26.1.4 PDB: 3q10_A* 3mue_A 1iho_A 3guz_A*
Probab=47.68 E-value=1.2e+02 Score=28.66 Aligned_cols=56 Identities=18% Similarity=0.264 Sum_probs=38.9
Q ss_pred CceeeecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCCCCceeccCCHH
Q psy13709 239 PCLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPK 301 (405)
Q Consensus 239 ~~lvp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~ 301 (405)
|+..-.|.--.|-+.+.|.+++.++++ ..++-.|++---+| ==||+= ..||++...
T Consensus 146 Pd~A~FGeKD~QQl~vIrrmV~DL~~p-v~Iv~~PtvRe~DG--LA~SSR----N~yLs~~eR 201 (287)
T 3q12_A 146 PDVACFGEKDYQQLALIRKMVADMGYD-INIVGVPTVRAKDG--LALSSR----NGYLTEEER 201 (287)
T ss_dssp CSEEEEETTSHHHHHHHHHHHHHHTCC-CEEEEECCCBCTTS--CBCCGG----GGGSCHHHH
T ss_pred CCeeEEchhHHHHHHHHHHHHHHcCCC-ceEEEeCceECCCC--Cchhhc----cccCCHHHH
Confidence 444446766777788889999999884 34455788888777 577754 567776543
No 87
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=45.42 E-value=11 Score=40.87 Aligned_cols=46 Identities=15% Similarity=0.113 Sum_probs=27.9
Q ss_pred cCCCceeeeec-CCCCCCcchhhhHHHH---HHHHHHhcCCccE-EEEecCc
Q psy13709 89 QGKPFFLYTGR-GPSSDSMHLGHLIPFM---FTKWLQDVFDVPL-VIQLTDD 135 (405)
Q Consensus 89 ~~~~~~iytG~-~PT~~slHlGhli~~~---~~~~lQ~~~~~~v-~I~i~D~ 135 (405)
.+++|+++.|. -|| |.|||||..... ++.++++.-|..| .+.=.|.
T Consensus 36 ~~~~f~i~~~pPy~n-G~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~ 86 (821)
T 1ile_A 36 GGPRYTVYEGPPTAN-GLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDT 86 (821)
T ss_dssp TSCBCCBCCCCCCTT-SCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECC
T ss_pred CCCcEEEecCCCCCC-CCCchhhhHhHHHHHHHHHHHHhcCCcccccccccC
Confidence 35678888888 566 589999988754 2333444434433 3333343
No 88
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=41.76 E-value=5.4 Score=40.51 Aligned_cols=15 Identities=7% Similarity=-0.077 Sum_probs=7.2
Q ss_pred CCceeeecCCchHHH
Q psy13709 238 VPCLIPCAIDQDPYF 252 (405)
Q Consensus 238 ~~~lvp~G~DQd~~~ 252 (405)
.+|+||+|+|||||.
T Consensus 233 ~~~~vp~~~d~~~~~ 247 (451)
T 3foc_A 233 PFTRVPLPVGTGNED 247 (451)
T ss_dssp GGGCCBCC-------
T ss_pred Cccccccccccccch
Confidence 589999999999995
No 89
>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3uy4_A*
Probab=38.86 E-value=1.7e+02 Score=27.75 Aligned_cols=62 Identities=10% Similarity=0.194 Sum_probs=41.6
Q ss_pred CceeeecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCCCCceeccCCHHHHHHHh
Q psy13709 239 PCLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKV 307 (405)
Q Consensus 239 ~~lvp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i~~KI 307 (405)
|+..-.|.--.|-+.+.|.+++.++++ -.++-.|++---+| ==||+= ..||++...+..-.|
T Consensus 143 Pd~A~FGeKD~QQl~vIrrmV~DL~~p-v~Iv~~PtvRe~DG--LA~SSR----N~yLs~~eR~~A~~L 204 (285)
T 3mxt_A 143 PDIVYMGQKDAQQCVVVRHMVDDLNFD-LKIQICPIIREEDG--LAKSSR----NVYLSKEERKASLAI 204 (285)
T ss_dssp CSEEEEEGGGHHHHHHHHHHHHHTTCS-SEEEEECCCBCTTS--CBCCGG----GGGCCHHHHHHHHHH
T ss_pred CCEeEEcchHHHHHHHHHHHHHHcCCC-ceEEEeCceECCCC--Cchhhc----cccCCHHHHHHHHHH
Confidence 444446766677778889999999884 34455788888777 577753 567776654443333
No 90
>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A
Probab=36.81 E-value=34 Score=28.11 Aligned_cols=31 Identities=19% Similarity=0.409 Sum_probs=25.8
Q ss_pred HHhhCCCCCCHHHHHHHHHHhhhhHHHHHHcC
Q psy13709 41 IKKFGSSKIDDELIARFEKVTNKKVHHLLRRG 72 (405)
Q Consensus 41 ~~~fg~~~i~~~~~~r~~~~~~~~~~~l~~RG 72 (405)
...||..||.+++.+||.+-..+ ...++.||
T Consensus 84 Y~s~g~~PlPek~k~Rl~~el~~-AE~al~rg 114 (115)
T 2kmf_A 84 YTSYGARPIPEKLKKRLQLEFTQ-AERSIERG 114 (115)
T ss_dssp HHHHSSCCCCHHHHHHHHHHHHH-HHHHHHHT
T ss_pred HhhcCCCCCCHHHHHHHHHHHHH-HHHHHHcc
Confidence 46799999999999999987665 67777777
No 91
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=34.41 E-value=54 Score=36.14 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=26.3
Q ss_pred CCCceeeeec-CCCCCCcchhhhHHHH---HHHHHHhcCCccEEEEec
Q psy13709 90 GKPFFLYTGR-GPSSDSMHLGHLIPFM---FTKWLQDVFDVPLVIQLT 133 (405)
Q Consensus 90 ~~~~~iytG~-~PT~~slHlGhli~~~---~~~~lQ~~~~~~v~I~i~ 133 (405)
+++|++.+|. -|| |.|||||.+... ++.++++.-|..+.-..|
T Consensus 47 ~~~f~i~~~pPY~n-G~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~G 93 (917)
T 1ffy_A 47 NETFILHDGPPYAN-GNLHMGHALNKILKDFIVRYKTMQGFYAPYVPG 93 (917)
T ss_dssp SCBCCEECCCCBSS-SCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCE
T ss_pred CCceeeCCCCCCCC-CcchHHHHHHHHHHHHHHHHHHhCCCCCCCccc
Confidence 4567888887 445 599999988754 234455544444333333
No 92
>2y6x_A PSB27, photosystem II 11 KD protein; photosynthesis; 1.60A {Thermosynechococcus elongatus}
Probab=32.43 E-value=31 Score=28.24 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=25.3
Q ss_pred HHhhCCCCCCHHHHHHHHHHhhhhHHHHHHcC
Q psy13709 41 IKKFGSSKIDDELIARFEKVTNKKVHHLLRRG 72 (405)
Q Consensus 41 ~~~fg~~~i~~~~~~r~~~~~~~~~~~l~~RG 72 (405)
...||..||.+.+.+||.+-..+ ...++.||
T Consensus 80 Y~s~g~~PlPek~k~Rl~~el~~-AE~al~Rg 110 (113)
T 2y6x_A 80 YSSYPNRPLPEKLKARLEQEFKQ-VELALDRE 110 (113)
T ss_dssp HHHCTTSCCCHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HhhcCCCCCCHHHHHHHHHHHHH-HHHHHHhc
Confidence 46799999999999999986665 66777776
No 93
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=32.16 E-value=48 Score=36.70 Aligned_cols=56 Identities=16% Similarity=0.238 Sum_probs=32.2
Q ss_pred HHHHHcCcccccCCHHHHHHHHhcCCCceeeeecCCCCCCcchhhhHHHH---HHHHHHhcCCcc
Q psy13709 66 HHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFM---FTKWLQDVFDVP 127 (405)
Q Consensus 66 ~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~PT~~slHlGhli~~~---~~~~lQ~~~~~~ 127 (405)
....+.++|....+ . -+.+++|+++.|.==..|.||+||.+... ++.++++.-|..
T Consensus 15 ~~W~~~~~f~~~~~-----~-~~~~~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~ 73 (967)
T 1wz2_A 15 KRWLEAKIFEPNIR-----D-KPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYN 73 (967)
T ss_dssp HHHHHHTTTSCCGG-----G-SCGGGCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCCcccCcc-----c-cCCCCcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCc
Confidence 35556777765432 0 01126788888873224699999988754 233455543433
No 94
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=31.87 E-value=35 Score=35.90 Aligned_cols=39 Identities=21% Similarity=0.282 Sum_probs=25.3
Q ss_pred eeeecCCCCCCcchhhhHHHHH----HHHHHhcCCccEEEE--ecCc
Q psy13709 95 LYTGRGPSSDSMHLGHLIPFMF----TKWLQDVFDVPLVIQ--LTDD 135 (405)
Q Consensus 95 iytG~~PT~~slHlGhli~~~~----~~~lQ~~~~~~v~I~--i~D~ 135 (405)
=|||--|++ .|||||+-..++ .++|.-.|. .|.-+ |+|+
T Consensus 124 e~~spN~~~-~~HiGH~Rs~iigD~laR~l~~~G~-~V~~~~~i~D~ 168 (629)
T 2zue_A 124 EHTSVNPTK-PLHMGHARNAILGDVMARILRFLGY-EVEVQNYIDDL 168 (629)
T ss_dssp ECCCCCTTS-CCBHHHHHHHHHHHHHHHHHHHTTC-EEEEEEEECTT
T ss_pred EeeCCCCCC-CCccchhHHHHHHHHHHHHHHHcCC-CceEEecccch
Confidence 367888884 899999877542 344555544 44443 7886
No 95
>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Thermotoga maritima}
Probab=31.64 E-value=1.2e+02 Score=28.57 Aligned_cols=53 Identities=19% Similarity=0.310 Sum_probs=35.9
Q ss_pred ecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCCCCceeccCCHHHH
Q psy13709 244 CAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQV 303 (405)
Q Consensus 244 ~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i 303 (405)
.|..-.|.+.+-+.+++.+|++- ..+-.+.+..-+| ..||++ .+||++...+.
T Consensus 146 FG~kd~qq~~~l~~~~~dl~~~v-~iv~vp~vr~~dG--laiSSr----n~yLs~~er~~ 198 (280)
T 2ejc_A 146 FGQKDAQQFRVLRRMVRDLNMDV-EMIECPIVREPDG--LAMSSR----NVYLSPEERQQ 198 (280)
T ss_dssp EEGGGHHHHHHHHHHHHHTTCCC-EEEEECCCBCTTS--CBCCGG----GGGCCHHHHHH
T ss_pred eCCCCCcCHHHHHHHHHHcCCeE-EEEeeCcEEcCCC--CEeccC----cccCCHHHHHH
Confidence 46566777888899999998842 2223455554456 799987 78888765433
No 96
>1v8f_A Pantoate-beta-alanine ligase; rossmann fold, dimer, structural genomics, riken STR genomics/proteomics initiative, RSGI; HET: P6G; 1.90A {Thermus thermophilus} SCOP: c.26.1.4 PDB: 1ufv_A
Probab=30.42 E-value=1.6e+02 Score=27.67 Aligned_cols=50 Identities=12% Similarity=0.230 Sum_probs=34.8
Q ss_pred ecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCCCCceeccCCH
Q psy13709 244 CAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTP 300 (405)
Q Consensus 244 ~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p 300 (405)
.|..-.|.+.+-+.+++.+|++ -..+-.+.+..-+| .+||++ .|+|++..
T Consensus 142 FG~kd~qq~~~l~~~~~dl~~~-v~iv~~p~vr~~dG--laiSSr----nirLs~~e 191 (276)
T 1v8f_A 142 FGEKDYQQLLVVRRMVRDLGFP-VEVVGVPTVREEDG--LALSSR----NVYLSPET 191 (276)
T ss_dssp EEGGGHHHHHHHHHHHHHHTCC-CEEEEECCCBCTTS--CBCCGG----GGGCCHHH
T ss_pred ECCCCCcCHHHHHHHHHHcCCe-EEEEecCcEEcCCC--CEeEEe----EEEeCHHH
Confidence 4656677788889999999984 22333455554455 799987 78888764
No 97
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=29.59 E-value=56 Score=35.28 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=25.8
Q ss_pred HHHHHcCcccccCCHHHHHHHHhcCCCceeeeecCCCCCCcchhhhHHHH
Q psy13709 66 HHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFM 115 (405)
Q Consensus 66 ~~l~~RGl~~~~~d~~~ll~~~~~~~~~~iytG~~PT~~slHlGhli~~~ 115 (405)
....+.++|....+. -+.++++++.+|.==..|.|||||+....
T Consensus 15 ~~W~~~~~f~~~~~~------~~~~~~~~i~~~~Py~nG~lHiGH~~~~~ 58 (810)
T 1wkb_A 15 KRWLEAKIFEPNIRD------KPKEKKFYITVAFPYLSGHLHVGHARTYT 58 (810)
T ss_dssp HHHHHTTTTCCCGGG------SCGGGEEEEEECCCBTTSCCBHHHHHHHH
T ss_pred HHHHhCCCcccCchh------cCCCCcEEEEeCCCCCCCCCccccchhHH
Confidence 355667887654320 01134566666653224689999988754
No 98
>3ag6_A Pantothenate synthetase; ATP-dependent enzyme, ATP-binding, nucleotide-binding, pantothenate biosynthesis; HET: PAJ PG4; 1.85A {Staphylococcus aureus} PDB: 3ag5_A* 2x3f_A*
Probab=29.38 E-value=2.3e+02 Score=26.69 Aligned_cols=53 Identities=11% Similarity=0.207 Sum_probs=35.4
Q ss_pred ecCCchHHHHHHHHHhhhhCCCCceeeecccccCCCCCCccCCCCCCCCceeccCCHHHH
Q psy13709 244 CAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQV 303 (405)
Q Consensus 244 ~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~p~~i 303 (405)
.|..-.|.+.+-|.+++.+|++- ..+-.|.+.--+| ..||++ .+||++...+.
T Consensus 147 FG~Kd~qql~~l~~m~~dl~~~V-~iv~vp~vr~~dG--laiSSr----n~yLs~~eR~~ 199 (283)
T 3ag6_A 147 FGKKDAQQLAIVEQMVKDFNHAV-EIIGIDIVREADG--LAKSSR----NVYLTEQERQE 199 (283)
T ss_dssp EEGGGHHHHHHHHHHHHHTTCCC-EEEEECCCBCTTS--CBCCGG----GGGCCHHHHHH
T ss_pred ECCCCccCHHHHHHHHHHcCCeE-EEEecCcEEeCCC--CEecCC----ccccCHHHHHH
Confidence 35566677788899999998842 2223455554455 799987 78888765433
No 99
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=27.15 E-value=61 Score=22.37 Aligned_cols=29 Identities=10% Similarity=0.392 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHhHHHHHhhh
Q psy13709 367 KILIDTITPIVTQHQEAMKGVTEEVLAQY 395 (405)
Q Consensus 367 ~~La~~i~~~l~~~qe~r~~~~~~~~~~~ 395 (405)
..|+..|..+|...|.|+..+.+..+.+-
T Consensus 5 ~dLt~~vq~LL~qmq~kFq~mS~~I~~ri 33 (48)
T 3ci9_A 5 QDLTSVVQTLLQQMQDKFQTISDQIIGRI 33 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788899999999999999998777654
No 100
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=22.37 E-value=75 Score=32.11 Aligned_cols=42 Identities=19% Similarity=0.375 Sum_probs=25.4
Q ss_pred eeeecCCCCCCcchhhhHHHHH---HHHHHhcCCccEEEE--ecCccc
Q psy13709 95 LYTGRGPSSDSMHLGHLIPFMF---TKWLQDVFDVPLVIQ--LTDDEK 137 (405)
Q Consensus 95 iytG~~PT~~slHlGhli~~~~---~~~lQ~~~~~~v~I~--i~D~e~ 137 (405)
=|+.--||+ .||+||+-...+ +..+.+..|-.|.-. |+|+=.
T Consensus 35 E~ss~n~~~-~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G~ 81 (464)
T 3fnr_A 35 EYVSANPTG-PLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGN 81 (464)
T ss_dssp ECCCCCSSS-SCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCHH
T ss_pred EeCCCCCCC-CCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCccH
Confidence 356777885 899999877543 333444334444332 888643
No 101
>3oqi_A YVMC, putative uncharacterized protein YVMC; tRNA, rossmann fold, ligase; HET: NHE; 1.70A {Bacillus licheniformis} PDB: 3oqh_A* 3oqj_A* 3s7t_A* 3oqi_B*
Probab=20.75 E-value=5.1e+02 Score=24.00 Aligned_cols=91 Identities=22% Similarity=0.288 Sum_probs=57.1
Q ss_pred cCCCceeeeecCCCCCCcchhhhHHHHHHHHHHhcCCccEEEEecCccc-hhc--cCCCHHHHHHHHH--------HHHH
Q psy13709 89 QGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEK-SLW--KNIKPEEAKKLAY--------ENAK 157 (405)
Q Consensus 89 ~~~~~~iytG~~PT~~slHlGhli~~~~~~~lQ~~~~~~v~I~i~D~e~-~l~--~~lt~e~i~~~~~--------~~~~ 157 (405)
+|+ .+..|+-|-. +-|=+-++-- ++.|.+..|+ .+.|+++|.+. .+. ...+..+.++.++ .+..
T Consensus 28 ~g~--HallGISpgN-syFs~d~L~~-Li~Wa~~~F~-~vdVli~D~~~~~~l~A~G~~~~~A~rKArre~~~~r~~i~r 102 (257)
T 3oqi_A 28 RRR--HVLVGISPFN-SRFSEDYIHR-LIAWAVREFQ-SVSVLLAGKEAANLLEALGTPHGKAERKVRKEVSRNRRFAEK 102 (257)
T ss_dssp HTC--EEEEEECTTS-TTCCHHHHHH-HHHHHHHHCS-EEEEEECCTTHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC--eEEEEeCCCC-cccCHHHHHH-HHHHHHccCC-ceEEEeCCHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Confidence 465 5899999984 8888888886 4689999885 47777899643 222 3456555554443 2233
Q ss_pred HHHHcCCCCCceEEeeCccccChHHHHHH
Q psy13709 158 AIIACGFKQDSTFIFSDIDFMNPSFYLNI 186 (405)
Q Consensus 158 ~~~A~G~dp~kt~i~~ns~~~~~~~~~~v 186 (405)
.+.++|.+.+. |..=+|+.....|+.+
T Consensus 103 al~~~g~~~~~--v~~~Sd~~~~~~Y~~l 129 (257)
T 3oqi_A 103 ALEAHGGNPED--IHTFSDFANQTAYRNL 129 (257)
T ss_dssp HHHHHTCCTTC--EEETTTTTTCHHHHHH
T ss_pred HHHHcCCCccc--ceeHHHhhcCHHHHHH
Confidence 34556887763 4443466533444444
Done!