RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13709
(405 letters)
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 386
Score = 365 bits (938), Expect = e-125
Identities = 260/385 (67%), Positives = 315/385 (81%), Gaps = 2/385 (0%)
Query: 19 DDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSHR 78
+D VDPW V + S G+DYDKLI +FGSSKID ELI R E+ T ++ HH LRRGIFFSHR
Sbjct: 1 EDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHR 60
Query: 79 DMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKS 138
DM+ +L+ YE KPF+LYTGRGPSS++MH+GHLIPF+FTKWLQDVF+VPLVIQ+TDDEK
Sbjct: 61 DMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKY 120
Query: 139 LWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMN--PSFYLNILKIQKLVNGT 196
LWK++ ++A A ENAK IIACGF + TFIFSD+D+M FY N++KIQK V
Sbjct: 121 LWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFN 180
Query: 197 TVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTR 256
VK IFG D D +GK SFPAIQAAPSFS++FP IF + CLIPCAIDQDPYFR+TR
Sbjct: 181 QVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTR 240
Query: 257 DVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKNKVNKHAYSGGQ 316
DVAP++GY KPAL+HSTFFPALQGA TKMSASD NS+IFLTDT KQ+K KVNKHA+SGG+
Sbjct: 241 DVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGR 300
Query: 317 ATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPI 376
T+EEHR+ GGNCDVD+++ YLTFFLEDDDKLEQIRK+YTSGA+LTGELKK LI+ + P+
Sbjct: 301 DTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPL 360
Query: 377 VTQHQEAMKGVTEEVLAQYMTPRKL 401
+ +HQ K VT+E++ ++MTPRKL
Sbjct: 361 IAEHQARRKEVTDEIVKEFMTPRKL 385
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 339
Score = 132 bits (332), Expect = 8e-36
Identities = 52/341 (15%), Positives = 100/341 (29%), Gaps = 43/341 (12%)
Query: 66 HHLLRRGI--FFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDV 123
HL+ R + + IL + +Y G + H+ + +P
Sbjct: 8 LHLITRNLQEVLGEEKLKEILK----ERELKIYWGTATTGK-PHVAYFVPMSKIADFLK- 61
Query: 124 FDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPSFY 183
+ I D L P E +L + +I + + +
Sbjct: 62 AGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQ 121
Query: 184 LNIL----------KIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFN 233
L+ + + + + + + +P +QA
Sbjct: 122 LSKEYTLDVYRLSSVVTQHDSKKAGAEVVKQVEHPLLSGLLYPGLQALDEE--------- 172
Query: 234 KNHKVPCLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSA 293
+ IDQ F P LGY K + + P L +KMS+S+ S
Sbjct: 173 --YLKVDAQFGGIDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLT--GSKMSSSEEESK 228
Query: 294 IFLTDTPKQVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDK------ 347
I L D + VK K+ K G + + F + D+K
Sbjct: 229 IDLLDRKEDVKKKLKKAFCEPGNVENNGVLSFIKH---VLFPLKSEFVILRDEKWGGNKT 285
Query: 348 ---LEQIRKNYTSGALLTGELKKILIDTITPIVTQHQEAMK 385
+ K++ + + G+LK + + ++ +E
Sbjct: 286 YTAYVDLEKDFAAEVVHPGDLKNSVEVALNKLLDPIREKFN 326
>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus
stearothermophilus, nca 1503 [TaxId: 1422]}
Length = 319
Score = 125 bits (314), Expect = 2e-33
Identities = 50/329 (15%), Positives = 97/329 (29%), Gaps = 26/329 (7%)
Query: 65 VHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVF 124
+ L RG+ D + L + LY G P++DS+H+GHL + + Q
Sbjct: 4 LAELQWRGLVNQTTDEDGLRKL-LNEERVTLYCGFDPTADSLHIGHLATILTMRRFQQAG 62
Query: 125 DVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPSFYL 184
P+ + + K E A E +A A +Q F+ + D
Sbjct: 63 HRPIALVGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGRFLDFEADGNPAKIKN 122
Query: 185 NILKIQKLV-------NGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHK 237
N I L G + + + S+ F + ++
Sbjct: 123 NYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQSRIETGISFTEFSYMMLQAYDFLRLYE 182
Query: 238 VPCLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLT 297
D + +T + A P + A+ + I+L
Sbjct: 183 TEGCRLQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADGTKFGKTESGTIWLD 242
Query: 298 DTPKQVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFF-LEDDDKLEQIRKNYT 356
+ + E + N D +YL +F +++E + +
Sbjct: 243 KE----------------KTSPYEFYQFWINTDDRDVIRYLKYFTFLSKEEIEALEQELR 286
Query: 357 SGALLTGELKKILIDTITPIVTQHQEAMK 385
+K L + +T +V + +
Sbjct: 287 EAPEKR-AAQKTLAEEVTKLVHGEEALRQ 314
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 323
Score = 115 bits (289), Expect = 8e-30
Identities = 49/332 (14%), Positives = 108/332 (32%), Gaps = 25/332 (7%)
Query: 61 TNKKVHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWL 120
TN + L RG+ + D I +L + LY G P++DS+H+GHL+PF+ +
Sbjct: 1 TNVLIEDLKWRGLIYQQTDEQGIEDL-LNKEQVTLYCGADPTADSLHIGHLLPFLTLRRF 59
Query: 121 QDV--FDVPLVIQLTD-DEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDF 177
Q+ + L+ T K+ + + + I+ F
Sbjct: 60 QEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMHNIFEFGTDHGAV 119
Query: 178 M--NPSFYLNILKIQKL-VNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNK 234
+ N + I I L G V + L + +++ + F
Sbjct: 120 LVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRLEHGISYTEFTYTILQAIDFGH 179
Query: 235 NHKVPCLIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAI 294
++ D + +T + + P + ++ K + A+
Sbjct: 180 LNRELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAV 239
Query: 295 FLTDTPKQVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFF-LEDDDKLEQIRK 353
+L + + E + N + ++L +F ++++++ +
Sbjct: 240 WLDAE----------------KTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEEIDRLEQ 283
Query: 354 NYTSGALLTGELKKILIDTITPIVTQHQEAMK 385
+ L E +K L + +T +
Sbjct: 284 SKNEAPHLR-EAQKTLAEEVTKFIHGEDALND 314
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus
thermophilus [TaxId: 274]}
Length = 343
Score = 113 bits (283), Expect = 5e-29
Identities = 47/331 (14%), Positives = 103/331 (31%), Gaps = 35/331 (10%)
Query: 61 TNKKVHHLLRRGIF--FSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTK 118
T ++ LL+RG + +L ++G+P + G P+ +HLGH + +
Sbjct: 3 TPEEALALLKRGAEEIVPEEE---LLAKLKEGRPLTVKLGADPTRPDLHLGHAVVLRKMR 59
Query: 119 WLQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFM 178
Q++ ++I + + + L E + Q + +
Sbjct: 60 QFQELGHKVVLIIGDFTGMIGDPSGRSKTRPPLTLEETRENAKTYVAQAGKILRQEPHLF 119
Query: 179 ---NPSFYLNILKIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKN 235
S +L L +++V T++ + + + + K I + +
Sbjct: 120 ELRYNSEWLEGLTFKEVVRLTSLMTVAQMLEREDFKKRYEAGIPISLHELLYPFAQAYDS 179
Query: 236 HKVPC-LIPCAIDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAI 294
+ + DQ + R+V G L G + + L++ I
Sbjct: 180 VAIRADVEMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLDG--REKMSKSLDNYI 237
Query: 295 FLTDTPKQVKNKVNKHAYSGGQATVEEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKN 354
LT+ P+ + K+ + Y D + E+I
Sbjct: 238 GLTEPPEAMFKKLM-------------------RVPDPLLPSYFRLL--TDLEEEEIEAL 276
Query: 355 YTSGALLTGELKKILIDTITPIVTQHQEAMK 385
+G + ++L +T Q +
Sbjct: 277 LKAGPV---PAHRVLARLLTAAYALPQIPPR 304
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 306
Score = 97.4 bits (241), Expect = 2e-23
Identities = 48/322 (14%), Positives = 110/322 (34%), Gaps = 26/322 (8%)
Query: 68 LLRRGI--FFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFD 125
+++R S ++ +L Y G PS +HLGH + LQ+
Sbjct: 6 MIKRNTSEIISEEELREVLK----KDEKSAYIGFEPSGK-IHLGHYLQIKKMIDLQNA-G 59
Query: 126 VPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPSFYLN 185
++I L D L + + +E +K+ N K A G K + + + +
Sbjct: 60 FDIIILLADLHAYLNQKGELDEIRKIGDYNKKVFEAMGLKAKYVYGSEFQLDKDYTLNVY 119
Query: 186 ILKIQKLVNGTTVKAIFGLKDFDSVGKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCA 245
L ++ + ++ + + + ++ +
Sbjct: 120 RLALKTTLKRARRSMELIAREDE---------NPKVAEVIYPIMQVNDIHYLGVDVAVGG 170
Query: 246 IDQDPYFRLTRDVAPKLGYVKPALIHSTFFPALQGANTKMSASDLNSAIFLTDTPKQVKN 305
++Q L R++ K IH+ L G +S + I + D+P++++
Sbjct: 171 MEQRKIHMLAREL----LPKKVVCIHNPVLTGLDG--EGKMSSSKGNFIAVDDSPEEIRA 224
Query: 306 KVNKHAYSGGQATVEEHRELGGN-CDVDIAYQYLTFFLED--DDKLEQIRKNYTSGALLT 362
K+ K G E+ + + + F D + E++ + + L
Sbjct: 225 KIKKAYCPAGVVEGNPIMEIAKYFLEYPLTIKRPEKFGGDLTVNSYEELESLFKNKELHP 284
Query: 363 GELKKILIDTITPIVTQHQEAM 384
+LK + + + I+ ++ +
Sbjct: 285 MDLKNAVAEELIKILEPIRKRL 306
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS)
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 326
Score = 90.2 bits (223), Expect = 8e-21
Identities = 51/306 (16%), Positives = 98/306 (32%), Gaps = 36/306 (11%)
Query: 95 LYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYE 154
+++G PS + +G+ I ++++ + + D ++ P E ++
Sbjct: 4 IFSGIQPSG-VITIGNYIG-ALRQFVELQHEYNCYFCIVDQH-AITVWQDPHELRQNIRR 60
Query: 155 NAKAIIACGFKQDSTFIFSDIDFMNPSFYLNIL----KIQKLVNGTTVKAIFGLKDFDSV 210
A +A G +F + + +L I +L T K K+ S
Sbjct: 61 LAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAGKEAVSA 120
Query: 211 GKFSFPAIQAAPSFSSTFPLIFNKNHKVPCLIPCAIDQDPYFRLTRDVAPKLGYVKPALI 270
G ++P + AA ++P DQ + LTRD+A + L
Sbjct: 121 GLLTYPPLMAADIL-----------LYNTDIVPVGEDQKQHIELTRDLAERFNKRYGELF 169
Query: 271 HSTFFPALQGANTKMSASD-----------LNSAIFLTDTPKQVKNKVNKHAYSGGQATV 319
+ MS D + I L D K ++ K K A + + T+
Sbjct: 170 TIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKK-IKSAVTDSEGTI 228
Query: 320 EEHRELGGNCDVDIAYQYLTFFLEDDDKLEQIRKNYTSGALLTGELKKILIDTITPIVTQ 379
+E + + +E++ + Y G K L + +
Sbjct: 229 RYDKE--AKPGISNLLNIYSTL--SGQSIEELERQYEGKGY--GVFKADLAQVVIETLRP 282
Query: 380 HQEAMK 385
QE
Sbjct: 283 IQERYH 288
>d1atga_ c.94.1.1 (A:) Molybdate-binding protein, ModA {Azotobacter
vinelandii [TaxId: 354]}
Length = 231
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/106 (12%), Positives = 29/106 (27%), Gaps = 8/106 (7%)
Query: 51 DELIARFEKVTNKKVHHLLRRGIFFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGH 110
++L +F K T V S + G P+ ++ S
Sbjct: 15 EQLAGQFAKQTGHAVV--------ISSGSSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQ 66
Query: 111 LIPFMFTKWLQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENA 156
+++ + + L + K + + +A N
Sbjct: 67 GFALPGSRFTYAIGKLVLWSAKPGLVDNQGKVLAGNGWRHIAISNP 112
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 27.6 bits (60), Expect = 2.8
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 81 HSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVF 124
H L + + F L+ G ++ ++H+GH K L+D
Sbjct: 38 HKALEKNKGNETFILHDGPPYANGNLHMGHA----LNKILKDFI 77
>d1q15a2 d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectobacterium
carotovorum [TaxId: 554]}
Length = 204
Score = 27.2 bits (60), Expect = 2.9
Identities = 13/117 (11%), Positives = 28/117 (23%), Gaps = 8/117 (6%)
Query: 74 FFSHRDMHSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDV-PLVIQL 132
+ D + L+ + L G P + + P+ +
Sbjct: 75 AYLANDAELLALLFTRLGANALALAEGDFC----FFIDEPNGELTVITESRGFSPVHVVQ 130
Query: 133 TDDE---KSLWKNIKPEEAKKLAYENAKAIIACGFKQDSTFIFSDIDFMNPSFYLNI 186
SL E L +E + + D+ + + P +
Sbjct: 131 GKKAWMTNSLKLVTAAEGEGALWFEEEALVCQSLMRADTYTPVKNAQRLKPGAVHVL 187
>d2g6ta1 c.147.1.1 (A:1-305) Hypothetical protein CAC2185
{Clostridium acetobutylicum [TaxId: 1488]}
Length = 305
Score = 27.1 bits (60), Expect = 3.7
Identities = 17/111 (15%), Positives = 35/111 (31%), Gaps = 17/111 (15%)
Query: 18 EDDVVDPWNVTSKSMTGVDYDKLIKKFGSSKIDDELIARFEKVTNKKVHHLLRRGIFFSH 77
+ + W+ + + L K +++L+ RF+ + K + F
Sbjct: 196 FAEAKNDWDERKTRI---NKKNLFVKMLIKDDNEKLVKRFDNLPYK-------NKVCFHP 245
Query: 78 RDM--HSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVFDV 126
+ M S+ Y R +S+ M WL+ D+
Sbjct: 246 KPMKYKSVAFFPRYIWRCINYAARTSNSNLEQYT-----MDMSWLEKSCDI 291
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
(IleRS) {Thermus thermophilus [TaxId: 274]}
Length = 452
Score = 26.8 bits (58), Expect = 6.0
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 81 HSILNLYEQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVF 124
+ + G + +Y G ++ H+GH + +D+F
Sbjct: 28 QKSVENRKGGPRYTVYEGPPTANGLPHVGHA----QARSYKDLF 67
>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella
enterica [TaxId: 28901]}
Length = 320
Score = 26.3 bits (57), Expect = 7.7
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 306 KVNKHAYSGGQATVEEHRELGGNCDVD 332
+ HA G+ +E E+ G V
Sbjct: 268 LIEGHACIQGEILIERQVEISGRAAVI 294
>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide
dehydrogenase, Sud) {Wolinella succinogenes [TaxId:
844]}
Length = 137
Score = 25.6 bits (55), Expect = 8.1
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 131 QLTDDEKSLWKNIKPEEAKKLAYENAKAII 160
K+ + P++A KL EN +
Sbjct: 13 AQVKAAKADMVMLSPKDAYKLLQENPDITL 42
>d1j6oa_ c.1.9.12 (A:) Hypothetical protein TM0667 {Thermotoga
maritima [TaxId: 2336]}
Length = 260
Score = 26.0 bits (56), Expect = 8.8
Identities = 8/47 (17%), Positives = 19/47 (40%)
Query: 113 PFMFTKWLQDVFDVPLVIQLTDDEKSLWKNIKPEEAKKLAYENAKAI 159
PF+ + + + P ++ + S + + + ENA+ I
Sbjct: 208 PFLPPQPFRGKRNEPKYLKYVVETISQVLGVPEAKVDEATTENARRI 254
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS)
{Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 26.0 bits (56), Expect = 8.9
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 88 EQGKPFFLYTGRGPSSDSMHLGHLIPFMFTKWLQDVF 124
PF ++ + S+H+GH LQD
Sbjct: 31 SGKPPFVIFMPPPNVTGSLHMGHA----LDNSLQDAL 63
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.406
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,528,786
Number of extensions: 73485
Number of successful extensions: 238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 25
Length of query: 405
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 318
Effective length of database: 1,213,086
Effective search space: 385761348
Effective search space used: 385761348
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.8 bits)