RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13709
(405 letters)
>gnl|CDD|178104 PLN02486, PLN02486, aminoacyl-tRNA ligase.
Length = 383
Score = 613 bits (1583), Expect = 0.0
Identities = 236/381 (61%), Positives = 298/381 (78%)
Query: 21 VVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSHRDM 80
VV PW V++K +DYDKL+ KFG ++D LI R E++T + H LRRG+FF+HRD+
Sbjct: 2 VVTPWEVSAKDGGKIDYDKLVDKFGCQRLDPSLIDRVERLTGRPAHPFLRRGVFFAHRDL 61
Query: 81 HSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLW 140
IL+ YE+G+ F+LYTGRGPSS+++HLGHLIPFMFTK+LQD F VPLVIQLTDDEK LW
Sbjct: 62 EEILDAYEKGEKFYLYTGRGPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDDEKFLW 121
Query: 141 KNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPSFYLNILKIQKLVNGTTVKA 200
KN+ EE+++LA ENAK IIACGF + TFIFSD D++ +FY N++KI K V V+
Sbjct: 122 KNLSVEESQRLARENAKDIIACGFDVERTFIFSDFDYVGGAFYKNMVKIAKCVTLNQVRG 181
Query: 201 IFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAP 260
IFG D++GK SFPA+QAAPSF S+FP +F K+ CLIPCAIDQDPYFR+TRDVAP
Sbjct: 182 IFGFSGEDNIGKISFPAVQAAPSFPSSFPHLFGGKDKLRCLIPCAIDQDPYFRMTRDVAP 241
Query: 261 KLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQATVE 320
+LGY KPALI S FFPALQG + KMSASD NSAI++TDTPK++KNK+NK+A+SGGQ TVE
Sbjct: 242 RLGYYKPALIESRFFPALQGESGKMSASDPNSAIYVTDTPKEIKNKINKYAFSGGQDTVE 301
Query: 321 EHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQH 380
EHRELG N +VDI ++YL FFLEDD +LE+I+K Y SG +LTGE+KK LI+ +T IV +H
Sbjct: 302 EHRELGANLEVDIPWKYLNFFLEDDAELERIKKEYGSGRMLTGEVKKRLIEVLTEIVERH 361
Query: 381 QEAMKGVTEEVLAQYMTPRKL 401
Q A VT+E++ +M R L
Sbjct: 362 QRARAAVTDEMVDAFMAVRPL 382
>gnl|CDD|237037 PRK12285, PRK12285, tryptophanyl-tRNA synthetase; Reviewed.
Length = 368
Score = 387 bits (996), Expect = e-133
Identities = 146/380 (38%), Positives = 206/380 (54%), Gaps = 27/380 (7%)
Query: 17 GEDDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFS 76
++ +V PW V+ VDYDKL ++FG + L + H L+RRGI F
Sbjct: 1 EDEFMVTPWEVSGI----VDYDKLFEEFGIEPFTEVLPEL------PEPHPLMRRGIIFG 50
Query: 77 HRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDE 136
HRD IL Y GKPF +YTG PS MH+GH + F KW Q+ F + I + DDE
Sbjct: 51 HRDYDKILEAYRNGKPFAVYTGFMPSGP-MHIGHKMVFDELKWHQE-FGANVYIPIADDE 108
Query: 137 KSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPSFYLNILKIQKLVNGT 196
+ + EE ++ AYE +IA GF D T I+ + N Y ++ K VN +
Sbjct: 109 AYAARGLSWEETREWAYEYILDLIALGFDPDKTEIYFQSE--NIKVYDLAFELAKKVNFS 166
Query: 197 TVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTR 256
+KAI+G ++G +PA QAA P + + P L+P IDQDP+ RLTR
Sbjct: 167 ELKAIYGFTGETNIGHIFYPATQAADIL---HPQL--EEGPKPTLVPVGIDQDPHIRLTR 221
Query: 257 DVAPKL----GYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAY 312
D+A +L G++KP+ + F P L G KMS+S SAI+LTD P+ VK K+ A
Sbjct: 222 DIAERLHGGYGFIKPSSTYHKFMPGLTG--GKMSSSKPESAIYLTDDPETVKKKI-MKAL 278
Query: 313 SGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDK-LEQIRKNYTSGALLTGELKKILID 371
+GG+AT+EE R+LGG D + Y+ L + LE+DDK L++I + SG LL GE KK +
Sbjct: 279 TGGRATLEEQRKLGGEPDECVVYELLLYHLEEDDKELKEIYEECRSGELLCGECKKEAAE 338
Query: 372 TITPIVTQHQEAMKGVTEEV 391
I + +HQE + E +
Sbjct: 339 KIAEFLKEHQEKREEAREIL 358
>gnl|CDD|232888 TIGR00233, trpS, tryptophanyl-tRNA synthetase. This model
represents tryptophanyl-tRNA synthetase. Some members of
the family have a pfam00458 domain amino-terminal to the
region described by this model [Protein synthesis, tRNA
aminoacylation].
Length = 327
Score = 306 bits (785), Expect = e-102
Identities = 124/325 (38%), Positives = 165/325 (50%), Gaps = 29/325 (8%)
Query: 91 KPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKNIKPEEAKK 150
K F + TG PS MHLGH + + TKWLQ F V L I + D K P+ A +
Sbjct: 1 KKFRVLTGIQPSG-KMHLGHYLGAIQTKWLQ-QFGVELFICIADLHAITVKQTDPD-ALR 57
Query: 151 LAYEN-AKAIIACGFKQDSTFIFSDIDFMNPSFYLNILKIQKLVNGTTVKAIFGLKDFD- 208
A E A +A G + TFIF D+ P Y + V +K + KD
Sbjct: 58 KAREELAADYLAVGLDPEKTFIFLQSDY--PEHYELAWLLSCQVTFGELKRMTQFKDKSQ 115
Query: 209 ----SVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLG- 263
+G S+P +QAA L+ P IDQD + LTRD+A +
Sbjct: 116 AENVPIGLLSYPVLQAADILLYQADLV-----------PVGIDQDQHLELTRDLAERFNK 164
Query: 264 -----YVKPALIHSTFFPALQGANT-KMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQA 317
+ KP + S FFP L G + KMS SD NSAIFLTDTPKQ+K K+ K A GG+
Sbjct: 165 KFKNFFPKPESLISKFFPRLMGLSGKKMSKSDPNSAIFLTDTPKQIKKKIRKAATDGGRV 224
Query: 318 TVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPIV 377
T+ EHRE G ++ + YQYL+FFL DDDKL++I + Y SG L GE KK LI+ + +
Sbjct: 225 TLFEHREKPGVPNLLVIYQYLSFFLIDDDKLKEIYEAYKSGKLGYGECKKALIEVLQEFL 284
Query: 378 TQHQEAMKGVTEEVLAQYMTPRKLK 402
+ QE + EE+L + + P K
Sbjct: 285 KEIQERRAEIAEEILDKILEPGAKK 309
>gnl|CDD|173903 cd00806, TrpRS_core, catalytic core domain of tryptophanyl-tRNA
synthetase. Tryptophanyl-tRNA synthetase (TrpRS)
catalytic core domain. TrpRS is a homodimer which
attaches Tyr to the appropriate tRNA. TrpRS is a class I
tRNA synthetases, so it aminoacylates the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains class I characteristic
HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 280
Score = 299 bits (767), Expect = e-100
Identities = 101/298 (33%), Positives = 142/298 (47%), Gaps = 33/298 (11%)
Query: 94 FLYTGRGPSSDSMHLGHLIP-FMFTKWLQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLA 152
+ +G PS S+HLGH + F F WLQ+ L + D K + PEE ++
Sbjct: 1 RVLSGIQPSG-SLHLGHYLGAFRFWVWLQEA-GYELFFFIADLHALTVKQLDPEELRQNT 58
Query: 153 YENAKAIIACGFKQDSTFIFSDIDFMNPSFYLNILKIQKLVNGTTVKAIFGLKDF----- 207
ENAK +ACG + + IF P Y + +V ++ + G KD
Sbjct: 59 RENAKDYLACGLDPEKSTIF--FQSDVPEHYELAWLLSCVVTFGELERMTGFKDKSAQGE 116
Query: 208 -DSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLG--- 263
++G ++P +QAA CL+P IDQDP+ LTRD+A +
Sbjct: 117 SVNIGLLTYPVLQAADILLYKA-----------CLVPVGIDQDPHLELTRDIARRFNKLY 165
Query: 264 ---YVKPALIHS--TFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQAT 318
+ KPA + S F P LQG + KMS SD N+AIFLTD+PK++K K+ K A GG+
Sbjct: 166 GEIFPKPAALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTDSPKEIKKKIMKAATDGGRT- 224
Query: 319 VEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPI 376
EHR GG V + + F DDD+ + Y SG L GE KK+L + I
Sbjct: 225 --EHRRDGGGPGVSNLVEIYSAFFNDDDEELEEIDEYRSGGLGYGECKKLLAEAIQEF 280
>gnl|CDD|223258 COG0180, TrpS, Tryptophanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 314
Score = 249 bits (638), Expect = 2e-80
Identities = 87/319 (27%), Positives = 133/319 (41%), Gaps = 35/319 (10%)
Query: 88 EQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKNIKPEE 147
E K F + +G PS +HLG+ + + L + D + EE
Sbjct: 1 ENMKKFRVLSGIQPSGK-LHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEE 59
Query: 148 A-KKLAYENAKAIIACGFKQDSTFIFSDIDFMNPSFYLNILKIQKLVNGTTVKAIFGLKD 206
++ E A +A G + + IF + P + + N ++ + KD
Sbjct: 60 DLRQATREVAADYLAVGLDPEKSTIF--LQSEVPEHAELAWLLSCVTNFGELERMTQFKD 117
Query: 207 -------FDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVA 259
+G ++P +QAA L++ L+P DQD + LTRD+A
Sbjct: 118 KSAKKGESIPIGLLTYPVLQAADI------LLYQ-----ATLVPVGEDQDQHLELTRDIA 166
Query: 260 PKLG------YVKPALIHS--TFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHA 311
+ + P + S P L G KMS SD NSAIFL D PK ++ K+ K A
Sbjct: 167 RRFNHLYGEVFPLPEALISKVARLPGLDG-PGKMSKSDPNSAIFLLDDPKTIRKKIKKAA 225
Query: 312 YSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILID 371
G T+ E+R+ GG +V ++ + F EDD LE I Y G L GE KK L +
Sbjct: 226 TDG--PTLIEYRK-GGKPEVCNLFEIYSAFFEDDSILE-IEAEYRGGELGCGECKKELAE 281
Query: 372 TITPIVTQHQEAMKGVTEE 390
I + QE + + E+
Sbjct: 282 AIQEFLKPIQERREELRED 300
>gnl|CDD|216003 pfam00579, tRNA-synt_1b, tRNA synthetases class I (W and Y).
Length = 291
Score = 92.3 bits (230), Expect = 4e-21
Identities = 79/309 (25%), Positives = 126/309 (40%), Gaps = 48/309 (15%)
Query: 89 QGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVI------QLTDDEKSLWKN 142
+ +P +YTG P+ +HLG+L+P M Q + + D KS +
Sbjct: 2 KERPLRVYTGFDPTGP-LHLGYLVPLMKLVQFQQAGHEVFFLIGDLTAIIGDPSKSEERK 60
Query: 143 IKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPSFYLNILK----IQKLVNGTTV 198
+ E ENAKA +ACG + +N S +L L+ ++ L N ++
Sbjct: 61 LLSRE---EVLENAKAQLACGLD------PEKSEIVNNSDWLEHLELAWLLRDLGNHFSL 111
Query: 199 KAIFGLKDFD---------SVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQD 249
+ KD S+G+F++P +QAA L+ + L P DQ
Sbjct: 112 NRMLQFKDVKKRLKQNPGISLGEFTYPLLQAADI------LLLKAD-----LQPGGSDQW 160
Query: 250 PYFRLTRDVAPKLGYVKPALIHSTFFPALQGAN--TKMSASDLNSAIFLTDTPKQVKNKV 307
+ L RD+A + P L G + KMS S NSAIFL D + V K+
Sbjct: 161 GHIELGRDLARRFNKKVFKKPVGLTNPLLTGLDGGKKMSKSAGNSAIFLDDEKESVYKKI 220
Query: 308 NKHAYSGGQATVEEHRELGGNCDVDIA-YQYLTFFLEDDDK--LEQIRKNYTSGALLTGE 364
K AY+ E ++L ++ + L FL K E++ +G + G+
Sbjct: 221 QK-AYTDPDR--EVRKDLKLFTELSNEEIEILEAFLGKGPKREAEELLAREVTGLVHGGD 277
Query: 365 LKKILIDTI 373
LKK + +
Sbjct: 278 LKKAAAEAV 286
>gnl|CDD|236286 PRK08560, PRK08560, tyrosyl-tRNA synthetase; Validated.
Length = 329
Score = 90.3 bits (225), Expect = 3e-20
Identities = 93/327 (28%), Positives = 142/327 (43%), Gaps = 64/327 (19%)
Query: 83 ILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDV-FDVPLVIQLTD-----DE 136
+ L E + Y G PS +HLGHL+ LQ F V + L D ++
Sbjct: 21 LRELLESKEEPKAYIGFEPSGK-IHLGHLLTMNKLADLQKAGFKV--TVLLADWHAYLND 77
Query: 137 KSLWKNIKPEEAKKLAYENAKAIIACGFKQDST-FIF-SDIDFMNPSFYLNILKIQKLVN 194
K EE +K+A N K A G D T F+ S+ ++ ++L +LK+ K
Sbjct: 78 KGDL-----EEIRKVAEYNKKVFEALGLDPDKTEFVLGSEF-QLDKEYWLLVLKLAKN-- 129
Query: 195 GTTVK------AIFGLKDFDS-VGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAID 247
TT+ I G + + V K +P +Q A IF + + +D
Sbjct: 130 -TTLARARRSMTIMGRRMEEPDVSKLVYPLMQVAD--------IFYLDVDIAV---GGMD 177
Query: 248 QDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKV 307
Q L R+V PKLGY KP IH+ L G KMS S SAIF+ D+P++++ K+
Sbjct: 178 QRKIHMLAREVLPKLGYKKPVCIHTPLLTGLDGGGIKMSKSKPGSAIFVHDSPEEIRRKI 237
Query: 308 NKHAYSGGQATVEEHRELGGNCDVDIA-----YQYLTFFLEDDDK---------LEQIRK 353
K AY E+ GN ++IA +Y F +E +K E++ +
Sbjct: 238 KK-AYC-------PPGEVEGNPVLEIAKYHIFPRYDPFVIERPEKYGGDLEYESYEELER 289
Query: 354 NYTSGALLTGELK----KILIDTITPI 376
+Y G L +LK + LI+ + P+
Sbjct: 290 DYAEGKLHPMDLKNAVAEYLIEILEPV 316
>gnl|CDD|183400 PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed.
Length = 333
Score = 68.3 bits (168), Expect = 9e-13
Identities = 54/212 (25%), Positives = 89/212 (41%), Gaps = 35/212 (16%)
Query: 182 FYLNILKIQKLVNGTTVKAIFGLKDFDS---VGKFSFPAIQAAPSFSSTFPLIFNKNHKV 238
+Y+N++ + +L TVK K F G ++P QAA F
Sbjct: 94 YYMNLVTVARLERNPTVKTEIAQKGFGRSIPAGFLTYPVSQAADI------TAFKAT--- 144
Query: 239 PCLIPCAIDQDPYFRLTRDVAPKLG--YVKPALIH-------STFFPALQGANTKMSASD 289
L+P DQ P TR++ + Y L+ + P L G KMS S
Sbjct: 145 --LVPVGDDQLPMIEQTREIVRRFNSLYGTDVLVEPEALLPEAGRLPGLDG-KAKMSKS- 200
Query: 290 LNSAIFLTDTPKQVKNKVNKHAYSG-GQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKL 348
L +AI+L+D +K KV Y+ VE+ ++ GN + + YL F D ++
Sbjct: 201 LGNAIYLSDDADTIKKKV-MSMYTDPNHIRVEDPGKVEGN----VVFTYLDAFDPDKAEV 255
Query: 349 EQIRKNYTSGALLTGELKK----ILIDTITPI 376
+++ +Y G L + K+ +L + + PI
Sbjct: 256 AELKAHYQRGGLGDVKCKRYLEEVLQELLAPI 287
>gnl|CDD|223240 COG0162, TyrS, Tyrosyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 401
Score = 65.7 bits (161), Expect = 9e-12
Identities = 50/253 (19%), Positives = 85/253 (33%), Gaps = 55/253 (21%)
Query: 89 QGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDV-FDVPLVI-----QLTDDEKSLWKN 142
+ P +Y G P++ S+HLGHL+P M + QD ++I + D +
Sbjct: 29 EEGPLRVYIGFDPTAPSLHLGHLVPLMKLRRFQDAGHKPIVLIGDATAMIGD------PS 82
Query: 143 IKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPS-FYLN---ILKIQKLVNGTTV 198
K EE K L E KQ F+ + +F+N S + + ++ + +V
Sbjct: 83 GKSEERKLLTRETVLENAETIKKQLGKFLDNKAEFVNNSDWLKKLNYLDFLRDVGKHFSV 142
Query: 199 KAIFGLKDFDSVGK------------FSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAI 246
+ D V K F++P +QA NK+ +
Sbjct: 143 NR---MLRRDDVKKRLEREQGISFTEFNYPLLQAYDFV------YLNKD--------LQL 185
Query: 247 ---DQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGA-------NTKMSASDLNSAIFL 296
DQ RD+ +LG K + + L G S+ S
Sbjct: 186 GGSDQWGNILAGRDLIRRLGQKKVVGLTTPLLTGLDGKKMGKSEGGAVWLDSEKTSPYDF 245
Query: 297 TDTPKQVKNKVNK 309
+++ K
Sbjct: 246 YQYWMNIEDADVK 258
>gnl|CDD|234866 PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed.
Length = 333
Score = 64.3 bits (158), Expect = 2e-11
Identities = 49/208 (23%), Positives = 85/208 (40%), Gaps = 41/208 (19%)
Query: 209 SVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGYVKPA 268
S G F++P + AA L++ + +P DQ + LTRD+A +
Sbjct: 120 SAGLFTYPVLMAADI------LLYKADL-----VPVGEDQKQHLELTRDIARRFNN---- 164
Query: 269 LIHSTFFPA--------------LQGANTKMSASD--LNSAIFLTDTPKQVKNKVNKHAY 312
++ FP L G KMS SD N+ I L D PK + K+ K A
Sbjct: 165 -LYGEVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLDDPKTIAKKIKK-AV 222
Query: 313 SGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKIL--- 369
+ + E +L +V + + +E++ Y +G G+ KK L
Sbjct: 223 TDSERLREIRYDLPNKPEVSNLLTIYSALS--GESIEELEAEYEAGGKGYGDFKKDLAEA 280
Query: 370 -IDTITPIVTQHQEAM--KGVTEEVLAQ 394
++ + PI +++E + +E+LA+
Sbjct: 281 VVEFLAPIRERYEELLADPAYLDEILAE 308
>gnl|CDD|173902 cd00805, TyrRS_core, catalytic core domain of tyrosinyl-tRNA
synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic
core domain. TyrRS is a homodimer which attaches Tyr to
the appropriate tRNA. TyrRS is a class I tRNA
synthetases, so it aminoacylates the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formationof the enzyme bound
aminoacyl-adenylate. It contains the class I
characteristic HIGH and KMSKS motifs, which are involved
in ATP binding.
Length = 269
Score = 56.5 bits (137), Expect = 5e-09
Identities = 66/302 (21%), Positives = 115/302 (38%), Gaps = 59/302 (19%)
Query: 95 LYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTD-----DEKSLWKNIKPEEAK 149
+Y G P++ S+HLGHL+P M + Q +++ + D + S +
Sbjct: 3 VYIGFDPTAPSLHLGHLVPLMKLRDFQQ-AGHEVIVLIGDATAMIGDPSGKSEERKLLDL 61
Query: 150 KLAYENA-------KAIIACGFKQDSTFIFSDIDFMNPSFYLNILKIQKLVN------GT 196
+L ENA KAI+ + + F+ + D++ + L+ L++ K
Sbjct: 62 ELIRENAKYYKKQLKAILDFIPPEKAKFVNNS-DWLLSLYTLDFLRLGKHFTVNRMLRRD 120
Query: 197 TVKAIFGLKDFDSVGKFSFPAIQAAPSF--SSTFPLIFNKNHKVPCLIPCAIDQDPYFRL 254
VK ++ S +F +P +QA L DQ L
Sbjct: 121 AVKVRLEEEEGISFSEFIYPLLQAYDFVYLDVDLQL-------------GGSDQRGNITL 167
Query: 255 TRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSA-IFLTDTPKQVKNKVNKHAYS 313
RD+ KLGY K + + L G KMS S+ N+ + D+P V K+
Sbjct: 168 GRDLIRKLGYKKVVGLTTPLLTGLDGG--KMSKSEGNAIWDPVLDSPYDVYQKIR----- 220
Query: 314 GGQATVEEHRELGGNCDVDIAYQYLTFFLE-DDDKLEQIRKNYTSGALLTGELKKILIDT 372
N ++L F D +++E++ + + G L + KK L +
Sbjct: 221 --------------NAFDPDVLEFLKLFTFLDYEEIEELEEEHAEG-PLPRDAKKALAEE 265
Query: 373 IT 374
+T
Sbjct: 266 LT 267
>gnl|CDD|240282 PTZ00126, PTZ00126, tyrosyl-tRNA synthetase; Provisional.
Length = 383
Score = 49.3 bits (118), Expect = 2e-06
Identities = 65/237 (27%), Positives = 98/237 (41%), Gaps = 44/237 (18%)
Query: 161 ACGFKQDST-FIF-SDIDFMNPSFY-LNILKIQKLVNGTTVK---AIFGLKDFD--SVGK 212
A G D+ F++ S+ NP+ Y L ++ I + N T +K I G + D +
Sbjct: 136 AAGMDMDNVRFLWASEEINKNPNDYWLRVMDIARSFNITRIKRCSQIMGRSEGDEQPCAQ 195
Query: 213 FSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVA--PKLGYVKPALI 270
+P +Q A IF + L +DQ L R+ K+ KP ++
Sbjct: 196 ILYPCMQCAD--------IFYLKADICQL---GMDQRKVNMLAREYCDKKKIKK-KPIIL 243
Query: 271 HSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQATVEEHRELGGNCD 330
P L KMS SD NSAIF+ D+ + V K+ K AY V E GN
Sbjct: 244 SHHMLPGLLEGQEKMSKSDPNSAIFMEDSEEDVNRKI-KKAYC--PPGVIE-----GNPI 295
Query: 331 VD----IAYQYL-TFFLEDDDK---------LEQIRKNYTSGALLTGELKKILIDTI 373
+ I + +F + +K E++ K+Y SGAL G+LK L +
Sbjct: 296 LAYFKSIVFPAFNSFTVLRKEKNGGDVTYTTYEELEKDYLSGALHPGDLKPALAKYL 352
>gnl|CDD|232889 TIGR00234, tyrS, tyrosyl-tRNA synthetase. This tyrosyl-tRNA
synthetase model starts picking up tryptophanyl-tRNA
synthetases at scores of 0 and below. The proteins found
by this model have a deep split between two groups. One
group contains bacterial and organellar eukaryotic
examples. The other contains archaeal and cytosolic
eukaryotic examples [Protein synthesis, tRNA
aminoacylation].
Length = 377
Score = 47.0 bits (112), Expect = 9e-06
Identities = 57/278 (20%), Positives = 97/278 (34%), Gaps = 67/278 (24%)
Query: 89 QGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDV-FDVPLVI----------------- 130
+ LY G P++ S+HLGHL+P + + Q +V +++
Sbjct: 27 LERKIKLYVGFDPTAPSLHLGHLVPLLKLRDFQQAGHEVIVLLGDATALIGDPSGKSEER 86
Query: 131 -QLTDDEKSLW-KNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPSFYLNILK 188
LT +E +NIK + A+ L +E AK F +S + +++ I
Sbjct: 87 KLLTREEVQENAENIKKQIARFLDFEKAK------FVNNSEW-LLKLNY--------IDF 131
Query: 189 IQKLVNGTTVKAIFGLKDFD-------SVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCL 241
I+ L +V + F S+ +F +P +QA + N +
Sbjct: 132 IRDLGKIFSVNRMLRRDAFSSRLERGISLSEFIYPLLQAYDF------VYLNVD------ 179
Query: 242 IPCAI---DQDPYFR----LTRDVAPKLGYVKPALIHSTFFPALQG--ANTKMSASD--L 290
I DQ L R P LG+ + + G +S +
Sbjct: 180 --LQIGGSDQWGNILKGRDLIRRNLPSLGFGLTVPLLTPADGEKMGKSEGGAVSLDEGKY 237
Query: 291 NSAIFLTDTPKQVKNKVNKHAYSGGQATVEEHRELGGN 328
+ F +TP + K+ K G +E EL G
Sbjct: 238 DFYQFWINTPDEDVKKILKLFTFLGLEEIEALVELKGP 275
>gnl|CDD|237360 PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisional.
Length = 410
Score = 47.2 bits (113), Expect = 9e-06
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 89 QGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQD 122
+GKP LY G P++ S+H+GHL+P M K QD
Sbjct: 30 EGKPLTLYLGFDPTAPSLHIGHLVPLMKLKRFQD 63
>gnl|CDD|235645 PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.
Length = 408
Score = 42.4 bits (101), Expect = 3e-04
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 89 QGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQD 122
+P +Y G P++ S+HLGHL+P + + QD
Sbjct: 30 AKEPLRIYLGFDPTAPSLHLGHLVPLLKLRRFQD 63
>gnl|CDD|173541 PTZ00348, PTZ00348, tyrosyl-tRNA synthetase; Provisional.
Length = 682
Score = 39.9 bits (93), Expect = 0.002
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 246 IDQDPYFRLTRDVAPKLGY-VKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVK 304
+DQ L R+ +G +KP ++ L+ KMS SD +SAIF+ DT + V
Sbjct: 183 LDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMEDTEEDVA 242
Query: 305 NKVNKHAY 312
K+ + AY
Sbjct: 243 RKI-RQAY 249
>gnl|CDD|173893 cd00395, Tyr_Trp_RS_core, catalytic core domain of tyrosinyl-tRNA
and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA
synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS)
catalytic core domain. These enzymes attach Tyr or Trp,
respectively, to the appropriate tRNA. These class I
enzymes are homodimers, which aminoacylate the 2'-OH of
the nucleotide at the 3' of the appropriate tRNA. The
core domain is based on the Rossman fold and is
responsible for the ATP-dependent formation of the
enzyme bound aminoacyl-adenylate. It contains the class
I characteristic HIGH and KMSKS motifs, which are
involved in ATP binding.
Length = 273
Score = 37.7 bits (87), Expect = 0.008
Identities = 54/281 (19%), Positives = 94/281 (33%), Gaps = 56/281 (19%)
Query: 95 LYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYE 154
LY G P++DS+H+GHLI + + Q P+ + + K E E
Sbjct: 2 LYCGIDPTADSLHIGHLIGLLTFRRFQHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDPE 61
Query: 155 NAKAIIACGFKQDSTF----------IFSDIDFMNP----SF---YLNILKIQKLVNGTT 197
+ I Q +F++ D+ P F + + + T+
Sbjct: 62 EVRQNIRRIAAQYLAVGIFEDPTQATLFNNSDWPGPLAHIQFLRDLGKHVYVNYMERKTS 121
Query: 198 VKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPC-LIPCAIDQDPYFRLTR 256
++ ++ S +F++P +QAA N C + P DQ L R
Sbjct: 122 FQS--RSEEGISATEFTYPPLQAAD--------FLLLNTTEGCDIQPGGSDQWGNITLGR 171
Query: 257 DVAPKL-GYVKP-ALIHSTFFPAL--QGANTKMSASDLNSAIFLT--DTPKQVKNKVNKH 310
++A + G+ L L + K S+ T +P +
Sbjct: 172 ELARRFNGFTIAEGLT-----IPLVTKLDGPKFGKSESGPKWLDTEKTSPYEFYQFW--- 223
Query: 311 AYSGGQATVEEHRELGGNCDVDIAYQYLTFF-LEDDDKLEQ 350
V+ DV +Y TF E+ ++LEQ
Sbjct: 224 -----INAVDS--------DVINILKYFTFLSKEEIERLEQ 251
>gnl|CDD|215478 PLN02886, PLN02886, aminoacyl-tRNA ligase.
Length = 389
Score = 34.0 bits (78), Expect = 0.14
Identities = 32/128 (25%), Positives = 49/128 (38%), Gaps = 42/128 (32%)
Query: 209 SVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGY---- 264
VG ++P + A+ L++ + L+P DQ + LTRD+A ++
Sbjct: 166 GVGLLTYPVLMASDI------LLYQAD-----LVPVGEDQKQHLELTRDIAERVNNLYGG 214
Query: 265 ---------------VKPALIHSTFFPA------LQGANTKMSASDLN--SAIFLTDTPK 301
V ALI PA L +KMS S + S I L D P
Sbjct: 215 RKWKKLGGRGGSVFKVPEALIP----PAGARVMSLTDGTSKMSKSAPSDQSRINLLDPPD 270
Query: 302 QVKNKVNK 309
+ NK+ +
Sbjct: 271 VIANKIKR 278
>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases. This
group contains proteins identified as sorbitol
dehydrogenases and other sugar dehydrogenases of the
medium-chain dehydrogenase/reductase family (MDR), which
includes zinc-dependent alcohol dehydrogenase and
related proteins. Sorbitol and aldose reductase are
NAD(+) binding proteins of the polyol pathway, which
interconverts glucose and fructose. Sorbitol
dehydrogenase is tetrameric and has a single catalytic
zinc per subunit. NAD(P)(H)-dependent oxidoreductases
are the major enzymes in the interconversion of alcohols
and aldehydes, or ketones. Related proteins include
threonine dehydrogenase, formaldehyde dehydrogenase, and
butanediol dehydrogenase. The medium chain alcohol
dehydrogenase family (MDR) has a NAD(P)(H)-binding
domain in a Rossmann fold of a beta-alpha form. The
N-terminal region typically has an all-beta catalytic
domain. These proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and have 2 tightly bound zinc atoms per subunit. Horse
liver alcohol dehydrogenase is a dimeric enzyme and each
subunit has two domains. The NAD binding domain is in a
Rossmann fold and the catalytic domain contains a zinc
ion to which substrates bind. There is a cleft between
the domains that closes upon formation of the ternary
complex.
Length = 343
Score = 30.3 bits (69), Expect = 1.8
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 11/54 (20%)
Query: 25 WNVTSKSMTGVDYDKLIKKFGSSKID-----------DELIARFEKVTNKKVHH 67
WN S G ++ + S KI ++ A FE++ +++
Sbjct: 285 WNSYSAPFPGDEWRTALDLLASGKIKVEPLITHRLPLEDGPAAFERLADREEFS 338
>gnl|CDD|181535 PRK08673, PRK08673, 3-deoxy-7-phosphoheptulonate synthase;
Reviewed.
Length = 335
Score = 29.9 bits (68), Expect = 2.5
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 345 DDKLEQIRKNYTSGALLTGELKKI--LIDTITPIVTQHQEAMKGVTEEVLAQYMTPRKL 401
D+ +E++ + G + + LI + EA+ GV E V + P KL
Sbjct: 14 DEVIEEVESAGLKTHVSPGVERTVIGLIGDKGKVDAAKFEALPGVEEVV--PVLKPYKL 70
>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413). This is
a family of proteins conserved in fungi. The function is
not known.
Length = 436
Score = 29.8 bits (67), Expect = 2.8
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 349 EQIRKNYTSGALLTGELKKI------LIDTITPIVTQH 380
EQ+R N + L GEL+ ++ T+ P ++ H
Sbjct: 165 EQVRGNVGALRDLGGELRSALPTFTNILHTLAPPISSH 202
>gnl|CDD|225979 COG3448, COG3448, CBS-domain-containing membrane protein [Signal
transduction mechanisms].
Length = 382
Score = 29.4 bits (66), Expect = 3.4
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 241 LIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAI 294
L+ A+ Y LTR P PA +H T P S+ DL++A+
Sbjct: 163 LVGLAL---LYNNLTRRTYPHHWLSPPANLHGTADPP-PSQRVGFSSEDLDAAL 212
>gnl|CDD|235103 PRK03080, PRK03080, phosphoserine aminotransferase; Provisional.
Length = 378
Score = 29.0 bits (66), Expect = 4.4
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 8 GTEPAPT-VDGEDDVVDPWNVTSKSMTGV 35
G+ P + VD + DVV WN T+ TGV
Sbjct: 126 GSLPDLSAVDFDRDVVFTWNGTT---TGV 151
>gnl|CDD|225070 COG2159, COG2159, Predicted metal-dependent hydrolase of the
TIM-barrel fold [General function prediction only].
Length = 293
Score = 28.5 bits (64), Expect = 6.7
Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 10/76 (13%)
Query: 65 VHHLLRRGIFFSHRDMHSILN------LYEQ----GKPFFLYTGRGPSSDSMHLGHLIPF 114
V L G+ + +YE G P ++TG GP + GH P
Sbjct: 122 VRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPGGAGLEKGHSDPL 181
Query: 115 MFTKWLQDVFDVPLVI 130
+ ++ +V+
Sbjct: 182 YLDDVARKFPELKIVL 197
>gnl|CDD|235447 PRK05409, PRK05409, hypothetical protein; Provisional.
Length = 281
Score = 27.8 bits (63), Expect = 8.7
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 11/40 (27%)
Query: 102 SSDSMHLGHLIPFMFT-----------KWLQDVFDVPLVI 130
SSD HL L+P +T + +QD+ PL++
Sbjct: 100 SSDGGHLYDLLPLPYTEEALDHVAERIRQVQDILGRPLLL 139
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.406
Gapped
Lambda K H
0.267 0.0604 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,062,199
Number of extensions: 2078052
Number of successful extensions: 1927
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1882
Number of HSP's successfully gapped: 44
Length of query: 405
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 306
Effective length of database: 6,546,556
Effective search space: 2003246136
Effective search space used: 2003246136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.2 bits)