RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13709
(405 letters)
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytic domain, AN recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP:
c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Length = 437
Score = 518 bits (1336), Expect = 0.0
Identities = 264/399 (66%), Positives = 321/399 (80%), Gaps = 2/399 (0%)
Query: 9 TEPAPTVDGEDDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHL 68
+ E+D VDPW V + S G+DYDKLI +FGSSKID ELI R E+ T ++ HH
Sbjct: 25 NHGPDATEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHF 84
Query: 69 LRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPL 128
LRRGIFFSHRDM+ +L+ YE KPF+LYTGRGPSS++MH+GHLIPF+FTKWLQDVF+VPL
Sbjct: 85 LRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPL 144
Query: 129 VIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFM--NPSFYLNI 186
VIQ+TDDEK LWK++ ++A A ENAK IIACGF + TFIFSD+D+M + FY N+
Sbjct: 145 VIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNV 204
Query: 187 LKIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAI 246
+KIQK V VK IFG D D +GK SFPAIQAAPSFS++FP IF + CLIPCAI
Sbjct: 205 VKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAI 264
Query: 247 DQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNK 306
DQDPYFR+TRDVAP++GY KPAL+HSTFFPALQGA TKMSASD NS+IFLTDT KQ+K K
Sbjct: 265 DQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTK 324
Query: 307 VNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELK 366
VNKHA+SGG+ T+EEHR+ GGNCDVD+++ YLTFFLEDDDKLEQIRK+YTSGA+LTGELK
Sbjct: 325 VNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELK 384
Query: 367 KILIDTITPIVTQHQEAMKGVTEEVLAQYMTPRKLKFDF 405
K LI+ + P++ +HQ K VT+E++ ++MTPRKL FDF
Sbjct: 385 KALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSFDF 423
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytical domain, recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP:
a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A*
2quk_A
Length = 477
Score = 510 bits (1314), Expect = e-180
Identities = 262/406 (64%), Positives = 319/406 (78%), Gaps = 2/406 (0%)
Query: 2 SNVQLDGTEPAPTVDGEDDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVT 61
N + E+D VDPW V + S G+DYDKLI +FGSSKID ELI R E+ T
Sbjct: 65 GNPAPTSNHGPDATEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERAT 124
Query: 62 NKKVHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQ 121
++ HH LRRGIFFSHRDM+ +L+ YE KPF+LYTGRGPSS++MH+GHLIPF+FTKWLQ
Sbjct: 125 GQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQ 184
Query: 122 DVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFM--N 179
DVF+VPLVIQ+TDDEK LWK++ ++A A ENAK IIACGF + TFIFSD+D+M +
Sbjct: 185 DVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYMGMS 244
Query: 180 PSFYLNILKIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVP 239
FY N++KIQK V VK IFG D D +GK SFPAIQAAPSFS++FP IF +
Sbjct: 245 SGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQ 304
Query: 240 CLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDT 299
CLIPCAIDQDPYFR+TRDVAP++GY KPAL+HSTFFPALQGA TKMSASD NS+IFLTDT
Sbjct: 305 CLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDT 364
Query: 300 PKQVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGA 359
KQ+K KVNKHA+SGG+ T+EEHR+ GGNCDVD+++ YLTFFLEDDDKLEQIRK+YTSGA
Sbjct: 365 AKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGA 424
Query: 360 LLTGELKKILIDTITPIVTQHQEAMKGVTEEVLAQYMTPRKLKFDF 405
+LTGELKK LI+ + P++ +HQ K VT+E++ ++MTPRKL
Sbjct: 425 MLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLAAAL 470
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann
fold, crystallography, X-RAY, P. horikoshii,
aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus
horikoshii}
Length = 392
Score = 496 bits (1280), Expect = e-176
Identities = 168/386 (43%), Positives = 229/386 (59%), Gaps = 20/386 (5%)
Query: 18 EDDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSH 77
E+ V PW V VDYDKLIK FG+S + ++L+ + ++T ++ RR FFSH
Sbjct: 3 EEFKVTPWEVEGV----VDYDKLIKHFGTSPLTEDLLEKTAELTKSELPIFFRRKFFFSH 58
Query: 78 RDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEK 137
RD IL YE+G+ FFLYTGRGPS MH+GH+IPF TKWLQ+ F V L IQ+TDDEK
Sbjct: 59 RDYDLILKDYEEGRGFFLYTGRGPSG-PMHIGHIIPFFATKWLQEKFGVNLYIQITDDEK 117
Query: 138 SLWK-NIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPSFYLNILKIQKLVNGT 196
L+K N+ ++ K+ AY+N IIA GF D TFIF + Y + I K +N +
Sbjct: 118 FLFKENLTFDDTKRWAYDNILDIIAVGFDPDKTFIF--QNSEFTKIYEMAIPIAKKINFS 175
Query: 197 TVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTR 256
KA+FG + +G FPAIQ AP+F + CLIP AIDQDPY+RL R
Sbjct: 176 MAKAVFGFTEQSKIGMIFFPAIQIAPTFFE----------RKRCLIPAAIDQDPYWRLQR 225
Query: 257 DVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQ 316
D A LGY K A +HS F P+L + KMSAS +AI+LTD+P+ V+ KV K +GG+
Sbjct: 226 DFAESLGYYKTAALHSKFVPSLTSLSGKMSASKPETAIYLTDSPEDVEKKVWKFTLTGGR 285
Query: 317 ATVEEHRELGGNCDVDIAYQYL-TFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITP 375
T++E RE GG + + +++L FF EDD KL++ +G L GE K+ LI I
Sbjct: 286 PTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERYYACKNGELTCGECKRYLISKIQE 345
Query: 376 IVTQHQEAMKGVTEEVLAQYMTPRKL 401
+ +HQ K E+++ ++ KL
Sbjct: 346 FLKEHQRRRK-KAEKLVEKFKYTGKL 370
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics,
PSI-2, protein structure initiative; HET: PG4; 1.80A
{Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A*
3kt8_A*
Length = 432
Score = 496 bits (1277), Expect = e-175
Identities = 226/410 (55%), Positives = 294/410 (71%), Gaps = 7/410 (1%)
Query: 1 MSNVQLDGTEPAPTVDGEDDVVDPWNVTSK-----SMTGVDYDKLIKKFGSSKIDDELIA 55
+ V +E T D ++ VV PW+V +DYDKLIK+FG+ +++E +
Sbjct: 7 VEKVTQQVSELKST-DVKEQVVTPWDVEGGVDEQGRAQNIDYDKLIKQFGTKPVNEETLK 65
Query: 56 RFEKVTNKKVHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFM 115
RF++VT ++ HH LR+G+FFS RD IL+LYEQGKPFFLYTGRGPSSDSMHLGH+IPF+
Sbjct: 66 RFKQVTGREPHHFLRKGLFFSERDFTKILDLYEQGKPFFLYTGRGPSSDSMHLGHMIPFV 125
Query: 116 FTKWLQDVFDVPLVIQLTDDEKSLWKNI-KPEEAKKLAYENAKAIIACGFKQDSTFIFSD 174
FTKWLQ+VFDVPLVI+LTDDEK L+K+ + K A ENAK IIA GF +TFIFSD
Sbjct: 126 FTKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFSD 185
Query: 175 IDFMNPSFYLNILKIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNK 234
+ +M +FY ++++ + + G+T KA+FG D D +GKF F +IQ A +F S+FP +
Sbjct: 186 LQYMGGAFYETVVRVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGL 245
Query: 235 NHKVPCLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAI 294
K PCLIPCAIDQDPYFR+ RDVA KL Y KPAL+HS FFPALQG+ TKMSASD +AI
Sbjct: 246 PDKTPCLIPCAIDQDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAI 305
Query: 295 FLTDTPKQVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKN 354
F+TDTPKQ++ K+NK+A+SGGQ + + HRELGGN DVD+AYQYL+FF +DD L++
Sbjct: 306 FMTDTPKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDK 365
Query: 355 YTSGALLTGELKKILIDTITPIVTQHQEAMKGVTEEVLAQYMTPRKLKFD 404
Y SG LL+GE+KK+ I+T+ V QE V EE L ++M P KL +
Sbjct: 366 YKSGELLSGEMKKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKLVWG 415
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, ligase, nucleotide-binding;
HET: TRP; 2.42A {Cryptosporidium parvum iowa II}
Length = 393
Score = 492 bits (1269), Expect = e-175
Identities = 201/384 (52%), Positives = 284/384 (73%), Gaps = 2/384 (0%)
Query: 21 VVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSHRDM 80
PW V + + G+DY+KLI KFG I ++I R E++T +K HH RR IF SHRD
Sbjct: 3 GSMPWEVKADNAYGIDYNKLIDKFGCKLITKDMIERMERLTGQKAHHFFRRNIFLSHRDF 62
Query: 81 HSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLW 140
IL++YE+G+ F+LYTGRGPSS+S+H+GHL+PF+FTK+LQD F VPLVIQLTDDEK ++
Sbjct: 63 EKILDVYEKGELFYLYTGRGPSSESLHVGHLVPFLFTKYLQDTFKVPLVIQLTDDEKFIF 122
Query: 141 KN-IKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPSFYLNILKIQKLVNGTTVK 199
K+ + EE AYEN K IIACGF + TFIF++++++ Y +IL+I+K ++ + +K
Sbjct: 123 KSNLTLEETHNYAYENMKDIIACGFDPELTFIFTNLEYI-AELYPDILRIEKKISCSQIK 181
Query: 200 AIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVA 259
+IFG KD +VGKF+FPA+QAAP+FSS+FP IF + CL+P AIDQDPYFR+ RDVA
Sbjct: 182 SIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRDVA 241
Query: 260 PKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQATV 319
P+LGY+KP+ IHS F P+LQG+ TKMSAS NS+IF+ D + ++NK+ K+A+SGGQAT
Sbjct: 242 PRLGYLKPSSIHSIFLPSLQGSQTKMSASVQNSSIFVNDNEESIRNKIMKYAFSGGQATE 301
Query: 320 EEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQ 379
EE R LG N DVD+++QYL F +EDD+KLE+I K Y+SG +L+GE+K IL+ + +
Sbjct: 302 EEQRRLGANLDVDVSWQYLRFLMEDDEKLEEIGKKYSSGEMLSGEIKSILVQELVKLTKN 361
Query: 380 HQEAMKGVTEEVLAQYMTPRKLKF 403
HQ+ + + ++V+A++ + +
Sbjct: 362 HQKNREAINDDVIAKFTNKSREQL 385
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, amino acylation; HET: TRP; 2.60A
{Encephalitozoon cuniculi}
Length = 406
Score = 477 bits (1228), Expect = e-168
Identities = 167/397 (42%), Positives = 244/397 (61%), Gaps = 8/397 (2%)
Query: 9 TEPAPTVDGEDDVVDPWNVTSKSMTG----VDYDKLIKKFGSSKIDDELIARFEKVTNKK 64
+ + + PW+V S +DYDK+I +FG K + L R EK++ K
Sbjct: 14 AQTQGPGSMAEQRITPWDVEVVSTDEVPVAIDYDKIINQFGCEKFNQALADRLEKLSGKP 73
Query: 65 VHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVF 124
H+ RRGI F+HRD + +L+ +PF+LYTGRGPSS +MH+GH IPF+ K++QD F
Sbjct: 74 AHYFFRRGIVFAHRDFNLLLDEIANNRPFYLYTGRGPSSKTMHIGHTIPFLLCKYMQDAF 133
Query: 125 DVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPSFYL 184
+ LVIQ+TDDEK LWK+++ E+A EN K I+ GF T+IFS+++ + F
Sbjct: 134 KIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPKLTYIFSNVEASHH-FEE 192
Query: 185 NILKIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPC 244
NILKI K +N +FG ++G+ FPA + AP FSS+F I CL+P
Sbjct: 193 NILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIG---KGAMCLVPA 249
Query: 245 AIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVK 304
A+DQDP+FRL RD A LG KP+ I+ + P L+G N KMSASD NS+I+L D ++
Sbjct: 250 AVDQDPFFRLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLDDAQDTIR 309
Query: 305 NKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGE 364
K+ +AYSGG+ T+EEHRE GG+ DVD+ ++YL +FL+DD +LE+ R Y G + + E
Sbjct: 310 KKIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGYIKGEITSKE 369
Query: 365 LKKILIDTITPIVTQHQEAMKGVTEEVLAQYMTPRKL 401
+K+ + I V+++QE+ K VT++ L ++ K
Sbjct: 370 MKEKCVVVIQEFVSRYQESRKRVTDDDLRAFIDINKF 406
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, LIG nucleotide-binding,
protein biosynthesis; 2.80A {Trypanosoma brucei}
Length = 395
Score = 460 bits (1185), Expect = e-162
Identities = 215/385 (55%), Positives = 277/385 (71%), Gaps = 7/385 (1%)
Query: 18 EDDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSH 77
+ VV PW+V V+YDKLIK FGS ID+ L+ R E+V KK HH LRRGIFFSH
Sbjct: 8 HEAVVTPWSVE----GDVNYDKLIKDFGSHAIDEALLERIERVLGKKPHHFLRRGIFFSH 63
Query: 78 RDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEK 137
RD++ +L++YE G+PF+LYTGRGPSS+SMH+GHLIPFMFTKWLQD F VPLVIQ+TDDEK
Sbjct: 64 RDLNLLLDVYESGQPFYLYTGRGPSSESMHMGHLIPFMFTKWLQDSFRVPLVIQMTDDEK 123
Query: 138 SLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPSFYLNILKIQKLVNGTT 197
++NI E+ + + EN K IIA GF + TFIF D D+M Y + KI++ +
Sbjct: 124 FYFRNIPMEQVEAMTTENIKDIIAMGFDPELTFIFRDFDYM-GCMYRTVAKIERAFTASQ 182
Query: 198 VKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNH-KVPCLIPCAIDQDPYFRLTR 256
V+ FG D+ G++ FPAIQAAPSFS+ FP IF + V CLIP AIDQDPYFRLTR
Sbjct: 183 VRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYFRLTR 242
Query: 257 DVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQ 316
D+AP+LGY+KPA+IHS FFP L G KMS+S A+ LTDT K VK+K+NKHA+SGG
Sbjct: 243 DIAPRLGYLKPAVIHSKFFPGLSGPKGKMSSSSGT-AVLLTDTEKMVKDKINKHAFSGGG 301
Query: 317 ATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPI 376
AT +EH LG N +VD+ Q+L+FFLEDD++L +++K Y G ++TGE+KK+LI+TIT I
Sbjct: 302 ATKQEHFLLGANVEVDVPIQWLSFFLEDDEELARVKKEYMLGRIMTGEVKKLLINTITAI 361
Query: 377 VTQHQEAMKGVTEEVLAQYMTPRKL 401
HQE K VT+E + + + R +
Sbjct: 362 TKTHQEKRKLVTDEDVQLFTSTRIM 386
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics,
medical structural GEN pathogenic protozoa, MSGPP,
ligase; 3.00A {Entamoeba histolytica}
Length = 386
Score = 456 bits (1174), Expect = e-160
Identities = 118/385 (30%), Positives = 202/385 (52%), Gaps = 6/385 (1%)
Query: 18 EDDVVDPWNV-TSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFS 76
P + S + DY++LI G + I + I R EK++ K HH L RG+F +
Sbjct: 7 HHQTQTPSQLLQSFTTRTTDYNQLINSVGINAITPQQIQRIEKLSGKAPHHYLSRGVFLA 66
Query: 77 HRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDE 136
+ + L+ E KP F++ + P + L I F ++LQD F++ ++IQ+ DD
Sbjct: 67 EKSLDKFLDDVEAKKPTFIFIQKYPQK-EVALEEYITLEFARYLQDAFNIQVIIQILDDI 125
Query: 137 KSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPSFYLNILKIQKLVNGT 196
K L + EA K++ + K I+A GF +D TFI++D + Y I ++K
Sbjct: 126 KVLNREATINEASKMSNDLMKYILAFGFNEDKTFIYTDYQYF-GKMYRTISLVEKATAYN 184
Query: 197 TVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTR 256
V+ F + D++GK + P+I A FS ++ F+ CL+ +I + +
Sbjct: 185 VVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSS--PARCLVLDSIKNVQFHSIID 242
Query: 257 DVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQ 316
+A L +++P ++ P L G TK +++I L+D KQV+ K+NK A+SGG+
Sbjct: 243 QIATTLNFIQPTVLFHKMVPLLSG-VTKFDIPSDHNSILLSDNAKQVERKINKLAFSGGR 301
Query: 317 ATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPI 376
T EEH++LGG CD+D+++Q L F D+ +++ + + Y+ G LL+GELKKI+ ++
Sbjct: 302 NTTEEHKKLGGQCDIDVSFQLLNIFSSDNAQVKDVEEKYSKGELLSGELKKIVSASMKDF 361
Query: 377 VTQHQEAMKGVTEEVLAQYMTPRKL 401
+ + K +T L Y++ K
Sbjct: 362 IVAYDAKKKPITTAYLKAYISKTKF 386
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi
aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia
lamblia atcc 50803}
Length = 451
Score = 425 bits (1093), Expect = e-147
Identities = 166/451 (36%), Positives = 250/451 (55%), Gaps = 54/451 (11%)
Query: 6 LDGTEPAPTVDGEDDVVDPWNVTS----KSMTGVDYDKLIKKFGSSKIDDELIARFEKVT 61
+ E P ++ V Y+ +I +FG++ I D+L+ RFE VT
Sbjct: 1 MAHHHHHHMGTLEAQTQGPGSMMETDATAEAAAVAYEDIITRFGAAPITDDLLKRFETVT 60
Query: 62 NKKVHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQ 121
K H +LRRG+F++HRD L+ YE+G P ++YTGRGPSS ++HLGHL+PF+FTK+LQ
Sbjct: 61 GTKAHPMLRRGLFYAHRDFEEFLSYYEKGHPIYIYTGRGPSSGALHLGHLLPFIFTKYLQ 120
Query: 122 DVFDVPLVIQLTDDEKSLW-KNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMN- 179
D F +VIQ+TDDEK L +++ E EN K IIACGF D TFIF + +++
Sbjct: 121 DAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPDKTFIFINSQYLSL 180
Query: 180 PSFYLNILKIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVP 239
+ Y + +++ + ++A FG + +VG +FP Q P +S+ F + +P
Sbjct: 181 KNRYRFSCLVDRMLPISQLRASFGFSNDANVGYAAFPPKQMLPVYSTYFDGLPFTRVPLP 240
Query: 240 ------------------------------------------------CLIPCAIDQDPY 251
CLI I+QDPY
Sbjct: 241 VGTGNEDAADAVSTKKASKKTPKKDAVLSPVHVVEELFPDSKRYQKAMCLIASGIEQDPY 300
Query: 252 FRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHA 311
FRL RD+AP++G+ K A + F P LQG+ TKMSASD NSAI+LTDTP Q+KNK+N++A
Sbjct: 301 FRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLTDTPAQIKNKINRYA 360
Query: 312 YSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILID 371
+SGG+ T EEHR G + VD++ +YL F++DD +LE+++ +Y +G LLTGE+K LI
Sbjct: 361 FSGGRDTEEEHRAFGADLSVDVSVRYLEVFMKDDAELEKLKADYKTGKLLTGEVKATLIG 420
Query: 372 TITPIVTQHQEAMKGVTEEVLAQYMTPRKLK 402
+ ++ +H E V ++ + ++L+
Sbjct: 421 ILQGLIKEHAERRDKVDTTMIESFTVKKELQ 451
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding;
HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Length = 348
Score = 283 bits (726), Expect = 2e-93
Identities = 68/351 (19%), Positives = 120/351 (34%), Gaps = 38/351 (10%)
Query: 69 LRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPL 128
I + + L + G+ F Y G PS +H+ + + +
Sbjct: 17 QLLSIAEECETLDRLKQLVDSGRIFTAYNGFEPSG-RIHIAQALITVMNTNNMIECGGQM 75
Query: 129 VIQLTDDEKSLWKNIK--PEEAKKLAYENAKAIIACGFKQDSTFIF--SDIDFMNPSFYL 184
+I + D + + + ++L + ACG D T S+ NPS+
Sbjct: 76 IIYIADWFAKMNLKMNGDINKIRELGRYFIEVFKACGINLDGTRFIWASEFIASNPSYIE 135
Query: 185 NILKIQKLVNGTTVKAIFGLKDFD-----SVGKFSFPAIQAAPSFSSTFPLIFNKNHKVP 239
+L I + + VK + + + +P +QAA F I
Sbjct: 136 RMLDIAEFSTISRVKRCCQIMGRNESDCLKASQIFYPCMQAADVFELVPEGI-------- 187
Query: 240 CLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDT 299
+ IDQ L + A G P + +L G KMS SD AIF+ DT
Sbjct: 188 DICQLGIDQRKVNMLAIEYANDRGLKIPISLSHHMLMSLSGPKKKMSKSDPQGAIFMDDT 247
Query: 300 PKQVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDD------DKLEQIRK 353
++V K+++ + I Y L +F + +E I++
Sbjct: 248 EQEVSEKISRAYCTDETF--------DNPIFEYIKYLLLRWFGTLNLCGKIYTDIESIQE 299
Query: 354 NYTSGALLTGELKKILIDTITPIVTQHQEAMKGVTE----EVLAQYMTPRK 400
++ ++ ELK + + I I+ +E K + Y P K
Sbjct: 300 DF--SSMNKRELKTDVANYINTIIDLVREHFKKPELSELLSNVKSYQQPSK 348
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex;
HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A
{Saccharomyces cerevisiae}
Length = 394
Score = 134 bits (338), Expect = 1e-35
Identities = 73/326 (22%), Positives = 115/326 (35%), Gaps = 42/326 (12%)
Query: 86 LYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKNIKP 145
L Q + LY G P+ H G+ +P + + L D L P
Sbjct: 33 LEVQKRHLKLYWGTAPTG-RPHCGYFVPMTKLADFLK-AGCEVTVLLADLHAFLDNMKAP 90
Query: 146 -EEAKKLA--YENA--KAIIACGFKQDST-FIFSDIDFMNPSFYLNILKIQKLVNGTTVK 199
E A YE + + + F+ + P + ++I ++ +V+ K
Sbjct: 91 LEVVNYRAKYYELTIKAILRSINVPIEKLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAK 150
Query: 200 AIFGLK----DFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLT 255
+ +P +QA V C +DQ F L
Sbjct: 151 RAGADVVKQVANPLLSGLIYPLMQALDEQF----------LDVDCQFG-GVDQRKIFVLA 199
Query: 256 RDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGG 315
+ P LGY K A + + P L KMSASD NS I L + PKQVK K+N S G
Sbjct: 200 EENLPSLGYKKRAHLMNPMVPGLAQGG-KMSASDPNSKIDLLEEPKQVKKKINSAFCSPG 258
Query: 316 QATVEEHRELGGNCDVDIAYQ-------YLTFFLEDDDK---------LEQIRKNYTSGA 359
VEE+ L V Q + FF++ +K E+++ +
Sbjct: 259 N--VEENGLLSFVQYVIAPIQELKFGTNHFEFFIDRPEKFGGPITYKSFEEMKLAFKEEK 316
Query: 360 LLTGELKKILIDTITPIVTQHQEAMK 385
L +LK + D I ++ ++
Sbjct: 317 LSPPDLKIGVADAINELLEPIRQEFA 342
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A
{Plasmodium falciparum}
Length = 373
Score = 109 bits (273), Expect = 1e-26
Identities = 57/339 (16%), Positives = 110/339 (32%), Gaps = 37/339 (10%)
Query: 83 ILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKN 142
+ + Y G PS MH+ + + + I D + N
Sbjct: 47 LRVKLLLKRKLICYDGFEPSGR-MHIAQGLLKSI-IVNKLTSNGCTFIFWIADWFAHLNN 104
Query: 143 IKPEEAKKL---AYENAKAIIACGFKQDSTFIF---SDIDFMNPSFYLNILKIQKLVNGT 196
+ KK+ + +CG ++ +I+ ++ +L I + N
Sbjct: 105 KMSGDLKKIKKVGSYFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLDISRSFNIN 164
Query: 197 TVKAIFGLK-----DFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPY 251
+K + + + + +P +Q A F V + IDQ
Sbjct: 165 RMKRCLKIMGRSEGEENYCSQILYPCMQCADIFF----------LNVD-ICQLGIDQRKV 213
Query: 252 FRLTRDVAPKLGYVKPALIHSTFF-PALQGANTKMSASDLNSAIFLTDTPKQVKNKVNK- 309
L R+ K +I S P L KMS SD NSAIF+ D+ V K+ K
Sbjct: 214 NMLAREYCDIKKIKKKPVILSHGMLPGLLEGQEKMSKSDENSAIFMDDSESDVNRKIKKA 273
Query: 310 -----HAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGE 364
+ + + ++ + + L+++ +Y +G + +
Sbjct: 274 YCPPNVIENNPIYAYAKSIIFPSYNEFNLVRKEKNGGDKTYYTLQELEHDYVNGFIHPLD 333
Query: 365 LKK----ILIDTITPIVT--QHQEAMKGVTEEVLAQYMT 397
LK + + P+ Q+ K + E+ +T
Sbjct: 334 LKDNVAMYINKLLQPVRDHFQNNIEAKNLLNEIKKYKVT 372
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, tyrrs, pseudod translation, ATP-binding,
nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania
major} PDB: 3p0i_A* 3p0h_A*
Length = 690
Score = 108 bits (270), Expect = 2e-25
Identities = 58/334 (17%), Positives = 106/334 (31%), Gaps = 49/334 (14%)
Query: 83 ILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFM--FTKWLQDVFDVPLVI-----QLTDD 135
+ NL E+ Y G PS MH+ I K + + + D
Sbjct: 31 LRNLIEKKPLIRCYDGFEPSGR-MHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDK 89
Query: 136 EKSLWKNIKPEEAKKLAYENAKAIIACGFKQD-STFIF--SDIDFMNPSFYLNILKIQKL 192
+ E+ + + + A G D F++ +I +++ +L I +
Sbjct: 90 VGG-----ELEKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRMVLDIGRQ 144
Query: 193 VNGTTVK---AIFGLKDFD-SVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQ 248
+K I G + + + +P +Q F + +DQ
Sbjct: 145 NTIARIKKCCTIMGKTEGTLTAAQVLYPLMQCCDIF------FLKADI-----CQLGLDQ 193
Query: 249 DPYFRLTRDVAPKLGY-VKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKV 307
L R+ +G +KP ++ L+ KMS SD +SAIF+ DT + V K+
Sbjct: 194 RKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMEDTEEDVARKI 253
Query: 308 NKHAYSGGQATVEEHRELGGNCDVDIA----YQYLTFFLEDDDK------------LEQI 351
+ AY G Y + E +
Sbjct: 254 RQ-AYCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVYARPGAAATIDGTTYATYEDL 312
Query: 352 RKNYTSGALLTGELKKILIDTITPIVTQHQEAMK 385
+ + S + LK LID + ++ ++
Sbjct: 313 EQAFVSDEVSEDALKSCLIDEVNALLEPVRQHFA 346
Score = 101 bits (253), Expect = 3e-23
Identities = 47/390 (12%), Positives = 113/390 (28%), Gaps = 74/390 (18%)
Query: 32 MTGVDYDKLIKKFGSSKIDD------------ELIA----RFEKVTNKKVHH--LLRRGI 73
T Y+ L + F S ++ + L+ F +
Sbjct: 304 TTYATYEDLEQAFVSDEVSEDALKSCLIDEVNALLEPVRQHFASNEEAHELLEAVKSYRK 363
Query: 74 FFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLT 133
+ + KP + + + + ++ + + + L
Sbjct: 364 DGATLPLAETALPAAPAKPHACMWMPALLKVPLDVAEGMIKVTKDFIAAHPEGTVTLVLP 423
Query: 134 DDEKSLWKNIK--PEEAKKLAYENAKAIIACGFKQDSTFIF-SDIDFMNPSFY-LNILKI 189
D I ++ N + A G + +++ N + ++++ I
Sbjct: 424 DWSAVASDEITGVEKDISAALQVNCALLKAYGLPSSVKIVTENEVILGNCDDFWVSVIGI 483
Query: 190 QKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQD 249
+ + V+ ++G + + G+ ++ A + L+ + +H +
Sbjct: 484 ARKNLLSHVEELYG-GEVRNAGQVIAALMRVATA------LMLSVSHVIS-----TSLDG 531
Query: 250 PYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNK 309
R+ + PAL + + ++L D ++ K+ K
Sbjct: 532 HINAFAREYTKERI--DCVQTLEGRIPALHRPGAAPAVLGADDVLYLDDNDMDIRRKIKK 589
Query: 310 HAY-------------------SGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQ 350
AY G ++E GGN +++ + E
Sbjct: 590 -AYSAPNEEANPVISVAQHLLAQHGALSIERGEANGGN---------VSY-----NTPEA 634
Query: 351 IRKNYTSGALLTGELK----KILIDTITPI 376
+ + SGAL +LK ++L+D
Sbjct: 635 LVADCGSGALHPADLKAAVLQLLLDRSAQA 664
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 2.20A {Aeropyrum pernix}
Length = 364
Score = 102 bits (256), Expect = 2e-24
Identities = 66/352 (18%), Positives = 124/352 (35%), Gaps = 78/352 (22%)
Query: 83 ILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDV-FDVPLVI-----QLTDDE 136
+ L G Y G PS H+G L+ K L + D ++ + D
Sbjct: 26 LKGLLASGARIKGYIGYEPSGV-AHIGWLVWMYKVKDLVEAGVDFSVLEATWHAYIND-- 82
Query: 137 KSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIF---SDIDFMNPSFYLNILKIQKLV 193
K + + A + ++ F ++ + ++ ++++ K
Sbjct: 83 ----KLGGDMDLIRAAARIVRRVMEAAGVPVERVRFVDAEELAS-DKDYWGLVIRVAKR- 136
Query: 194 NGTTVKAIFGLKDFD---------SVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPC 244
++ + K +P +Q + F + +
Sbjct: 137 --ASLARVRRALTIMGRRAEEAEVDASKLIYPLMQVSDIFY----------MDL-DIALG 183
Query: 245 AIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQG---------------ANTKMSASD 289
+DQ L RDVA KLG KP IH+ +LQG A KMS S
Sbjct: 184 GMDQRKAHMLARDVAEKLGRKKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSK 243
Query: 290 LNSAIFLTDTPKQVKNKVNKHAYSGGQATVEEHRELGGNCDVDIA------YQYLTFFLE 343
+A+F+ D+ ++ K+ K AY +++ GN ++IA T ++
Sbjct: 244 PETAVFVVDSDDDIRRKIRK-AYC-------PAKQVQGNPVLEIARYILFARDGFTLRVD 295
Query: 344 DDDK---------LEQIRKNYTSGALLTGELKKILIDTITPIVTQHQEAMKG 386
K E++ ++YT G L +LK + +++ +V + A+ G
Sbjct: 296 RPAKYGGPVEYTSYEELERDYTDGRLHPLDLKNAVAESLIEVVRPIRGAVLG 347
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation,
structural genomics; HET: TYR; 2.20A {Pyrococcus
horikoshii}
Length = 375
Score = 91.8 bits (228), Expect = 1e-20
Identities = 64/346 (18%), Positives = 113/346 (32%), Gaps = 67/346 (19%)
Query: 83 ILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKW--LQDV-FDVPLVI-----QLTD 134
+ +L+E G P Y G S +HLG + K Q + + + D
Sbjct: 24 LRHLFEIGAPLQHYIGFEISG-YIHLGTGLMAG-AKIADFQKAGIKTRVFLADWHSWIND 81
Query: 135 DEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMN-PSFYLNILKIQKLV 193
+ I+ K K+I G + + ++ ++ I K V
Sbjct: 82 KLGGDLEVIQEVALKYFKVGMEKSIEVMGGDPKKVEFVLASEILEKGDYWQTVIDISKNV 141
Query: 194 NGTTVKAIFGLK-----DFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQ 248
+ V + + K +P +Q A F V + +DQ
Sbjct: 142 TLSRVMRSITIMGRQMGEAIDFAKLIYPMMQVADIFY----------QGVT-IAHAGMDQ 190
Query: 249 DPYFRLTRDVAPKLGY---------VKPALIHSTFFPALQG----------------ANT 283
+ +VA KL Y +KP +H LQ A
Sbjct: 191 RKAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQM 250
Query: 284 KMSASDLNSAIFLTDTPKQVKNKVNK------HAYSGGQATVEEH---RELGGNCDVDIA 334
KMS S SA+F+ D+P++++ K+ K E+ RE V
Sbjct: 251 KMSKSKPYSAVFIHDSPEEIRQKLRKAFCPAREVRYNPVLDWVEYIIFREEPTEFTVHRP 310
Query: 335 YQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKIL----IDTITPI 376
++ E++++++ G L +LK + I+ + PI
Sbjct: 311 AKFGG--DVTYTTFEELKRDFAEGKLHPLDLKNAVAEYLINLLEPI 354
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: TYR; 1.80A {Archaeoglobus
fulgidus}
Length = 323
Score = 78.5 bits (194), Expect = 2e-16
Identities = 71/329 (21%), Positives = 126/329 (38%), Gaps = 75/329 (22%)
Query: 83 ILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDV-FDVPLVI-----QLTDDE 136
+ L E + Y G PS + +HLGH++ LQ+ F++ +++ L +
Sbjct: 23 LRQLIETKEKPRAYVGYEPSGE-IHLGHMMTVQKLMDLQEAGFEIIVLLADIHAYLNE-- 79
Query: 137 KSLWKNIKPEEAKKLAYENAKAIIACGFKQDST-FIFSDIDFMNPSFYLNILKIQKLVNG 195
K + EE ++A N K IA G + F+ ++ Y+ L + K+
Sbjct: 80 KGTF-----EEIAEVADYNKKVFIALGLDESRAKFVLGS-EYQLSRDYV--LDVLKMARI 131
Query: 196 TTVKAIFGLKDFDSVGKFS---------FPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAI 246
TT+ + D V + +P +QA + +
Sbjct: 132 TTLNRA--RRSMDEVSRRKEDPMVSQMIYPLMQALDIAH----------------LGVDL 173
Query: 247 -----DQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPK 301
DQ L R+ P+LGY P +H+ L G KMS+S + I + D P+
Sbjct: 174 AVGGIDQRKIHMLARENLPRLGYSSPVCLHTPILVGLDG--QKMSSS-KGNYISVRDPPE 230
Query: 302 QVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYL-----TFFLEDDDKL-------- 348
+V+ K+ K AY + N +DIA ++ +E D K
Sbjct: 231 EVERKIRK-AYC-------PAGVVEENPILDIAKYHILPRFGKIVVERDAKFGGDVEYAS 282
Query: 349 -EQIRKNYTSGALLTGELKKILIDTITPI 376
E++ +++ SG L +LK + + +
Sbjct: 283 FEELAEDFKSGQLHPLDLKIAVAKYLNML 311
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique
anticodon recognit domain, dimer, ligase; 1.18A {Homo
sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Length = 372
Score = 78.3 bits (193), Expect = 3e-16
Identities = 60/328 (18%), Positives = 109/328 (33%), Gaps = 61/328 (18%)
Query: 89 QGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDV-FDVPLVI----QLTDDEKSLWKNI 143
+ + +Y G + H+ + +P +V ++ D+ K+ W+ +
Sbjct: 32 KERELKIYWGTATTGK-PHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNMKAPWELL 90
Query: 144 KPEEAKKLAYENAKAII-ACGFKQDST-FIFSDIDFMNPSFYLNILKIQKLVNGTTVKAI 201
E KA++ + G + FI D+ Y L + +L + T
Sbjct: 91 --ELRVSYYENVIKAMLESIGVPLEKLKFIKGT-DYQLSKEYT--LDVYRLSSVVTQHDS 145
Query: 202 FGLKDFDSVGK---------FSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYF 252
K V K +P +QA KV IDQ F
Sbjct: 146 --KKAGAEVVKQVEHPLLSGLLYPGLQALDEEY----------LKVDAQFG-GIDQRKIF 192
Query: 253 RLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAY 312
P LGY K + + P L G +KMS+S+ S I L D + VK K+ K
Sbjct: 193 TFAEKYLPALGYSKRVHLMNPMVPGLTG--SKMSSSEEESKIDLLDRKEDVKKKLKKAFC 250
Query: 313 SGGQATVEEHRELGGNCDVDIAYQYLTFFLEDD---------------DKLEQIRKNYTS 357
E + N + +++ F L+ + + K++ +
Sbjct: 251 --------EPGNVENNGVLSF-IKHVLFPLKSEFVILRDEKWGGNKTYTAYVDLEKDFAA 301
Query: 358 GALLTGELKKILIDTITPIVTQHQEAMK 385
+ G+LK + + ++ +E
Sbjct: 302 EVVHPGDLKNSVEVALNKLLDPIREKFN 329
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus
radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Length = 351
Score = 77.2 bits (191), Expect = 8e-16
Identities = 78/331 (23%), Positives = 126/331 (38%), Gaps = 59/331 (17%)
Query: 79 DMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKW--LQDVFDVPLVI----QL 132
M + +P L TG P+ ++HLGHL LQD ++ +++ L
Sbjct: 10 TMTTPTPAATPARPRVL-TGDRPTG-ALHLGHLAG-SLQNRVRLQDEAELFVLLADVQAL 66
Query: 133 TDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIF--SDIDFMNPS------FYL 184
TD +PE+ ++ A +A G T S + P ++L
Sbjct: 67 TDHFD------RPEQVRENVLAVALDYLAAGLDPQKTTCVVQSAV----PELAELTVYFL 116
Query: 185 NILKIQKLVNGTTVK---AIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCL 241
N++ + L TVK A G + G F +P QAA F L
Sbjct: 117 NLVTVSHLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAADI------AAFGAT-----L 165
Query: 242 IPCAIDQDPYFRLTRDVAPKLGYV--------KPALIHSTFFPALQGANTKMSASDLNSA 293
+P DQ P TR++ + + + L P L G KMS S L +A
Sbjct: 166 VPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDG-QAKMSKS-LGNA 223
Query: 294 IFLTDTPKQVKNKVNKHAYSGGQATVEEHRELG--GNCDVDIAYQYLTFFLEDDDKLEQI 351
I L D+ +V KV Y T H G + + + +L F D +++ +
Sbjct: 224 IALGDSADEVARKVMG-MY-----TDPGHLRASDPGRVEGNPVFTFLDAFDPDPARVQAL 277
Query: 352 RKNYTSGALLTGELKKILIDTITPIVTQHQE 382
+ Y +G L ++KK LID + ++ +
Sbjct: 278 KDQYRAGGLGDVKVKKHLIDVLNGVLAPIRT 308
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint
center for struc genomics, JCSG, protein structure
initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga
maritima}
Length = 340
Score = 75.3 bits (186), Expect = 3e-15
Identities = 53/277 (19%), Positives = 107/277 (38%), Gaps = 51/277 (18%)
Query: 145 PEEAKKLAYENAKAIIACGFKQDSTFIF--SDIDFMNPS------FYLNILKIQKLVNGT 196
+ K+ + + +ACG + + IF S + + I+ + +L
Sbjct: 64 VSKLKEYTRDLVRGFLACGIDPEKSVIFVQSGV----KEHAELALLFSMIVSVSRLERVP 119
Query: 197 TVKAI---FGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFR 253
T K I KD + G +P +QAA LI+ +P DQ +
Sbjct: 120 TYKEIKSELNYKDLSTAGFLIYPVLQAADI------LIYKAEG-----VPVGEDQVYHIE 168
Query: 254 LTRDVAPKLGY------VKP-ALIHSTFFPALQGANT-KMSASDLNSAIFLTDTPKQVKN 305
LTR++A + Y +P A++ P L G + KMS S + I L + K+++
Sbjct: 169 LTREIARRFNYLYDEVFPEPEAILSRV--PKLPGTDGRKMSKSY-GNIINLEISEKELEQ 225
Query: 306 KVNKHAYSGGQATVEEHRELG--GNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTG 363
+ + T GN + ++Y F +++ + + + T+ ++
Sbjct: 226 TILR-MM-----TDPARVRRSDPGNPENCPVWKYHQAFDISEEESKWVWEGCTTASIGCV 279
Query: 364 ELKKILIDTI----TPIVTQHQEAM--KGVTEEVLAQ 394
+ KK+L+ + PI ++ ++V+ +
Sbjct: 280 DCKKLLLKNMKRKLAPIWENFRKIDEDPHYVDDVIME 316
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase,
translation, structural GEN NPPSFA; 2.50A {Thermus
thermophilus}
Length = 337
Score = 67.2 bits (165), Expect = 1e-12
Identities = 55/273 (20%), Positives = 103/273 (37%), Gaps = 45/273 (16%)
Query: 145 PEEAKKLAYENAKAIIACGFKQDSTFIF--SDIDFMNP-----SFYLN-ILKIQKLVNGT 196
P + +E A IA G + +F S + P S+ + + L T
Sbjct: 55 PSTLAQRTFEAALVNIAAGLDPEKVTLFVQSHV----PEHTELSWVFTTLTPLGDLTRMT 110
Query: 197 TVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTR 256
K ++ G +P +QAA LI+ + +P DQ + LTR
Sbjct: 111 QFKDKASKQETVWSGLLMYPVLQAADI------LIYKADT-----VPVGEDQVQHIELTR 159
Query: 257 DVAPKLGY------VKP-ALIHSTF--FPALQGANTKMSASDLNSAIFLTDTPKQVKNKV 307
++A + + +P AL++ P + G KMS S + I L + + + K+
Sbjct: 160 EIARRFNHLFGETFPEPQALLNPEAPRVPGIDG-KAKMSKSL-GNTIGLLEPEESIWQKI 217
Query: 308 NKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKK 367
G+ + I + YL++F D +E +++ Y + T +K+
Sbjct: 218 QH-LPDD---PQRIRLSDPGDPERTILFTYLSYF-APKDLVEALKEEYRKAGVGTYVVKR 272
Query: 368 IL----IDTITPIVTQHQEAMK--GVTEEVLAQ 394
IL ++ + PI + + K + L +
Sbjct: 273 ILFDHLMEALRPIRERAEALKKDPDYVMDALLE 305
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus
jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A*
1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A
3n2y_A* 2hgz_A*
Length = 314
Score = 65.4 bits (160), Expect = 5e-12
Identities = 63/333 (18%), Positives = 123/333 (36%), Gaps = 75/333 (22%)
Query: 83 ILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDV-FDVPLVI-----QLTDDE 136
+ + ++ + Y G PS +HLGH + LQ+ FD+ +++ L
Sbjct: 20 LREVLKKDEKS-AYIGFEPSGK-IHLGHYLQIKKMIDLQNAGFDIIILLADLAAYLNQ-- 75
Query: 137 KSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPSFYLNILKIQKLVNGT 196
K +E +K+ N K A G K +++ ++ + LN+ ++ T
Sbjct: 76 KGEL-----DEIRKIGDYNKKVFEAMGLKA--KYVYGSEFQLDKDYTLNVYRLALK---T 125
Query: 197 TVKAIFGLKDFD-------SVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAI--- 246
T+K + V + +P +Q S + +
Sbjct: 126 TLKRARRSMELIAREDENPKVAEVIYPIMQVNTSHY----------------LGVDVAVG 169
Query: 247 --DQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVK 304
+Q L R++ PK K IH+ L G KMS+S + I + D+P++++
Sbjct: 170 GMEQRKIHMLARELLPK----KVVCIHNPVLTGLDGEG-KMSSS-KGNFIAVDDSPEEIR 223
Query: 305 NKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTF----------FLED--DDKLEQIR 352
K+ K AY + GN ++IA +Y F D + E++
Sbjct: 224 AKIKK-AYC-------PAGVVEGNPIMEIA-KYFLEYPLTIKRPEKFGGDLTVNSYEELE 274
Query: 353 KNYTSGALLTGELKKILIDTITPIVTQHQEAMK 385
+ + L LK + + + I+ ++ +
Sbjct: 275 SLFKNKELHPMYLKNAVAEELIKILEPIRKRLL 307
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, alpha-beta
structure; HET: ADP TRP; 2.15A {Campylobacter jejuni
subsp} PDB: 3m5w_A*
Length = 322
Score = 55.6 bits (135), Expect = 7e-09
Identities = 48/273 (17%), Positives = 96/273 (35%), Gaps = 48/273 (17%)
Query: 145 PEEAKKLAYENAKAIIACGFKQDSTFIF--SDIDFMNP-----SFYLN-ILKIQKLVNGT 196
E+ K+ + + A A ++ G + + SD+ + L+ + L
Sbjct: 53 GEKLKQNSLKAAAAFLSLGIDPQKSVFWLQSDV----KEVMELYWILSQFTPMGLLERAH 108
Query: 197 TVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTR 256
+ K S G FS+P + AA L+F+ +P DQ + + R
Sbjct: 109 SYKDKVAKGLSASHGLFSYPVLMAADI------LLFDTRI-----VPVGKDQIQHVEIAR 157
Query: 257 DVAPKLGY------VKP-ALIHSTF--FPALQGANTKMSASDLNSAIFLTDTPKQVKNKV 307
D+A K+ P A ++ GA KMS S + I + + K +K ++
Sbjct: 158 DIALKVNNEWGEIFTLPEARVNEEVAVVVGTDGA--KMSKSY-QNTIDIFSSEKTLKKQI 214
Query: 308 NKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKK 367
+ + A + + ++ FL++ + ++++ Y G G K
Sbjct: 215 SS-IVTDSTALEDPKDH-----ENCNIFKIAKLFLDESGQ-KELQIRYEKGGEGYGHFKI 267
Query: 368 IL----IDTITPIVTQHQEAM--KGVTEEVLAQ 394
L ++ E + +E+L
Sbjct: 268 YLNELVNAYFKEAREKYNELLEKPSHLKEILDF 300
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.4 bits (122), Expect = 4e-07
Identities = 49/370 (13%), Positives = 108/370 (29%), Gaps = 116/370 (31%)
Query: 19 DDVVDPWN-----------VTSKSMTGVD-------YDKLIKKFGSSKIDDELIARFEKV 60
+V + +T++ D + + DE+ + K
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 61 TN----------KKVHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMH--- 107
+ + I S RD + + ++ + D +
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH-----------VNCDKLTTII 359
Query: 108 ---LGHLIPFMFTKWLQD--VF--DVPL---VIQLTDDEKSLWKNIKPEEAKKLAYE-NA 156
L L P + K VF + ++ L +W ++ + + + +
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL------IWFDVIKSDVMVVVNKLHK 413
Query: 157 KAIIACGFKQDSTFIFSDIDFMNPSFYLNILKI--------QKLVNGTTVKAIFGLKDF- 207
+++ K+ + I PS YL + + +V+ + F D
Sbjct: 414 YSLVEKQPKESTISI--------PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 208 -DSVGKFSF-------PAIQAAPSFSSTFPLIF-------NK--NHKVPCLIPCAI---- 246
+ ++ + I+ + F ++F K + +I
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTL-FRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524
Query: 247 -----------DQDPYF-RLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAI 294
D DP + RL + L ++ LI S + L+ ++ + AI
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR-----IALMAEDEAI 579
Query: 295 FLTDTPKQVK 304
F + KQV+
Sbjct: 580 FE-EAHKQVQ 588
Score = 43.7 bits (102), Expect = 1e-04
Identities = 72/481 (14%), Positives = 144/481 (29%), Gaps = 143/481 (29%)
Query: 30 KSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRG--------IFFSHRD-- 79
K + V D + F + D + + +++ H++ +F++
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSIL---SKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 80 -------MHSILNL-YEQGKPFFLYTG-----RGPSS---------DSMHLGHLIPFMFT 117
+ +L + Y+ FL + R PS D ++ +F
Sbjct: 76 EEMVQKFVEEVLRINYK-----FLMSPIKTEQRQPSMMTRMYIEQRDRLYND---NQVFA 127
Query: 118 KWLQDVFDVPLVIQLTDDEKSLWKNIKPEE---------AKK--LAYENAKAIIACGFKQ 166
K+ +V + ++L ++L ++P + + K +A + C
Sbjct: 128 KY--NVSRLQPYLKLR---QAL-LELRPAKNVLIDGVLGSGKTWVALD------VC---L 172
Query: 167 DSTFIFSDIDFMNPSFYLN---------ILKIQKLVNGTTVKAIFGLKDFDSVGKFSFPA 217
F+LN +L++ + + D S K +
Sbjct: 173 SYKVQ---CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 218 IQAAPSFSSTFPLIFNKNHKVPCLIPCAID--QDP----YFRL-------TRD--VAPKL 262
IQA L+ +K ++ CL+ + Q+ F L TR V L
Sbjct: 230 IQAELRR-----LLKSKPYE-NCLL--VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 263 G---YVKPALIH--STFFP----ALQGANTKMSASDLNS-------------AIFLTDTP 300
+L H T P +L DL A + D
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 301 KQVKN--KVNKHAYSGG-QATVE-----EHRELGGNC-----DVDIAYQYLTFFLEDDDK 347
N VN + ++++ E+R++ I L+ D K
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 348 --LEQIRKNYTSGALLTGELKK--ILIDTITPIVTQHQEAMKGVTEEVLAQYMTPRKLKF 403
+ + +L+ + K+ I I +I + E + ++ Y P+
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 404 D 404
D
Sbjct: 462 D 462
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, rossmann
fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Length = 341
Score = 49.5 bits (119), Expect = 8e-07
Identities = 43/221 (19%), Positives = 74/221 (33%), Gaps = 65/221 (29%)
Query: 209 SVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKL----GY 264
+ G F +P + AA L++ + +P DQ + L RD+A +
Sbjct: 125 NAGLFGYPVLMAADI------LLYGAHQ-----VPVGSDQKQHLELARDIATRFNNIYSP 173
Query: 265 VKPALIHSTFFP--------------ALQGANTKMSASDLN--SAIFLTDTPKQVKNKVN 308
+P F +LQ A KMS SD N + I L + PK + K+
Sbjct: 174 EQP------IFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDPKSIIKKI- 226
Query: 309 KHAY--SGGQATVEEHRE-------LGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGA 359
A + + E L + + Y T +I Y +G
Sbjct: 227 NKAQTDAETPPRIAYDVENKAGIANL-----MGL-YSAAT-----GKTFAEIEAQY-AGV 274
Query: 360 LLTGELKKIL----IDTITPIVTQHQEAM--KGVTEEVLAQ 394
+ G KK + + + P+ ++Q + V+
Sbjct: 275 EMYGPFKKDVGEAVVAMLEPVQAEYQRIRNDREYLNSVMRD 315
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid,
structural genomics, niaid, center for structural
genomics infectious diseases; 1.95A {Yersinia pestis}
Length = 346
Score = 48.7 bits (117), Expect = 1e-06
Identities = 42/221 (19%), Positives = 80/221 (36%), Gaps = 61/221 (27%)
Query: 205 KDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGY 264
+ + G F +P + AA L++ N +P DQ + L+RD+A +
Sbjct: 130 AENINAGLFDYPVLMAADI------LLYQTNQ-----VPVGEDQKQHLELSRDIASRFNN 178
Query: 265 VKPALIHSTFFP--------------ALQGANTKMSASDLN--SAIFLTDTPKQVKNKVN 308
++ F +LQ KMS SD N + I L + PK V K+
Sbjct: 179 -----LYGDIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKSVVKKI- 232
Query: 309 KHAY--SGGQATVEEHRE-------LGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGA 359
K A S A + E L +DI +T + ++ +
Sbjct: 233 KRAMTDSDEPALIRYDVEKKAGVSNL-----LDI-LSGVT-----GQSIPELEAQF--TG 279
Query: 360 LLTGELKKIL----IDTITPIVTQHQEAM--KGVTEEVLAQ 394
+ G LK + ++ + +++ + + ++V+ +
Sbjct: 280 QMYGHLKGAVADAVSGMLSELQERYRTYREDEALLQDVMRE 320
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group
I intron; HET: TYR; 1.95A {Neurospora crassa} PDB:
2rkj_A
Length = 392
Score = 48.1 bits (115), Expect = 3e-06
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 55 ARFEKVTNKKVHHLLR----RGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGH 110
AR E + K + RG + + + Y G P++ S+H+GH
Sbjct: 23 ARAEAIKKGKKQNTWDLFEERGYVKDTAGTKEHIAELMRTRRIGAYVGIDPTAPSLHVGH 82
Query: 111 LIPFMFTKWLQ 121
L+P M W+
Sbjct: 83 LLPLMPLFWMY 93
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA
synthetase, tyrrs, ligase, tyrosine, RNA-binding,
ATP-binding; 2.9A {Mycobacterium tuberculosis}
Length = 432
Score = 47.6 bits (114), Expect = 4e-06
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 68 LLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQD 122
L RG+ D+ ++ ++G P +Y G P++ S+H GHL+P + + Q
Sbjct: 9 LSWRGLIAQSTDLDTLAAEAQRG-PMTVYAGFDPTAPSLHAGHLVPLLTLRRFQR 62
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; HET: AZY; 1.80A {Escherichia
coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Length = 322
Score = 46.4 bits (111), Expect = 8e-06
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 68 LLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQD 122
L RG+ D ++ QG P L G P++DS+HLGHL+P + K Q
Sbjct: 10 LQERGLVAQVTDEEALAERLAQG-PIALVCGFDPTADSLHLGHLVPLLCLKRFQQ 63
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS,
induced FIT, ligase; HET: TYM; 1.72A {Geobacillus
stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A*
1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A*
1d2r_A 3u1v_A
Length = 328
Score = 46.4 bits (111), Expect = 8e-06
Identities = 48/214 (22%), Positives = 82/214 (38%), Gaps = 58/214 (27%)
Query: 209 SVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGYVKPA 268
S G ++P + AA L++N + +P DQ + LTRD+A +
Sbjct: 119 SAGLLTYPPLMAADI------LLYNTDI-----VPVGEDQKQHIELTRDLAERFNK---- 163
Query: 269 LIHSTFFP--------------ALQGANTKMSASDLN--SAIFLTDTPKQVKNKVNKHAY 312
+ F +L KMS SD N + I L D K ++ K+ K A
Sbjct: 164 -RYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKI-KSAV 221
Query: 313 SGGQATVEEHRE-------LGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGEL 365
+ + T+ +E L ++I Y L+ +E++ + Y G
Sbjct: 222 TDSEGTIRYDKEAKPGISNL-----LNI-YSTLS-----GQSIEELERQY--EGKGYGVF 268
Query: 366 KKIL----IDTITPIVTQHQEAMK-GVTEEVLAQ 394
K L I+T+ PI ++ M+ + VL +
Sbjct: 269 KADLAQVVIETLRPIQERYHHWMESEELDRVLDE 302
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis,
translation, class I tRNA synth rossman fold, high
motif, KMSKS motif; 2.80A {Bacillus subtilis}
Length = 388
Score = 46.1 bits (110), Expect = 1e-05
Identities = 45/214 (21%), Positives = 82/214 (38%), Gaps = 58/214 (27%)
Query: 209 SVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGYVKPA 268
G ++P + AA L++ + +P DQ + LTR++A +
Sbjct: 153 VSGLLTYPPLMAADI------LLYGTDL-----VPPGEDQKQHLELTRNLAERFNK---- 197
Query: 269 LIHSTFFP--------------ALQGANTKMSASDLN--SAIFLTDTPKQVKNKVNKHAY 312
++ F +L KMS SD N + I L D PKQ++ K+ K A
Sbjct: 198 -KYNDIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKI-KSAV 255
Query: 313 SGGQATVEEHRE-------LGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGEL 365
+ + V+ +E L + I Y L + +E++ Y GE
Sbjct: 256 TDSEGIVKFDKENKPGVSNL-----LTI-YSILG-----NTTIEELEAKY--EGKGYGEF 302
Query: 366 KKIL----IDTITPIVTQHQEAMK-GVTEEVLAQ 394
K L ++ + PI ++ E ++ + +L +
Sbjct: 303 KGDLAEVVVNALKPIQDRYYELIESEELDRILDE 336
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design,
ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP:
c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Length = 420
Score = 45.6 bits (109), Expect = 1e-05
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 61 TNKKVHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWL 120
TN + L RG+ + D I +L + LY G P++DS+H+GHL+PF+ +
Sbjct: 2 TNVLIEDLKWRGLIYQQTDEQGIEDLLNKE-QVTLYCGADPTADSLHIGHLLPFLTLRRF 60
Query: 121 QD 122
Q+
Sbjct: 61 QE 62
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase,
structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma
pneumoniae}
Length = 348
Score = 45.3 bits (108), Expect = 2e-05
Identities = 38/217 (17%), Positives = 68/217 (31%), Gaps = 56/217 (25%)
Query: 209 SVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGYVKPA 268
G ++PA+ A L++ + +P DQ + LTRD+A ++
Sbjct: 129 PTGLLTYPALMAGDI------LLYQPDI-----VPVGNDQKQHLELTRDLAQRIQK---- 173
Query: 269 LIHSTFFP--------------ALQGANTKMSASDLN--SAIFLTDTPKQVKNKVNKHAY 312
L KMS S N I+L D + V K+ + A
Sbjct: 174 -KFKLKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKI-RQAT 231
Query: 313 SGGQATVEEHRE-----------LGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALL 361
+ + + L + Q LT L +D + K+Y
Sbjct: 232 TDSFNKIRFASKTQPGVTNMLTILKALLKEPVN-QSLTNQLGNDLEAYFSTKSY------ 284
Query: 362 TGELKKIL----IDTITPIVTQHQEAMKGVTEEVLAQ 394
+LK L ++ + I + ++ + L
Sbjct: 285 -LDLKNALTEATVNLLVNIQRKREQISREQVFNCLQA 320
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET:
TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1
d.66.1.4 PDB: 1h3e_A*
Length = 432
Score = 45.1 bits (107), Expect = 2e-05
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 68 LLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQD 122
LL+RG + + L ++G+P + G P+ +HLGH + + Q+
Sbjct: 14 LLKRGAEEIVPEEELLAKL-KEGRPLTVKLGADPTRPDLHLGHAVVLRKMRQFQE 67
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus
stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E*
1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Length = 419
Score = 44.9 bits (107), Expect = 3e-05
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 68 LLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQD 122
L RG+ D + L + LY G P++DS+H+GHL + + Q
Sbjct: 7 LQWRGLVNQTTDEDGLRKLLNEE-RVTLYCGFDPTADSLHIGHLATILTMRRFQQ 60
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase,
protein-substrate complex, ATP-BI ligase, mitochondrion,
nucleotide-binding, protein biosynth; HET: YSA; 2.20A
{Homo sapiens} PDB: 3zxi_A*
Length = 356
Score = 44.6 bits (106), Expect = 3e-05
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 12/79 (15%)
Query: 45 GSSKIDDELIAR--FEKVTNKKVHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPS 102
G+ + AR F+ + ++ + + P +Y G P+
Sbjct: 7 GAQGLLAAQKARGLFKDFFPETGTK----------IELPELFDRGTASFPQTIYCGFDPT 56
Query: 103 SDSMHLGHLIPFMFTKWLQ 121
+DS+H+GHL+ + LQ
Sbjct: 57 ADSLHVGHLLALLGLFHLQ 75
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 2e-04
Identities = 50/277 (18%), Positives = 87/277 (31%), Gaps = 96/277 (34%)
Query: 120 LQDVFDVP-----LVIQLTDD-EKSLWKNIKPEEAKKLAYEN---AKAIIACGFKQDSTF 170
L+ V VP + QL + K L PE + A ++ A + F +
Sbjct: 16 LEHVLLVPTASFFIASQLQEQFNKIL-----PEPTEGFAADDEPTTPAELVGKFLG---Y 67
Query: 171 IFSDIDFMNPSFYLNILKIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPL 230
+ S ++ + +L + L +F++ + L
Sbjct: 68 VSSLVEPSKVGQFDQVLNL-------------CLTEFEN-----------------CY-L 96
Query: 231 IFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDL 290
N H + +L ++ L K LI + A A
Sbjct: 97 EGNDIHALAA------------KLLQENDTTLVKTK-ELI-KNYITARIMAKRPFD-KKS 141
Query: 291 NSAIFLTDTPKQVKNKVNKHAYS--GGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKL 348
NSA+F + V N + GGQ GN D Y
Sbjct: 142 NSALF-----RAVGEG-NAQLVAIFGGQ----------GNTDD-----YF---------- 170
Query: 349 EQIRKNYTSGALLTGELKKILIDTITPIVTQHQEAMK 385
E++R Y + +L G+L K +T++ ++ +A K
Sbjct: 171 EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK 207
Score = 40.0 bits (93), Expect = 0.001
Identities = 67/395 (16%), Positives = 119/395 (30%), Gaps = 150/395 (37%)
Query: 9 TEPAPTVD-GEDDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARF--------EK 59
P PT DD +P ++ EL+ +F E
Sbjct: 40 ILPEPTEGFAADD--EP---------------------TTPA--ELVGKFLGYVSSLVEP 74
Query: 60 VTNKKVHHLLRRGI------FFSHRDMHS-------------------ILNLYE----QG 90
+ +L + + D+H+ I N
Sbjct: 75 SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAK 134
Query: 91 KPF--------F---------LYT---GRGPSSDSMHLGHLIPFMFTKWLQDVFDV--PL 128
+PF F L G+G + D F + L+D++ L
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD--------YF---EELRDLYQTYHVL 183
Query: 129 VIQLTDD-EKSLWKNIK-PEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMN--P-SF- 182
V L ++L + I+ +A+K+ + I+ +T D D++ P S
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKV-FTQGLNILEWLENPSNT---PDKDYLLSIPISCP 239
Query: 183 ---------YLNILKIQKLVNGTTVKAIFGLKDFDSVGK--FSFPAIQAAPSFSSTFPLI 231
Y+ K+ G + G + + AI S+ S
Sbjct: 240 LIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT---GHSQGLVTAVAIAETDSWES----- 291
Query: 232 FNKNHKVPCLIPCAIDQDPYFRL-TR--DVAPKLGYVKPALIHSTFFPALQGANTKM-SA 287
F + + AI F + R + P + P+++ + +G + M S
Sbjct: 292 FFVS------VRKAITV--LFFIGVRCYEAYPNT-SLPPSILEDS-LENNEGVPSPMLSI 341
Query: 288 SDLNSAIFLTDTPKQVK---NKVNKHAYSGGQATV 319
S+L T +QV+ NK N H +G Q +
Sbjct: 342 SNL--------TQEQVQDYVNKTNSHLPAGKQVEI 368
Score = 34.3 bits (78), Expect = 0.090
Identities = 38/316 (12%), Positives = 80/316 (25%), Gaps = 127/316 (40%)
Query: 85 NLYEQGKPF---FLYT--------GRGPSSDSMHLGHLIPFMFTKWLQDVFDVP----LV 129
+LY+ + R + + +WL++ + P L+
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL--EWLENPSNTPDKDYLL 232
Query: 130 --------IQLTD------DEKSLWKNIKPEEAKKL---AYENAKAIIACGFKQDSTFIF 172
I + K L P E + A +++ ++ + I
Sbjct: 233 SIPISCPLIGVIQLAHYVVTAKLL--GFTPGELRSYLKGATGHSQGLVT------AVAIA 284
Query: 173 SDIDFMNPSFYLNILKIQKLVNGTTVKAIF--GLKDFDSVGKFSFPAI---------QAA 221
+ SF++++ K + +F G++ +++ S P +
Sbjct: 285 ETDSW--ESFFVSVRKA--------ITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 222 PS---------FSSTFPLIFNKNHKVPC-------LI----------------------- 242
PS + N +P L+
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR 394
Query: 243 ----PCAIDQD--PYFRLTRDVAPKLG-------------YVKPALIHSTFFPALQGANT 283
P +DQ P+ + K + PA L N
Sbjct: 395 KAKAPSGLDQSRIPF----SERKLKFSNRFLPVASPFHSHLLVPAS--DLINKDLVKNNV 448
Query: 284 KMSASDLNSAIFLTDT 299
+A D+ ++ T
Sbjct: 449 SFNAKDIQIPVYDTFD 464
Score = 31.2 bits (70), Expect = 0.76
Identities = 32/149 (21%), Positives = 52/149 (34%), Gaps = 49/149 (32%)
Query: 279 QGANTK-MSASDL--NSAIFLTDTPKQVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAY 335
QG+ + M DL S + V N+ + H ++ G +DI
Sbjct: 1624 QGSQEQGM-GMDLYKTSKAA-----QDVWNRADNHF-----------KDTYGFSILDIVI 1666
Query: 336 QY---LTFFLEDDDKLEQIRKNYTS--------GALLTGELKKILIDTITPIV------- 377
LT +K ++IR+NY++ G L T ++ K + + T
Sbjct: 1667 NNPVNLTI-HFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL 1725
Query: 378 ---TQH-QEAMKGVTEEVLAQYMTPRKLK 402
TQ Q A+ E A + LK
Sbjct: 1726 LSATQFTQPAL--TLMEK-AAF---EDLK 1748
Score = 29.6 bits (66), Expect = 2.5
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 20/75 (26%)
Query: 10 EPAPTVDGEDDVVDPWNVTSKSM--------TGVDYDKLIKKFGSSKIDDELI------- 54
PA + +D V + + +K + G D L S I + ++
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVL-----SGSISERIVDCIIRLP 487
Query: 55 ARFEKVTNKKVHHLL 69
++E T K H+L
Sbjct: 488 VKWETTTQFKATHIL 502
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE
membrane protein, transport protein; HET: BNG; 2.78A
{Escherichia coli}
Length = 429
Score = 28.7 bits (65), Expect = 3.6
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 192 LVNGTTVKAIFGLKDFDSVGK---FSFPAIQAAPSFSSTFPLIF 232
++ G + G+ D + F+ P + P F L
Sbjct: 189 VLVGYALSFAMGIVDTTPIINAHWFALPTLY-TPRFEWFAILTI 231
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A
{Mus musculus}
Length = 540
Score = 28.7 bits (63), Expect = 3.7
Identities = 15/135 (11%), Positives = 37/135 (27%), Gaps = 10/135 (7%)
Query: 21 VVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSHRDM 80
+ +T +T + ++ E + + H+
Sbjct: 217 ALRTCQLTLNGLTADEV--------GDCLNVEAQVSIGAQASVSSEYKACEEKKKQHKMA 268
Query: 81 HSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLW 140
S Y + L + D + P F+ W + P ++ + + L
Sbjct: 269 TSFHQTYRERHVEVLGGPLDSTHDLLFGNQATPEQFSTWTASLPSNPGLVDYS--LEPLH 326
Query: 141 KNIKPEEAKKLAYEN 155
++ + K+ A
Sbjct: 327 TLLEEQNPKREALRQ 341
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA, project on protein structural and
functional analyses; HET: FAD; 2.10A {Thermus
thermophilus}
Length = 335
Score = 28.7 bits (65), Expect = 3.7
Identities = 16/88 (18%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 286 SASDLNSAIFLTDTPKQVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDD 345
SA D A+ L DT +++ + + +A+V+E + +++ Y +E D
Sbjct: 163 SAVD--WALNLLDTARRITLIHRRPQFRAHEASVKELMKAHEEGRLEVLTPYELRRVEGD 220
Query: 346 DKLEQIRKNYTSGALLTGELKKILIDTI 373
+++ + T E + +D +
Sbjct: 221 ERVRWAVVFHNQ----TQEELALEVDAV 244
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 6.0
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 4/25 (16%)
Query: 136 EKSLWKNIKPEEAKKLAYENAKAII 160
+ SL K + A LA KA +
Sbjct: 26 QASL-KLYADDSAPALAI---KATM 46
>2gnx_A Hypothetical protein; structural genomics, protein structure
initiative, PSI, center for eukaryotic structural
genomics, CESG, unknown function; 2.45A {Mus musculus}
SCOP: a.246.3.1 d.109.3.1
Length = 344
Score = 27.9 bits (61), Expect = 6.3
Identities = 26/140 (18%), Positives = 46/140 (32%), Gaps = 12/140 (8%)
Query: 178 MNPSFYLNILKIQKLVNGTTVKAIF---GLKDFDSVGKFSFPAIQAAPSFSSTFPLIFN- 233
NP + I + + V IF G + F G + + AP +P + +
Sbjct: 192 ANPDLFGKISSFIRKYDAANVSLIFDNRGSESFQGHGYHHPHSYREAPKGVDQYPAVVSL 251
Query: 234 KNHKVPCLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFF-----PALQGA---NTKM 285
+ + P I + K+ + + ST+F P +K
Sbjct: 252 PSDRPVMHWPNVIMIMTDRASDLNSLEKVVHFYDDKVQSTYFLTRPEPHFTIVVIFESKK 311
Query: 286 SASDLNSAIFLTDTPKQVKN 305
S D + FL + +KN
Sbjct: 312 SERDSHFISFLNELSLALKN 331
>2g6t_A Uncharacterized protein, homolog HI1244 from haemophilus
influenzae; hypothetical protein, structural genomics,
PSI; 3.00A {Clostridium acetobutylicum} SCOP: c.147.1.1
Length = 306
Score = 27.8 bits (61), Expect = 6.7
Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 14/94 (14%)
Query: 35 VDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSHRDM--HSILNLYEQGKP 92
++ L K +++L+ RF+ + K + F + M S+
Sbjct: 210 INKKNLFVKMLIKDDNEKLVKRFDNLPYK-------NKVCFHPKPMKYKSVAFFPRYIWR 262
Query: 93 FFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDV 126
Y R +S+ WL+ D+
Sbjct: 263 CINYAARTSNSNLEQYTMD-----MSWLEKSCDI 291
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.406
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,279,841
Number of extensions: 384773
Number of successful extensions: 1038
Number of sequences better than 10.0: 1
Number of HSP's gapped: 951
Number of HSP's successfully gapped: 64
Length of query: 405
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 309
Effective length of database: 4,021,377
Effective search space: 1242605493
Effective search space used: 1242605493
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.1 bits)