BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1371
(244 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5E9H5|BCS1_BOVIN Mitochondrial chaperone BCS1 OS=Bos taurus GN=BCS1L PE=2 SV=1
Length = 419
Score = 226 bits (575), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 111/177 (62%), Positives = 143/177 (80%), Gaps = 2/177 (1%)
Query: 54 MELIDSLSTNPYFGAGFGLFGLGAGA--AILRKARTLALKQYEGKTVMYTALGSEWRPFG 111
M++ID + P+ F G IL +AR LAL+Q EGKTVMYTA+GSEWRPFG
Sbjct: 121 MQMIDLQTGTPWESVTFTALGTDRKVFFNILEEARELALQQEEGKTVMYTAVGSEWRPFG 180
Query: 112 HPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFI 171
+P+RRRPLNSVVL+ GV +RI+ DI++F+ +P WY+DRGIPYRRGYLLYGPPGCGKSSFI
Sbjct: 181 YPRRRRPLNSVVLEQGVTERIVRDIREFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFI 240
Query: 172 TALAGELEFGICVLNLSERGLTDDRLNHLLSVAPQNSIILLEDIDAAFVTREESSQG 228
TALAGEL+ IC+L+L++ L+DDRLNHLLSVAPQ S++LLED+DAAF++R+ +++
Sbjct: 241 TALAGELQHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDVDAAFLSRDLAAEN 297
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 1 MPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKG 35
MP + + +L NPYFGAGFGL G+G A+ RKG
Sbjct: 1 MPLSDFVLALKDNPYFGAGFGLVGVGTALALARKG 35
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%)
Query: 51 MPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKARTLAL 90
MP + + +L NPYFGAGFGL G+G A+ RK L L
Sbjct: 1 MPLSDFVLALKDNPYFGAGFGLVGVGTALALARKGAQLGL 40
>sp|Q9Y276|BCS1_HUMAN Mitochondrial chaperone BCS1 OS=Homo sapiens GN=BCS1L PE=1 SV=1
Length = 419
Score = 225 bits (574), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 112/172 (65%), Positives = 139/172 (80%), Gaps = 2/172 (1%)
Query: 54 MELIDSLSTNPYFGAGFGLFGLGAGA--AILRKARTLALKQYEGKTVMYTALGSEWRPFG 111
M++ID + P+ F G IL +AR LAL+Q EGKTVMYTA+GSEWRPFG
Sbjct: 121 MQMIDLQTGTPWESVTFTALGTDRKVFFNILEEARELALQQEEGKTVMYTAVGSEWRPFG 180
Query: 112 HPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFI 171
+P+RRRPLNSVVL G+ADRI+ D+++F+ +P WY DRGIPYRRGYLLYGPPGCGKSSFI
Sbjct: 181 YPRRRRPLNSVVLQQGLADRIVRDVQEFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFI 240
Query: 172 TALAGELEFGICVLNLSERGLTDDRLNHLLSVAPQNSIILLEDIDAAFVTRE 223
TALAGELE IC+L+L++ L+DDRLNHLLSVAPQ S++LLED+DAAF++R+
Sbjct: 241 TALAGELEHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDVDAAFLSRD 292
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 24/35 (68%)
Query: 1 MPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKG 35
MP + I +L NPYFGAGFGL G+G A+ RKG
Sbjct: 1 MPLSDFILALKDNPYFGAGFGLVGVGTALALARKG 35
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 25/40 (62%)
Query: 51 MPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKARTLAL 90
MP + I +L NPYFGAGFGL G+G A+ RK L L
Sbjct: 1 MPLSDFILALKDNPYFGAGFGLVGVGTALALARKGVQLGL 40
>sp|Q9CZP5|BCS1_MOUSE Mitochondrial chaperone BCS1 OS=Mus musculus GN=Bcs1l PE=1 SV=1
Length = 418
Score = 222 bits (566), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 110/172 (63%), Positives = 139/172 (80%), Gaps = 2/172 (1%)
Query: 54 MELIDSLSTNPYFGAGFGLFGLGAGA--AILRKARTLALKQYEGKTVMYTALGSEWRPFG 111
M+++D + P+ F G IL +AR LAL+Q EGKTVMYTA+GSEWR FG
Sbjct: 121 MQMVDLQTGTPWESVTFTALGTDRKVFFNILEEARALALQQEEGKTVMYTAVGSEWRTFG 180
Query: 112 HPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFI 171
+P+RRRPL+SVVL G+ADRI+ DI++F+ +P WY+DRGIPYRRGYLLYGPPGCGKSSFI
Sbjct: 181 YPRRRRPLDSVVLQQGLADRIVKDIREFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFI 240
Query: 172 TALAGELEFGICVLNLSERGLTDDRLNHLLSVAPQNSIILLEDIDAAFVTRE 223
TALAGELE IC+L+L++ L+DDRLNHLLSVAPQ S++LLED+DAAF++R+
Sbjct: 241 TALAGELEHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDVDAAFLSRD 292
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 1 MPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKG 35
MPF + + +L NPYFGAGFGL G+G A+ RKG
Sbjct: 1 MPFSDFVLALKDNPYFGAGFGLVGVGTALAMARKG 35
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 26/40 (65%)
Query: 51 MPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKARTLAL 90
MPF + + +L NPYFGAGFGL G+G A+ RK L L
Sbjct: 1 MPFSDFVLALKDNPYFGAGFGLVGVGTALAMARKGAQLGL 40
>sp|Q7ZV60|BCS1_DANRE Mitochondrial chaperone BCS1 OS=Danio rerio GN=bcs1l PE=2 SV=2
Length = 420
Score = 218 bits (554), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 114/171 (66%), Positives = 141/171 (82%), Gaps = 2/171 (1%)
Query: 55 ELIDSLSTNPYFGAGFGLFGLGAGA--AILRKARTLALKQYEGKTVMYTALGSEWRPFGH 112
+++D + P+ F G IL++AR LALKQ EG+TVMYTA+G+EWRPFG
Sbjct: 122 QMMDLHTGTPWESVTFTALGRDRQTFFNILQEARELALKQEEGRTVMYTAMGAEWRPFGF 181
Query: 113 PKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFIT 172
P+RRRPL+SVVL+SGVA+RI+ D+K+F+ +P WY DRGIPYRRGYLLYGPPGCGKSSFIT
Sbjct: 182 PRRRRPLSSVVLESGVAERIVDDVKEFIGNPKWYTDRGIPYRRGYLLYGPPGCGKSSFIT 241
Query: 173 ALAGELEFGICVLNLSERGLTDDRLNHLLSVAPQNSIILLEDIDAAFVTRE 223
ALAGEL + IC+++LS+R L+DDRLNHLLSVAPQ SIILLED+DAAFV+RE
Sbjct: 242 ALAGELGYSICLMSLSDRSLSDDRLNHLLSVAPQQSIILLEDVDAAFVSRE 292
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 1 MPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKG 35
M + I +L NPYFGAGFGL G+G A+ RKG
Sbjct: 1 MTLSDFIGALKDNPYFGAGFGLVGVGTALAVARKG 35
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 51 MPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRK 84
M + I +L NPYFGAGFGL G+G A+ RK
Sbjct: 1 MTLSDFIGALKDNPYFGAGFGLVGVGTALAVARK 34
>sp|Q7ZTL7|BCS1_XENLA Mitochondrial chaperone BCS1 OS=Xenopus laevis GN=bcs1l PE=2 SV=1
Length = 419
Score = 217 bits (553), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 109/176 (61%), Positives = 138/176 (78%), Gaps = 2/176 (1%)
Query: 55 ELIDSLSTNPYFGAGFGLFGLGAGA--AILRKARTLALKQYEGKTVMYTALGSEWRPFGH 112
++ID + P+ F G IL++AR LALKQ GKTVMY A+G+EWR FG
Sbjct: 122 QMIDLHTGTPWESVTFTALGTNRNIFFNILQEARELALKQQVGKTVMYNAVGAEWRQFGF 181
Query: 113 PKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFIT 172
P+RRRPL+SVVL+ G++++I+ D+K F+ +P WY DRGIPYRRGYLLYGPPGCGKSSFIT
Sbjct: 182 PRRRRPLSSVVLEQGISEKIVQDVKGFIENPKWYSDRGIPYRRGYLLYGPPGCGKSSFIT 241
Query: 173 ALAGELEFGICVLNLSERGLTDDRLNHLLSVAPQNSIILLEDIDAAFVTREESSQG 228
ALAGELE+ IC+++LS+ L+DDRLNHLLSVAPQ SIILLED+DAAFV+R+ + Q
Sbjct: 242 ALAGELEYSICLMSLSDSSLSDDRLNHLLSVAPQQSIILLEDVDAAFVSRDLNKQN 297
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 1 MPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKG 35
MPF + + +L NPYFGAGFGL G+G A+ RKG
Sbjct: 1 MPFADFVAALKDNPYFGAGFGLVGVGTALALTRKG 35
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 51 MPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRK 84
MPF + + +L NPYFGAGFGL G+G A+ RK
Sbjct: 1 MPFADFVAALKDNPYFGAGFGLVGVGTALALTRK 34
>sp|P32839|BCS1_YEAST Mitochondrial chaperone BCS1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BCS1 PE=1 SV=2
Length = 456
Score = 201 bits (510), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 92/147 (62%), Positives = 115/147 (78%)
Query: 81 ILRKARTLALKQYEGKTVMYTALGSEWRPFGHPKRRRPLNSVVLDSGVADRILTDIKQFV 140
IL +A+ +ALK EGKTV+YT+ G EWR FG PK +R L SV+LDSG+ + IL D+ F+
Sbjct: 187 ILNEAKDIALKTTEGKTVIYTSFGPEWRKFGQPKAKRMLPSVILDSGIKEGILDDVYDFM 246
Query: 141 ADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRLNHL 200
+ WY DRGIPYRRGYLLYGPPG GK+SFI ALAGEL++ IC+LNLSE LTDDRLNHL
Sbjct: 247 KNGKWYSDRGIPYRRGYLLYGPPGSGKTSFIQALAGELDYNICILNLSENNLTDDRLNHL 306
Query: 201 LSVAPQNSIILLEDIDAAFVTREESSQ 227
++ P+ SI+LLEDIDAAF R ++ +
Sbjct: 307 MNNMPERSILLLEDIDAAFNKRSQTGE 333
Score = 38.1 bits (87), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 8 DSLSTNPYFGAGFGLFGLGAGAAILRKGKFRPGR 41
D++S NPYF AG GL LG G A+ R G + R
Sbjct: 44 DAMSNNPYFAAGGGLMILGTGLAVARSGIIKASR 77
Score = 34.3 bits (77), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 58 DSLSTNPYFGAGFGLFGLGAGAAILR 83
D++S NPYF AG GL LG G A+ R
Sbjct: 44 DAMSNNPYFAAGGGLMILGTGLAVAR 69
>sp|Q54DY9|BCS1B_DICDI Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum
GN=bcsl1b PE=3 SV=1
Length = 458
Score = 196 bits (498), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 88/154 (57%), Positives = 121/154 (78%), Gaps = 4/154 (2%)
Query: 72 LFGLGAGAAI----LRKARTLALKQYEGKTVMYTALGSEWRPFGHPKRRRPLNSVVLDSG 127
L LG G + + +A+ +AL++ EGKT++YT++G++WR FGHP+R+RP++SV+LD G
Sbjct: 155 LTTLGTGRQVFQNLIEEAKEMALEKEEGKTLIYTSMGTDWRRFGHPRRKRPISSVILDKG 214
Query: 128 VADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNL 187
++ I+ D+K+F+ + WY DRGIPYRRGYLLYGPPG GKSSFITALAGEL+ IC+LNL
Sbjct: 215 KSELIIQDVKKFLNNSDWYNDRGIPYRRGYLLYGPPGTGKSSFITALAGELQLSICILNL 274
Query: 188 SERGLTDDRLNHLLSVAPQNSIILLEDIDAAFVT 221
+ + ++D LN LL+ APQ SIILLEDID+A T
Sbjct: 275 AGKSVSDTSLNQLLATAPQRSIILLEDIDSAIQT 308
Score = 34.3 bits (77), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 5 ELIDSLSTNPYFGAGFGLFGLGAGAAILRKG 35
E I L NP+F AGFGL G+G+ A+ RKG
Sbjct: 22 EPIQPLFENPFFSAGFGLIGVGSILAMGRKG 52
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 55 ELIDSLSTNPYFGAGFGLFGLGAGAAILRKARTLALKQ 92
E I L NP+F AGFGL G+G+ A+ RK A+ Q
Sbjct: 22 EPIQPLFENPFFSAGFGLIGVGSILAMGRKGFQQAMIQ 59
>sp|Q9P6Q3|BCS1_SCHPO Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1
Length = 449
Score = 184 bits (468), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 84/152 (55%), Positives = 111/152 (73%)
Query: 76 GAGAAILRKARTLALKQYEGKTVMYTALGSEWRPFGHPKRRRPLNSVVLDSGVADRILTD 135
G + +L +A+ + KT +YTA +EW+PFGHP+ +R L+SVVL+S V I D
Sbjct: 164 GIFSELLLEAQKFMQSAQKNKTTIYTAWATEWKPFGHPRSKRMLSSVVLESNVKKMITDD 223
Query: 136 IKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDD 195
+ F+ + WY RGIPYRRGYLLYGPPG GK+SF+ ALAGEL++ ICVLNL+E+GLTDD
Sbjct: 224 VHDFLRNSQWYDTRGIPYRRGYLLYGPPGSGKTSFLYALAGELDYDICVLNLAEKGLTDD 283
Query: 196 RLNHLLSVAPQNSIILLEDIDAAFVTREESSQ 227
RLNHLLS P +++LLED+D+AF RE S +
Sbjct: 284 RLNHLLSNVPPKAVVLLEDVDSAFQGRERSGE 315
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 19/26 (73%)
Query: 10 LSTNPYFGAGFGLFGLGAGAAILRKG 35
LS N + GAG GL G GAG AILR+G
Sbjct: 19 LSGNSFLGAGIGLMGFGAGLAILRRG 44
Score = 35.0 bits (79), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 60 LSTNPYFGAGFGLFGLGAGAAILRK 84
LS N + GAG GL G GAG AILR+
Sbjct: 19 LSGNSFLGAGIGLMGFGAGLAILRR 43
>sp|Q54HY8|BCS1A_DICDI Probable mitochondrial chaperone BCS1-A OS=Dictyostelium discoideum
GN=bcs1la PE=3 SV=1
Length = 421
Score = 155 bits (392), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 72/146 (49%), Positives = 105/146 (71%), Gaps = 1/146 (0%)
Query: 81 ILRKARTLALKQYEGKTVMYTALGS-EWRPFGHPKRRRPLNSVVLDSGVADRILTDIKQF 139
+L++A TL+L + GKTV+Y G+ W FG+P+ R L+SV+L + +++ DIK F
Sbjct: 147 LLQEAMTLSLNRDIGKTVIYINGGNGNWERFGNPRSIRSLSSVILADDLKSKLIEDIKSF 206
Query: 140 VADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRLNH 199
+ + +WY +RGIPYRRGYLLYG PG GKSS I A+AGEL IC+++LS + + D ++NH
Sbjct: 207 ITNESWYRNRGIPYRRGYLLYGEPGNGKSSLINAIAGELNLDICIVSLSSKDIDDKQINH 266
Query: 200 LLSVAPQNSIILLEDIDAAFVTREES 225
LL+ AP SI+L+EDIDAAF + ++
Sbjct: 267 LLNNAPPKSILLIEDIDAAFKSHRDN 292
>sp|Q5UPR4|YR776_MIMIV Uncharacterized protein R776 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R776 PE=4 SV=1
Length = 314
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 8/127 (6%)
Query: 98 VMYTALGSEWRPFGHPKRRRPLNSVVLDSGVADR---ILTDIKQFVADPAWYLDRGIPYR 154
+ YT+ + W +P RRP LDS + +L D+ F+ + Y + G YR
Sbjct: 147 MCYTSNNNNW---SYPIIRRPCK--FLDSNLTTEMRSVLKDVDVFMRNEDTYRELGANYR 201
Query: 155 RGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRLNHLLSVAPQNSIILLED 214
RG LLYG GCGK+ I+ ++ + +LNL+ + ++D L L S SI+++E+
Sbjct: 202 RGMLLYGESGCGKTGLISIISNKYGMDSYILNLNSKDMSDSVLISLASNVKARSILVIEE 261
Query: 215 IDAAFVT 221
ID T
Sbjct: 262 IDKQIET 268
>sp|O34703|YJOB_BACSU Uncharacterized ATPase YjoB OS=Bacillus subtilis (strain 168)
GN=yjoB PE=1 SV=1
Length = 423
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 60/106 (56%), Gaps = 4/106 (3%)
Query: 115 RRRPLNSVVLDSGVADRILTDIKQFV-ADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITA 173
R + V+++ + I I QF +D ++Y IPY+RG LLYGPPG GK++ + +
Sbjct: 180 REVQRSQVIMNPLLKKEIYRSIDQFFHSDKSFYQTYDIPYKRGILLYGPPGNGKTTLVKS 239
Query: 174 LAGELEFGICVLNLSERGLTDDRLNHLLSVAPQ--NSIILLEDIDA 217
+AG ++ + ++E + + + + A + +++++EDID+
Sbjct: 240 IAGSIDAPVAYWQITE-FTSSETIEEVFQAARRLAPAVLVIEDIDS 284
>sp|Q54SY2|NVL_DICDI Putative ribosome biogenesis ATPase nvl OS=Dictyostelium discoideum
GN=nvl PE=3 SV=1
Length = 867
Score = 56.6 bits (135), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 11/115 (9%)
Query: 127 GVADRILTDIKQFV----ADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGI 182
G + L DI++ + P Y G+ RG LL+GP GCGK+ A+AGEL+ +
Sbjct: 219 GGVESCLRDIREHIEYPICHPEIYSHLGVEPPRGILLHGPSGCGKTLLAKAIAGELKVPL 278
Query: 183 CVLNLSE-----RGLTDDRLNHLLS--VAPQNSIILLEDIDAAFVTREESSQGLE 230
++ +E G ++ R+ L S +A II +++IDA RE +S+ +E
Sbjct: 279 FAISATEITSGVSGESEARVRTLFSNAIAQAPCIIFIDEIDAIAPKRESASKDME 333
Score = 43.9 bits (102), Expect = 0.001, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 126 SGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE 179
SGV + + I + + P Y + GI G L+YGPPGCGK+ A+A E +
Sbjct: 572 SGVREELTNSILRPIRYPKKYKNMGIDSPAGVLMYGPPGCGKTLLAKAIASECQ 625
>sp|O15381|NVL_HUMAN Nuclear valosin-containing protein-like OS=Homo sapiens GN=NVL PE=1
SV=1
Length = 856
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 10/116 (8%)
Query: 125 DSGVADRILTDIKQF---VADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFG 181
D G D L ++ + + P Y G+ RG LL+GPPGCGK+ A+AGEL+
Sbjct: 266 DVGGNDMTLKEVCKMLIHMRHPEVYHHLGVVPPRGVLLHGPPGCGKTLLAHAIAGELDLP 325
Query: 182 ICVLNLSE-----RGLTDDRLNHLLSVAPQNS--IILLEDIDAAFVTREESSQGLE 230
I + E G ++ +L L A N+ II +++IDA RE +S+ +E
Sbjct: 326 ILKVAAPEIVSGVSGESEQKLRELFEQAVSNAPCIIFIDEIDAITPKREVASKDME 381
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 140 VADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGE 177
V +P + G+ G LL GPPGCGK+ A+A E
Sbjct: 601 VRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANE 638
>sp|C7MC16|FTSH_BRAFD ATP-dependent zinc metalloprotease FtsH OS=Brachybacterium faecium
(strain ATCC 43885 / DSM 4810 / NCIB 9860) GN=ftsH PE=3
SV=1
Length = 704
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 7/92 (7%)
Query: 133 LTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE---FGICVLNLSE 189
L +IKQF+ DP Y G +G LLYGPPG GK+ A+AGE + I + E
Sbjct: 189 LDEIKQFLVDPGRYQAVGAKIPKGVLLYGPPGTGKTLLAKAVAGEANVPFYSISGSDFVE 248
Query: 190 R--GLTDDRLNHLLSVAPQN--SIILLEDIDA 217
G+ R+ L + A +N +II +++IDA
Sbjct: 249 MFVGVGASRVRDLFNTAKENAPAIIFIDEIDA 280
>sp|Q9DBY8|NVL_MOUSE Nuclear valosin-containing protein-like OS=Mus musculus GN=Nvl PE=1
SV=1
Length = 855
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 10/116 (8%)
Query: 125 DSGVADRILTDIKQFVAD---PAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFG 181
D G D L ++ + + P Y G+ RG LL+GPPGCGK+ A+AGEL+
Sbjct: 265 DVGGNDATLKEVCKMLIHMRHPEVYQHLGVVPPRGVLLHGPPGCGKTLLAHAIAGELDLP 324
Query: 182 ICVLNLSE-----RGLTDDRLNHLLSVAPQNS--IILLEDIDAAFVTREESSQGLE 230
I + E G ++ +L L A N+ I+ +++IDA RE +S+ +E
Sbjct: 325 ILKVAAPEIVSGVSGESEQKLRELFDQAVSNAPCIVFIDEIDAITPKREVASKDME 380
Score = 34.7 bits (78), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 128 VADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGE 177
+ D ++ I V +P + G+ G LL GPPGCGK+ A+A E
Sbjct: 588 IRDELIMAILAPVRNPDQFRTLGLGTPAGILLAGPPGCGKTLLAKAVANE 637
>sp|Q6M2F0|FTSH_CORGL ATP-dependent zinc metalloprotease FtsH OS=Corynebacterium
glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 /
LMG 3730 / NCIMB 10025) GN=ftsH PE=3 SV=1
Length = 853
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 13/111 (11%)
Query: 118 PLNSVVLDSGVADRI--LTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALA 175
P N+ +G + + L +IK F+ DP Y G RG LLYGPPG GK+ A+A
Sbjct: 160 PTNTFADVAGAEEAVDELHEIKDFLEDPTRYEALGAKIPRGVLLYGPPGTGKTLLARAVA 219
Query: 176 GELEFGICVLNLSER-------GLTDDRLNHLLSVAPQNS--IILLEDIDA 217
GE G+ ++S G+ R+ L A +NS II +++IDA
Sbjct: 220 GEA--GVPFYSISGSDFVEMFVGVGASRVRDLFKQAKENSPCIIFVDEIDA 268
>sp|C0ZPK5|FTSH_RHOE4 ATP-dependent zinc metalloprotease FtsH OS=Rhodococcus erythropolis
(strain PR4 / NBRC 100887) GN=ftsH PE=3 SV=1
Length = 854
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Query: 133 LTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE--- 189
L +IK F+ +PA Y G RG LLYGPPG GK+ A+AGE ++ S+
Sbjct: 179 LYEIKDFLQNPARYQALGAKIPRGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVE 238
Query: 190 --RGLTDDRLNHLLSVAPQNS--IILLEDIDA 217
G+ R+ + A QNS II +++IDA
Sbjct: 239 MFVGVGASRVRDMFEQAKQNSPCIIFVDEIDA 270
>sp|Q83FV7|FTSH_TROWT ATP-dependent zinc metalloprotease FtsH OS=Tropheryma whipplei
(strain Twist) GN=ftsH PE=3 SV=1
Length = 666
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Query: 133 LTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE---FGICVLNLSE 189
L +IK F++DP Y G +G LL+GPPG GK+ A+AGE F I + E
Sbjct: 174 LQEIKDFLSDPDKYRKLGARIPKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVE 233
Query: 190 R--GLTDDRLNHLLSVAPQN--SIILLEDIDA 217
G+ R+ L A QN SII +++IDA
Sbjct: 234 MFVGVGASRVRDLFEQAKQNSPSIIFIDEIDA 265
>sp|P0C5C0|FTSH_MYCTU ATP-dependent zinc metalloprotease FtsH OS=Mycobacterium
tuberculosis GN=ftsH PE=1 SV=1
Length = 760
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Query: 133 LTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE--- 189
L +IK F+ +P+ Y G +G LLYGPPG GK+ A+AGE ++ S+
Sbjct: 175 LYEIKDFLQNPSRYQALGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVE 234
Query: 190 --RGLTDDRLNHLLSVAPQNS--IILLEDIDA 217
G+ R+ L A QNS II +++IDA
Sbjct: 235 MFVGVGASRVRDLFEQAKQNSPCIIFVDEIDA 266
>sp|A5U8T5|FTSH_MYCTA ATP-dependent zinc metalloprotease FtsH OS=Mycobacterium
tuberculosis (strain ATCC 25177 / H37Ra) GN=ftsH PE=3
SV=1
Length = 760
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Query: 133 LTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE--- 189
L +IK F+ +P+ Y G +G LLYGPPG GK+ A+AGE ++ S+
Sbjct: 175 LYEIKDFLQNPSRYQALGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVE 234
Query: 190 --RGLTDDRLNHLLSVAPQNS--IILLEDIDA 217
G+ R+ L A QNS II +++IDA
Sbjct: 235 MFVGVGASRVRDLFEQAKQNSPCIIFVDEIDA 266
>sp|P0A4V9|FTSH_MYCBO ATP-dependent zinc metalloprotease FtsH OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=ftsH PE=3 SV=1
Length = 760
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Query: 133 LTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE--- 189
L +IK F+ +P+ Y G +G LLYGPPG GK+ A+AGE ++ S+
Sbjct: 175 LYEIKDFLQNPSRYQALGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVE 234
Query: 190 --RGLTDDRLNHLLSVAPQNS--IILLEDIDA 217
G+ R+ L A QNS II +++IDA
Sbjct: 235 MFVGVGASRVRDLFEQAKQNSPCIIFVDEIDA 266
>sp|Q9CD58|FTSH_MYCLE ATP-dependent zinc metalloprotease FtsH OS=Mycobacterium leprae
(strain TN) GN=ftsH PE=3 SV=1
Length = 787
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 133 LTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE--- 189
L +IK F+ +P Y G +G LLYGPPG GK+ A+AGE ++ S+
Sbjct: 175 LYEIKDFLQNPCRYQTLGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVE 234
Query: 190 --RGLTDDRLNHLLSVAPQNS--IILLEDIDA 217
G+ R+ L A QNS II +++IDA
Sbjct: 235 MFVGVGASRVRDLFDQAKQNSPCIIFVDEIDA 266
>sp|Q07844|RIX7_YEAST Ribosome biogenesis ATPase RIX7 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RIX7 PE=1 SV=1
Length = 837
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 116 RRPLNSVVLDSGVADRILTDIKQFVA----DPAWYLDRGIPYRRGYLLYGPPGCGKSSFI 171
R P NS + G D ++ + + + P +L G+ RG LL+GPPGCGK+S
Sbjct: 197 RSPPNSSLKSLGGMDDVVAQLMELIGLPILHPEIFLSTGVEPPRGVLLHGPPGCGKTSIA 256
Query: 172 TALAGELEF 180
ALAGEL+
Sbjct: 257 NALAGELQV 265
Score = 38.5 bits (88), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 136 IKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGE 177
I Q + P Y GI G LL+GPPGCGK+ A+A E
Sbjct: 549 IVQPIKRPELYEKVGISAPGGVLLWGPPGCGKTLLAKAVANE 590
>sp|Q3UMC0|SPAT5_MOUSE Spermatogenesis-associated protein 5 OS=Mus musculus GN=Spata5 PE=2
SV=2
Length = 893
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 140 VADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE-----RGLTD 194
+ P + GIP RG LLYGPPG GK+ A+A E+ + V+N E G T+
Sbjct: 373 LKQPELFKSYGIPAPRGLLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETE 432
Query: 195 DRLNHLLSVAP--QNSIILLEDIDAAFVTREESSQGLE 230
RL + + A SII ++++DA RE + +E
Sbjct: 433 ARLRQIFAEATLRHPSIIFIDELDALCPKREGAQSEVE 470
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 55/116 (47%), Gaps = 17/116 (14%)
Query: 125 DSGVADRILTDIKQFV----ADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGE--L 178
D G + I +KQ V P + GI +G LLYGPPGC K+ ALA E L
Sbjct: 628 DIGGLENIKLKLKQAVEWPLKHPKSFNRMGIQPPKGVLLYGPPGCSKTMIAKALANESGL 687
Query: 179 EF----GICVLNL----SERGLTDDRLNHLLSVAPQNSIILLEDIDAAFVTREESS 226
F G ++N SER + + +VAP SII +++DA V R SS
Sbjct: 688 NFLAIKGPELMNKYVGESERAVREI-FRKARAVAP--SIIFFDELDALAVERGSSS 740
>sp|D3FA80|FTSH2_CONWI ATP-dependent zinc metalloprotease FtsH 2 OS=Conexibacter woesei
(strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577)
GN=ftsH2 PE=3 SV=1
Length = 691
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 7/93 (7%)
Query: 133 LTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE--- 189
L +I+ ++ DP+ YLD G +G LL GPPG GK+ A+AGE + L+ S+
Sbjct: 237 LAEIRDYLDDPSRYLDLGAAAPKGVLLVGPPGTGKTLLAKAVAGEADAAFFSLSGSDFVE 296
Query: 190 --RGLTDDRLNHLLSVAPQNS--IILLEDIDAA 218
G+ R+ L + A + S II +++ DAA
Sbjct: 297 SLVGVGAARVRDLFAKARRMSPAIIFIDEFDAA 329
>sp|D3F124|FTSH1_CONWI ATP-dependent zinc metalloprotease FtsH 1 OS=Conexibacter woesei
(strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577)
GN=ftsH1 PE=3 SV=1
Length = 653
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 63/128 (49%), Gaps = 14/128 (10%)
Query: 104 GSEWRPFGHPKRRR-PLNS---VVLDSGVADRI---LTDIKQFVADPAWYLDRGIPYRRG 156
GS+ FG + RR ++S D AD L +IK+F+ +P + G +G
Sbjct: 134 GSKVMSFGKSRARRLSVDSPKITFRDVAGADEAVEELHEIKEFLENPKKFQALGARIPKG 193
Query: 157 YLLYGPPGCGKSSFITALAGELE---FGICVLNLSER--GLTDDRLNHLLSVAPQNS--I 209
LLYGPPG GK+ A+AGE F I + E G+ R+ L A QN+ I
Sbjct: 194 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKQNAPCI 253
Query: 210 ILLEDIDA 217
I +++IDA
Sbjct: 254 IFMDEIDA 261
>sp|Q1AV13|FTSH_RUBXD ATP-dependent zinc metalloprotease FtsH OS=Rubrobacter xylanophilus
(strain DSM 9941 / NBRC 16129) GN=ftsH PE=3 SV=1
Length = 651
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Query: 133 LTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE---FGICVLNLSE 189
LT+IK+F+ +P + G +G LL GPPG GK+ A+AGE F I + E
Sbjct: 201 LTEIKEFLENPQKFQKLGARIPKGALLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVE 260
Query: 190 R--GLTDDRLNHLLSVAPQNS--IILLEDIDA 217
G+ R+ L A QNS II +++IDA
Sbjct: 261 MFVGVGASRVRDLFEQAKQNSPCIIFVDEIDA 292
>sp|Q67JH0|FTSH3_SYMTH ATP-dependent zinc metalloprotease FtsH 3 OS=Symbiobacterium
thermophilum (strain T / IAM 14863) GN=ftsH3 PE=3 SV=1
Length = 626
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 133 LTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE---FGICVLNLSE 189
L +I F+ P YL+ G +G LLYGPPG GK+ A+AGE F I + E
Sbjct: 169 LAEIVDFLKHPKRYLELGARIPKGVLLYGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 228
Query: 190 R--GLTDDRLNHLLSVAPQNS--IILLEDIDAA 218
G+ R+ L A +NS I+ +++IDA
Sbjct: 229 MFVGVGASRVRDLFEQAKKNSPCIVFIDEIDAV 261
>sp|A0PXM8|FTSH_CLONN ATP-dependent zinc metalloprotease FtsH OS=Clostridium novyi
(strain NT) GN=ftsH PE=3 SV=1
Length = 676
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 133 LTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE---FGICVLNLSE 189
L +I F+ +P YLD G +G LL GPPG GK+ A+AGE F I + E
Sbjct: 180 LEEIVDFLKEPKKYLDMGARIPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 239
Query: 190 R--GLTDDRLNHLLSVAPQNS--IILLEDIDAA 218
G+ R+ L A +NS II +++IDA
Sbjct: 240 MFVGVGASRVRDLFEQAKKNSPCIIFIDEIDAV 272
>sp|Q8NB90|SPAT5_HUMAN Spermatogenesis-associated protein 5 OS=Homo sapiens GN=SPATA5 PE=1
SV=3
Length = 893
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 143 PAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE-----RGLTDDRL 197
P + GIP RG LLYGPPG GK+ A+A E+ + V+N E G T+ +L
Sbjct: 376 PELFKSYGIPAPRGVLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEAKL 435
Query: 198 NHLLSVAP--QNSIILLEDIDAAFVTREESSQGLE 230
+ + A SII ++++DA RE + +E
Sbjct: 436 RQIFAEATLRHPSIIFIDELDALCPKREGAQNEVE 470
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 46/90 (51%), Gaps = 13/90 (14%)
Query: 143 PAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGE--LEF----GICVLNL----SERGL 192
P ++ GI +G LLYGPPGC K+ ALA E L F G ++N SER +
Sbjct: 650 PESFIRMGIQPPKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAV 709
Query: 193 TDDRLNHLLSVAPQNSIILLEDIDAAFVTR 222
+ +VAP SII +++DA V R
Sbjct: 710 RET-FRKARAVAP--SIIFFDELDALAVER 736
>sp|A9GRC9|FTSH1_SORC5 ATP-dependent zinc metalloprotease FtsH 1 OS=Sorangium cellulosum
(strain So ce56) GN=ftsH1 PE=3 SV=1
Length = 619
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 133 LTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE--- 189
L ++ F+ +P+ Y G RG LL GPPG GK+ A+AGE LN SE
Sbjct: 175 LVEVVDFLKEPSRYRSLGGRIPRGLLLIGPPGTGKTLLARAVAGEANVPFFSLNASEFVE 234
Query: 190 --RGLTDDRLNHLLSVAPQN--SIILLEDIDAAFVTR 222
GL R+ L A ++ SI+ +++IDA TR
Sbjct: 235 MFVGLGAARVRELFEEARKSAPSIVFIDEIDAVGRTR 271
>sp|Q3A579|FTSH_PELCD ATP-dependent zinc metalloprotease FtsH OS=Pelobacter carbinolicus
(strain DSM 2380 / Gra Bd 1) GN=ftsH PE=3 SV=1
Length = 646
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 7/101 (6%)
Query: 129 ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLS 188
A + L +I +F+ +P ++ G RG LL GPPG GK+ A+AGE E ++ S
Sbjct: 184 AKQELMEIIEFLRNPKKFMRLGAKAPRGVLLVGPPGTGKTLMARAVAGEAEVPFFTISAS 243
Query: 189 E-----RGLTDDRLNHLLSVAPQN--SIILLEDIDAAFVTR 222
+ G+ R+ L + A +N SII ++++DA +R
Sbjct: 244 QFIEMFVGVGASRVRDLFNNAKKNAPSIIFIDELDAVGRSR 284
>sp|O14325|YB7A_SCHPO Uncharacterized AAA domain-containing protein C16E9.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC16E9.10c PE=1 SV=1
Length = 779
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 20/147 (13%)
Query: 108 RPFGHPKRRRPLNSVVLDSGVADRILTDIKQFVA----DPAWYLDRGIPYRRGYLLYGPP 163
R R P + + D G D + ++ + VA P Y GI RG LL+GPP
Sbjct: 158 RQKAEANREPPSDISLSDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPRGVLLHGPP 217
Query: 164 GCGKSSFITALAGELEFGICVLNLSE-------RGLTDDRLNHLL----SVAPQNSIILL 212
GCGK+ ALA EL G+ +++S G ++ ++ + S+AP ++ +
Sbjct: 218 GCGKTMLANALANEL--GVPFISISAPSIVSGMSGESEKKVREVFEEAKSLAP--CLMFI 273
Query: 213 EDIDAAFVTREESSQGLE-DIDAAFVT 238
++IDA RE + + +E I A F+T
Sbjct: 274 DEIDAVTPKRESAQREMERRIVAQFLT 300
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 13/100 (13%)
Query: 136 IKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF------GICVLNL-- 187
I Q + P Y GI G LL+GPPGCGK+ A+A E + G +LN
Sbjct: 508 IVQPIKRPELYQSVGISAPTGVLLWGPPGCGKTLLAKAVANESKANFISIRGPELLNKYV 567
Query: 188 --SERGLTDDRLNHLLSVAPQNSIILLEDIDAAFVTREES 225
SER + R L + A +I +++DA R++S
Sbjct: 568 GESERAV---RQVFLRARASSPCVIFFDELDAMVPRRDDS 604
>sp|B4F6J6|ATAD1_XENTR ATPase family AAA domain-containing protein 1 OS=Xenopus tropicalis
GN=atad1 PE=2 SV=2
Length = 360
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 60/126 (47%), Gaps = 18/126 (14%)
Query: 118 PLNSVVLDSGVA--DRILTDIKQFVADP--AWYL---DRGIPYRRGYLLYGPPGCGKSSF 170
PL+ +V S +A D ++TD+K V P YL R + +G LLYGPPGCGK+
Sbjct: 83 PLSMLVTWSDIAGLDDVITDLKDTVILPIRKRYLFENSRLLQPPKGVLLYGPPGCGKTMI 142
Query: 171 ITALAGELEFGICVLNLSERGLTDDRLNH---------LLSVAPQNSIILLEDIDAAFVT 221
A A E G +NL LTD L+V Q SII +++ID+ +
Sbjct: 143 AKATAKEA--GCRFINLQPSTLTDKWYGESQKLAAAVFSLAVKLQPSIIFIDEIDSFLRS 200
Query: 222 REESSQ 227
R S
Sbjct: 201 RSSSDH 206
>sp|C7N1I1|FTSH_SLAHD ATP-dependent zinc metalloprotease FtsH OS=Slackia
heliotrinireducens (strain ATCC 29202 / DSM 20476 / NCTC
11029 / RHS 1) GN=ftsH PE=3 SV=1
Length = 783
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 133 LTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE--- 189
L +IK F+ +P Y G RG LL GPPG GK+ A+AGE ++ SE
Sbjct: 297 LQEIKDFLVNPGKYQKLGAKIPRGCLLVGPPGTGKTLLARAVAGEANVPFFSISGSEFVE 356
Query: 190 --RGLTDDRLNHLLSVAPQN--SIILLEDIDA 217
G+ R+ +L A + SII +++IDA
Sbjct: 357 MFVGVGASRVRNLFEQAKEAAPSIIFIDEIDA 388
>sp|Q2SF13|FTSH_HAHCH ATP-dependent zinc metalloprotease FtsH OS=Hahella chejuensis
(strain KCTC 2396) GN=ftsH PE=3 SV=1
Length = 619
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 7/101 (6%)
Query: 129 ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLS 188
A R + ++ +++ DP + G RG LL GPPG GK+ ALAGE ++ S
Sbjct: 184 AKREVQELVEYLRDPDRFHRVGALAPRGVLLMGPPGTGKTLLARALAGEAGVNFYPMSAS 243
Query: 189 E-----RGLTDDRLNHLLSVAPQN--SIILLEDIDAAFVTR 222
E G+ R+ L +A +N SII ++++D+ TR
Sbjct: 244 EFIEVFVGVGASRVRQLFKIAKENSPSIIFIDELDSVGRTR 284
>sp|D4HA34|FTSH_PROAS ATP-dependent zinc metalloprotease FtsH OS=Propionibacterium acnes
(strain SK137) GN=ftsH PE=3 SV=1
Length = 717
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 7/92 (7%)
Query: 133 LTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE---FGICVLNLSE 189
L +I++F+A+PA + G +G LLYGPPG GK+ A+AGE F I + E
Sbjct: 179 LQEIREFLAEPAKFQRVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVE 238
Query: 190 R--GLTDDRLNHLLSVAPQN--SIILLEDIDA 217
G+ R+ L A + +II +++IDA
Sbjct: 239 MFVGVGASRVRDLFEQAKEAAPAIIFIDEIDA 270
>sp|Q5AWS6|CDC48_EMENI Cell division control protein 48 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=cdc48 PE=1 SV=2
Length = 823
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 75/185 (40%), Gaps = 18/185 (9%)
Query: 64 PYFGAGFGLFGLGAGAAILRKARTLALKQYE------GKTVMYTALGSEWRPFGHPKRRR 117
PYF G+ G + R + K E G T + SE P
Sbjct: 158 PYFRDGYRPVKQGDLFTVRGGMRQVEFKVVEVDPPEFGIVAPDTIIHSEGEPIQREDEEN 217
Query: 118 PLNSVVLDS-GVADRILTDIKQFVA----DPAWYLDRGIPYRRGYLLYGPPGCGKSSFIT 172
LN V D G + + I++ V P + GI RG L+YGPPG GK+
Sbjct: 218 NLNEVGYDDIGGCRKQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKTLMAR 277
Query: 173 ALAGELEFGICVLNLSE-----RGLTDDRLNHLLSVAPQNS--IILLEDIDAAFVTREES 225
A+A E ++N E G ++ L A +NS II +++ID+ RE++
Sbjct: 278 AVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAIIFIDEIDSIAPKREKT 337
Query: 226 SQGLE 230
+ +E
Sbjct: 338 NGEVE 342
Score = 35.0 bits (79), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 128 VADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNL 187
V ++ ++ V P + G+ RG L YGPPG GK+ A+A E C N
Sbjct: 507 VKRELIESVQYPVDHPEKFQKFGLSPSRGVLFYGPPGTGKTMLAKAVANE-----CAANF 561
>sp|B1ZMG6|FTSH_OPITP ATP-dependent zinc metalloprotease FtsH OS=Opitutus terrae (strain
DSM 11246 / PB90-1) GN=ftsH PE=3 SV=1
Length = 614
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 25/152 (16%)
Query: 90 LKQYEGKTVMYTALGSEWRPFGHPKRRRPLNSVVLDSGVA------DRILTDIKQFVADP 143
+++Y G+ ++A +R RP+ S V S VA D + ++ +F+ DP
Sbjct: 149 VQRYAGRFTAFSA-----------QRLRPVTSGVSFSSVAGCDEAKDEVY-EVVEFLRDP 196
Query: 144 AWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE-----RGLTDDRLN 198
A + G +G LL GPPG GK+ A+AGE L+ S+ G+ R+
Sbjct: 197 ARFRQTGGRMPKGVLLVGPPGTGKTMLAKAVAGEARANFYSLSGSDFVELYVGVGASRVR 256
Query: 199 HLLSVAPQN--SIILLEDIDAAFVTREESSQG 228
L A + SII +++IDA R + G
Sbjct: 257 SLFKKARETAPSIIFIDEIDAIGRQRSAAESG 288
>sp|Q9SAJ3|FTSHC_ARATH ATP-dependent zinc metalloprotease FTSH 12, chloroplastic
OS=Arabidopsis thaliana GN=FTSH12 PE=2 SV=2
Length = 1008
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 11/106 (10%)
Query: 120 NSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE 179
VVL V D +L ++ ++ +P Y ++ + + RG LL GPPG GK+ F LA E
Sbjct: 493 KEVVLGGDVWD-LLDELMIYMGNPMQYYEKDVAFVRGVLLSGPPGTGKTLFARTLAK--E 549
Query: 180 FGICVLNLSERGLTDD------RLNHLLSVAPQN--SIILLEDIDA 217
G+ + S TD ++N + S+A +N + + +++IDA
Sbjct: 550 SGLPFVFASGAEFTDSEKSGAAKINEMFSIARRNAPAFVFVDEIDA 595
>sp|Q84WU8|FTSH3_ARATH ATP-dependent zinc metalloprotease FTSH 3, mitochondrial
OS=Arabidopsis thaliana GN=FTSH3 PE=1 SV=1
Length = 809
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
Query: 129 ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLS 188
A + + + F+ +P Y D G +G LL GPPG GK+ A AGE G+ L++S
Sbjct: 330 AKQEIMEFVHFLKNPKKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES--GVPFLSIS 387
Query: 189 ER-------GLTDDRLNHLLSVAPQN--SIILLEDIDA 217
G+ R+ HL A Q SII +++IDA
Sbjct: 388 GSDFMEMFVGVGPSRVRHLFQEARQAAPSIIFIDEIDA 425
>sp|Q505J9|ATAD1_RAT ATPase family AAA domain-containing protein 1 OS=Rattus norvegicus
GN=Atad1 PE=1 SV=1
Length = 361
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 57/126 (45%), Gaps = 18/126 (14%)
Query: 118 PLNSVVLDSGVA--DRILTDIKQFVADPA-----WYLDRGIPYRRGYLLYGPPGCGKSSF 170
PLN V S +A D ++TD+K V P + R + +G LLYGPPGCGK+
Sbjct: 83 PLNMHVTWSDIAGLDDVITDLKDTVILPIKKKHLFENSRLLQPPKGVLLYGPPGCGKTLI 142
Query: 171 ITALAGELEFGICVLNLSERGLTDDRLNH---------LLSVAPQNSIILLEDIDAAFVT 221
A A E G +NL LTD L++ Q SII +++ID+
Sbjct: 143 AKATAKEA--GCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFLRN 200
Query: 222 REESSQ 227
R S
Sbjct: 201 RSSSDH 206
>sp|F6QV99|ATAD1_BOVIN ATPase family AAA domain-containing protein 1 OS=Bos taurus
GN=ATAD1 PE=2 SV=2
Length = 361
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 57/126 (45%), Gaps = 18/126 (14%)
Query: 118 PLNSVVLDSGVA--DRILTDIKQFVADPA-----WYLDRGIPYRRGYLLYGPPGCGKSSF 170
PLN V S +A D ++TD+K V P + R + +G LLYGPPGCGK+
Sbjct: 83 PLNMHVTWSDIAGLDDVITDLKDTVILPIKKKHLFENSRLLQPPKGVLLYGPPGCGKTLI 142
Query: 171 ITALAGELEFGICVLNLSERGLTDDRLNH---------LLSVAPQNSIILLEDIDAAFVT 221
A A E G +NL LTD L++ Q SII +++ID+
Sbjct: 143 AKATAKEA--GCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFLRN 200
Query: 222 REESSQ 227
R S
Sbjct: 201 RSSSDH 206
>sp|Q9D5T0|ATAD1_MOUSE ATPase family AAA domain-containing protein 1 OS=Mus musculus
GN=Atad1 PE=1 SV=1
Length = 361
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 57/126 (45%), Gaps = 18/126 (14%)
Query: 118 PLNSVVLDSGVA--DRILTDIKQFVADPA-----WYLDRGIPYRRGYLLYGPPGCGKSSF 170
PLN V S +A D ++TD+K V P + R + +G LLYGPPGCGK+
Sbjct: 83 PLNMHVTWSDIAGLDDVITDLKDTVILPIKKKHLFENSRLLQPPKGVLLYGPPGCGKTLI 142
Query: 171 ITALAGELEFGICVLNLSERGLTDDRLNH---------LLSVAPQNSIILLEDIDAAFVT 221
A A E G +NL LTD L++ Q SII +++ID+
Sbjct: 143 AKATAKEA--GCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFLRN 200
Query: 222 REESSQ 227
R S
Sbjct: 201 RSSSDH 206
>sp|Q8NBU5|ATAD1_HUMAN ATPase family AAA domain-containing protein 1 OS=Homo sapiens
GN=ATAD1 PE=1 SV=1
Length = 361
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 57/126 (45%), Gaps = 18/126 (14%)
Query: 118 PLNSVVLDSGVA--DRILTDIKQFVADPA-----WYLDRGIPYRRGYLLYGPPGCGKSSF 170
PLN V S +A D ++TD+K V P + R + +G LLYGPPGCGK+
Sbjct: 83 PLNMHVTWSDIAGLDDVITDLKDTVILPIKKKHLFENSRLLQPPKGVLLYGPPGCGKTLI 142
Query: 171 ITALAGELEFGICVLNLSERGLTDDRLNH---------LLSVAPQNSIILLEDIDAAFVT 221
A A E G +NL LTD L++ Q SII +++ID+
Sbjct: 143 AKATAKEA--GCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFLRN 200
Query: 222 REESSQ 227
R S
Sbjct: 201 RSSSDH 206
>sp|A1RWU6|RFCL_THEPD Replication factor C large subunit OS=Thermofilum pendens (strain
Hrk 5) GN=rfcL PE=3 SV=1
Length = 413
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 149 RGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRLNHLLSVAPQNS 208
+G P ++ LLYGPPG GK+S + A A E + + LN S+ + LL S
Sbjct: 42 KGKPSKKAALLYGPPGSGKTSIVHATAKEFSWELIELNASDVRTREALQQRLLGALNTRS 101
Query: 209 -------IILLEDIDAAFVTREESSQGLEDI 232
IILL+++D ++ +E + GL+ I
Sbjct: 102 VLGYSGKIILLDEVDG--ISTKEDAGGLQAI 130
>sp|Q8Q084|RFCL_METMA Replication factor C large subunit OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=rfcL PE=3 SV=1
Length = 610
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 131 RILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSER 190
+ + D++++ + W GIP +R +LYGP G GK+S ALAG++E+ + LN S++
Sbjct: 29 KAVQDLRKWAEE--W--QSGIPEKRAVILYGPAGIGKTSSAHALAGDMEWEVIELNASDQ 84
>sp|D1C2C6|FTSH2_SPHTD ATP-dependent zinc metalloprotease FtsH 2 OS=Sphaerobacter
thermophilus (strain DSM 20745 / S 6022) GN=ftsH2 PE=3
SV=1
Length = 652
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 133 LTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE--- 189
+ DI ++ DP + G RG LL GPPG GK+ ALAGE ++ SE
Sbjct: 172 VADIVDYLRDPERFRRLGARIPRGVLLTGPPGTGKTLLTRALAGEARASFFSVSGSEFVE 231
Query: 190 --RGLTDDRLNHLLSVAPQN--SIILLEDIDA 217
G+ R+ L A +N +II +++IDA
Sbjct: 232 LYVGVGASRVRELFRKAKENAPAIIFIDEIDA 263
>sp|Q01853|TERA_MOUSE Transitional endoplasmic reticulum ATPase OS=Mus musculus GN=Vcp
PE=1 SV=4
Length = 806
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 62/142 (43%), Gaps = 12/142 (8%)
Query: 101 TALGSEWRPFGHPKRRRPLNSVVLDS-GVADRILTDIKQFVA----DPAWYLDRGIPYRR 155
T + E P LN V D G + L IK+ V PA + G+ R
Sbjct: 180 TVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPR 239
Query: 156 GYLLYGPPGCGKSSFITALAGELEFGICVLNLSE-----RGLTDDRLNHLLSVAPQN--S 208
G LLYGPPG GK+ A+A E ++N E G ++ L A +N +
Sbjct: 240 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPA 299
Query: 209 IILLEDIDAAFVTREESSQGLE 230
II ++++DA RE++ +E
Sbjct: 300 IIFIDELDAIAPKREKTHGEVE 321
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 131 RILTDIKQF-VADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE 179
R L ++ Q+ V P +L G+ +G L YGPPGCGK+ A+A E +
Sbjct: 487 RELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536
>sp|P55072|TERA_HUMAN Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP
PE=1 SV=4
Length = 806
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 62/142 (43%), Gaps = 12/142 (8%)
Query: 101 TALGSEWRPFGHPKRRRPLNSVVLDS-GVADRILTDIKQFVA----DPAWYLDRGIPYRR 155
T + E P LN V D G + L IK+ V PA + G+ R
Sbjct: 180 TVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPR 239
Query: 156 GYLLYGPPGCGKSSFITALAGELEFGICVLNLSE-----RGLTDDRLNHLLSVAPQN--S 208
G LLYGPPG GK+ A+A E ++N E G ++ L A +N +
Sbjct: 240 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPA 299
Query: 209 IILLEDIDAAFVTREESSQGLE 230
II ++++DA RE++ +E
Sbjct: 300 IIFIDELDAIAPKREKTHGEVE 321
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 131 RILTDIKQF-VADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE 179
R L ++ Q+ V P +L G+ +G L YGPPGCGK+ A+A E +
Sbjct: 487 RELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.141 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,612,921
Number of Sequences: 539616
Number of extensions: 4175568
Number of successful extensions: 18129
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 291
Number of HSP's that attempted gapping in prelim test: 17272
Number of HSP's gapped (non-prelim): 1048
length of query: 244
length of database: 191,569,459
effective HSP length: 114
effective length of query: 130
effective length of database: 130,053,235
effective search space: 16906920550
effective search space used: 16906920550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)