Query psy1371
Match_columns 244
No_of_seqs 318 out of 2763
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 18:29:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1371.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1371hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0743|consensus 99.9 7.5E-22 1.6E-26 174.7 13.2 142 78-221 160-301 (457)
2 COG2274 SunT ABC-type bacterio 99.9 2.3E-23 5E-28 197.9 3.9 188 13-226 383-575 (709)
3 KOG0058|consensus 99.8 3.7E-22 8.1E-27 185.0 3.1 181 16-225 381-569 (716)
4 COG1222 RPT1 ATP-dependent 26S 99.8 7.4E-21 1.6E-25 163.8 9.5 128 114-241 145-283 (406)
5 KOG0730|consensus 99.8 1E-20 2.2E-25 173.4 10.2 131 112-242 426-564 (693)
6 TIGR02868 CydC thiol reductant 99.8 3.1E-21 6.8E-26 180.0 6.1 184 16-223 247-433 (529)
7 KOG0736|consensus 99.8 2.9E-20 6.2E-25 172.5 10.7 129 113-242 665-803 (953)
8 KOG0733|consensus 99.8 3.3E-20 7.2E-25 168.6 10.1 126 116-242 186-319 (802)
9 KOG0056|consensus 99.8 1.7E-21 3.7E-26 173.4 1.6 168 27-227 463-641 (790)
10 TIGR01193 bacteriocin_ABC ABC- 99.8 3.1E-21 6.8E-26 185.7 2.5 180 16-221 388-571 (708)
11 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 9.1E-21 2E-25 181.9 5.3 180 16-223 368-552 (686)
12 KOG0733|consensus 99.8 7.5E-20 1.6E-24 166.3 9.4 130 114-243 505-642 (802)
13 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 2.3E-20 5.1E-25 179.7 6.0 188 15-222 385-577 (710)
14 TIGR03375 type_I_sec_LssB type 99.8 8.3E-21 1.8E-25 182.4 2.4 182 16-223 378-564 (694)
15 COG1132 MdlB ABC-type multidru 99.8 9.9E-20 2.1E-24 171.3 7.2 182 15-224 244-429 (567)
16 PRK11176 lipid transporter ATP 99.8 7.8E-20 1.7E-24 172.4 6.5 179 17-223 259-442 (582)
17 TIGR00958 3a01208 Conjugate Tr 99.8 7.2E-20 1.6E-24 176.2 6.0 181 16-223 394-580 (711)
18 PRK13657 cyclic beta-1,2-gluca 99.8 3E-19 6.5E-24 168.7 6.2 182 16-223 249-434 (588)
19 TIGR01846 type_I_sec_HlyB type 99.8 4.4E-19 9.6E-24 170.5 7.0 180 16-222 371-555 (694)
20 KOG0057|consensus 99.8 3.3E-19 7.2E-24 160.8 5.4 171 25-225 277-452 (591)
21 TIGR02203 MsbA_lipidA lipid A 99.8 3.5E-19 7.6E-24 167.6 5.9 178 17-222 248-430 (571)
22 TIGR02857 CydD thiol reductant 99.8 3.6E-19 7.9E-24 166.1 5.9 176 20-223 241-421 (529)
23 TIGR01842 type_I_sec_PrtD type 99.8 8E-19 1.7E-23 164.4 6.2 176 18-222 236-416 (544)
24 KOG0738|consensus 99.8 4.7E-18 1E-22 147.7 10.1 130 114-244 206-344 (491)
25 PRK10789 putative multidrug tr 99.7 9.6E-19 2.1E-23 164.6 6.0 178 18-223 232-414 (569)
26 PRK10790 putative multidrug tr 99.7 7.4E-19 1.6E-23 166.1 5.0 167 26-222 269-439 (592)
27 TIGR01192 chvA glucan exporter 99.7 1.2E-18 2.6E-23 164.5 6.0 181 17-223 250-434 (585)
28 KOG0734|consensus 99.7 8.7E-18 1.9E-22 151.0 10.4 126 116-242 300-433 (752)
29 PRK11160 cysteine/glutathione 99.7 1.6E-18 3.5E-23 163.2 6.0 180 17-223 255-439 (574)
30 TIGR02204 MsbA_rel ABC transpo 99.7 2.6E-18 5.7E-23 161.9 6.3 180 19-223 254-439 (576)
31 KOG0727|consensus 99.7 1.2E-17 2.6E-22 138.3 9.4 129 114-242 149-288 (408)
32 PTZ00265 multidrug resistance 99.7 2.4E-18 5.2E-23 175.5 6.0 187 16-224 1076-1322(1466)
33 KOG0731|consensus 99.7 2.5E-17 5.4E-22 155.0 11.0 128 114-242 305-444 (774)
34 KOG0739|consensus 99.7 2.4E-17 5.3E-22 139.2 8.5 127 114-241 127-261 (439)
35 PRK11174 cysteine/glutathione 99.7 1.2E-17 2.5E-22 157.9 7.4 96 116-223 349-448 (588)
36 COG5265 ATM1 ABC-type transpor 99.7 9.9E-18 2.1E-22 147.2 5.7 176 22-227 182-366 (497)
37 COG4618 ArpD ABC-type protease 99.7 1.3E-17 2.8E-22 149.4 5.9 172 18-225 254-437 (580)
38 KOG0055|consensus 99.7 3.6E-18 7.9E-23 166.7 1.9 176 14-222 899-1088(1228)
39 KOG0055|consensus 99.7 1.6E-17 3.4E-22 162.3 3.4 104 111-225 345-454 (1228)
40 KOG0735|consensus 99.7 1.3E-16 2.8E-21 147.5 9.1 127 116-242 663-797 (952)
41 TIGR01194 cyc_pep_trnsptr cycl 99.7 1.2E-16 2.6E-21 150.0 6.7 161 35-215 263-432 (555)
42 PTZ00454 26S protease regulato 99.7 4.7E-16 1E-20 139.8 10.1 128 114-241 139-277 (398)
43 COG4988 CydD ABC-type transpor 99.7 1.7E-16 3.7E-21 144.8 7.0 98 117-225 321-422 (559)
44 COG0464 SpoVK ATPases of the A 99.6 1.4E-15 3.1E-20 141.0 10.8 129 114-242 236-372 (494)
45 COG0465 HflB ATP-dependent Zn 99.6 1.5E-15 3.1E-20 140.6 10.4 128 114-242 144-282 (596)
46 TIGR00957 MRP_assoc_pro multi 99.6 2.9E-16 6.2E-21 161.5 6.2 175 22-220 1201-1382(1522)
47 COG1223 Predicted ATPase (AAA+ 99.6 9.9E-16 2.1E-20 127.4 7.7 125 114-242 115-248 (368)
48 TIGR03689 pup_AAA proteasome A 99.6 1.9E-15 4.1E-20 138.9 10.0 129 113-241 175-326 (512)
49 PLN00020 ribulose bisphosphate 99.6 1.3E-15 2.7E-20 133.4 7.7 125 116-241 111-249 (413)
50 TIGR01243 CDC48 AAA family ATP 99.6 3.2E-15 6.9E-20 144.5 10.3 127 115-241 448-583 (733)
51 KOG0726|consensus 99.6 1.5E-15 3.2E-20 128.2 6.9 126 116-241 181-317 (440)
52 PTZ00361 26 proteosome regulat 99.6 7.1E-15 1.5E-19 133.3 11.4 126 116-241 179-315 (438)
53 KOG0651|consensus 99.6 3E-15 6.4E-20 127.2 8.0 110 114-223 126-242 (388)
54 KOG0728|consensus 99.6 3.5E-15 7.6E-20 123.7 7.5 111 131-241 158-279 (404)
55 KOG0729|consensus 99.6 8E-15 1.7E-19 122.5 9.1 111 114-224 171-288 (435)
56 KOG0652|consensus 99.6 5.4E-15 1.2E-19 123.2 8.0 125 117-241 168-303 (424)
57 TIGR01241 FtsH_fam ATP-depende 99.6 5.9E-15 1.3E-19 136.8 9.2 127 114-241 49-186 (495)
58 PTZ00243 ABC transporter; Prov 99.6 2.1E-15 4.5E-20 155.2 6.2 96 115-221 1307-1407(1560)
59 PRK03992 proteasome-activating 99.6 1.2E-14 2.6E-19 130.8 9.9 127 115-241 126-263 (389)
60 COG4987 CydC ABC-type transpor 99.6 9.9E-15 2.2E-19 131.9 8.2 99 116-225 336-439 (573)
61 PTZ00265 multidrug resistance 99.6 9E-16 1.9E-20 156.9 1.6 95 116-221 382-483 (1466)
62 KOG0737|consensus 99.5 1.5E-14 3.2E-19 125.5 8.5 122 116-238 88-219 (386)
63 PLN03130 ABC transporter C fam 99.5 8E-15 1.7E-19 151.3 6.5 97 115-222 1236-1337(1622)
64 COG2884 FtsE Predicted ATPase 99.5 6.3E-15 1.4E-19 117.4 4.4 117 117-244 2-129 (223)
65 COG1126 GlnQ ABC-type polar am 99.5 4.6E-15 9.9E-20 120.5 3.6 114 118-243 4-127 (240)
66 PLN03232 ABC transporter C fam 99.5 2.2E-14 4.7E-19 147.6 9.0 97 115-222 1233-1334(1495)
67 PRK10522 multidrug transporter 99.5 1.6E-14 3.5E-19 135.4 6.7 89 116-215 322-413 (547)
68 COG3842 PotA ABC-type spermidi 99.5 3.9E-15 8.4E-20 130.6 2.3 115 117-243 6-127 (352)
69 COG3839 MalK ABC-type sugar tr 99.5 3E-15 6.6E-20 130.6 1.5 115 117-243 4-124 (338)
70 COG1125 OpuBA ABC-type proline 99.5 1.8E-14 3.9E-19 119.6 5.6 114 117-242 2-123 (309)
71 CHL00195 ycf46 Ycf46; Provisio 99.5 6.1E-14 1.3E-18 128.9 9.5 123 116-241 224-355 (489)
72 COG1116 TauB ABC-type nitrate/ 99.5 4E-15 8.7E-20 123.6 0.7 112 118-243 5-121 (248)
73 COG1120 FepC ABC-type cobalami 99.5 7.5E-15 1.6E-19 123.7 2.0 113 118-242 4-128 (258)
74 PRK10733 hflB ATP-dependent me 99.5 1.9E-13 4E-18 130.2 11.2 122 119-241 151-283 (644)
75 TIGR01242 26Sp45 26S proteasom 99.5 1.1E-13 2.5E-18 123.6 8.9 111 114-224 116-233 (364)
76 TIGR01243 CDC48 AAA family ATP 99.5 1.2E-13 2.6E-18 133.6 9.7 127 115-241 173-307 (733)
77 PLN03130 ABC transporter C fam 99.5 1.3E-14 2.9E-19 149.7 3.1 165 22-224 537-705 (1622)
78 PLN03232 ABC transporter C fam 99.5 1E-14 2.2E-19 150.1 1.7 164 24-224 539-705 (1495)
79 CHL00176 ftsH cell division pr 99.5 1.6E-13 3.4E-18 129.9 9.3 126 115-241 178-314 (638)
80 TIGR00954 3a01203 Peroxysomal 99.4 1E-13 2.2E-18 132.7 4.3 86 116-220 451-537 (659)
81 COG4619 ABC-type uncharacteriz 99.4 1.6E-13 3.6E-18 107.5 4.5 95 148-242 23-122 (223)
82 COG1121 ZnuC ABC-type Mn/Zn tr 99.4 5.9E-14 1.3E-18 117.8 1.0 80 117-208 5-84 (254)
83 COG1131 CcmA ABC-type multidru 99.4 1.5E-13 3.1E-18 119.3 3.5 115 118-243 6-127 (293)
84 KOG0741|consensus 99.4 4.5E-13 9.7E-18 120.9 6.3 108 135-242 237-363 (744)
85 COG1122 CbiO ABC-type cobalt t 99.4 1.2E-13 2.6E-18 115.7 1.7 116 117-243 4-129 (235)
86 KOG0730|consensus 99.4 1.8E-12 4E-17 119.6 9.4 113 130-242 194-314 (693)
87 COG1117 PstB ABC-type phosphat 99.4 1.4E-12 2.9E-17 106.0 7.6 112 116-239 7-132 (253)
88 TIGR01271 CFTR_protein cystic 99.4 5.2E-13 1.1E-17 137.4 6.2 94 115-220 1216-1314(1490)
89 KOG0744|consensus 99.4 1.5E-12 3.3E-17 111.4 7.0 124 118-241 140-290 (423)
90 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.4 2.3E-13 5E-18 112.9 1.9 113 119-242 3-130 (218)
91 TIGR00960 3a0501s02 Type II (G 99.3 2.8E-13 6.2E-18 112.3 2.3 82 119-211 4-92 (216)
92 cd03292 ABC_FtsE_transporter F 99.3 3.9E-13 8.4E-18 111.2 2.8 82 119-211 3-90 (214)
93 KOG0740|consensus 99.3 2E-12 4.4E-17 115.5 7.4 127 115-242 148-282 (428)
94 cd03263 ABC_subfamily_A The AB 99.3 5.6E-13 1.2E-17 110.8 3.7 82 119-211 3-87 (220)
95 cd03226 ABC_cobalt_CbiO_domain 99.3 4.6E-13 1E-17 110.2 2.7 112 119-242 2-116 (205)
96 cd03258 ABC_MetN_methionine_tr 99.3 5.3E-13 1.2E-17 111.9 3.1 83 118-211 3-94 (233)
97 COG1127 Ttg2A ABC-type transpo 99.3 5.8E-13 1.3E-17 109.9 3.1 116 115-242 7-134 (263)
98 cd03266 ABC_NatA_sodium_export 99.3 5.9E-13 1.3E-17 110.5 3.2 83 119-212 4-91 (218)
99 cd03261 ABC_Org_Solvent_Resist 99.3 3.9E-13 8.4E-18 113.0 2.0 112 119-242 3-126 (235)
100 COG4525 TauB ABC-type taurine 99.3 1.4E-12 2.9E-17 104.7 4.7 112 119-243 6-123 (259)
101 TIGR02673 FtsE cell division A 99.3 5.8E-13 1.3E-17 110.2 2.7 82 119-211 4-91 (214)
102 PRK13537 nodulation ABC transp 99.3 7.7E-13 1.7E-17 115.5 3.5 114 117-242 8-128 (306)
103 TIGR02315 ABC_phnC phosphonate 99.3 1.2E-12 2.5E-17 110.5 4.3 91 118-219 3-101 (243)
104 cd03269 ABC_putative_ATPase Th 99.3 6E-13 1.3E-17 109.9 2.3 80 119-211 3-82 (210)
105 cd03264 ABC_drug_resistance_li 99.3 1.1E-12 2.5E-17 108.3 3.7 111 119-242 3-120 (211)
106 COG3638 ABC-type phosphate/pho 99.3 8.3E-13 1.8E-17 108.7 2.8 116 117-243 4-138 (258)
107 cd03265 ABC_DrrA DrrA is the A 99.3 1.1E-12 2.3E-17 109.2 3.5 81 119-211 3-85 (220)
108 TIGR00957 MRP_assoc_pro multi 99.3 3.6E-13 7.9E-18 138.9 0.8 164 24-222 556-723 (1522)
109 cd03262 ABC_HisP_GlnQ_permease 99.3 9.9E-13 2.1E-17 108.7 3.0 81 119-211 3-88 (213)
110 cd03259 ABC_Carb_Solutes_like 99.3 8.3E-13 1.8E-17 109.3 2.5 81 119-211 3-84 (213)
111 TIGR02314 ABC_MetN D-methionin 99.3 4.9E-13 1.1E-17 118.3 1.1 115 118-243 3-131 (343)
112 PRK11650 ugpC glycerol-3-phosp 99.3 3.3E-13 7.1E-18 120.1 -0.1 113 118-242 5-124 (356)
113 COG4559 ABC-type hemin transpo 99.3 4.7E-12 1E-16 102.8 6.5 114 118-243 3-126 (259)
114 PRK11432 fbpC ferric transport 99.3 4.6E-13 1E-17 118.9 0.6 115 117-243 7-127 (351)
115 PRK10908 cell division protein 99.3 1.2E-12 2.6E-17 109.1 2.8 82 119-211 4-91 (222)
116 cd03256 ABC_PhnC_transporter A 99.3 1.5E-12 3.3E-17 109.6 3.6 90 119-219 3-100 (241)
117 cd03295 ABC_OpuCA_Osmoprotecti 99.3 1.8E-12 4E-17 109.3 3.8 113 119-242 3-123 (242)
118 TIGR03265 PhnT2 putative 2-ami 99.3 4.8E-13 1E-17 118.9 0.2 115 117-243 5-125 (353)
119 cd03260 ABC_PstB_phosphate_tra 99.3 1.6E-12 3.4E-17 108.7 3.1 88 119-218 3-101 (227)
120 COG1136 SalX ABC-type antimicr 99.3 4.1E-12 8.8E-17 105.2 5.5 102 131-243 19-132 (226)
121 cd03293 ABC_NrtD_SsuB_transpor 99.3 6.3E-13 1.4E-17 110.6 0.5 80 119-211 3-85 (220)
122 cd03254 ABCC_Glucan_exporter_l 99.3 2.5E-12 5.3E-17 107.6 4.0 93 117-220 3-99 (229)
123 PRK13543 cytochrome c biogenes 99.3 1.8E-12 3.9E-17 107.5 2.9 83 117-211 12-94 (214)
124 TIGR03410 urea_trans_UrtE urea 99.3 1.6E-12 3.5E-17 108.8 2.6 82 119-212 3-88 (230)
125 cd03218 ABC_YhbG The ABC trans 99.3 1.7E-12 3.6E-17 108.8 2.7 82 119-212 3-88 (232)
126 PRK13643 cbiO cobalt transport 99.3 1.4E-12 3.1E-17 112.9 2.3 114 118-242 3-133 (288)
127 TIGR03608 L_ocin_972_ABC putat 99.3 2.1E-12 4.5E-17 106.2 3.1 80 120-211 2-88 (206)
128 cd03235 ABC_Metallic_Cations A 99.3 2.4E-12 5.2E-17 106.5 3.3 78 119-210 2-79 (213)
129 PRK13536 nodulation factor exp 99.3 1.8E-12 4E-17 114.7 2.7 115 117-243 42-163 (340)
130 COG1124 DppF ABC-type dipeptid 99.3 2.1E-12 4.5E-17 106.9 2.8 80 118-208 5-91 (252)
131 cd03301 ABC_MalK_N The N-termi 99.3 1.2E-12 2.7E-17 108.2 1.5 81 119-211 3-84 (213)
132 COG4152 ABC-type uncharacteriz 99.3 3.3E-12 7.2E-17 105.6 3.9 112 119-243 5-121 (300)
133 PRK11153 metN DL-methionine tr 99.3 1.1E-12 2.5E-17 116.2 1.1 114 118-242 3-130 (343)
134 cd03225 ABC_cobalt_CbiO_domain 99.3 5.7E-12 1.2E-16 104.1 5.1 79 119-208 2-84 (211)
135 COG1135 AbcC ABC-type metal io 99.3 3.3E-12 7.1E-17 109.0 3.6 102 131-243 20-132 (339)
136 TIGR01288 nodI ATP-binding ABC 99.3 2.8E-12 6.1E-17 111.8 3.4 83 117-211 5-89 (303)
137 PRK13647 cbiO cobalt transport 99.3 2.4E-12 5.1E-17 110.8 2.8 81 117-208 5-88 (274)
138 PRK10247 putative ABC transpor 99.3 4.3E-12 9.3E-17 106.0 4.1 90 117-218 8-101 (225)
139 PRK13632 cbiO cobalt transport 99.3 3.1E-12 6.8E-17 109.8 3.4 116 116-242 7-132 (271)
140 TIGR03864 PQQ_ABC_ATP ABC tran 99.2 2.2E-12 4.8E-17 108.5 2.2 81 119-211 4-86 (236)
141 TIGR02211 LolD_lipo_ex lipopro 99.2 2.1E-12 4.5E-17 107.4 2.0 82 119-211 4-95 (221)
142 PRK13646 cbiO cobalt transport 99.2 1.9E-12 4.1E-17 112.0 1.8 114 118-242 4-134 (286)
143 PRK09493 glnQ glutamine ABC tr 99.2 2E-12 4.4E-17 108.9 1.9 81 119-211 4-89 (240)
144 PRK13636 cbiO cobalt transport 99.2 2.4E-12 5.3E-17 111.2 2.3 115 117-242 6-131 (283)
145 PRK11629 lolD lipoprotein tran 99.2 1.4E-12 3.1E-17 109.4 0.7 115 117-242 6-135 (233)
146 PRK13631 cbiO cobalt transport 99.2 1.8E-12 3.9E-17 113.8 1.3 116 116-242 21-165 (320)
147 PRK13637 cbiO cobalt transport 99.2 2.2E-12 4.8E-17 111.7 1.7 113 119-242 5-132 (287)
148 PRK13651 cobalt transporter AT 99.2 2.2E-12 4.9E-17 112.5 1.7 114 118-242 4-154 (305)
149 PRK13649 cbiO cobalt transport 99.2 3.4E-12 7.4E-17 110.0 2.8 90 118-218 4-107 (280)
150 PRK13634 cbiO cobalt transport 99.2 2.9E-12 6.4E-17 111.1 2.4 114 118-242 4-134 (290)
151 TIGR01188 drrA daunorubicin re 99.2 1.3E-11 2.8E-16 107.7 6.2 95 148-242 13-114 (302)
152 PRK13650 cbiO cobalt transport 99.2 3.9E-12 8.5E-17 109.7 3.0 115 117-242 5-130 (279)
153 TIGR03522 GldA_ABC_ATP gliding 99.2 2.8E-12 6.1E-17 111.8 2.1 113 118-242 4-123 (301)
154 cd03234 ABCG_White The White s 99.2 3E-12 6.6E-17 106.9 2.2 83 118-211 5-93 (226)
155 PRK11607 potG putrescine trans 99.2 1.4E-12 3E-17 116.9 0.1 115 117-243 20-140 (377)
156 PRK11264 putative amino-acid A 99.2 4.8E-12 1E-16 107.2 3.4 114 117-242 4-134 (250)
157 PRK09452 potA putrescine/sperm 99.2 1.8E-12 3.9E-17 116.0 0.8 115 116-242 14-134 (375)
158 cd03224 ABC_TM1139_LivF_branch 99.2 3E-12 6.5E-17 106.5 2.0 89 119-219 3-97 (222)
159 cd03268 ABC_BcrA_bacitracin_re 99.2 5.7E-12 1.2E-16 103.9 3.5 81 119-211 3-84 (208)
160 cd03219 ABC_Mj1267_LivG_branch 99.2 3.7E-12 7.9E-17 107.0 2.4 81 119-211 3-87 (236)
161 PRK11124 artP arginine transpo 99.2 5E-12 1.1E-16 106.7 3.2 82 118-211 4-94 (242)
162 TIGR03258 PhnT 2-aminoethylpho 99.2 1.7E-12 3.8E-17 115.7 0.4 115 117-243 6-128 (362)
163 TIGR01166 cbiO cobalt transpor 99.2 8.7E-12 1.9E-16 101.4 4.5 61 148-208 12-77 (190)
164 TIGR00972 3a0107s01c2 phosphat 99.2 6.2E-12 1.3E-16 106.5 3.7 88 119-218 4-102 (247)
165 PRK11000 maltose/maltodextrin 99.2 1.7E-12 3.6E-17 116.2 0.2 114 117-242 4-123 (369)
166 PRK13644 cbiO cobalt transport 99.2 3.4E-12 7.4E-17 109.8 2.1 113 119-242 4-126 (274)
167 cd03296 ABC_CysA_sulfate_impor 99.2 1.7E-12 3.7E-17 109.4 0.2 82 118-211 4-86 (239)
168 KOG0732|consensus 99.2 2.6E-11 5.5E-16 117.8 8.1 128 115-242 260-400 (1080)
169 COG1118 CysA ABC-type sulfate/ 99.2 8E-12 1.7E-16 106.5 4.1 96 148-243 22-128 (345)
170 PRK13638 cbiO cobalt transport 99.2 6.7E-12 1.5E-16 107.7 3.8 80 118-209 3-87 (271)
171 cd03294 ABC_Pro_Gly_Bertaine T 99.2 1.8E-11 3.9E-16 105.0 6.4 77 135-211 29-114 (269)
172 cd03244 ABCC_MRP_domain2 Domai 99.2 6.4E-12 1.4E-16 104.5 3.4 91 117-218 3-98 (221)
173 cd03257 ABC_NikE_OppD_transpor 99.2 4.8E-12 1E-16 105.7 2.6 79 119-208 4-91 (228)
174 PRK13635 cbiO cobalt transport 99.2 5.2E-12 1.1E-16 108.9 2.8 81 117-208 6-90 (279)
175 PRK13648 cbiO cobalt transport 99.2 8.5E-12 1.8E-16 107.0 4.0 81 117-208 8-92 (269)
176 PRK14250 phosphate ABC transpo 99.2 6.6E-12 1.4E-16 105.9 3.2 90 118-219 5-98 (241)
177 KOG0054|consensus 99.2 1.1E-11 2.3E-16 124.2 5.2 98 114-222 1136-1238(1381)
178 PRK13652 cbiO cobalt transport 99.2 6.2E-12 1.3E-16 108.3 3.1 114 118-242 5-127 (277)
179 TIGR03005 ectoine_ehuA ectoine 99.2 4.5E-12 9.8E-17 107.6 2.2 82 118-211 2-99 (252)
180 PF00004 AAA: ATPase family as 99.2 1.8E-11 4E-16 92.8 5.3 85 157-241 1-94 (132)
181 PF05496 RuvB_N: Holliday junc 99.2 5.6E-11 1.2E-15 98.0 8.3 100 112-220 16-115 (233)
182 PRK13548 hmuV hemin importer A 99.2 9E-12 2E-16 106.2 3.7 81 118-210 4-87 (258)
183 PRK10584 putative ABC transpor 99.2 5.5E-12 1.2E-16 105.4 2.2 84 117-211 7-100 (228)
184 PRK14273 phosphate ABC transpo 99.2 8.2E-12 1.8E-16 106.1 3.1 92 116-219 7-109 (254)
185 cd03247 ABCC_cytochrome_bd The 99.2 3.5E-12 7.6E-17 102.7 0.8 86 119-215 3-91 (178)
186 cd03300 ABC_PotA_N PotA is an 99.2 6.8E-12 1.5E-16 105.3 2.4 81 119-211 3-84 (232)
187 PRK13639 cbiO cobalt transport 99.2 5.8E-12 1.3E-16 108.4 2.0 113 119-242 4-127 (275)
188 PRK13540 cytochrome c biogenes 99.2 8.4E-12 1.8E-16 102.4 2.8 81 119-211 4-86 (200)
189 PRK14237 phosphate transporter 99.2 5.7E-12 1.2E-16 108.0 1.9 97 111-219 15-122 (267)
190 PRK13633 cobalt transporter AT 99.2 6.7E-12 1.5E-16 108.3 2.3 115 117-242 5-134 (280)
191 PRK10895 lipopolysaccharide AB 99.2 6.1E-12 1.3E-16 106.0 2.0 83 118-212 5-91 (241)
192 cd03213 ABCG_EPDR ABCG transpo 99.2 4.8E-12 1E-16 103.4 1.3 84 117-211 4-94 (194)
193 cd03245 ABCC_bacteriocin_expor 99.2 1.4E-11 3E-16 102.4 4.0 91 118-219 4-99 (220)
194 PRK11248 tauB taurine transpor 99.2 3.6E-12 7.8E-17 108.5 0.4 79 119-211 4-82 (255)
195 PRK14242 phosphate transporter 99.2 7.9E-12 1.7E-16 106.1 2.5 92 116-219 6-108 (253)
196 cd03290 ABCC_SUR1_N The SUR do 99.2 8E-12 1.7E-16 103.8 2.4 91 119-220 3-101 (218)
197 PRK14269 phosphate ABC transpo 99.2 1.1E-11 2.3E-16 105.0 3.2 90 118-219 4-100 (246)
198 TIGR02982 heterocyst_DevA ABC 99.2 8E-12 1.7E-16 104.0 2.4 83 119-212 4-95 (220)
199 cd03251 ABCC_MsbA MsbA is an e 99.2 7.9E-12 1.7E-16 104.8 2.3 91 119-220 3-98 (234)
200 cd03228 ABCC_MRP_Like The MRP 99.2 7.5E-12 1.6E-16 100.2 2.1 86 119-215 3-92 (171)
201 PRK10744 pstB phosphate transp 99.2 9E-12 1.9E-16 106.3 2.7 94 114-219 11-115 (260)
202 PRK10619 histidine/lysine/argi 99.2 7.8E-12 1.7E-16 106.5 2.3 114 117-242 6-141 (257)
203 PRK13641 cbiO cobalt transport 99.2 8.3E-12 1.8E-16 108.1 2.4 114 118-242 4-134 (287)
204 cd03252 ABCC_Hemolysin The ABC 99.2 6.1E-12 1.3E-16 105.8 1.5 91 119-220 3-98 (237)
205 cd03289 ABCC_CFTR2 The CFTR su 99.2 1E-11 2.3E-16 106.8 2.9 91 117-219 3-98 (275)
206 PRK11247 ssuB aliphatic sulfon 99.2 8.4E-12 1.8E-16 106.4 2.3 91 115-219 11-103 (257)
207 cd03253 ABCC_ATM1_transporter 99.2 6.4E-12 1.4E-16 105.5 1.5 91 119-220 3-97 (236)
208 cd03246 ABCC_Protease_Secretio 99.2 6.6E-12 1.4E-16 100.7 1.4 89 119-218 3-96 (173)
209 COG1137 YhbG ABC-type (unclass 99.2 4.9E-12 1.1E-16 101.8 0.6 95 148-242 24-129 (243)
210 PRK10575 iron-hydroxamate tran 99.2 1.1E-11 2.4E-16 106.0 2.8 84 116-211 11-97 (265)
211 cd03250 ABCC_MRP_domain1 Domai 99.2 6.6E-12 1.4E-16 103.2 1.4 81 119-220 3-88 (204)
212 COG4555 NatA ABC-type Na+ tran 99.2 4.3E-11 9.4E-16 96.5 5.9 111 120-241 5-122 (245)
213 PRK10851 sulfate/thiosulfate t 99.2 3.4E-12 7.5E-17 113.5 -0.5 113 119-243 5-127 (353)
214 PRK09536 btuD corrinoid ABC tr 99.2 7.3E-12 1.6E-16 112.9 1.5 115 117-243 4-130 (402)
215 PRK14267 phosphate ABC transpo 99.2 1.6E-11 3.4E-16 104.3 3.5 83 117-211 5-97 (253)
216 PRK14259 phosphate ABC transpo 99.2 1.1E-11 2.3E-16 106.4 2.4 92 116-219 13-115 (269)
217 TIGR03411 urea_trans_UrtD urea 99.2 9.7E-12 2.1E-16 104.9 1.9 82 118-211 4-89 (242)
218 PRK14241 phosphate transporter 99.2 1.4E-11 3E-16 105.0 2.8 83 117-211 5-97 (258)
219 PRK14274 phosphate ABC transpo 99.2 9.5E-12 2.1E-16 106.1 1.7 92 116-219 12-114 (259)
220 PRK14247 phosphate ABC transpo 99.2 2.3E-11 4.9E-16 103.1 3.9 83 117-211 4-94 (250)
221 PRK13538 cytochrome c biogenes 99.2 7.7E-12 1.7E-16 102.9 0.9 81 119-211 4-86 (204)
222 cd03298 ABC_ThiQ_thiamine_tran 99.2 1.4E-11 3E-16 101.8 2.4 72 148-219 18-92 (211)
223 PRK13640 cbiO cobalt transport 99.2 1.7E-11 3.6E-16 105.9 3.0 81 117-208 6-93 (282)
224 PRK14248 phosphate ABC transpo 99.1 1.4E-11 3E-16 105.6 2.4 91 117-219 22-123 (268)
225 cd03230 ABC_DR_subfamily_A Thi 99.1 6.2E-12 1.3E-16 100.9 0.1 82 119-212 3-86 (173)
226 PRK13645 cbiO cobalt transport 99.1 8.5E-12 1.8E-16 108.1 1.0 82 116-208 6-99 (289)
227 PRK14235 phosphate transporter 99.1 7.2E-12 1.6E-16 107.4 0.5 93 115-219 18-121 (267)
228 PRK11831 putative ABC transpor 99.1 8.9E-12 1.9E-16 106.9 1.0 84 117-212 8-97 (269)
229 PRK11231 fecE iron-dicitrate t 99.1 1.5E-11 3.2E-16 104.6 2.3 82 118-211 4-88 (255)
230 TIGR00968 3a0106s01 sulfate AB 99.1 9.5E-12 2E-16 104.7 1.1 81 119-211 3-84 (237)
231 cd03233 ABC_PDR_domain1 The pl 99.1 4.4E-12 9.6E-17 104.3 -1.0 84 117-211 4-95 (202)
232 TIGR01277 thiQ thiamine ABC tr 99.1 1.9E-11 4.1E-16 101.2 2.6 72 148-219 18-92 (213)
233 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.1 1.4E-11 3E-16 103.7 1.8 91 119-220 3-99 (238)
234 cd03223 ABCD_peroxisomal_ALDP 99.1 1.7E-11 3.7E-16 97.7 2.2 74 119-211 3-76 (166)
235 cd03248 ABCC_TAP TAP, the Tran 99.1 1.4E-11 3E-16 102.9 1.7 94 115-219 10-109 (226)
236 PRK11614 livF leucine/isoleuci 99.1 1.7E-11 3.7E-16 103.1 2.2 83 117-211 6-92 (237)
237 PRK14268 phosphate ABC transpo 99.1 2.4E-11 5.3E-16 103.5 3.2 91 116-218 12-113 (258)
238 PRK13539 cytochrome c biogenes 99.1 1.7E-11 3.8E-16 101.1 2.2 81 119-211 5-85 (207)
239 cd03369 ABCC_NFT1 Domain 2 of 99.1 1.3E-11 2.8E-16 101.8 1.3 91 117-218 7-102 (207)
240 TIGR01186 proV glycine betaine 99.1 7.5E-11 1.6E-15 105.1 6.3 96 148-243 13-120 (363)
241 PRK14257 phosphate ABC transpo 99.1 1E-11 2.2E-16 109.5 0.6 94 115-219 79-184 (329)
242 PRK10253 iron-enterobactin tra 99.1 2.7E-11 5.8E-16 103.7 3.2 84 116-211 7-93 (265)
243 PRK14240 phosphate transporter 99.1 1.9E-11 4.1E-16 103.6 2.2 91 117-219 4-105 (250)
244 PRK14249 phosphate ABC transpo 99.1 1.7E-11 3.6E-16 104.1 1.8 91 117-219 5-106 (251)
245 PRK09984 phosphonate/organopho 99.1 2.7E-11 5.9E-16 103.4 3.1 91 117-219 5-108 (262)
246 PRK14264 phosphate ABC transpo 99.1 2.5E-11 5.4E-16 106.0 2.9 103 105-219 33-147 (305)
247 TIGR02769 nickel_nikE nickel i 99.1 2.3E-11 5E-16 104.1 2.5 67 131-208 25-97 (265)
248 cd03229 ABC_Class3 This class 99.1 8.5E-12 1.8E-16 100.5 -0.2 81 119-211 3-88 (178)
249 cd03231 ABC_CcmA_heme_exporter 99.1 3.4E-11 7.4E-16 98.8 3.4 81 119-211 3-85 (201)
250 cd03299 ABC_ModC_like Archeal 99.1 2.3E-11 5E-16 102.3 2.3 80 119-211 3-83 (235)
251 PRK14262 phosphate ABC transpo 99.1 2.9E-11 6.4E-16 102.4 2.8 83 117-211 4-96 (250)
252 TIGR01189 ccmA heme ABC export 99.1 2.2E-11 4.7E-16 99.7 2.0 81 119-211 3-85 (198)
253 TIGR02324 CP_lyasePhnL phospho 99.1 3.2E-11 6.8E-16 100.6 2.9 70 131-211 22-102 (224)
254 PRK13642 cbiO cobalt transport 99.1 2.5E-11 5.5E-16 104.5 2.3 81 117-208 5-90 (277)
255 PRK14270 phosphate ABC transpo 99.1 2E-11 4.3E-16 103.6 1.6 90 117-218 5-105 (251)
256 COG4181 Predicted ABC-type tra 99.1 4.7E-11 1E-15 94.0 3.6 97 148-244 30-138 (228)
257 CHL00206 ycf2 Ycf2; Provisiona 99.1 8E-11 1.7E-15 119.5 6.1 78 144-221 1620-1747(2281)
258 cd03288 ABCC_SUR2 The SUR doma 99.1 2.7E-11 5.8E-16 103.2 2.3 94 114-218 17-115 (257)
259 TIGR03873 F420-0_ABC_ATP propo 99.1 3.3E-11 7.2E-16 102.6 2.8 80 118-209 3-85 (256)
260 PRK14238 phosphate transporter 99.1 3.2E-11 6.9E-16 103.6 2.7 91 117-219 25-126 (271)
261 COG4615 PvdE ABC-type sideroph 99.1 2.1E-10 4.6E-15 100.9 7.7 89 114-213 320-411 (546)
262 PRK11300 livG leucine/isoleuci 99.1 1.6E-11 3.5E-16 104.3 0.8 91 117-219 6-102 (255)
263 COG4604 CeuD ABC-type enteroch 99.1 1E-10 2.3E-15 94.1 5.2 112 119-242 4-125 (252)
264 PRK14251 phosphate ABC transpo 99.1 2E-11 4.4E-16 103.5 1.2 90 117-218 5-105 (251)
265 PRK14260 phosphate ABC transpo 99.1 2E-11 4.2E-16 104.2 1.1 92 116-219 7-109 (259)
266 PRK10771 thiQ thiamine transpo 99.1 3.9E-11 8.4E-16 100.6 2.8 64 148-211 19-83 (232)
267 TIGR01978 sufC FeS assembly AT 99.1 5.2E-11 1.1E-15 100.4 3.6 81 119-211 3-89 (243)
268 PRK14271 phosphate ABC transpo 99.1 2.4E-11 5.3E-16 104.6 1.6 92 116-219 21-122 (276)
269 PRK14253 phosphate ABC transpo 99.1 3.9E-11 8.5E-16 101.6 2.9 90 118-219 5-104 (249)
270 PRK14256 phosphate ABC transpo 99.1 2.8E-11 6.1E-16 102.7 2.0 84 117-212 5-98 (252)
271 PRK14244 phosphate ABC transpo 99.1 2.5E-11 5.4E-16 103.0 1.6 88 119-218 8-106 (251)
272 TIGR01271 CFTR_protein cystic 99.1 5E-11 1.1E-15 123.0 4.0 64 148-221 446-510 (1490)
273 COG1119 ModF ABC-type molybden 99.1 6.6E-11 1.4E-15 98.1 3.9 78 116-205 31-112 (257)
274 PRK14275 phosphate ABC transpo 99.1 2E-11 4.4E-16 105.6 0.9 92 116-219 39-141 (286)
275 PRK13547 hmuV hemin importer A 99.1 7.6E-11 1.7E-15 101.3 4.4 80 118-209 3-93 (272)
276 PRK14243 phosphate transporter 99.1 4.3E-11 9.3E-16 102.4 2.8 91 117-219 11-112 (264)
277 PRK10419 nikE nickel transport 99.1 4.2E-11 9.1E-16 102.7 2.7 80 118-208 5-98 (268)
278 PRK14236 phosphate transporter 99.1 3E-11 6.6E-16 103.7 1.7 93 115-219 24-127 (272)
279 COG0410 LivF ABC-type branched 99.1 3.7E-11 8E-16 98.8 2.0 82 118-211 5-90 (237)
280 PRK15112 antimicrobial peptide 99.1 5.9E-11 1.3E-15 101.7 3.4 82 117-209 5-97 (267)
281 TIGR03740 galliderm_ABC gallid 99.1 1.9E-11 4.2E-16 101.8 0.3 80 119-211 3-82 (223)
282 cd03232 ABC_PDR_domain2 The pl 99.1 1.8E-11 3.9E-16 99.9 0.1 82 118-211 5-91 (192)
283 PRK14246 phosphate ABC transpo 99.1 6.9E-11 1.5E-15 100.8 3.5 92 116-219 10-112 (257)
284 PRK14261 phosphate ABC transpo 99.1 3.7E-11 8E-16 102.1 1.9 91 117-219 7-108 (253)
285 TIGR02881 spore_V_K stage V sp 99.1 6.4E-10 1.4E-14 95.0 9.4 100 119-220 5-119 (261)
286 PRK15056 manganese/iron transp 99.1 9.8E-12 2.1E-16 106.8 -2.2 82 117-209 7-88 (272)
287 PRK14254 phosphate ABC transpo 99.1 4.7E-11 1E-15 103.3 1.8 90 117-218 40-140 (285)
288 PRK11022 dppD dipeptide transp 99.1 5.9E-11 1.3E-15 104.6 2.4 114 118-242 5-140 (326)
289 cd03214 ABC_Iron-Siderophores_ 99.1 4.5E-11 9.8E-16 96.4 1.3 76 119-206 2-80 (180)
290 PRK15079 oligopeptide ABC tran 99.1 4.2E-11 9.2E-16 105.6 1.2 61 148-208 41-107 (331)
291 PRK14266 phosphate ABC transpo 99.1 4.7E-11 1E-15 101.2 1.4 90 118-219 5-105 (250)
292 COG3840 ThiQ ABC-type thiamine 99.1 6E-11 1.3E-15 94.3 1.9 95 148-242 19-119 (231)
293 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.1 6.4E-11 1.4E-15 92.2 2.0 87 119-217 3-99 (144)
294 PRK10418 nikD nickel transport 99.1 5.8E-11 1.3E-15 101.0 2.0 80 117-209 5-89 (254)
295 PRK11308 dppF dipeptide transp 99.0 4.2E-11 9.1E-16 105.5 1.0 67 131-208 29-101 (327)
296 PRK14272 phosphate ABC transpo 99.0 4.4E-11 9.5E-16 101.5 1.0 83 118-212 6-98 (252)
297 COG4178 ABC-type uncharacteriz 99.0 1.8E-10 3.9E-15 107.1 5.0 64 114-188 390-453 (604)
298 PRK14258 phosphate ABC transpo 99.0 6.3E-11 1.4E-15 101.2 1.8 92 116-219 7-109 (261)
299 PRK14245 phosphate ABC transpo 99.0 4.6E-11 9.9E-16 101.3 0.9 90 118-219 5-105 (250)
300 PRK11701 phnK phosphonate C-P 99.0 9.7E-11 2.1E-15 99.8 2.9 80 117-208 7-98 (258)
301 PRK10762 D-ribose transporter 99.0 5E-11 1.1E-15 110.8 1.2 83 117-211 5-91 (501)
302 cd03215 ABC_Carb_Monos_II This 99.0 6.1E-11 1.3E-15 95.9 1.5 75 117-207 5-83 (182)
303 cd03297 ABC_ModC_molybdenum_tr 99.0 1.1E-10 2.4E-15 96.7 3.0 63 148-211 18-87 (214)
304 PRK14239 phosphate transporter 99.0 8.2E-11 1.8E-15 99.8 2.3 91 117-219 6-107 (252)
305 cd03216 ABC_Carb_Monos_I This 99.0 2.2E-11 4.8E-16 96.8 -1.4 61 119-191 3-63 (163)
306 PRK14265 phosphate ABC transpo 99.0 9E-11 1.9E-15 101.0 2.2 92 116-219 20-122 (274)
307 KOG0742|consensus 99.0 1.2E-09 2.5E-14 96.6 8.9 120 116-240 351-479 (630)
308 cd03267 ABC_NatA_like Similar 99.0 2.5E-10 5.3E-15 96.1 4.4 64 148-211 41-107 (236)
309 PRK13541 cytochrome c biogenes 99.0 1.1E-10 2.4E-15 95.3 2.2 60 148-208 20-79 (195)
310 PF00005 ABC_tran: ABC transpo 99.0 1.3E-10 2.9E-15 89.1 2.2 64 148-211 5-71 (137)
311 TIGR02323 CP_lyasePhnK phospho 99.0 2.2E-10 4.7E-15 97.3 3.6 80 117-208 4-95 (253)
312 PRK14255 phosphate ABC transpo 99.0 1.4E-10 3.1E-15 98.4 2.2 87 117-215 6-102 (252)
313 PRK14252 phosphate ABC transpo 99.0 1.6E-10 3.5E-15 98.8 2.6 92 116-219 16-120 (265)
314 TIGR02770 nickel_nikD nickel i 99.0 3.8E-10 8.2E-15 94.6 4.5 62 148-209 6-72 (230)
315 PRK10070 glycine betaine trans 99.0 5.5E-10 1.2E-14 100.8 5.8 95 148-242 48-154 (400)
316 PRK14263 phosphate ABC transpo 99.0 1.7E-10 3.7E-15 98.5 2.4 90 118-219 10-110 (261)
317 KOG0054|consensus 99.0 2.6E-10 5.6E-15 114.5 3.9 80 132-232 536-616 (1381)
318 PRK13549 xylose transporter AT 99.0 1.4E-10 3.1E-15 107.9 2.0 83 117-211 6-94 (506)
319 PRK11144 modC molybdate transp 99.0 4E-10 8.6E-15 100.3 4.7 92 148-242 18-118 (352)
320 TIGR01184 ntrCD nitrate transp 99.0 2.4E-10 5.1E-15 95.8 3.1 63 148-212 5-67 (230)
321 PRK09700 D-allose transporter 99.0 1.3E-10 2.7E-15 108.4 1.5 83 117-211 6-92 (510)
322 PTZ00243 ABC transporter; Prov 99.0 2.8E-10 6E-15 117.8 4.1 64 148-221 680-744 (1560)
323 cd03217 ABC_FeS_Assembly ABC-t 99.0 7E-11 1.5E-15 97.0 -0.3 81 119-211 3-89 (200)
324 TIGR02142 modC_ABC molybdenum 99.0 3.9E-10 8.4E-15 100.5 4.3 95 148-242 17-121 (354)
325 PRK09473 oppD oligopeptide tra 99.0 1.7E-10 3.7E-15 101.8 2.0 81 117-208 13-106 (330)
326 PRK11288 araG L-arabinose tran 99.0 1.1E-10 2.5E-15 108.4 0.7 83 117-211 5-91 (501)
327 TIGR03415 ABC_choXWV_ATP choli 99.0 8E-10 1.7E-14 99.1 5.9 96 148-243 44-155 (382)
328 CHL00181 cbbX CbbX; Provisiona 99.0 2.6E-09 5.7E-14 92.5 8.9 118 121-241 24-156 (287)
329 PRK10982 galactose/methyl gala 99.0 2.8E-10 6E-15 105.6 2.9 80 120-211 2-85 (491)
330 TIGR02880 cbbX_cfxQ probable R 99.0 2.6E-09 5.5E-14 92.4 8.7 118 121-241 23-155 (284)
331 TIGR00955 3a01204 The Eye Pigm 99.0 5.1E-10 1.1E-14 106.6 4.7 103 130-243 38-151 (617)
332 PRK15439 autoinducer 2 ABC tra 99.0 2.9E-10 6.4E-15 105.9 2.9 83 117-211 12-98 (510)
333 COG0411 LivG ABC-type branched 99.0 2.2E-10 4.7E-15 95.0 1.8 80 120-211 8-91 (250)
334 TIGR03771 anch_rpt_ABC anchore 99.0 1.4E-09 2.9E-14 90.8 6.6 59 150-210 2-60 (223)
335 COG4161 ArtP ABC-type arginine 99.0 1.4E-09 3E-14 85.1 6.0 114 119-244 5-133 (242)
336 cd03291 ABCC_CFTR1 The CFTR su 98.9 3.3E-10 7.2E-15 97.8 2.6 74 114-211 37-110 (282)
337 PRK09580 sufC cysteine desulfu 98.9 2E-10 4.4E-15 97.1 1.0 81 118-210 3-89 (248)
338 PRK03695 vitamin B12-transport 98.9 1.7E-09 3.7E-14 91.7 6.5 61 148-209 16-79 (248)
339 PLN03211 ABC transporter G-25; 98.9 5.1E-10 1.1E-14 107.1 3.6 94 148-242 88-191 (659)
340 PRK09544 znuC high-affinity zi 98.9 1.5E-10 3.3E-15 98.3 0.0 74 117-210 5-78 (251)
341 TIGR01257 rim_protein retinal- 98.9 3E-10 6.5E-15 118.6 1.9 95 148-242 1959-2060(2272)
342 PRK10535 macrolide transporter 98.9 4.5E-10 9.7E-15 107.5 3.0 84 117-211 5-98 (648)
343 PRK10938 putative molybdenum t 98.9 4.7E-10 1E-14 104.1 2.9 80 117-208 4-86 (490)
344 cd03236 ABC_RNaseL_inhibitor_d 98.9 2.2E-09 4.8E-14 91.4 6.8 54 121-186 5-58 (255)
345 TIGR01257 rim_protein retinal- 98.9 3.9E-10 8.4E-15 117.8 2.1 116 117-243 929-1052(2272)
346 COG4148 ModC ABC-type molybdat 98.9 7.3E-10 1.6E-14 93.6 3.2 64 148-211 18-88 (352)
347 TIGR02633 xylG D-xylose ABC tr 98.9 4.3E-10 9.4E-15 104.5 1.9 81 119-211 4-90 (500)
348 TIGR03269 met_CoM_red_A2 methy 98.9 8.7E-10 1.9E-14 103.0 3.2 58 119-188 3-62 (520)
349 COG1123 ATPase components of v 98.9 1.8E-09 3.9E-14 99.4 5.1 96 148-243 311-419 (539)
350 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.9 3.1E-09 6.6E-14 88.8 6.0 62 118-191 24-85 (224)
351 PRK10261 glutathione transport 98.9 5.1E-10 1.1E-14 106.7 0.7 61 148-208 344-410 (623)
352 cd00267 ABC_ATPase ABC (ATP-bi 98.9 6.2E-10 1.3E-14 87.7 1.0 43 148-190 19-61 (157)
353 TIGR03269 met_CoM_red_A2 methy 98.9 1.2E-09 2.7E-14 102.0 3.1 64 148-211 304-377 (520)
354 PRK15134 microcin C ABC transp 98.9 1.3E-09 2.7E-14 102.1 3.1 80 117-208 276-371 (529)
355 COG4598 HisP ABC-type histidin 98.8 6.2E-09 1.3E-13 82.9 6.1 107 136-242 12-142 (256)
356 TIGR00956 3a01205 Pleiotropic 98.8 9.1E-10 2E-14 113.0 1.8 113 118-242 761-887 (1394)
357 COG2255 RuvB Holliday junction 98.8 8.5E-09 1.9E-13 87.3 7.2 99 113-220 19-117 (332)
358 CHL00131 ycf16 sulfate ABC tra 98.8 7.7E-10 1.7E-14 93.8 0.9 83 117-211 8-96 (252)
359 PRK15134 microcin C ABC transp 98.8 1.5E-09 3.2E-14 101.7 2.7 81 117-208 6-101 (529)
360 COG1129 MglA ABC-type sugar tr 98.8 2.2E-09 4.8E-14 98.0 3.6 114 117-242 9-135 (500)
361 PRK09700 D-allose transporter 98.8 1.1E-09 2.3E-14 102.1 1.5 60 148-207 283-346 (510)
362 COG0396 sufC Cysteine desulfur 98.8 1.3E-09 2.7E-14 89.7 1.7 80 119-209 6-91 (251)
363 PRK15093 antimicrobial peptide 98.8 6.6E-10 1.4E-14 98.1 -0.1 81 118-209 5-99 (330)
364 COG4586 ABC-type uncharacteriz 98.8 1.1E-08 2.3E-13 86.3 7.0 43 148-190 44-86 (325)
365 COG2256 MGS1 ATPase related to 98.8 3.3E-09 7.1E-14 93.6 4.0 96 111-221 15-119 (436)
366 cd03222 ABC_RNaseL_inhibitor T 98.8 8.3E-09 1.8E-13 83.1 6.0 68 149-216 20-99 (177)
367 PRK10261 glutathione transport 98.8 1.8E-09 3.9E-14 103.0 2.4 63 116-189 12-77 (623)
368 PRK13549 xylose transporter AT 98.8 1.4E-09 2.9E-14 101.4 1.6 81 117-208 260-347 (506)
369 PRK00080 ruvB Holliday junctio 98.8 1.6E-08 3.6E-13 89.1 8.3 99 112-219 17-115 (328)
370 KOG0060|consensus 98.8 4.8E-09 1E-13 96.1 4.9 90 115-220 432-523 (659)
371 PRK10938 putative molybdenum t 98.8 2E-09 4.4E-14 99.8 2.3 80 117-208 261-345 (490)
372 COG4175 ProV ABC-type proline/ 98.8 1.1E-08 2.5E-13 87.8 6.6 96 148-243 48-155 (386)
373 PRK10982 galactose/methyl gala 98.8 3.1E-09 6.8E-14 98.6 3.5 60 148-207 268-331 (491)
374 PRK04195 replication factor C 98.8 2.3E-08 5E-13 92.7 9.1 101 110-220 4-112 (482)
375 PRK11819 putative ABC transpor 98.8 7.6E-10 1.6E-14 104.2 -0.9 76 117-211 7-82 (556)
376 TIGR01187 potA spermidine/putr 98.8 4.9E-09 1.1E-13 92.4 4.1 84 159-242 1-90 (325)
377 COG0466 Lon ATP-dependent Lon 98.8 8E-09 1.7E-13 96.8 5.5 71 155-225 351-437 (782)
378 TIGR03719 ABC_ABC_ChvD ATP-bin 98.8 8E-10 1.7E-14 104.0 -1.2 76 117-211 5-80 (552)
379 TIGR02633 xylG D-xylose ABC tr 98.8 1.8E-09 4E-14 100.3 1.0 61 148-208 280-345 (500)
380 COG1134 TagH ABC-type polysacc 98.8 7.4E-09 1.6E-13 86.0 4.3 42 148-189 47-88 (249)
381 PLN03140 ABC transporter G fam 98.8 2.9E-09 6.3E-14 109.5 2.3 95 148-242 900-1004(1470)
382 TIGR00635 ruvB Holliday juncti 98.7 2.5E-08 5.4E-13 86.8 7.2 94 118-220 2-95 (305)
383 PRK11288 araG L-arabinose tran 98.7 7.7E-09 1.7E-13 96.2 4.1 61 148-208 273-337 (501)
384 PRK05342 clpX ATP-dependent pr 98.7 6.1E-08 1.3E-12 87.8 9.6 88 154-241 108-212 (412)
385 KOG0061|consensus 98.7 6.9E-09 1.5E-13 98.5 3.2 103 130-243 43-156 (613)
386 PRK10636 putative ABC transpor 98.7 3.3E-09 7.2E-14 101.4 0.6 60 118-189 3-62 (638)
387 COG4608 AppF ABC-type oligopep 98.7 1.4E-08 3E-13 85.8 4.2 45 148-192 33-77 (268)
388 TIGR00763 lon ATP-dependent pr 98.7 5.7E-08 1.2E-12 94.9 9.0 69 153-221 346-429 (775)
389 COG4778 PhnL ABC-type phosphon 98.7 2E-08 4.3E-13 79.3 4.6 96 148-243 31-142 (235)
390 COG4136 ABC-type uncharacteriz 98.7 6.8E-09 1.5E-13 80.4 1.9 64 148-211 22-89 (213)
391 COG4133 CcmA ABC-type transpor 98.7 1.5E-08 3.3E-13 81.0 3.9 58 148-205 22-81 (209)
392 PRK13342 recombination factor 98.7 3E-08 6.5E-13 90.1 6.3 96 112-219 4-105 (413)
393 COG3845 ABC-type uncharacteriz 98.7 2.8E-08 6E-13 89.8 5.6 75 148-222 24-104 (501)
394 PLN03025 replication factor C 98.7 4.3E-08 9.3E-13 86.1 6.8 98 110-220 3-113 (319)
395 PRK11147 ABC transporter ATPas 98.7 5E-09 1.1E-13 100.2 0.5 61 117-189 4-64 (635)
396 cd00820 PEPCK_HprK Phosphoenol 98.7 6.4E-09 1.4E-13 76.5 0.8 64 148-219 9-76 (107)
397 PRK15177 Vi polysaccharide exp 98.6 1E-08 2.2E-13 85.0 1.9 42 148-189 7-49 (213)
398 PLN03140 ABC transporter G fam 98.6 1.5E-08 3.4E-13 104.2 3.4 70 149-218 186-263 (1470)
399 KOG2004|consensus 98.6 1.3E-07 2.7E-12 88.8 9.0 70 152-221 436-520 (906)
400 PRK14956 DNA polymerase III su 98.6 4E-08 8.7E-13 89.9 5.6 59 110-180 8-66 (484)
401 COG4167 SapF ABC-type antimicr 98.6 7.4E-08 1.6E-12 77.0 6.4 60 148-207 33-95 (267)
402 PRK10762 D-ribose transporter 98.6 1.5E-08 3.2E-13 94.3 2.9 61 148-208 272-336 (501)
403 PRK14962 DNA polymerase III su 98.6 5.5E-08 1.2E-12 89.6 6.3 58 111-180 5-62 (472)
404 TIGR02639 ClpA ATP-dependent C 98.6 1.2E-07 2.6E-12 92.1 8.8 69 154-222 203-290 (731)
405 PRK15064 ABC transporter ATP-b 98.6 6.5E-09 1.4E-13 97.4 0.1 60 118-189 3-62 (530)
406 PRK15064 ABC transporter ATP-b 98.6 1.1E-08 2.5E-13 95.7 1.2 73 116-208 319-391 (530)
407 KOG0927|consensus 98.6 2.5E-08 5.3E-13 90.9 3.3 65 113-188 386-450 (614)
408 TIGR00382 clpX endopeptidase C 98.6 2.1E-07 4.5E-12 84.2 9.2 87 155-241 117-220 (413)
409 COG0444 DppD ABC-type dipeptid 98.6 3E-08 6.5E-13 85.6 3.3 102 131-243 19-141 (316)
410 COG1219 ClpX ATP-dependent pro 98.6 1.5E-07 3.2E-12 81.0 7.5 87 155-241 98-201 (408)
411 PRK14961 DNA polymerase III su 98.6 8.3E-08 1.8E-12 85.9 6.0 57 111-179 7-63 (363)
412 cd03237 ABC_RNaseL_inhibitor_d 98.6 2.1E-08 4.5E-13 85.0 2.1 41 150-190 21-61 (246)
413 PRK13546 teichoic acids export 98.6 2.1E-08 4.6E-13 85.8 2.1 42 148-189 44-85 (264)
414 KOG0059|consensus 98.6 7E-08 1.5E-12 95.4 5.8 95 148-242 585-688 (885)
415 PHA02544 44 clamp loader, smal 98.6 1.5E-07 3.2E-12 82.4 7.1 95 110-218 11-112 (316)
416 PRK13545 tagH teichoic acids e 98.6 1.1E-08 2.4E-13 94.5 -0.0 63 117-190 22-86 (549)
417 smart00382 AAA ATPases associa 98.6 8E-08 1.7E-12 72.3 4.6 68 154-221 2-93 (148)
418 TIGR00956 3a01205 Pleiotropic 98.5 2.7E-08 5.8E-13 102.4 2.2 96 148-243 81-195 (1394)
419 PRK10787 DNA-binding ATP-depen 98.5 3.9E-07 8.4E-12 88.8 10.0 69 153-221 348-431 (784)
420 PLN03073 ABC transporter F fam 98.5 1.3E-08 2.9E-13 98.1 -0.1 73 117-208 509-581 (718)
421 PRK10636 putative ABC transpor 98.5 1.6E-08 3.5E-13 96.7 0.5 61 117-189 313-373 (638)
422 PRK07003 DNA polymerase III su 98.5 1.6E-07 3.5E-12 89.7 6.9 98 111-220 7-133 (830)
423 PRK14958 DNA polymerase III su 98.5 1.1E-07 2.3E-12 88.5 5.5 99 110-220 6-133 (509)
424 COG1101 PhnK ABC-type uncharac 98.5 3.8E-07 8.2E-12 74.7 7.9 82 130-222 19-109 (263)
425 PRK14949 DNA polymerase III su 98.5 1.7E-07 3.7E-12 91.0 7.0 59 111-181 7-65 (944)
426 PRK15439 autoinducer 2 ABC tra 98.5 3.2E-08 7E-13 92.3 2.0 60 148-207 283-346 (510)
427 KOG2028|consensus 98.5 1.2E-07 2.5E-12 83.1 4.9 65 157-221 165-237 (554)
428 TIGR03719 ABC_ABC_ChvD ATP-bin 98.5 2.6E-08 5.6E-13 93.8 0.9 72 117-208 323-394 (552)
429 COG0488 Uup ATPase components 98.5 2.6E-08 5.7E-13 92.6 0.9 63 116-189 321-383 (530)
430 PRK11147 ABC transporter ATPas 98.5 2.2E-08 4.7E-13 95.8 0.2 71 117-207 320-390 (635)
431 PRK14960 DNA polymerase III su 98.5 1.7E-07 3.8E-12 88.4 6.2 97 111-219 6-131 (702)
432 PRK11819 putative ABC transpor 98.5 2.5E-08 5.5E-13 94.0 0.6 72 117-208 325-396 (556)
433 COG0488 Uup ATPase components 98.5 2.8E-08 6.1E-13 92.4 0.9 61 117-189 4-64 (530)
434 COG4674 Uncharacterized ABC-ty 98.5 6.3E-08 1.4E-12 78.1 2.6 87 119-217 8-104 (249)
435 PRK13409 putative ATPase RIL; 98.5 2.8E-08 6E-13 94.1 0.5 36 151-186 96-131 (590)
436 PRK13409 putative ATPase RIL; 98.5 4.7E-08 1E-12 92.6 1.5 51 148-208 359-409 (590)
437 PRK12323 DNA polymerase III su 98.5 3E-07 6.4E-12 86.7 6.5 58 111-180 7-64 (700)
438 COG1123 ATPase components of v 98.4 2.9E-07 6.2E-12 85.0 5.9 102 131-243 23-143 (539)
439 PRK07940 DNA polymerase III su 98.4 5.2E-07 1.1E-11 81.4 7.4 99 119-220 4-131 (394)
440 PRK06645 DNA polymerase III su 98.4 4.6E-07 1E-11 84.0 7.0 62 107-180 8-69 (507)
441 PF07724 AAA_2: AAA domain (Cd 98.4 2E-07 4.3E-12 74.7 3.9 87 156-242 5-105 (171)
442 KOG1969|consensus 98.4 6.6E-07 1.4E-11 84.3 7.8 107 110-217 261-398 (877)
443 PRK14964 DNA polymerase III su 98.4 3.8E-07 8.1E-12 84.1 6.0 98 111-220 4-130 (491)
444 PRK13341 recombination factor 98.4 2.7E-07 5.9E-12 89.0 5.3 97 111-219 19-122 (725)
445 TIGR00602 rad24 checkpoint pro 98.4 1.9E-07 4.1E-12 88.6 4.0 65 109-181 73-137 (637)
446 CHL00095 clpC Clp protease ATP 98.4 6E-07 1.3E-11 88.3 7.5 72 151-222 197-287 (821)
447 KOG0989|consensus 98.4 2.2E-07 4.8E-12 79.5 3.8 59 109-180 25-83 (346)
448 PRK14970 DNA polymerase III su 98.4 6.1E-07 1.3E-11 80.3 6.7 97 111-219 8-121 (367)
449 TIGR02397 dnaX_nterm DNA polym 98.4 7.3E-07 1.6E-11 79.2 6.6 58 110-179 4-61 (355)
450 PRK14955 DNA polymerase III su 98.4 5.9E-07 1.3E-11 81.3 6.1 58 111-180 7-64 (397)
451 PRK14957 DNA polymerase III su 98.4 3.9E-07 8.5E-12 85.1 4.9 58 111-180 7-64 (546)
452 PRK10865 protein disaggregatio 98.4 1.2E-06 2.5E-11 86.4 8.4 68 155-222 200-287 (857)
453 TIGR00390 hslU ATP-dependent p 98.4 3.6E-07 7.8E-12 82.2 4.3 80 153-237 46-133 (441)
454 TIGR03345 VI_ClpV1 type VI sec 98.4 1.2E-06 2.6E-11 86.3 8.1 68 155-222 209-296 (852)
455 PRK14963 DNA polymerase III su 98.4 1.3E-06 2.9E-11 81.2 7.9 56 112-179 6-61 (504)
456 cd00009 AAA The AAA+ (ATPases 98.3 9.8E-07 2.1E-11 67.0 5.9 66 153-218 18-96 (151)
457 PRK08691 DNA polymerase III su 98.3 4.6E-07 1E-11 86.1 4.8 97 111-219 7-132 (709)
458 PRK14959 DNA polymerase III su 98.3 1.2E-06 2.6E-11 82.6 7.6 59 110-180 6-64 (624)
459 PRK12402 replication factor C 98.3 6.3E-07 1.4E-11 78.9 5.3 58 110-180 5-62 (337)
460 TIGR03420 DnaA_homol_Hda DnaA 98.3 5.2E-07 1.1E-11 74.9 4.5 92 117-220 12-104 (226)
461 PF03215 Rad17: Rad17 cell cyc 98.3 8.4E-07 1.8E-11 82.6 6.0 67 110-184 9-75 (519)
462 PRK07994 DNA polymerase III su 98.3 5.4E-07 1.2E-11 85.6 4.8 98 111-220 7-133 (647)
463 COG4107 PhnK ABC-type phosphon 98.3 5E-07 1.1E-11 71.8 3.6 96 148-243 26-141 (258)
464 PRK05896 DNA polymerase III su 98.3 8.7E-07 1.9E-11 83.2 5.8 58 110-179 6-63 (605)
465 PLN03073 ABC transporter F fam 98.3 1.1E-07 2.3E-12 92.0 -0.5 61 115-187 176-239 (718)
466 PRK14952 DNA polymerase III su 98.3 1.7E-06 3.7E-11 81.6 7.4 57 112-180 5-61 (584)
467 PRK14965 DNA polymerase III su 98.3 9.2E-07 2E-11 83.6 5.7 57 112-180 8-64 (576)
468 KOG0064|consensus 98.3 3.9E-07 8.5E-12 83.1 3.0 64 148-219 502-575 (728)
469 PRK07764 DNA polymerase III su 98.3 1.1E-06 2.4E-11 85.9 6.2 57 112-180 7-63 (824)
470 PRK14951 DNA polymerase III su 98.3 8.5E-07 1.8E-11 84.0 5.2 58 111-180 7-64 (618)
471 KOG0745|consensus 98.3 2.2E-06 4.7E-11 76.7 7.3 87 155-241 227-330 (564)
472 PRK14969 DNA polymerase III su 98.3 9.8E-07 2.1E-11 82.6 5.5 97 111-219 7-132 (527)
473 TIGR03238 dnd_assoc_3 dnd syst 98.3 9.2E-07 2E-11 80.6 5.1 42 148-191 26-68 (504)
474 cd03238 ABC_UvrA The excision 98.3 3.2E-07 6.9E-12 73.8 1.7 28 148-175 15-42 (176)
475 TIGR02858 spore_III_AA stage I 98.3 1.1E-06 2.3E-11 75.5 5.0 53 155-207 112-168 (270)
476 PRK14950 DNA polymerase III su 98.3 1.4E-06 3E-11 82.7 6.0 57 111-179 7-63 (585)
477 PF05673 DUF815: Protein of un 98.3 1.8E-06 3.9E-11 72.3 6.0 92 115-215 22-115 (249)
478 COG4172 ABC-type uncharacteriz 98.3 5.1E-07 1.1E-11 80.1 2.8 60 148-208 307-372 (534)
479 PRK06893 DNA replication initi 98.3 4.8E-07 1E-11 75.8 2.4 62 156-220 41-105 (229)
480 PRK00440 rfc replication facto 98.3 2.3E-06 4.9E-11 74.7 6.8 57 110-179 7-63 (319)
481 PRK06305 DNA polymerase III su 98.2 2.9E-06 6.2E-11 78.0 7.5 57 111-179 8-64 (451)
482 PRK08084 DNA replication initi 98.2 1.2E-06 2.5E-11 73.8 4.4 63 155-220 46-111 (235)
483 cd01130 VirB11-like_ATPase Typ 98.2 8.1E-07 1.8E-11 72.0 3.2 40 150-189 21-60 (186)
484 PRK14953 DNA polymerase III su 98.2 2E-06 4.3E-11 79.7 6.0 58 110-179 6-63 (486)
485 PRK07133 DNA polymerase III su 98.2 2.1E-06 4.6E-11 82.2 6.3 59 110-180 8-66 (725)
486 smart00763 AAA_PrkA PrkA AAA d 98.2 5.2E-06 1.1E-10 73.5 8.2 62 118-187 48-118 (361)
487 PRK08903 DnaA regulatory inact 98.2 2.8E-06 6.1E-11 70.9 6.2 89 115-218 13-102 (227)
488 PRK14948 DNA polymerase III su 98.2 3E-06 6.5E-11 80.7 7.0 99 109-219 5-134 (620)
489 KOG0991|consensus 98.2 7.3E-07 1.6E-11 73.9 2.3 98 110-220 17-127 (333)
490 PRK11034 clpA ATP-dependent Cl 98.2 4.9E-06 1.1E-10 80.8 7.9 69 154-222 207-294 (758)
491 PRK06647 DNA polymerase III su 98.2 2.4E-06 5.3E-11 80.4 5.6 96 112-219 8-132 (563)
492 KOG0066|consensus 98.2 8.5E-07 1.8E-11 79.5 2.4 59 117-186 587-645 (807)
493 PRK08451 DNA polymerase III su 98.2 5.8E-06 1.3E-10 77.1 7.6 57 111-179 5-61 (535)
494 TIGR01650 PD_CobS cobaltochela 98.1 4.2E-06 9.1E-11 73.2 6.2 38 152-189 62-99 (327)
495 TIGR03346 chaperone_ClpB ATP-d 98.1 6.5E-06 1.4E-10 81.3 8.2 68 154-221 194-281 (852)
496 PRK05563 DNA polymerase III su 98.1 3.2E-06 6.9E-11 79.7 5.6 56 112-179 8-63 (559)
497 KOG2355|consensus 98.1 6.5E-07 1.4E-11 72.9 0.0 62 117-189 14-75 (291)
498 PRK09111 DNA polymerase III su 98.1 7.2E-06 1.6E-10 77.7 6.7 63 106-180 10-72 (598)
499 PRK11034 clpA ATP-dependent Cl 98.1 2.1E-05 4.5E-10 76.4 10.0 63 156-219 490-570 (758)
500 PRK14954 DNA polymerase III su 98.1 7.9E-06 1.7E-10 77.6 6.9 57 112-180 8-64 (620)
No 1
>KOG0743|consensus
Probab=99.87 E-value=7.5e-22 Score=174.68 Aligned_cols=142 Identities=44% Similarity=0.810 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHHHhhcCceEEEecCCCceeecCCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcce
Q psy1371 78 GAAILRKARTLALKQYEGKTVMYTALGSEWRPFGHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGY 157 (244)
Q Consensus 78 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi 157 (244)
..++.++.++......+.....+......|.++..+.+ .+|+.+.++.+.++.+++++..+++..++|++.|.+++||+
T Consensus 160 ~k~I~~~~r~~kl~t~~~~~~~~~~~~~~W~~v~f~Hp-stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGY 238 (457)
T KOG0743|consen 160 AKEILEENRELKLYTNSGKTVIYTAKGGEWRSVGFPHP-STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGY 238 (457)
T ss_pred HHHHHHHHHHHHHhhcCCCcccccccCCcceecCCCCC-CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccc
Confidence 56666666666666666666677778899999887765 89999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHhhhcCCCCceehhhHhhhhcc
Q psy1371 158 LLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRLNHLLSVAPQNSIILLEDIDAAFVT 221 (244)
Q Consensus 158 ~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~q~~~lf~deid~~~~~ 221 (244)
+|||||||||||++.|+|++++.+.+.+.+.....+.+ +|+++..++..+++++++||+-+..
T Consensus 239 LLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~d-Lr~LL~~t~~kSIivIEDIDcs~~l 301 (457)
T KOG0743|consen 239 LLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSD-LRHLLLATPNKSILLIEDIDCSFDL 301 (457)
T ss_pred eeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHH-HHHHHHhCCCCcEEEEeeccccccc
Confidence 99999999999999999999999999999988776665 9999999999999999999987653
No 2
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.87 E-value=2.3e-23 Score=197.86 Aligned_cols=188 Identities=15% Similarity=0.156 Sum_probs=145.7
Q ss_pred CCcccchhHHHhhhhHHHHhhhcccccCeeecCCCCCcchhhHhhhhcCCCCccchhhhhhhHHHHHHHHHHHHHHHHHh
Q psy1371 13 NPYFGAGFGLFGLGAGAAILRKGKFRPGRESLPPPNVSMPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKARTLALKQ 92 (244)
Q Consensus 13 ~~~~~~~~~~~~~~~g~~~v~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 92 (244)
..++..++.++++|+|+++|+.|.+|+| ++++|..+.... ..|+.++......++...--.++..+.....
T Consensus 383 ~~~l~~l~~v~iL~~G~~lVl~~~lTlG--------~LiAf~~l~~~f-~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~ 453 (709)
T COG2274 383 KSLLQQLSSVLILWFGAILVLEGELTLG--------QLVAFNMLAGYF-ISPITRLSQLWTDFQQAKVALERLGDILDTP 453 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchH--------HHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3456667888999999999999999999 999999998888 9998777766666666443333333322211
Q ss_pred hcCceEEEecCCCceeecCCCCCCCCCCccccChhHH-HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHH
Q psy1371 93 YEGKTVMYTALGSEWRPFGHPKRRRPLNSVVLDSGVA-DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFI 171 (244)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~ 171 (244)
.+... +..........+.+++++|+|.|+.. ..+++++ ++.+++++.++++|+||||||||+
T Consensus 454 ~E~~~------~~~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~i-----------sL~I~~Ge~vaIvG~SGsGKSTL~ 516 (709)
T COG2274 454 PEQEG------DKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDL-----------SLEIPPGEKVAIVGRSGSGKSTLL 516 (709)
T ss_pred ccccc------ccccccccccCceEEEEEEEEEeCCCCcchhhce-----------eEEeCCCCEEEEECCCCCCHHHHH
Confidence 11000 00001113445678999999999765 3589999 999999999999999999999999
Q ss_pred HHHhcccCCCeEEEEeCCCCC---CHHHHHHHhhhcCCCCceehhhH-hhhhcccCcCc
Q psy1371 172 TALAGELEFGICVLNLSERGL---TDDRLNHLLSVAPQNSIILLEDI-DAAFVTREESS 226 (244)
Q Consensus 172 ~~la~~~~~~~g~i~~~~~~~---~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r~~~~ 226 (244)
|+++|++.|+.|.|.+++.+. +...+|+.+++++|++.+|...+ |+++......+
T Consensus 517 KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~ 575 (709)
T COG2274 517 KLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEAT 575 (709)
T ss_pred HHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCC
Confidence 999999999999999999544 55789999999999999999999 89988766554
No 3
>KOG0058|consensus
Probab=99.84 E-value=3.7e-22 Score=184.98 Aligned_cols=181 Identities=15% Similarity=0.134 Sum_probs=134.0
Q ss_pred ccchhHHHhhhhHHHHhhhcccccCeeecCCCCCcchhhHhhhhcCCCCccchhhhhhhHHHHHHHHHHHHHHHH--Hhh
Q psy1371 16 FGAGFGLFGLGAGAAILRKGKFRPGRESLPPPNVSMPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKARTLAL--KQY 93 (244)
Q Consensus 16 ~~~~~~~~~~~~g~~~v~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~l~~~~~~~~--~~~ 93 (244)
......+.++.+|++++..|+||.| .+++|+.|-... ..++..+... ..++|+-.-+... +-.
T Consensus 381 ~~~~~~~siL~~Gg~Lv~~g~mt~g--------~L~sFllY~~~~-g~sl~~ls~~------ys~lmkgvGAs~rvFel~ 445 (716)
T KOG0058|consen 381 LGNLAVLSILFYGGHLVLTGSLTSG--------ALSSFLLYQVQL-GSSLSGLSSF------YSELMKGVGASERVFELM 445 (716)
T ss_pred HHhHHHHHHHHhccchhhcCccchh--------HHHHHHHHHHHH-HHHHHHHHHH------HHHHHHhcchHHHHHHHh
Confidence 3345667888999999999999999 999999988777 6664444422 2223322111100 001
Q ss_pred cCceEEEecCCCceeecCCCCCCCCCCccccChhHH--HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHH
Q psy1371 94 EGKTVMYTALGSEWRPFGHPKRRRPLNSVVLDSGVA--DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFI 171 (244)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~ 171 (244)
+.+.... ......+. ...+.++|+||+|.|+.. .++++++ ++.+++|+.++|+||||+||||++
T Consensus 446 dr~P~i~--~~G~~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~l-----------sfti~pGe~vALVGPSGsGKSTia 511 (716)
T KOG0058|consen 446 DRKPRIP--LTGTLAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNL-----------SFTIRPGEVVALVGPSGSGKSTIA 511 (716)
T ss_pred ccCCCCC--CCCccccc-cccceEEEEEeeeecCCCCCchhhcCc-----------eeeeCCCCEEEEECCCCCCHHHHH
Confidence 1111111 11111122 456779999999999764 3599999 999999999999999999999999
Q ss_pred HHHhcccCCCeEEEEeCCCCC---CHHHHHHHhhhcCCCCceehhhH-hhhhcccCcC
Q psy1371 172 TALAGELEFGICVLNLSERGL---TDDRLNHLLSVAPQNSIILLEDI-DAAFVTREES 225 (244)
Q Consensus 172 ~~la~~~~~~~g~i~~~~~~~---~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r~~~ 225 (244)
.+|-++|.|+.|.|.++|.++ +...+|+.++.|-|+++||-..| ||+++.-++.
T Consensus 512 sLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~ 569 (716)
T KOG0058|consen 512 SLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNA 569 (716)
T ss_pred HHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCC
Confidence 999999999999999999554 55789999999999999999999 9999876633
No 4
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=7.4e-21 Score=163.81 Aligned_cols=128 Identities=23% Similarity=0.317 Sum_probs=104.2
Q ss_pred CCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC----
Q psy1371 114 KRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE---- 189 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~---- 189 (244)
.+..++++|-.-....+.+.+.|..++.+|++|+.+|+.+|+|++||||||||||.|+|++|+..+.++..+..++
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqK 224 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQK 224 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHH
Confidence 4456677776556666677788888899999999999999999999999999999999999999988776666554
Q ss_pred -CCCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCcCccc----HHHHHHHHHHhhh
Q psy1371 190 -RGLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREESSQG----LEDIDAAFVTREE 241 (244)
Q Consensus 190 -~~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~~~~~----~~~~~~~~l~~~~ 241 (244)
.++...-+|+.|.++. .+|++|+||||+++..|-++..+ .++..-++|.++|
T Consensus 225 YiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlD 283 (406)
T COG1222 225 YIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLD 283 (406)
T ss_pred HhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhcc
Confidence 4666677999999997 48999999999999998655433 4566666777766
No 5
>KOG0730|consensus
Probab=99.84 E-value=1e-20 Score=173.45 Aligned_cols=131 Identities=24% Similarity=0.353 Sum_probs=115.1
Q ss_pred CCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC--
Q psy1371 112 HPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE-- 189 (244)
Q Consensus 112 ~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~-- 189 (244)
.+.++++|+|+...++.|..+.+.|.+.+++++.|.++|+.+++||++|||||||||+++|++|.+.+.++..+...+
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~ 505 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELF 505 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHH
Confidence 345678999998888888888889999999999999999999999999999999999999999999998887775433
Q ss_pred ---CCCCHHHHHHHhhhcCC--CCceehhhHhhhhcccC-cCcccHHHHHHHHHHhhhc
Q psy1371 190 ---RGLTDDRLNHLLSVAPQ--NSIILLEDIDAAFVTRE-ESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 190 ---~~~~~~~~~~~~~~~~q--~~~lf~deid~~~~~r~-~~~~~~~~~~~~~l~~~~~ 242 (244)
.+.+++.+|+.|..+.| +|++|+||||+++..|+ ++....+++.+++|+.+|.
T Consensus 506 sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG 564 (693)
T KOG0730|consen 506 SKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDG 564 (693)
T ss_pred HHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccc
Confidence 67889999999999985 79999999999999995 3334468999999999885
No 6
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.83 E-value=3.1e-21 Score=179.98 Aligned_cols=184 Identities=17% Similarity=0.154 Sum_probs=131.5
Q ss_pred ccchhHHHhhhhHHHHhhhcccccCeeecCCCCCcchhhHhhhhcCCCCccchhhhhhhHHHHHHHHHHHHHHHHHhhcC
Q psy1371 16 FGAGFGLFGLGAGAAILRKGKFRPGRESLPPPNVSMPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKARTLALKQYEG 95 (244)
Q Consensus 16 ~~~~~~~~~~~~g~~~v~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 95 (244)
+..+..++++++|++++..|.+|+| .+++++.+...+ ..|+..+...+..+.+.....++..+..+...+.
T Consensus 247 ~~~~~~~~~~~~g~~~~~~g~~t~g--------~l~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~ 317 (529)
T TIGR02868 247 AAGLAVLGALWAGGPAVADGTLAPA--------TLAVLVLLPLAA-FEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPR 317 (529)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCChh--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 3444556777899999999999999 988888888777 7786666654444444332222222221110000
Q ss_pred ceEEEecCCCceeecCCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHh
Q psy1371 96 KTVMYTALGSEWRPFGHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALA 175 (244)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la 175 (244)
. ......-.........++++||+|.|+..+.+++++ ++.+++|+.++++||+|||||||+++|+
T Consensus 318 ~----~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~vL~~i-----------sl~i~~G~~vaIvG~SGsGKSTLl~lL~ 382 (529)
T TIGR02868 318 P----EGVVPAAGALGLGKPTLELRDLSFGYPGSPPVLDGV-----------SLDLPPGERVAILGPSGSGKSTLLMLLT 382 (529)
T ss_pred C----CCCCCCCcccCCCCceEEEEEEEEecCCCCceeecc-----------eEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 0 000000000011123588999999996544688999 9999999999999999999999999999
Q ss_pred cccCCCeEEEEeCCCCCC--HHHHHHHhhhcCCCCceehhhH-hhhhcccC
Q psy1371 176 GELEFGICVLNLSERGLT--DDRLNHLLSVAPQNSIILLEDI-DAAFVTRE 223 (244)
Q Consensus 176 ~~~~~~~g~i~~~~~~~~--~~~~~~~~~~~~q~~~lf~dei-d~~~~~r~ 223 (244)
|+++|+.|.+.+++.+.. .+.+|+.+++++|++.+|-+++ |++...++
T Consensus 383 g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~ 433 (529)
T TIGR02868 383 GLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRP 433 (529)
T ss_pred cCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCC
Confidence 999999999999994332 6778899999999999999999 99987654
No 7
>KOG0736|consensus
Probab=99.82 E-value=2.9e-20 Score=172.55 Aligned_cols=129 Identities=22% Similarity=0.392 Sum_probs=114.5
Q ss_pred CCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC---
Q psy1371 113 PKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE--- 189 (244)
Q Consensus 113 ~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~--- 189 (244)
+.+++.|+||-.-++.|..+++.|...+++++++ +.|+.+..|++||||||||||.++|++|.++...+-++...+
T Consensus 665 KIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLf-ssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLN 743 (953)
T KOG0736|consen 665 KIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELF-SSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLN 743 (953)
T ss_pred CCCccchhcccCHHHHHHHHHHHhcCcccChhhh-hccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHH
Confidence 3567899999888888999999999999999999 889999999999999999999999999999987766665443
Q ss_pred --CCCCHHHHHHHhhhcCC--CCceehhhHhhhhcccCcCccc---HHHHHHHHHHhhhc
Q psy1371 190 --RGLTDDRLNHLLSVAPQ--NSIILLEDIDAAFVTREESSQG---LEDIDAAFVTREES 242 (244)
Q Consensus 190 --~~~~~~~~~~~~~~~~q--~~~lf~deid~~~~~r~~~~~~---~~~~~~~~l~~~~~ 242 (244)
.+++++++|+.|..+++ ||++|+||+|+++..|+.+.++ .+|+.+++|..+|.
T Consensus 744 MYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDg 803 (953)
T KOG0736|consen 744 MYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDG 803 (953)
T ss_pred HHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhc
Confidence 68899999999999985 8999999999999999876554 68999999999885
No 8
>KOG0733|consensus
Probab=99.82 E-value=3.3e-20 Score=168.55 Aligned_cols=126 Identities=28% Similarity=0.465 Sum_probs=105.5
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC-----C
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE-----R 190 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~-----~ 190 (244)
.++|+++-........+.+.+ .++.+++.|..+|+.+++|++|+||||||||+|++++||+++.++..|.... .
T Consensus 186 nv~f~diGG~d~~~~el~~li-~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvS 264 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELI-IHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVS 264 (802)
T ss_pred CcchhhccChHHHHHHHHHHH-HHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccC
Confidence 455666655444444454444 4499999999999999999999999999999999999999999998887543 5
Q ss_pred CCCHHHHHHHhhhcCC--CCceehhhHhhhhcccCcCcccHH-HHHHHHHHhhhc
Q psy1371 191 GLTDDRLNHLLSVAPQ--NSIILLEDIDAAFVTREESSQGLE-DIDAAFVTREES 242 (244)
Q Consensus 191 ~~~~~~~~~~~~~~~q--~~~lf~deid~~~~~r~~~~~~~~-~~~~~~l~~~~~ 242 (244)
+++++.+|+.|..+.+ +|++|+||||++...|+..+.+.+ ++..+||+-+|-
T Consensus 265 GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~ 319 (802)
T KOG0733|consen 265 GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDE 319 (802)
T ss_pred cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhc
Confidence 7889999999999874 799999999999999988777665 999999998874
No 9
>KOG0056|consensus
Probab=99.82 E-value=1.7e-21 Score=173.38 Aligned_cols=168 Identities=17% Similarity=0.227 Sum_probs=132.8
Q ss_pred hHHHHhhhcccccCeeecCCCCCcchhhHhhhhcCCCCccchhhhhhhHHH-------HHHHHHHHHHHHHHhhcCceEE
Q psy1371 27 AGAAILRKGKFRPGRESLPPPNVSMPFMELIDSLSTNPYFGAGFGLFGLGA-------GAAILRKARTLALKQYEGKTVM 99 (244)
Q Consensus 27 ~g~~~v~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-------i~~~l~~~~~~~~~~~~~~~~~ 99 (244)
+.+|+|..+..|+| ..+-|..|+.++ .+|++-.+.....++. +.+++++..+..+.
T Consensus 463 l~aY~Vt~q~ltVG--------DfVlf~TYliqL-y~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~-------- 525 (790)
T KOG0056|consen 463 LCAYRVTEQTLTVG--------DFVLFLTYLIQL-YMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDL-------- 525 (790)
T ss_pred eeeeeeeecccccc--------ceehHHHHHHHH-hCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcC--------
Confidence 56799999999999 888889999998 9996665544444444 33333332222211
Q ss_pred EecCCCceeecCCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC
Q psy1371 100 YTALGSEWRPFGHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
++. -+.....+.++|++|+|.|+..+++++++ ++.+++|+.++++||+|+||||++|.+-++++
T Consensus 526 ---P~a--~pl~~~~G~i~fsnvtF~Y~p~k~vl~di-----------sF~v~pGktvAlVG~SGaGKSTimRlLfRffd 589 (790)
T KOG0056|consen 526 ---PGA--PPLKVTQGKIEFSNVTFAYDPGKPVLSDI-----------SFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD 589 (790)
T ss_pred ---CCC--CCccccCCeEEEEEeEEecCCCCceeecc-----------eEEecCCcEEEEECCCCCchhHHHHHHHHHhh
Confidence 110 01234567899999999998878899999 99999999999999999999999999999999
Q ss_pred CCeEEEEeCCCCC---CHHHHHHHhhhcCCCCceehhhH-hhhhcccCcCcc
Q psy1371 180 FGICVLNLSERGL---TDDRLNHLLSVAPQNSIILLEDI-DAAFVTREESSQ 227 (244)
Q Consensus 180 ~~~g~i~~~~~~~---~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r~~~~~ 227 (244)
.+.|.|.++|.++ +...+|+.++.|||+.++|-|+| +++...|...++
T Consensus 590 v~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~Asn 641 (790)
T KOG0056|consen 590 VNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASN 641 (790)
T ss_pred ccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCCh
Confidence 9999999999665 45789999999999999999999 899887765443
No 10
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.82 E-value=3.1e-21 Score=185.69 Aligned_cols=180 Identities=19% Similarity=0.193 Sum_probs=134.5
Q ss_pred ccchhHHHhhhhHHHHhhhcccccCeeecCCCCCcchhhHhhhhcCCCCccchhhhhhhHHHHHHHHHHHHHHHHHhhcC
Q psy1371 16 FGAGFGLFGLGAGAAILRKGKFRPGRESLPPPNVSMPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKARTLALKQYEG 95 (244)
Q Consensus 16 ~~~~~~~~~~~~g~~~v~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 95 (244)
+..+..++++++|++++.+|.+|+| .+++|+.+...+ ..|+..+...+..++.....+++..+......+.
T Consensus 388 ~~~~~~i~il~~g~~lv~~g~ls~G--------~lva~~~l~~~~-~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~ 458 (708)
T TIGR01193 388 TKLILNVVILWTGAYLVMRGKLTLG--------QLITFNALLSYF-LTPLENIINLQPKLQAARVANNRLNEVYLVDSEF 458 (708)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHH--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 3345667788899999999999999 999999988888 8887777765555555333333332221110000
Q ss_pred ceEEEecCCCceeecCCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHh
Q psy1371 96 KTVMYTALGSEWRPFGHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALA 175 (244)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la 175 (244)
.. ...........+.+++++|+|.|+..+.+++++ ++.+++|+.++|+||||||||||+++|+
T Consensus 459 ~~------~~~~~~~~~~~~~I~~~~vsf~y~~~~~iL~~i-----------sl~i~~G~~vaIvG~SGsGKSTLlklL~ 521 (708)
T TIGR01193 459 IN------KKKRTELNNLNGDIVINDVSYSYGYGSNILSDI-----------SLTIKMNSKTTIVGMSGSGKSTLAKLLV 521 (708)
T ss_pred cc------cccccCCCCCCCcEEEEEEEEEcCCCCcceece-----------eEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 00 000000112234688999999996445688999 9999999999999999999999999999
Q ss_pred cccCCCeEEEEeCCCC---CCHHHHHHHhhhcCCCCceehhhH-hhhhcc
Q psy1371 176 GELEFGICVLNLSERG---LTDDRLNHLLSVAPQNSIILLEDI-DAAFVT 221 (244)
Q Consensus 176 ~~~~~~~g~i~~~~~~---~~~~~~~~~~~~~~q~~~lf~dei-d~~~~~ 221 (244)
|++.|+.|.+.++|.+ .+...+|+.+++++|++.+|-+++ |++...
T Consensus 522 gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~ 571 (708)
T TIGR01193 522 GFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLG 571 (708)
T ss_pred ccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhcc
Confidence 9999999999999954 455789999999999999999999 898865
No 11
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.81 E-value=9.1e-21 Score=181.90 Aligned_cols=180 Identities=16% Similarity=0.111 Sum_probs=136.0
Q ss_pred ccchhHHHhhhhHHHHhhhcccccCeeecCCCCCcchhhHhhhhcCCCCccchhhhhhhHHHHHHHHHHHHHHHHHhhcC
Q psy1371 16 FGAGFGLFGLGAGAAILRKGKFRPGRESLPPPNVSMPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKARTLALKQYEG 95 (244)
Q Consensus 16 ~~~~~~~~~~~~g~~~v~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 95 (244)
+..+..++++++|+|++.+|.+|+| .+++|..+...+ ..|+.++...+..++.....+++..+......+.
T Consensus 368 i~~~~~~~il~~g~~lv~~g~ltiG--------~lva~~~l~~~~-~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~ 438 (686)
T TIGR03797 368 LPVLTSAALFAAAISLLGGAGLSLG--------SFLAFNTAFGSF-SGAVTQLSNTLISILAVIPLWERAKPILEALPEV 438 (686)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHH--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 3445667788899999999999999 999999988888 8887777766666555444443333322111000
Q ss_pred ceEEEecCCCceeecCCCCCCCCCCccccChhH-HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHH
Q psy1371 96 KTVMYTALGSEWRPFGHPKRRRPLNSVVLDSGV-ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITAL 174 (244)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~l 174 (244)
. .... ........+.++||+|.|+. .+.+++++ ++.+++|+.++++||||||||||+++|
T Consensus 439 ~-------~~~~-~~~~~~~~I~~~nvsf~Y~~~~~~vL~~i-----------sl~i~~Ge~vaIvG~sGsGKSTLlklL 499 (686)
T TIGR03797 439 D-------EAKT-DPGKLSGAIEVDRVTFRYRPDGPLILDDV-----------SLQIEPGEFVAIVGPSGSGKSTLLRLL 499 (686)
T ss_pred c-------cCcC-CCCCCCceEEEEEEEEEcCCCCccceeee-----------EEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 0 0000 00112235789999999853 35688999 999999999999999999999999999
Q ss_pred hcccCCCeEEEEeCCCC---CCHHHHHHHhhhcCCCCceehhhH-hhhhcccC
Q psy1371 175 AGELEFGICVLNLSERG---LTDDRLNHLLSVAPQNSIILLEDI-DAAFVTRE 223 (244)
Q Consensus 175 a~~~~~~~g~i~~~~~~---~~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r~ 223 (244)
+|++.|+.|.+.++|.+ .+...+|+.+++++|++.+|-+++ |++...+.
T Consensus 500 ~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~ 552 (686)
T TIGR03797 500 LGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP 552 (686)
T ss_pred hCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC
Confidence 99999999999999944 456789999999999999999999 89887654
No 12
>KOG0733|consensus
Probab=99.81 E-value=7.5e-20 Score=166.26 Aligned_cols=130 Identities=21% Similarity=0.312 Sum_probs=112.5
Q ss_pred CCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC----
Q psy1371 114 KRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE---- 189 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~---- 189 (244)
.+..+|+||---...+.++...|.+.+++++.|+.+|+..+.|++|+||||||||.|+|++|++-+.++..|...+
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNk 584 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNK 584 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHH
Confidence 4568899987666667777778888999999999999999999999999999999999999999998877666443
Q ss_pred -CCCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCcCccc-HHHHHHHHHHhhhcC
Q psy1371 190 -RGLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREESSQG-LEDIDAAFVTREESS 243 (244)
Q Consensus 190 -~~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~~~~~-~~~~~~~~l~~~~~~ 243 (244)
.++++..+|..|..+. ++|++|+||+|+++..|+..... ..++.++||..+|..
T Consensus 585 YVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl 642 (802)
T KOG0733|consen 585 YVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGL 642 (802)
T ss_pred HhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhccc
Confidence 6788999999998886 68999999999999999766544 569999999999864
No 13
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.80 E-value=2.3e-20 Score=179.73 Aligned_cols=188 Identities=13% Similarity=0.061 Sum_probs=136.4
Q ss_pred cccchhHHHhhhhHHHHhhhcccccCeeecCCCCCcchhhHhhhhcCCCCccchhhhhhhHHHHHHHHHHHHHHHHHhhc
Q psy1371 15 YFGAGFGLFGLGAGAAILRKGKFRPGRESLPPPNVSMPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKARTLALKQYE 94 (244)
Q Consensus 15 ~~~~~~~~~~~~~g~~~v~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 94 (244)
.+..+..++++++|+|++.+|.+|+| .+++|..+...+ ..|+.++...+..++.....+++..+......+
T Consensus 385 ~i~~~~~~~il~~g~~~v~~g~lt~G--------~lva~~~l~~~~-~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e 455 (710)
T TIGR03796 385 LLTSLNSALILVVGGLRVMEGQLTIG--------MLVAFQSLMSSF-LEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVD 455 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHH--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 34445667788999999999999999 999999998888 889887776666666544444333332211110
Q ss_pred CceEEEecCCCceeecCCCCCCCCCCccccChhH-HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHH
Q psy1371 95 GKTVMYTALGSEWRPFGHPKRRRPLNSVVLDSGV-ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITA 173 (244)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~ 173 (244)
............-.......+.+++++|+|.|+. .+.+++++ ++.+++|+.++++||+|||||||+++
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~i-----------sl~i~~Ge~vaIvG~sGsGKSTLlkl 524 (710)
T TIGR03796 456 PLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENF-----------SLTLQPGQRVALVGGSGSGKSTIAKL 524 (710)
T ss_pred cccccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccce-----------eEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 0000000000000000112345789999999864 34688999 99999999999999999999999999
Q ss_pred HhcccCCCeEEEEeCCCCC---CHHHHHHHhhhcCCCCceehhhH-hhhhccc
Q psy1371 174 LAGELEFGICVLNLSERGL---TDDRLNHLLSVAPQNSIILLEDI-DAAFVTR 222 (244)
Q Consensus 174 la~~~~~~~g~i~~~~~~~---~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r 222 (244)
|+|++.|+.|.+.++|.+. +...+|+.+++++|++.+|-+++ |++...+
T Consensus 525 L~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~ 577 (710)
T TIGR03796 525 VAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWD 577 (710)
T ss_pred HhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCC
Confidence 9999999999999999554 45679999999999999999999 8887654
No 14
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.80 E-value=8.3e-21 Score=182.40 Aligned_cols=182 Identities=14% Similarity=0.101 Sum_probs=136.6
Q ss_pred ccchhHHHhhhhHHHHhhhcccccCeeecCCCCCcchhhHhhhhcCCCCccchhhhhhhHHHHHHHHHHHHHHHHHhhcC
Q psy1371 16 FGAGFGLFGLGAGAAILRKGKFRPGRESLPPPNVSMPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKARTLALKQYEG 95 (244)
Q Consensus 16 ~~~~~~~~~~~~g~~~v~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 95 (244)
+..++.++++++|++++.+|.+|+| ++++|+.+...+ ..|+..+...+..+......+++..+......+.
T Consensus 378 ~~~~~~~~il~~g~~~v~~g~ls~G--------~l~a~~~~~~~~-~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~ 448 (694)
T TIGR03375 378 IQQLVSVAIVVVGVYLISDGELTMG--------GLIACVMLSGRA-LAPLGQLAGLLTRYQQAKTALQSLDELMQLPVER 448 (694)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHH--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 3445667788899999999999999 999999998888 8898877766666655444443333322111100
Q ss_pred ceEEEecCCCceeecCCCCCCCCCCccccChhH-HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHH
Q psy1371 96 KTVMYTALGSEWRPFGHPKRRRPLNSVVLDSGV-ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITAL 174 (244)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~l 174 (244)
. .+..-.......+.++++||+|.|+. .+.+++++ ++.+++|+.++++||||||||||+++|
T Consensus 449 ~------~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i-----------~l~i~~G~~iaIvG~sGsGKSTLlklL 511 (694)
T TIGR03375 449 P------EGTRFLHRPRLQGEIEFRNVSFAYPGQETPALDNV-----------SLTIRPGEKVAIIGRIGSGKSTLLKLL 511 (694)
T ss_pred C------CCCCCCCCCCccceEEEEEEEEEeCCCCccceeee-----------eEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 0 00000000112345889999999864 34588999 999999999999999999999999999
Q ss_pred hcccCCCeEEEEeCCCC---CCHHHHHHHhhhcCCCCceehhhH-hhhhcccC
Q psy1371 175 AGELEFGICVLNLSERG---LTDDRLNHLLSVAPQNSIILLEDI-DAAFVTRE 223 (244)
Q Consensus 175 a~~~~~~~g~i~~~~~~---~~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r~ 223 (244)
+|+++|+.|.+.+++.+ .+...+|+.+++++|++.+|-+++ |++...+.
T Consensus 512 ~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~ 564 (694)
T TIGR03375 512 LGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAP 564 (694)
T ss_pred hcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCC
Confidence 99999999999999954 455789999999999999999999 88887654
No 15
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.79 E-value=9.9e-20 Score=171.28 Aligned_cols=182 Identities=16% Similarity=0.190 Sum_probs=134.6
Q ss_pred cccchhHHHhhhhHHHHhhhcccccCeeecCCCCCcchhhHhhhhcCCCCccchhhhhhhHHHHHHHHHHHHHHHHHhhc
Q psy1371 15 YFGAGFGLFGLGAGAAILRKGKFRPGRESLPPPNVSMPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKARTLALKQYE 94 (244)
Q Consensus 15 ~~~~~~~~~~~~~g~~~v~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 94 (244)
.+..+...+++++|++.+..|.+++| .+++|+.+...+ ..|+..+...+..+.+-....++-.+...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~ri~~~l~---- 310 (567)
T COG1132 244 LLSSLGTVLVLALGGFLVLSGSLTVG--------ALAAFILYLLRL-LTPILQLGEVVSLLQRASAAAERLFELLD---- 310 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHh--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHc----
Confidence 34455667888899999999999999 999999988888 88855555444443331111111111111
Q ss_pred CceEEEecCCCceeecCCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHH
Q psy1371 95 GKTVMYTALGSEWRPFGHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITAL 174 (244)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~l 174 (244)
.+... ...... .......+.|++|+|.|+..+++++++ ++.+++++.++++||+||||||++++|
T Consensus 311 ~~~~~-~~~~~~---~~~~~~~I~f~~vsf~y~~~~~vl~~i-----------s~~i~~Ge~vaiVG~sGsGKSTl~~LL 375 (567)
T COG1132 311 EEPEV-EDPPDP---LKDTIGSIEFENVSFSYPGKKPVLKDI-----------SFSIEPGEKVAIVGPSGSGKSTLIKLL 375 (567)
T ss_pred CCccc-cCCCCC---CCCCCCeEEEEEEEEEcCCCCccccCc-----------eEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 00000 000000 112334588999999998656788999 999999999999999999999999999
Q ss_pred hcccCCCeEEEEeCC---CCCCHHHHHHHhhhcCCCCceehhhH-hhhhcccCc
Q psy1371 175 AGELEFGICVLNLSE---RGLTDDRLNHLLSVAPQNSIILLEDI-DAAFVTREE 224 (244)
Q Consensus 175 a~~~~~~~g~i~~~~---~~~~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r~~ 224 (244)
+++++++.|.|.++| .+.+...+|+.+++++|++.+|-+++ |++...+++
T Consensus 376 ~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~ 429 (567)
T COG1132 376 LRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPD 429 (567)
T ss_pred hccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCC
Confidence 999999999999988 44566889999999999999999999 999988765
No 16
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.79 E-value=7.8e-20 Score=172.41 Aligned_cols=179 Identities=16% Similarity=0.083 Sum_probs=132.5
Q ss_pred cchhHHHhhhhHHHHhhhcccccCeeecCCCCCcchhhHhhhhcCCCCccchhhhhhhHHHHHHHHHHHHHHHHHhhcCc
Q psy1371 17 GAGFGLFGLGAGAAILRKGKFRPGRESLPPPNVSMPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKARTLALKQYEGK 96 (244)
Q Consensus 17 ~~~~~~~~~~~g~~~v~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 96 (244)
..+..++++++|++.+..|.+|+| ++++++.+...+ ..|+..+...+..++.....+++..+......+..
T Consensus 259 ~~~~~~~i~~~g~~~~~~g~is~g--------~~~~~~~~~~~~-~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 329 (582)
T PRK11176 259 ASLALAFVLYAASFPSVMDTLTAG--------TITVVFSSMIAL-MRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKD 329 (582)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHH--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCC
Confidence 334556677889999999999999 888888887777 78877777655555554444443332221110000
Q ss_pred eEEEecCCCceeecCCCCCCCCCCccccChhHH-HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHh
Q psy1371 97 TVMYTALGSEWRPFGHPKRRRPLNSVVLDSGVA-DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALA 175 (244)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la 175 (244)
. .... .......+++++|+|.|+.. ..+++++ ++.+++|+.++|+||||||||||+++|+
T Consensus 330 ~-----~~~~---~~~~~~~i~~~~vsf~y~~~~~~il~~i-----------~l~i~~G~~~aIvG~sGsGKSTLl~ll~ 390 (582)
T PRK11176 330 E-----GKRV---IERAKGDIEFRNVTFTYPGKEVPALRNI-----------NFKIPAGKTVALVGRSGSGKSTIANLLT 390 (582)
T ss_pred C-----CCcC---CCCCCCeEEEEEEEEecCCCCCccccCc-----------eEEeCCCCEEEEECCCCCCHHHHHHHHH
Confidence 0 0000 01122358899999998642 4588999 8999999999999999999999999999
Q ss_pred cccCCCeEEEEeCCCC---CCHHHHHHHhhhcCCCCceehhhH-hhhhcccC
Q psy1371 176 GELEFGICVLNLSERG---LTDDRLNHLLSVAPQNSIILLEDI-DAAFVTRE 223 (244)
Q Consensus 176 ~~~~~~~g~i~~~~~~---~~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r~ 223 (244)
|+++|+.|.+.++|.+ .+...+++.+++++|++.+|-+++ |++...++
T Consensus 391 gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~ 442 (582)
T PRK11176 391 RFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYART 442 (582)
T ss_pred hccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCC
Confidence 9999999999999954 345678999999999999999999 88887653
No 17
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.79 E-value=7.2e-20 Score=176.22 Aligned_cols=181 Identities=13% Similarity=0.101 Sum_probs=133.0
Q ss_pred ccchhHHHhhhhHHHHhhhcccccCeeecCCCCCcchhhHhhhhcCCCCccchhhhhhhHHHHHHHHHHHHHHHHHhhcC
Q psy1371 16 FGAGFGLFGLGAGAAILRKGKFRPGRESLPPPNVSMPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKARTLALKQYEG 95 (244)
Q Consensus 16 ~~~~~~~~~~~~g~~~v~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 95 (244)
+..+..++++.+|++++.+|.+|+| .+++++.+...+ ..|+..+...+..+.+.....++..+..+...+.
T Consensus 394 ~~~~~~~~il~~g~~lv~~g~it~G--------~lva~~~~~~~l-~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~ 464 (711)
T TIGR00958 394 LGMLIQVLVLYYGGQLVLTGKVSSG--------NLVSFLLYQEQL-GEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNI 464 (711)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHH--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 3344566778899999999999999 999998988888 8887776655555544333333322222111110
Q ss_pred ceEEEecCCCceeecCCCCCCCCCCccccChhH--HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHH
Q psy1371 96 KTVMYTALGSEWRPFGHPKRRRPLNSVVLDSGV--ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITA 173 (244)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~ 173 (244)
.. ...-.+ ....+.++++||+|.|+. ...+++++ ++.+++|+.++|+|||||||||++++
T Consensus 465 ~~------~~~~~~-~~~~~~I~~~nVsf~Y~~~~~~~vL~~i-----------sl~i~~Ge~vaIvG~SGsGKSTLl~l 526 (711)
T TIGR00958 465 PL------TGTLAP-LNLEGLIEFQDVSFSYPNRPDVPVLKGL-----------TFTLHPGEVVALVGPSGSGKSTVAAL 526 (711)
T ss_pred CC------CCCCCC-CCCCCeEEEEEEEEECCCCCCCccccCc-----------eEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 00 000000 112335889999999864 24688998 99999999999999999999999999
Q ss_pred HhcccCCCeEEEEeCCCC---CCHHHHHHHhhhcCCCCceehhhH-hhhhcccC
Q psy1371 174 LAGELEFGICVLNLSERG---LTDDRLNHLLSVAPQNSIILLEDI-DAAFVTRE 223 (244)
Q Consensus 174 la~~~~~~~g~i~~~~~~---~~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r~ 223 (244)
|+|+++|+.|.|.++|.+ .+...+++.+++++|++.+|-+++ |++...++
T Consensus 527 L~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~ 580 (711)
T TIGR00958 527 LQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLT 580 (711)
T ss_pred HHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCC
Confidence 999999999999999954 445778999999999999999999 89987654
No 18
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.77 E-value=3e-19 Score=168.70 Aligned_cols=182 Identities=19% Similarity=0.151 Sum_probs=130.0
Q ss_pred ccchhHHHhhhhHHHHhhhcccccCeeecCCCCCcchhhHhhhhcCCCCccchhhhhhhHHHHHHHHHHHHHHHHHhhcC
Q psy1371 16 FGAGFGLFGLGAGAAILRKGKFRPGRESLPPPNVSMPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKARTLALKQYEG 95 (244)
Q Consensus 16 ~~~~~~~~~~~~g~~~v~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 95 (244)
+..+..++++++|+|++.+|.+|+| .+++++.+...+ ..|+..+...+..+.......++..+......+.
T Consensus 249 ~~~~~~~~~~~~g~~~v~~g~lt~g--------~~~a~~~l~~~~-~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~ 319 (588)
T PRK13657 249 ASTITMLAILVLGAALVQKGQLRVG--------EVVAFVGFATLL-IGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDV 319 (588)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcCHH--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 3345566778899999999999999 888888888777 7786666544444433222222211111110000
Q ss_pred ceEEEecCCCceeecCCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHh
Q psy1371 96 KTVMYTALGSEWRPFGHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALA 175 (244)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la 175 (244)
+ ...+.. ........+++++|+|.|+..+.+++++ ++.+++|+.++++||||||||||+++|+
T Consensus 320 ~----~~~~~~--~~~~~~~~I~~~~vsf~y~~~~~iL~~i-----------nl~i~~G~~v~IvG~sGsGKSTLl~lL~ 382 (588)
T PRK13657 320 R----DPPGAI--DLGRVKGAVEFDDVSFSYDNSRQGVEDV-----------SFEAKPGQTVAIVGPTGAGKSTLINLLQ 382 (588)
T ss_pred C----CCCCCC--CcCCCCCeEEEEEEEEEeCCCCceecce-----------eEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 0 000000 0011123588999999986434588999 8999999999999999999999999999
Q ss_pred cccCCCeEEEEeCCC---CCCHHHHHHHhhhcCCCCceehhhH-hhhhcccC
Q psy1371 176 GELEFGICVLNLSER---GLTDDRLNHLLSVAPQNSIILLEDI-DAAFVTRE 223 (244)
Q Consensus 176 ~~~~~~~g~i~~~~~---~~~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r~ 223 (244)
|+++|+.|.+.+++. +.+...+++.+++++|++.+|-+++ |++...++
T Consensus 383 gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~ 434 (588)
T PRK13657 383 RVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRP 434 (588)
T ss_pred cCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCC
Confidence 999999999999994 4456789999999999999999999 88887653
No 19
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.77 E-value=4.4e-19 Score=170.47 Aligned_cols=180 Identities=14% Similarity=0.141 Sum_probs=134.1
Q ss_pred ccchhHHHhhhhHHHHhhhcccccCeeecCCCCCcchhhHhhhhcCCCCccchhhhhhhHHHHHHHHHHHHHHHHHhhcC
Q psy1371 16 FGAGFGLFGLGAGAAILRKGKFRPGRESLPPPNVSMPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKARTLALKQYEG 95 (244)
Q Consensus 16 ~~~~~~~~~~~~g~~~v~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 95 (244)
+..+..++++++|++++.+|.+|+| .+++|..+...+ ..|+..+...+..++.....+++..+......+.
T Consensus 371 i~~~~~~~il~~g~~lv~~g~it~G--------~lia~~~l~~~~-~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~ 441 (694)
T TIGR01846 371 IQKLTFAILLWFGAHLVIGGALSPG--------QLVAFNMLAGRV-TQPVLRLAQLWQDFQQTGIALERLGDILNSPTEP 441 (694)
T ss_pred HHHHHHHHhHHHHHHHHHcCCCCHH--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 3445566788899999999999999 999999988888 8897777765555555444444333322111100
Q ss_pred ceEEEecCCCceeecCCCCCCCCCCccccChhH-HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHH
Q psy1371 96 KTVMYTALGSEWRPFGHPKRRRPLNSVVLDSGV-ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITAL 174 (244)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~l 174 (244)
.. ............+++++|+|.|+. .+.+++++ ++.+++|+.++++||||||||||+++|
T Consensus 442 ~~-------~~~~~~~~~~~~i~~~~vsf~y~~~~~~il~~i-----------~l~i~~G~~vaivG~sGsGKSTL~~ll 503 (694)
T TIGR01846 442 RS-------AGLAALPELRGAITFENIRFRYAPDSPEVLSNL-----------NLDIKPGEFIGIVGPSGSGKSTLTKLL 503 (694)
T ss_pred cC-------CCCCCCCCCCCeEEEEEEEEEcCCCCccccccc-----------eEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 00 000001122345889999999853 34588898 899999999999999999999999999
Q ss_pred hcccCCCeEEEEeCCCC---CCHHHHHHHhhhcCCCCceehhhH-hhhhccc
Q psy1371 175 AGELEFGICVLNLSERG---LTDDRLNHLLSVAPQNSIILLEDI-DAAFVTR 222 (244)
Q Consensus 175 a~~~~~~~g~i~~~~~~---~~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r 222 (244)
+|++.|+.|.+.+++.+ .+...+|+.+++++|++.+|-+++ |++...+
T Consensus 504 ~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~ 555 (694)
T TIGR01846 504 QRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCN 555 (694)
T ss_pred hcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCC
Confidence 99999999999999954 455788999999999999999999 8887654
No 20
>KOG0057|consensus
Probab=99.76 E-value=3.3e-19 Score=160.78 Aligned_cols=171 Identities=18% Similarity=0.198 Sum_probs=124.4
Q ss_pred hhhHHHHhhhcccccCeeecCCCCCcchhhHhhhhcCCCCccchhhhhhhHHHHHHHHHHHHHHHH-HhhcCceEEEecC
Q psy1371 25 LGAGAAILRKGKFRPGRESLPPPNVSMPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKARTLAL-KQYEGKTVMYTAL 103 (244)
Q Consensus 25 ~~~g~~~v~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~ 103 (244)
+..|..-+..|.+|+| .++....+..++ ..|+..++..+..+.. -|-+..+... ...+.....
T Consensus 277 m~l~~~gi~~~~mtvg--------dlv~~n~l~~qL-~~~l~~Lg~vyr~~~q---~l~Dm~~~~~l~~~~~~i~~---- 340 (591)
T KOG0057|consen 277 MVLGSNGIAAGKMTVG--------DLVMVNSLLFQL-SLPLNFLGSVYRELRQ---ALTDMRTLFILLEVDEDIQE---- 340 (591)
T ss_pred HHHHhhhhhhcccccc--------chhhHHHHHHHH-HhHHHHHHHHHHHHHH---HHHhHHHHHhhhhhhhhhhh----
Confidence 3345555788999999 888888888888 8886666543333222 1111111100 000000000
Q ss_pred CCceeecCCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeE
Q psy1371 104 GSEWRPFGHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGIC 183 (244)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g 183 (244)
.-.+...+...+.|+||.|.|+.+.++++.+ ++.+|.|+.++|+|+|||||||++|+|.+++. +.|
T Consensus 341 --~~~~i~~~~~~I~F~dV~f~y~~k~~iL~gv-----------sf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG 406 (591)
T KOG0057|consen 341 --AALPIELFGGSIEFDDVHFSYGPKRKVLKGV-----------SFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSG 406 (591)
T ss_pred --ccCCcccCCCcEEEEeeEEEeCCCCceecce-----------eEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCC
Confidence 0001123345589999999999888899999 99999999999999999999999999999999 999
Q ss_pred EEEeCCCCC---CHHHHHHHhhhcCCCCceehhhH-hhhhcccCcC
Q psy1371 184 VLNLSERGL---TDDRLNHLLSVAPQNSIILLEDI-DAAFVTREES 225 (244)
Q Consensus 184 ~i~~~~~~~---~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r~~~ 225 (244)
+|.++|.++ +...+|+.++++||++.||-|+| .++.+++...
T Consensus 407 ~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sa 452 (591)
T KOG0057|consen 407 SILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSA 452 (591)
T ss_pred cEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCc
Confidence 999999554 55789999999999999999999 8888876544
No 21
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.76 E-value=3.5e-19 Score=167.58 Aligned_cols=178 Identities=16% Similarity=0.083 Sum_probs=133.7
Q ss_pred cchhHHHhhhhHHHHhhhcccccCeeecCCCCCcchhhHhhhhcCCCCccchhhhhhhHHHHHHHHHHHHHHHHHhhcCc
Q psy1371 17 GAGFGLFGLGAGAAILRKGKFRPGRESLPPPNVSMPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKARTLALKQYEGK 96 (244)
Q Consensus 17 ~~~~~~~~~~~g~~~v~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 96 (244)
..+..++++++|++++.+|.+|+| .++++..+...+ .+|+..+...+..+.......++..+......+..
T Consensus 248 ~~~~~~~~~~~g~~~~~~g~lt~g--------~l~a~~~~~~~~-~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 318 (571)
T TIGR02203 248 ASLALAVVLFIALFQAQAGSLTAG--------DFTAFITAMIAL-IRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKD 318 (571)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHh--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 344566788899999999999999 999999988888 89977777666555554444433333221111000
Q ss_pred eEEEecCCCceeecCCCCCCCCCCccccChhH-HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHh
Q psy1371 97 TVMYTALGSEWRPFGHPKRRRPLNSVVLDSGV-ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALA 175 (244)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la 175 (244)
. .... .......+++++|.|.|+. .+.+++++ ++.+++|+.++++||||+|||||+++|+
T Consensus 319 ~-----~~~~---~~~~~~~i~~~~v~f~y~~~~~~il~~i-----------nl~i~~G~~v~IvG~sGsGKSTLl~lL~ 379 (571)
T TIGR02203 319 T-----GTRA---IERARGDVEFRNVTFRYPGRDRPALDSI-----------SLVIEPGETVALVGRSGSGKSTLVNLIP 379 (571)
T ss_pred C-----CCCC---CCCCCCeEEEEEEEEEcCCCCCccccCe-----------eEEecCCCEEEEECCCCCCHHHHHHHHH
Confidence 0 0000 0112235789999999854 34578888 8899999999999999999999999999
Q ss_pred cccCCCeEEEEeCCCC---CCHHHHHHHhhhcCCCCceehhhH-hhhhccc
Q psy1371 176 GELEFGICVLNLSERG---LTDDRLNHLLSVAPQNSIILLEDI-DAAFVTR 222 (244)
Q Consensus 176 ~~~~~~~g~i~~~~~~---~~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r 222 (244)
|+++|+.|.+.+++.+ .+.+.+++.+++++|++.+|-+++ |++...+
T Consensus 380 gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~ 430 (571)
T TIGR02203 380 RFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGR 430 (571)
T ss_pred hccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCC
Confidence 9999999999999944 455778999999999999999999 8888664
No 22
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.76 E-value=3.6e-19 Score=166.12 Aligned_cols=176 Identities=14% Similarity=0.113 Sum_probs=127.6
Q ss_pred hHHHhhhhHHHHhhhcccccCeeecCCCCCcchhhHhhhhcCCCCccchhhhhhhHHHHHHHHHHHHHHHHHhhcCceEE
Q psy1371 20 FGLFGLGAGAAILRKGKFRPGRESLPPPNVSMPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKARTLALKQYEGKTVM 99 (244)
Q Consensus 20 ~~~~~~~~g~~~v~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 99 (244)
..++++.+|++.+.+|.+|+| .+++++.+...+ ..|+..+...+..+.+....+++..+..... +...
T Consensus 241 ~~~~~~~~~~~~~~~g~~t~g--------~~~~~~~~~~~~-~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~-~~~~-- 308 (529)
T TIGR02857 241 SVALVAVYIGFRLLAGDLDLA--------TGLFVLLLAPEF-YLPLRQLGADYHARADGVAAAEALFAVLDAP-RPLA-- 308 (529)
T ss_pred HHHHHHHHHHHHHHcCCCCHH--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cccC--
Confidence 334445678888889999999 888888888777 8887776655555555333333332222110 0000
Q ss_pred EecCCCceeecCCCCCCCCCCccccChhHH-HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhccc
Q psy1371 100 YTALGSEWRPFGHPKRRRPLNSVVLDSGVA-DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
. ... .. ....+.+.+++|.|.|+.. +.+++++ ++.+++|+.++++||+|||||||+++|+|++
T Consensus 309 --~-~~~-~~-~~~~~~i~~~~v~f~y~~~~~~il~~i-----------~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 372 (529)
T TIGR02857 309 --G-KAP-VT-AAPAPSLEFSGLSVAYPGRRAPALRPV-----------SFTVPPGERVALVGPSGAGKSTLLNLLLGFV 372 (529)
T ss_pred --C-CcC-CC-CCCCCeEEEEEEEEECCCCCcccccce-----------eEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 0 000 00 0112358899999998653 3688999 8999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCC---CCHHHHHHHhhhcCCCCceehhhH-hhhhcccC
Q psy1371 179 EFGICVLNLSERG---LTDDRLNHLLSVAPQNSIILLEDI-DAAFVTRE 223 (244)
Q Consensus 179 ~~~~g~i~~~~~~---~~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r~ 223 (244)
+|+.|.+.+++.+ .+.+.+|+.+++++|++.+|-+++ |++...+.
T Consensus 373 ~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~ 421 (529)
T TIGR02857 373 DPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARP 421 (529)
T ss_pred CCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCC
Confidence 9999999999954 455788999999999999999999 88876543
No 23
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.75 E-value=8e-19 Score=164.39 Aligned_cols=176 Identities=16% Similarity=0.189 Sum_probs=129.5
Q ss_pred chhHHHhhhhHHHHhhhcccccCeeecCCCCCcchhhHhhhhcCCCCccchhhhhhhHHHHHHHHHHHHHHHHHhhcCce
Q psy1371 18 AGFGLFGLGAGAAILRKGKFRPGRESLPPPNVSMPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKARTLALKQYEGKT 97 (244)
Q Consensus 18 ~~~~~~~~~~g~~~v~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 97 (244)
.+..++++++|++++.+|.+|+| .+++++.+...+ ..|+..+......+.......++..+......+..
T Consensus 236 ~~~~~~~~~~g~~l~~~g~it~g--------~l~a~~~~~~~~-~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~- 305 (544)
T TIGR01842 236 IVLQSLVLGLGAYLAIDGEITPG--------MMIAGSILVGRA-LAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRD- 305 (544)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHH--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc-
Confidence 34556778899999999999999 999998888888 88877777655555553333333222221110000
Q ss_pred EEEecCCCceeecCCCCCCCCCCccccChhH-HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhc
Q psy1371 98 VMYTALGSEWRPFGHPKRRRPLNSVVLDSGV-ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAG 176 (244)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~ 176 (244)
.... .......+.+++++|.|+. .+.+++++ ++.+++|+.++++||||||||||+++|+|
T Consensus 306 -----~~~~---~~~~~~~i~~~~v~~~y~~~~~~~l~~~-----------~~~i~~G~~~~ivG~sGsGKSTL~~ll~g 366 (544)
T TIGR01842 306 -----PAMP---LPEPEGHLSVENVTIVPPGGKKPTLRGI-----------SFRLQAGEALAIIGPSGSGKSTLARLIVG 366 (544)
T ss_pred -----CCCC---CCCCCCeEEEEEEEEEcCCCCccccccc-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 0000 0112235789999999854 24678888 89999999999999999999999999999
Q ss_pred ccCCCeEEEEeCCCCC---CHHHHHHHhhhcCCCCceehhhH-hhhhccc
Q psy1371 177 ELEFGICVLNLSERGL---TDDRLNHLLSVAPQNSIILLEDI-DAAFVTR 222 (244)
Q Consensus 177 ~~~~~~g~i~~~~~~~---~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r 222 (244)
+++|+.|.+.+++.+. +...+++.+++++|++.+|-+++ |++...+
T Consensus 367 ~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~ 416 (544)
T TIGR01842 367 IWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFG 416 (544)
T ss_pred CCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccC
Confidence 9999999999998543 44678899999999999998888 7886443
No 24
>KOG0738|consensus
Probab=99.75 E-value=4.7e-18 Score=147.74 Aligned_cols=130 Identities=19% Similarity=0.274 Sum_probs=111.4
Q ss_pred CCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC----
Q psy1371 114 KRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE---- 189 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~---- 189 (244)
.+.++|+||....+.++.+.+.|...+.-|++|..+- .+-+|++++||||||||.|+|++|.+++.++..|+.+.
T Consensus 206 np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gir-rPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSK 284 (491)
T KOG0738|consen 206 NPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIR-RPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSK 284 (491)
T ss_pred CCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcc-cccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhh
Confidence 3458899999888888888888999999999995554 55599999999999999999999999998888887654
Q ss_pred -CCCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCcCccc--HHHHHHHHHHhhhcCC
Q psy1371 190 -RGLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREESSQG--LEDIDAAFVTREESSQ 244 (244)
Q Consensus 190 -~~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~~~~~--~~~~~~~~l~~~~~~~ 244 (244)
.+++++-+|-+|.++. .++.+|+||||+++..|+.++++ .+++.++||-++|..|
T Consensus 285 wRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~ 344 (491)
T KOG0738|consen 285 WRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQ 344 (491)
T ss_pred hccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccc
Confidence 6788888999998886 78999999999999999877654 4699999999998654
No 25
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.75 E-value=9.6e-19 Score=164.64 Aligned_cols=178 Identities=16% Similarity=0.239 Sum_probs=128.4
Q ss_pred chhHHHhhhhHHHHhhhcccccCeeecCCCCCcchhhHhhhhcCCCCccchhhhhhhHHHHHHHHHHHHHHHHHhhcCce
Q psy1371 18 AGFGLFGLGAGAAILRKGKFRPGRESLPPPNVSMPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKARTLALKQYEGKT 97 (244)
Q Consensus 18 ~~~~~~~~~~g~~~v~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 97 (244)
.+..++++++|+|++.+|.+|+| .+++++.+...+ ..|+..+...+..+.+.....++..+......+..
T Consensus 232 ~~~~~~~l~~g~~lv~~g~lt~g--------~l~a~~~~~~~~-~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~- 301 (569)
T PRK10789 232 GMANLLAIGGGSWMVVNGSLTLG--------QLTSFVMYLGLM-IWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVK- 301 (569)
T ss_pred HHHHHHHHHHHHHHHHcCCcCHH--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc-
Confidence 34556778899999999999999 999999988888 88877666544444443322222222111100000
Q ss_pred EEEecCCCceeecCCCCCCCCCCccccChhH-HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhc
Q psy1371 98 VMYTALGSEWRPFGHPKRRRPLNSVVLDSGV-ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAG 176 (244)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~ 176 (244)
.+. .........+.++++.|.|+. .+.+++++ ++.+++|+.++++||||||||||+++|+|
T Consensus 302 -----~~~--~~~~~~~~~I~~~~v~~~y~~~~~~~l~~i-----------~~~i~~G~~~~ivG~sGsGKSTLl~ll~g 363 (569)
T PRK10789 302 -----DGS--EPVPEGRGELDVNIRQFTYPQTDHPALENV-----------NFTLKPGQMLGICGPTGSGKSTLLSLIQR 363 (569)
T ss_pred -----CCC--CCCCCCCCcEEEEEEEEECCCCCCccccCe-----------eEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 000 000111234778999998853 24578888 88899999999999999999999999999
Q ss_pred ccCCCeEEEEeCCCCC---CHHHHHHHhhhcCCCCceehhhH-hhhhcccC
Q psy1371 177 ELEFGICVLNLSERGL---TDDRLNHLLSVAPQNSIILLEDI-DAAFVTRE 223 (244)
Q Consensus 177 ~~~~~~g~i~~~~~~~---~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r~ 223 (244)
+++|+.|.+.+++.+. +...+++.+++++|++.+|-+++ |++...+.
T Consensus 364 ~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~ 414 (569)
T PRK10789 364 HFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRP 414 (569)
T ss_pred ccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCC
Confidence 9999999999998543 45678899999999999998898 88876543
No 26
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.75 E-value=7.4e-19 Score=166.14 Aligned_cols=167 Identities=17% Similarity=0.186 Sum_probs=122.2
Q ss_pred hhHHHHhhhcccccCeeecCCCCCcchhhHhhhhcCCCCccchhhhhhhHHHHHHHHHHHHHHHHHhhcCceEEEecCCC
Q psy1371 26 GAGAAILRKGKFRPGRESLPPPNVSMPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKARTLALKQYEGKTVMYTALGS 105 (244)
Q Consensus 26 ~~g~~~v~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 105 (244)
+++++ +..|.+++| .+++++.+...+ ..|+..+...+..+.+.....++..+......+. ....
T Consensus 269 ~~~~~-~~~g~is~g--------~l~a~~~~~~~~-~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~------~~~~ 332 (592)
T PRK10790 269 MLFGF-SASGTIEVG--------VLYAFISYLGRL-NEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQ------YGND 332 (592)
T ss_pred HHHHH-HHCCCcCHH--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc------CCCC
Confidence 34444 679999999 999998888888 8887777755554444333322222211110000 0000
Q ss_pred ceeecCCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEE
Q psy1371 106 EWRPFGHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVL 185 (244)
Q Consensus 106 ~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i 185 (244)
. .......+.+++|.|.|+..+.+++++ ++.+++|+.++++||||||||||+++|+|++.|+.|.+
T Consensus 333 ~---~~~~~~~i~~~~v~f~y~~~~~il~~i-----------~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I 398 (592)
T PRK10790 333 D---RPLQSGRIDIDNVSFAYRDDNLVLQNI-----------NLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEI 398 (592)
T ss_pred c---cCCCCCeEEEEEEEEEeCCCCceeece-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE
Confidence 0 011123588999999986434588888 99999999999999999999999999999999999999
Q ss_pred EeCCCCC---CHHHHHHHhhhcCCCCceehhhH-hhhhccc
Q psy1371 186 NLSERGL---TDDRLNHLLSVAPQNSIILLEDI-DAAFVTR 222 (244)
Q Consensus 186 ~~~~~~~---~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r 222 (244)
.+++.+. +.+.+++.+++++|++.+|-+++ |++...+
T Consensus 399 ~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~ 439 (592)
T PRK10790 399 RLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR 439 (592)
T ss_pred EECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC
Confidence 9999544 45789999999999999999999 8888765
No 27
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.74 E-value=1.2e-18 Score=164.47 Aligned_cols=181 Identities=14% Similarity=0.146 Sum_probs=129.2
Q ss_pred cchhHHHhhhhHHHHhhhcccccCeeecCCCCCcchhhHhhhhcCCCCccchhhhhhhHHHHHHHHHHHHHHHHHhhcCc
Q psy1371 17 GAGFGLFGLGAGAAILRKGKFRPGRESLPPPNVSMPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKARTLALKQYEGK 96 (244)
Q Consensus 17 ~~~~~~~~~~~g~~~v~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 96 (244)
..+..++++++|++++.+|.+|+| .+++++.+...+ ..|+..+...+..+......+++..+.........
T Consensus 250 ~~~~~~~v~~~g~~~v~~g~it~g--------~l~a~~~~~~~l-~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 320 (585)
T TIGR01192 250 STISMMCILVIGTVLVIKGELSVG--------EVIAFIGFANLL-IGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQRE 320 (585)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHH--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 344566778899999999999999 999998888887 88866666555444443333222222111100000
Q ss_pred eEEEecCCCceeecCCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhc
Q psy1371 97 TVMYTALGSEWRPFGHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAG 176 (244)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~ 176 (244)
...+. .......+.+.+++|.|.|+..+.+++++ ++.+++|+.++|+||||+|||||+++|+|
T Consensus 321 ----~~~~~--~~~~~~~~~i~~~~v~~~y~~~~~~l~~i-----------~~~i~~G~~~~ivG~sGsGKSTL~~ll~g 383 (585)
T TIGR01192 321 ----EPADA--PELPNVKGAVEFRHITFEFANSSQGVFDV-----------SFEAKAGQTVAIVGPTGAGKTTLINLLQR 383 (585)
T ss_pred ----CCccC--CCCCCCCCeEEEEEEEEECCCCCccccce-----------eEEEcCCCEEEEECCCCCCHHHHHHHHcc
Confidence 00000 00111223478899999986434578888 88999999999999999999999999999
Q ss_pred ccCCCeEEEEeCCCCC---CHHHHHHHhhhcCCCCceehhhH-hhhhcccC
Q psy1371 177 ELEFGICVLNLSERGL---TDDRLNHLLSVAPQNSIILLEDI-DAAFVTRE 223 (244)
Q Consensus 177 ~~~~~~g~i~~~~~~~---~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r~ 223 (244)
+++|+.|.+.+++.+. +...+++.+++++|++.+|-+++ |++...+.
T Consensus 384 ~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~ 434 (585)
T TIGR01192 384 VYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGRE 434 (585)
T ss_pred CCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCC
Confidence 9999999999998543 45678899999999999998888 88876543
No 28
>KOG0734|consensus
Probab=99.74 E-value=8.7e-18 Score=150.98 Aligned_cols=126 Identities=27% Similarity=0.385 Sum_probs=106.8
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC-----C
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE-----R 190 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~-----~ 190 (244)
...|+||..-++.+.. +++|..++++|+.|.++|-..++|++|+||||||||.|+|++||+-+.++.....++ .
T Consensus 300 nv~F~dVkG~DEAK~E-LeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~V 378 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQE-LEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFV 378 (752)
T ss_pred ccccccccChHHHHHH-HHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhh
Confidence 4678888877776655 589999999999999999999999999999999999999999999999988776655 4
Q ss_pred CCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCcCccc-HHHHHHHHHHhhhc
Q psy1371 191 GLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREESSQG-LEDIDAAFVTREES 242 (244)
Q Consensus 191 ~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~~~~~-~~~~~~~~l~~~~~ 242 (244)
+...+++|.+|..+. .||++|+||||++..+|.....+ .++-.+++|..+|.
T Consensus 379 GvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDG 433 (752)
T KOG0734|consen 379 GVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDG 433 (752)
T ss_pred cccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcC
Confidence 556788999998876 58999999999999999766553 45777888877763
No 29
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.74 E-value=1.6e-18 Score=163.22 Aligned_cols=180 Identities=17% Similarity=0.167 Sum_probs=121.0
Q ss_pred cchhHHHhhhhHHHHhhhcccccCeeecCCCCCcchhhHhhhhcCCCCccchhhhhhhHHHHHHHHHHHHHHHHHhhcCc
Q psy1371 17 GAGFGLFGLGAGAAILRKGKFRPGRESLPPPNVSMPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKARTLALKQYEGK 96 (244)
Q Consensus 17 ~~~~~~~~~~~g~~~v~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 96 (244)
..+..++++++|+++ ..|.+++| .+++|+.+.......|+..+...+..+++.....++..+......+..
T Consensus 255 ~~~~~~~i~~~g~~~-~~g~~t~g--------~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~ 325 (574)
T PRK11160 255 NGLTVVLMLWLAAGG-VGGNAQPG--------ALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVT 325 (574)
T ss_pred HHHHHHHHHHHHHHH-hccccchh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 344555677889988 48999999 888877665443133543333323333322222221111111100000
Q ss_pred eEEEecCCCceeecCCCCCCCCCCccccChhHH-HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHh
Q psy1371 97 TVMYTALGSEWRPFGHPKRRRPLNSVVLDSGVA-DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALA 175 (244)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la 175 (244)
. ..... .......+.+++|+|.|+.. +.+++++ ++.+++|+.++|+||||||||||+++|+
T Consensus 326 ~----~~~~~---~~~~~~~i~~~~v~f~y~~~~~~il~~i-----------~~~i~~G~~~aivG~sGsGKSTL~~ll~ 387 (574)
T PRK11160 326 F----PTTST---AAADQVSLTLNNVSFTYPDQPQPVLKGL-----------SLQIKAGEKVALLGRTGCGKSTLLQLLT 387 (574)
T ss_pred C----CcccC---CCCCCCeEEEEEEEEECCCCCCcceecc-----------eEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 0 00000 01123458899999998642 4588999 9999999999999999999999999999
Q ss_pred cccCCCeEEEEeCCCC---CCHHHHHHHhhhcCCCCceehhhH-hhhhcccC
Q psy1371 176 GELEFGICVLNLSERG---LTDDRLNHLLSVAPQNSIILLEDI-DAAFVTRE 223 (244)
Q Consensus 176 ~~~~~~~g~i~~~~~~---~~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r~ 223 (244)
|+++|+.|.+.+++.+ .+...+|+.+++++|++.+|-+++ |++...++
T Consensus 388 g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~ 439 (574)
T PRK11160 388 RAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAP 439 (574)
T ss_pred cCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCC
Confidence 9999999999999954 455778999999999999999999 88876553
No 30
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.73 E-value=2.6e-18 Score=161.86 Aligned_cols=180 Identities=16% Similarity=0.099 Sum_probs=128.5
Q ss_pred hhHHHhhhhHHHHhhhcccccCeeecCCCCCcchhhHhhhhcCCCCccchhhhhhhHHHHHHHHHHHHHHHHHhhcCceE
Q psy1371 19 GFGLFGLGAGAAILRKGKFRPGRESLPPPNVSMPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKARTLALKQYEGKTV 98 (244)
Q Consensus 19 ~~~~~~~~~g~~~v~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 98 (244)
...++++++|++++.+|.+|+| .+++++.+...+ ..|+..+...+..+......+++..+......+...
T Consensus 254 ~~~~~~~~~g~~~v~~g~lt~g--------~~~~~~~~~~~~-~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~- 323 (576)
T TIGR02204 254 GAIVGVLWVGAHDVIAGKMSAG--------TLGQFVFYAVMV-AGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKA- 323 (576)
T ss_pred HHHHHHHHHHHHHHHcCCCCHH--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCC-
Confidence 3445667789999999999999 888888888777 778776665555544433333332222111000000
Q ss_pred EEecCCCceeecCCCCCCCCCCccccChhHH--HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhc
Q psy1371 99 MYTALGSEWRPFGHPKRRRPLNSVVLDSGVA--DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAG 176 (244)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~ 176 (244)
......+. ......+++++|.|.|+.. +.+++++ ++.+++|+.++++||||||||||+++|+|
T Consensus 324 --~~~~~~~~--~~~~~~i~~~~v~f~y~~~~~~~iL~~i-----------nl~i~~Ge~i~IvG~sGsGKSTLlklL~g 388 (576)
T TIGR02204 324 --PAHPKTLP--VPLRGEIEFEQVNFAYPARPDQPALDGL-----------NLTVRPGETVALVGPSGAGKSTLFQLLLR 388 (576)
T ss_pred --CCCCccCC--cCCCceEEEEEEEEECCCCCCCccccce-----------eEEecCCCEEEEECCCCCCHHHHHHHHHh
Confidence 00000000 0112347899999998542 3578888 89999999999999999999999999999
Q ss_pred ccCCCeEEEEeCCCC---CCHHHHHHHhhhcCCCCceehhhH-hhhhcccC
Q psy1371 177 ELEFGICVLNLSERG---LTDDRLNHLLSVAPQNSIILLEDI-DAAFVTRE 223 (244)
Q Consensus 177 ~~~~~~g~i~~~~~~---~~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r~ 223 (244)
++.|..|.+.+++.+ .+...+++.+++++|++.+|-+++ |++...++
T Consensus 389 l~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~ 439 (576)
T TIGR02204 389 FYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRP 439 (576)
T ss_pred ccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCC
Confidence 999999999999854 345678899999999999999999 88887553
No 31
>KOG0727|consensus
Probab=99.73 E-value=1.2e-17 Score=138.32 Aligned_cols=129 Identities=24% Similarity=0.329 Sum_probs=102.3
Q ss_pred CCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC----
Q psy1371 114 KRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE---- 189 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~---- 189 (244)
++.++..|+..-.-.++.+.+.+...+.+.++|++.|+.+++|+++|||||||||.|++++|......+..+..++
T Consensus 149 kpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqk 228 (408)
T KOG0727|consen 149 KPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK 228 (408)
T ss_pred CCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHH
Confidence 4556677776555567778889999999999999999999999999999999999999999998776655544433
Q ss_pred -CCCCHHHHHHHhhhcCC--CCceehhhHhhhhcccCcCccc----HHHHHHHHHHhhhc
Q psy1371 190 -RGLTDDRLNHLLSVAPQ--NSIILLEDIDAAFVTREESSQG----LEDIDAAFVTREES 242 (244)
Q Consensus 190 -~~~~~~~~~~~~~~~~q--~~~lf~deid~~~~~r~~~~~~----~~~~~~~~l~~~~~ 242 (244)
.++...-+|..|..+.+ ++++|+||+|+++.+|-+...+ ..++.-++|.++|.
T Consensus 229 ylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdg 288 (408)
T KOG0727|consen 229 YLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDG 288 (408)
T ss_pred HhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccC
Confidence 34455567888888875 6899999999999998665443 55777778887763
No 32
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.73 E-value=2.4e-18 Score=175.54 Aligned_cols=187 Identities=13% Similarity=0.055 Sum_probs=121.9
Q ss_pred ccchhHHHhhhhHHHHhhhcccccCeeecCCCCCcchhhHhhhhcCCCCccchhhhhhhHHHHHHHHHHHHHHHHHhhcC
Q psy1371 16 FGAGFGLFGLGAGAAILRKGKFRPGRESLPPPNVSMPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKARTLALKQYEG 95 (244)
Q Consensus 16 ~~~~~~~~~~~~g~~~v~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 95 (244)
+..++.++++++|++++.+|.+|+| .+++++.++... ..+...+...+..+++.....++..+......
T Consensus 1076 ~~~~~~~~~~~~G~~lv~~g~it~g--------~l~~~~~~~~~~-~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~-- 1144 (1466)
T PTZ00265 1076 AQLFINSFAYWFGSFLIRRGTILVD--------DFMKSLFTFLFT-GSYAGKLMSLKGDSENAKLSFEKYYPLIIRKS-- 1144 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHH--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--
Confidence 3444567888999999999999999 777665443222 22322222222222221111111111111000
Q ss_pred ceEEEecCCCceeecCCCCCCCCCCccccChhH--HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHH
Q psy1371 96 KTVMYTALGSEWRPFGHPKRRRPLNSVVLDSGV--ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITA 173 (244)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~ 173 (244)
........+..........+.+.|++|.|.|+. ..++++++ ++.+++|+.++|+|||||||||++++
T Consensus 1145 ~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~l-----------sl~i~~G~~vAIVG~SGsGKSTl~~L 1213 (1466)
T PTZ00265 1145 NIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDL-----------TFSCDSKKTTAIVGETGSGKSTVMSL 1213 (1466)
T ss_pred cCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCe-----------eEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 000000000000000112346889999999963 23688999 99999999999999999999999999
Q ss_pred HhcccCC------------------------------------------------------CeEEEEeCCCCC---CHHH
Q psy1371 174 LAGELEF------------------------------------------------------GICVLNLSERGL---TDDR 196 (244)
Q Consensus 174 la~~~~~------------------------------------------------------~~g~i~~~~~~~---~~~~ 196 (244)
|+|+|.| +.|.|.++|.++ +.+.
T Consensus 1214 L~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~ 1293 (1466)
T PTZ00265 1214 LMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKD 1293 (1466)
T ss_pred HHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHH
Confidence 9999998 589999999544 5678
Q ss_pred HHHHhhhcCCCCceehhhH-hhhhcccCc
Q psy1371 197 LNHLLSVAPQNSIILLEDI-DAAFVTREE 224 (244)
Q Consensus 197 ~~~~~~~~~q~~~lf~dei-d~~~~~r~~ 224 (244)
+|+.+++|+|++.||-++| |++...+++
T Consensus 1294 lR~~i~~V~Qep~LF~gTIreNI~~g~~~ 1322 (1466)
T PTZ00265 1294 LRNLFSIVSQEPMLFNMSIYENIKFGKED 1322 (1466)
T ss_pred HHhhccEeCCCCccccccHHHHHhcCCCC
Confidence 9999999999999999999 999887653
No 33
>KOG0731|consensus
Probab=99.72 E-value=2.5e-17 Score=154.97 Aligned_cols=128 Identities=25% Similarity=0.406 Sum_probs=110.6
Q ss_pred CCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC----
Q psy1371 114 KRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE---- 189 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~---- 189 (244)
...+.|+||..-++.++.+ .++..++++|+.|.++|...++|++|+||||||||.|+|++||+-+.++..++.++
T Consensus 305 ~t~V~FkDVAG~deAK~El-~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEEL-MEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred CCCCccccccCcHHHHHHH-HHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 3458899999888877664 78889999999999999999999999999999999999999999999998888766
Q ss_pred -CCCCHHHHHHHhhhcCC--CCceehhhHhhhhcccC-----cCcccHHHHHHHHHHhhhc
Q psy1371 190 -RGLTDDRLNHLLSVAPQ--NSIILLEDIDAAFVTRE-----ESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 190 -~~~~~~~~~~~~~~~~q--~~~lf~deid~~~~~r~-----~~~~~~~~~~~~~l~~~~~ 242 (244)
.+....++|.+|..+.. ||++|+||||+++..|. ...++.++-.+++|.++|-
T Consensus 384 ~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDg 444 (774)
T KOG0731|consen 384 FVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDG 444 (774)
T ss_pred hcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcC
Confidence 44556789999988874 79999999999999884 3456678889999998873
No 34
>KOG0739|consensus
Probab=99.71 E-value=2.4e-17 Score=139.20 Aligned_cols=127 Identities=26% Similarity=0.389 Sum_probs=109.9
Q ss_pred CCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC----
Q psy1371 114 KRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE---- 189 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~---- 189 (244)
++.+.|+||..-++.++.+.+.+...++.|++| .-+-.+-+|++|+||||+|||.|++++|.+-+.++.+++-++
T Consensus 127 KPNVkWsDVAGLE~AKeALKEAVILPIKFPqlF-tGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSK 205 (439)
T KOG0739|consen 127 KPNVKWSDVAGLEGAKEALKEAVILPIKFPQLF-TGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 205 (439)
T ss_pred CCCCchhhhccchhHHHHHHhheeecccchhhh-cCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHH
Confidence 567899999999999999999999999999999 555566699999999999999999999999998888888766
Q ss_pred -CCCCHHHHHHHhhhcCC--CCceehhhHhhhhcccCcC-cccHHHHHHHHHHhhh
Q psy1371 190 -RGLTDDRLNHLLSVAPQ--NSIILLEDIDAAFVTREES-SQGLEDIDAAFVTREE 241 (244)
Q Consensus 190 -~~~~~~~~~~~~~~~~q--~~~lf~deid~~~~~r~~~-~~~~~~~~~~~l~~~~ 241 (244)
.+++++.++.+|.++++ ++++|+||||+++..|... ++..+++..+||-++.
T Consensus 206 WmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMq 261 (439)
T KOG0739|consen 206 WMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQ 261 (439)
T ss_pred HhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhh
Confidence 57888899999999985 7999999999999888654 3456789999988764
No 35
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.71 E-value=1.2e-17 Score=157.87 Aligned_cols=96 Identities=21% Similarity=0.233 Sum_probs=83.7
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCC---CC
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSER---GL 192 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~---~~ 192 (244)
.+.++||+|.+...+.+++++ ++.+++|+.++|+||||||||||+++|+|++ |+.|.+.+++. +.
T Consensus 349 ~i~~~~vsf~~~~~~~vL~~i-----------~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~ 416 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAGPL-----------NFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELREL 416 (588)
T ss_pred eEEEEeeEEeccCCCeeeeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccC
Confidence 478999986543334678888 9999999999999999999999999999999 89999999994 45
Q ss_pred CHHHHHHHhhhcCCCCceehhhH-hhhhcccC
Q psy1371 193 TDDRLNHLLSVAPQNSIILLEDI-DAAFVTRE 223 (244)
Q Consensus 193 ~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r~ 223 (244)
+.+.+|+.+++++|++.+|-++| |++...++
T Consensus 417 ~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~ 448 (588)
T PRK11174 417 DPESWRKHLSWVGQNPQLPHGTLRDNVLLGNP 448 (588)
T ss_pred CHHHHHhheEEecCCCcCCCcCHHHHhhcCCC
Confidence 56789999999999999999999 99988754
No 36
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=9.9e-18 Score=147.24 Aligned_cols=176 Identities=16% Similarity=0.177 Sum_probs=130.7
Q ss_pred HHhhhhHHHHhhhcccccCeeecCCCCCcchhhHhhhhcCCCCccchhhhhhhHHH----HHHHHHHHHHHHHHhhcCce
Q psy1371 22 LFGLGAGAAILRKGKFRPGRESLPPPNVSMPFMELIDSLSTNPYFGAGFGLFGLGA----GAAILRKARTLALKQYEGKT 97 (244)
Q Consensus 22 ~~~~~~g~~~v~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~----i~~~l~~~~~~~~~~~~~~~ 97 (244)
..+...++..+..|++|+| .++..-.++.++ ..|..-+++....+++ ++.+++.-.........
T Consensus 182 ~~~m~~s~~~v~~g~~Tvg--------D~V~~Nall~ql-s~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~--- 249 (497)
T COG5265 182 RVMMTMSALGVEEGQLTVG--------DLVNVNALLFQL-SIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDA--- 249 (497)
T ss_pred HHHHhhcHHHHhhccCCch--------hHHhHHHHHhhh-hhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccC---
Confidence 3445567788899999999 888777788777 8887777755444444 11111111111111000
Q ss_pred EEEecCCCceeecC-CCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhc
Q psy1371 98 VMYTALGSEWRPFG-HPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAG 176 (244)
Q Consensus 98 ~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~ 176 (244)
++ -.++. -..+.+.|++|+|.|+...++++++ ++.+|+++.++++||+|+||||+++.+-+
T Consensus 250 -----pd--a~~L~~~~~g~v~F~~V~F~y~~~r~iL~~i-----------sf~i~~g~tvAiVg~SG~gKsTI~rllfR 311 (497)
T COG5265 250 -----PD--APPLWPVRLGAVAFINVSFAYDPRRPILNGI-----------SFTIPLGKTVAIVGESGAGKSTILRLLFR 311 (497)
T ss_pred -----CC--CccccccccceEEEEEEEeeccccchhhcCc-----------cccccCccEEEEEeCCCCcHHHHHHHHHH
Confidence 00 00011 2234578999999999988999999 99999999999999999999999999999
Q ss_pred ccCCCeEEEEeCCCCC---CHHHHHHHhhhcCCCCceehhhH-hhhhcccCcCcc
Q psy1371 177 ELEFGICVLNLSERGL---TDDRLNHLLSVAPQNSIILLEDI-DAAFVTREESSQ 227 (244)
Q Consensus 177 ~~~~~~g~i~~~~~~~---~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r~~~~~ 227 (244)
+|+++.|.|.+++.++ +.+.+|+.++.+||+.+||.|.+ .++.+.|...++
T Consensus 312 FyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~ 366 (497)
T COG5265 312 FYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATA 366 (497)
T ss_pred HhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccH
Confidence 9999999999999554 55789999999999999999999 788888765543
No 37
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.70 E-value=1.3e-17 Score=149.43 Aligned_cols=172 Identities=20% Similarity=0.209 Sum_probs=130.1
Q ss_pred chhHHHhhhhHHHHhhhcccccCeeecCCCCCcchhhHhhhhcCCCCccchhhhh-------hhHHHHHHHHHHHHHHHH
Q psy1371 18 AGFGLFGLGAGAAILRKGKFRPGRESLPPPNVSMPFMELIDSLSTNPYFGAGFGL-------FGLGAGAAILRKARTLAL 90 (244)
Q Consensus 18 ~~~~~~~~~~g~~~v~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-------~~~~~i~~~l~~~~~~~~ 90 (244)
.+....++++|+|+|++|++|.| .+++--.++... ..|++..-... .+++++.++|++......
T Consensus 254 m~lQs~iLg~GA~Lvi~ge~t~G--------~mIA~SIl~gRa-LaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~ 324 (580)
T COG4618 254 MALQSAVLGLGAWLVIKGEITPG--------MMIAGSILSGRA-LAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE 324 (580)
T ss_pred HHHHHHHHhcceeeEEcCcCCcc--------hhhHHHHHhhhh-hccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC
Confidence 34556899999999999999999 766655555555 66766544222 223335555543322111
Q ss_pred HhhcCceEEEecCCCceeecCCCCCCCCCCccccCh-hHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhH
Q psy1371 91 KQYEGKTVMYTALGSEWRPFGHPKRRRPLNSVVLDS-GVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSS 169 (244)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTt 169 (244)
-.+...|......+++.+-+ +.++.+++++ +|.++++.+++++||||+||||
T Consensus 325 ----------------~m~LP~P~g~L~Ve~l~~~PPg~~~pil~~i-----------sF~l~~G~~lgIIGPSgSGKST 377 (580)
T COG4618 325 ----------------RMPLPAPQGALSVERLTAAPPGQKKPILKGI-----------SFALQAGEALGIIGPSGSGKST 377 (580)
T ss_pred ----------------CCCCCCCCceeeEeeeeecCCCCCCcceecc-----------eeEecCCceEEEECCCCccHHH
Confidence 11234566677888888764 4456789999 9999999999999999999999
Q ss_pred HHHHHhcccCCCeEEEEeCC---CCCCHHHHHHHhhhcCCCCceehhhH-hhhhcccCcC
Q psy1371 170 FITALAGELEFGICVLNLSE---RGLTDDRLNHLLSVAPQNSIILLEDI-DAAFVTREES 225 (244)
Q Consensus 170 l~~~la~~~~~~~g~i~~~~---~~~~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r~~~ 225 (244)
|+|+|.|...|..|.+.+++ ...+.+.+-++++|.||+.-||-.+| +++++..++.
T Consensus 378 LaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~ 437 (580)
T COG4618 378 LARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEA 437 (580)
T ss_pred HHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccC
Confidence 99999999999999999999 34566788999999999999999999 8999876443
No 38
>KOG0055|consensus
Probab=99.70 E-value=3.6e-18 Score=166.66 Aligned_cols=176 Identities=16% Similarity=0.142 Sum_probs=125.3
Q ss_pred CcccchhHHHhhhhHHHHhhhcccccCeeecCCCCCcchhhH--------hhhhcCCCCccchhhhhhhHHHHHHHHHHH
Q psy1371 14 PYFGAGFGLFGLGAGAAILRKGKFRPGRESLPPPNVSMPFME--------LIDSLSTNPYFGAGFGLFGLGAGAAILRKA 85 (244)
Q Consensus 14 ~~~~~~~~~~~~~~g~~~v~~g~~~~G~~~~~~~~~~~~~~~--------~~~~~~~~p~~~~~~~~~~~~~i~~~l~~~ 85 (244)
..+....+.+++++|++++.+|.++.. ..+--+. .....+..| .+...-.+.+++.+++++.
T Consensus 899 qs~~~~~~A~~f~~G~~Li~~g~~~~~--------~~~~vf~~l~~ta~~~~~~~s~~P--d~~ka~~Aa~~iF~i~dr~ 968 (1228)
T KOG0055|consen 899 QSLLFFVYALSFWYGARLISNGEMTFE--------DVFRVFMALSFTAMALGQASSYAP--DISKAKIAAGSIFEILDRK 968 (1228)
T ss_pred HHHHHHHHHHHHHHhHHHHhcCCcCHH--------HHHHHHHHHHHHHHHHHHHHhhCc--HHHHHHHHHHHHHHHhcCC
Confidence 344556677899999999999999988 3221111 111111223 2222244444466665443
Q ss_pred HHHHHHhhcCceEEEecCCCceeecCCCCCCCCCCccccChhHH--HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCC
Q psy1371 86 RTLALKQYEGKTVMYTALGSEWRPFGHPKRRRPLNSVVLDSGVA--DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPP 163 (244)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~ 163 (244)
........ .+ ......++++++++|.|.|+.. ..+++++ ++.++.|+.++|+|||
T Consensus 969 ~~i~~~~~-----------~~-~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l-----------~l~i~~GqTvALVG~S 1025 (1228)
T KOG0055|consen 969 PTIDPDST-----------SG-GKLPNVKGDIEFRNVSFAYPTRPDVPVLNNL-----------SLSIRAGQTVALVGPS 1025 (1228)
T ss_pred CCCCCCCC-----------CC-CccccceeEEEEeeeEeeCCCCCCchhhcCC-----------cEEecCCCEEEEECCC
Confidence 21111100 00 0012345679999999999754 4688888 8999999999999999
Q ss_pred CCChhHHHHHHhcccCCCeEEEEeCCC---CCCHHHHHHHhhhcCCCCceehhhH-hhhhccc
Q psy1371 164 GCGKSSFITALAGELEFGICVLNLSER---GLTDDRLNHLLSVAPQNSIILLEDI-DAAFVTR 222 (244)
Q Consensus 164 GsGKTtl~~~la~~~~~~~g~i~~~~~---~~~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r 222 (244)
||||||++.+|-++|+|+.|.+.+++. +++.+.+|+.++.|.|+|.||-.+| |+++++.
T Consensus 1026 GsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~ 1088 (1228)
T KOG0055|consen 1026 GSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGS 1088 (1228)
T ss_pred CCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccC
Confidence 999999999999999999999999984 4566889999999999999999999 9999983
No 39
>KOG0055|consensus
Probab=99.67 E-value=1.6e-17 Score=162.26 Aligned_cols=104 Identities=18% Similarity=0.256 Sum_probs=92.5
Q ss_pred CCCCCCCCCCccccChhHHH--HHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeC
Q psy1371 111 GHPKRRRPLNSVVLDSGVAD--RILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLS 188 (244)
Q Consensus 111 ~~~~~~~~~~~v~~~~~~~~--~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~ 188 (244)
....+.++|+||.|.|+... .+++++ ++.+|.|+.++|+|||||||||++++|.++|+|+.|.|.++
T Consensus 345 ~~~~g~ief~nV~FsYPsRpdv~Il~g~-----------sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~id 413 (1228)
T KOG0055|consen 345 SSIKGEIEFRNVCFSYPSRPDVKILKGV-----------SLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLID 413 (1228)
T ss_pred cccccceEEEEEEecCCCCCcchhhCCe-----------EEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEc
Confidence 34567789999999998654 788888 99999999999999999999999999999999999999999
Q ss_pred CCCC---CHHHHHHHhhhcCCCCceehhhH-hhhhcccCcC
Q psy1371 189 ERGL---TDDRLNHLLSVAPQNSIILLEDI-DAAFVTREES 225 (244)
Q Consensus 189 ~~~~---~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r~~~ 225 (244)
|.+. ..+.+|..++.|.|+|++|-++| |++...+++.
T Consensus 414 G~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~da 454 (1228)
T KOG0055|consen 414 GEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDA 454 (1228)
T ss_pred CccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcc
Confidence 9554 45789999999999999999999 9999888654
No 40
>KOG0735|consensus
Probab=99.67 E-value=1.3e-16 Score=147.48 Aligned_cols=127 Identities=20% Similarity=0.340 Sum_probs=109.0
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC-----C
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE-----R 190 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~-----~ 190 (244)
.+.|+++..-.+.++.+.+-+.++.+.+.+|.+..++...|++||||||||||.|+.+++...+.....+...+ .
T Consensus 663 gi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyI 742 (952)
T KOG0735|consen 663 GIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYI 742 (952)
T ss_pred CCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHh
Confidence 37899998878888778788888899999999999999999999999999999999999998876554444332 4
Q ss_pred CCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCcCccc-HHHHHHHHHHhhhc
Q psy1371 191 GLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREESSQG-LEDIDAAFVTREES 242 (244)
Q Consensus 191 ~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~~~~~-~~~~~~~~l~~~~~ 242 (244)
+.++.++|..|..+. .||+||+||.|+++.+|+..+.+ .+++.+++|+.+|.
T Consensus 743 GaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG 797 (952)
T KOG0735|consen 743 GASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDG 797 (952)
T ss_pred cccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcc
Confidence 668889999998886 58999999999999999866555 57999999999985
No 41
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.65 E-value=1.2e-16 Score=150.00 Aligned_cols=161 Identities=14% Similarity=0.100 Sum_probs=112.3
Q ss_pred cccccCeeecCCCCCcchhhHhhhhcCCCCccchhhhhhhHHHHHHHHHHHHHHHHHhhcCceEEEecCCCc--eeecCC
Q psy1371 35 GKFRPGRESLPPPNVSMPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKARTLALKQYEGKTVMYTALGSE--WRPFGH 112 (244)
Q Consensus 35 g~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 112 (244)
|.+|+| ++++|+.+...+ ..|+..+...+..+++.....++..+................... ......
T Consensus 263 ~~~t~g--------~l~a~~~~~~~l-~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (555)
T TIGR01194 263 ASIDAA--------AISAFVLALLYI-KGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDK 333 (555)
T ss_pred cCCCHH--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCC
Confidence 789999 999999998888 899877776666666533333333222111000000000000000 000001
Q ss_pred CCCCCCCCccccChhHH----HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeC
Q psy1371 113 PKRRRPLNSVVLDSGVA----DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLS 188 (244)
Q Consensus 113 ~~~~~~~~~v~~~~~~~----~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~ 188 (244)
....+++++|.|.|+.+ +.+++++ ++.+++|+.++|+||||||||||+++|+|++.|+.|.+.++
T Consensus 334 ~~~~i~~~~v~f~y~~~~~~~~~~l~~v-----------s~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~ 402 (555)
T TIGR01194 334 SVDSIELKDVHMNPKAPEGSEGFALGPI-----------DLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLD 402 (555)
T ss_pred CCceEEEEEEEEEeCCCCCCcCceeccc-----------eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence 12357899999998642 2478888 88999999999999999999999999999999999999999
Q ss_pred CCCC---CHHHHHHHhhhcCCCCceehhhH
Q psy1371 189 ERGL---TDDRLNHLLSVAPQNSIILLEDI 215 (244)
Q Consensus 189 ~~~~---~~~~~~~~~~~~~q~~~lf~dei 215 (244)
+.+. +...+++.+++++|++.+|-+.+
T Consensus 403 g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti 432 (555)
T TIGR01194 403 GAAVSADSRDDYRDLFSAIFADFHLFDDLI 432 (555)
T ss_pred CEECCCCCHHHHHhhCcEEccChhhhhhhh
Confidence 8443 45678899999999999998877
No 42
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.65 E-value=4.7e-16 Score=139.78 Aligned_cols=128 Identities=23% Similarity=0.302 Sum_probs=101.1
Q ss_pred CCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC----
Q psy1371 114 KRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE---- 189 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~---- 189 (244)
.+..+|+||.+....++.+.+.+..++.++++++.+|+++++|++|+||||||||++++++|+....+...+....
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k 218 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQK 218 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHH
Confidence 4567888988877778888888899999999999999999999999999999999999999999988776665332
Q ss_pred -CCCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCcCc----ccHHHHHHHHHHhhh
Q psy1371 190 -RGLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREESS----QGLEDIDAAFVTREE 241 (244)
Q Consensus 190 -~~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~~~----~~~~~~~~~~l~~~~ 241 (244)
.+.+...+++.|..+. +++++|+||+|.++..|.+.. ....+....+++.+|
T Consensus 219 ~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld 277 (398)
T PTZ00454 219 YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMD 277 (398)
T ss_pred hcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhh
Confidence 2344566778877664 679999999999987764332 223456667776665
No 43
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.7e-16 Score=144.78 Aligned_cols=98 Identities=19% Similarity=0.264 Sum_probs=86.5
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCC---CCC
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSER---GLT 193 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~---~~~ 193 (244)
++.+++++.|+..+.+++++ ++.+++++.++|+||||||||||+++|+|++.++.|++.++|. +.+
T Consensus 321 i~~~~l~~~y~~g~~~l~~l-----------~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~ 389 (559)
T COG4988 321 ISLENLSFRYPDGKPALSDL-----------NLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLS 389 (559)
T ss_pred eeecceEEecCCCCcccCCc-----------eeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccC
Confidence 44569999987655788999 9999999999999999999999999999999999999999984 456
Q ss_pred HHHHHHHhhhcCCCCceehhhH-hhhhcccCcC
Q psy1371 194 DDRLNHLLSVAPQNSIILLEDI-DAAFVTREES 225 (244)
Q Consensus 194 ~~~~~~~~~~~~q~~~lf~dei-d~~~~~r~~~ 225 (244)
...+++.+.+++|++++|-+.+ ||+...+.+.
T Consensus 390 ~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~ 422 (559)
T COG4988 390 PEAWRKQISWVSQNPYLFAGTIRENILLARPDA 422 (559)
T ss_pred HHHHHhHeeeeCCCCccccccHHHHhhccCCcC
Confidence 6789999999999999999999 8988776544
No 44
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.4e-15 Score=140.95 Aligned_cols=129 Identities=24% Similarity=0.359 Sum_probs=110.4
Q ss_pred CCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC----
Q psy1371 114 KRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE---- 189 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~---- 189 (244)
.+...|+++......++.+.+.+...+.+++.+...++++++|++|+||||||||+|+++++...+.++..+...+
T Consensus 236 ~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk 315 (494)
T COG0464 236 DEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSK 315 (494)
T ss_pred CCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcc
Confidence 4456788877666777888889999999999998889999999999999999999999999999888877776544
Q ss_pred -CCCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCcCcccH-HHHHHHHHHhhhc
Q psy1371 190 -RGLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREESSQGL-EDIDAAFVTREES 242 (244)
Q Consensus 190 -~~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~~~~~~-~~~~~~~l~~~~~ 242 (244)
.+.+++.+++.|..+. ++|++|+||+|+++..|+...++. +++.++++..++.
T Consensus 316 ~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~ 372 (494)
T COG0464 316 WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDG 372 (494)
T ss_pred ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcC
Confidence 5677899999999987 589999999999999998666554 5899999998873
No 45
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.5e-15 Score=140.64 Aligned_cols=128 Identities=23% Similarity=0.395 Sum_probs=111.3
Q ss_pred CCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC----
Q psy1371 114 KRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE---- 189 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~---- 189 (244)
...+.|.||....+.++.+ .++..++++|..|..+|...++|++++||||||||.|+|+++|+.+.++..++.++
T Consensus 144 ~~~v~F~DVAG~dEakeel-~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEEL-SELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHH-HHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 3457899999888877765 77888999999999999999999999999999999999999999999999988877
Q ss_pred -CCCCHHHHHHHhhhcCC--CCceehhhHhhhhcccC----cCcccHHHHHHHHHHhhhc
Q psy1371 190 -RGLTDDRLNHLLSVAPQ--NSIILLEDIDAAFVTRE----ESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 190 -~~~~~~~~~~~~~~~~q--~~~lf~deid~~~~~r~----~~~~~~~~~~~~~l~~~~~ 242 (244)
.+...+++|..|..+.+ ||++|+||||++...|+ ...++.++..+++|..+|-
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDG 282 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDG 282 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhcc
Confidence 56677899999998874 89999999999999985 3456677889999888774
No 46
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.62 E-value=2.9e-16 Score=161.51 Aligned_cols=175 Identities=15% Similarity=0.085 Sum_probs=120.0
Q ss_pred HHhhhhHHHHhh-hcccccCeeecCCCCCcchhhHhhhhcCCCCccchhhhhhhHHHHHHHHHHHHHHHHHhhcCc-eEE
Q psy1371 22 LFGLGAGAAILR-KGKFRPGRESLPPPNVSMPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKARTLALKQYEGK-TVM 99 (244)
Q Consensus 22 ~~~~~~g~~~v~-~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~-~~~ 99 (244)
++++.+|++.+. .|.+++| .+.+++.|...+ ..|+..+...+..+.....-.++..+......+.. ...
T Consensus 1201 ~~~~~~~~~~v~~~~~~~~g--------~l~~~l~~~~~~-~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~ 1271 (1522)
T TIGR00957 1201 CIVLFAALFAVISRHSLSAG--------LVGLSVSYSLQV-TFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQ 1271 (1522)
T ss_pred HHHHHHHHHHHHhcCCCCHH--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccc
Confidence 344555666664 5889999 877788877777 66755555444443332222222222211100000 000
Q ss_pred EecCCCceeecCCCCCCCCCCccccChhHH-HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhccc
Q psy1371 100 YTALGSEWRPFGHPKRRRPLNSVVLDSGVA-DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
.......| ...+.++|+||+|.|... +.+++++ ++.+++|+.++++||+|||||||+++|.|++
T Consensus 1272 ~~~~~~~w----p~~g~I~f~nVsf~Y~~~~~~vL~~i-----------s~~I~~GekiaIVGrTGsGKSTL~~lL~rl~ 1336 (1522)
T TIGR00957 1272 ETAPPSGW----PPRGRVEFRNYCLRYREDLDLVLRHI-----------NVTIHGGEKVGIVGRTGAGKSSLTLGLFRIN 1336 (1522)
T ss_pred CCCCCCCC----CCCCcEEEEEEEEEeCCCCcccccce-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 00001112 123568999999998643 4688999 9999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCCC---CHHHHHHHhhhcCCCCceehhhH-hhhhc
Q psy1371 179 EFGICVLNLSERGL---TDDRLNHLLSVAPQNSIILLEDI-DAAFV 220 (244)
Q Consensus 179 ~~~~g~i~~~~~~~---~~~~~~~~~~~~~q~~~lf~dei-d~~~~ 220 (244)
+++.|.|.++|.++ +...+|+.++++||++.+|-++| |++..
T Consensus 1337 ~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp 1382 (1522)
T TIGR00957 1337 ESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDP 1382 (1522)
T ss_pred cCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCc
Confidence 99999999999554 55789999999999999998888 77754
No 47
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.62 E-value=9.9e-16 Score=127.37 Aligned_cols=125 Identities=23% Similarity=0.397 Sum_probs=99.4
Q ss_pred CCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC----
Q psy1371 114 KRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE---- 189 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~---- 189 (244)
.+.+.++||+.++..+.+ .+-|..++.+|+.+..+ .++.++++||||||||.++|++|++.+.+...+....
T Consensus 115 ~~~it~ddViGqEeAK~k-crli~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe 190 (368)
T COG1223 115 ISDITLDDVIGQEEAKRK-CRLIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred hccccHhhhhchHHHHHH-HHHHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH
Confidence 456889999998877654 47788888999866443 4788999999999999999999999998887776543
Q ss_pred -CCCCHHHHHHHhhhcCC--CCceehhhHhhhhcccCc--CcccHHHHHHHHHHhhhc
Q psy1371 190 -RGLTDDRLNHLLSVAPQ--NSIILLEDIDAAFVTREE--SSQGLEDIDAAFVTREES 242 (244)
Q Consensus 190 -~~~~~~~~~~~~~~~~q--~~~lf~deid~~~~~r~~--~~~~~~~~~~~~l~~~~~ 242 (244)
.+.....+++.+..+.+ +|++|+||+|+++..|.. -.....++.+++|+.+|.
T Consensus 191 hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDg 248 (368)
T COG1223 191 HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDG 248 (368)
T ss_pred HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccC
Confidence 34445678888888874 899999999999987753 334567889999998874
No 48
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.62 E-value=1.9e-15 Score=138.95 Aligned_cols=129 Identities=22% Similarity=0.367 Sum_probs=98.1
Q ss_pred CCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCC--------eEE
Q psy1371 113 PKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFG--------ICV 184 (244)
Q Consensus 113 ~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~--------~g~ 184 (244)
..++++|+++......++.+.+.+...+.++++|+.+++++++|++|+||||||||++++++++.+..+ ...
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 345678899876677777888889999999999999999999999999999999999999999987543 223
Q ss_pred EEeCC-------CCCCHHHHHHHhhhcC------CCCceehhhHhhhhcccCcC--cccHHHHHHHHHHhhh
Q psy1371 185 LNLSE-------RGLTDDRLNHLLSVAP------QNSIILLEDIDAAFVTREES--SQGLEDIDAAFVTREE 241 (244)
Q Consensus 185 i~~~~-------~~~~~~~~~~~~~~~~------q~~~lf~deid~~~~~r~~~--~~~~~~~~~~~l~~~~ 241 (244)
+.+.+ .+.++..++..|..+. +++++|+||+|.++..|+.. ++...++.++||..+|
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LD 326 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELD 326 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhc
Confidence 33332 2334456666666553 47899999999999877542 2333467788888776
No 49
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.61 E-value=1.3e-15 Score=133.38 Aligned_cols=125 Identities=14% Similarity=0.146 Sum_probs=91.9
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC-----C
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE-----R 190 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~-----~ 190 (244)
..+|+++...|......++.+..++...-.. ..++.++++++|+||||||||.+++++++.++.+...++..+ .
T Consensus 111 ~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~-~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~v 189 (413)
T PLN00020 111 TRSFDNLVGGYYIAPAFMDKVAVHIAKNFLA-LPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENA 189 (413)
T ss_pred hcchhhhcCccccCHHHHHHHHHHHHhhhhh-ccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcC
Confidence 3566777665554444444444333332222 478899999999999999999999999999999877776543 5
Q ss_pred CCCHHHHHHHhhhcC-------CCCceehhhHhhhhcccCcCcccH-HHHH-HHHHHhhh
Q psy1371 191 GLTDDRLNHLLSVAP-------QNSIILLEDIDAAFVTREESSQGL-EDID-AAFVTREE 241 (244)
Q Consensus 191 ~~~~~~~~~~~~~~~-------q~~~lf~deid~~~~~r~~~~~~~-~~~~-~~~l~~~~ 241 (244)
+++++.+|+.|..+. ++|+||+||||+++..|+...... .++. ..||..+|
T Consensus 190 GEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D 249 (413)
T PLN00020 190 GEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIAD 249 (413)
T ss_pred CcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhc
Confidence 778899999998764 589999999999999887443333 3554 78887765
No 50
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.60 E-value=3.2e-15 Score=144.54 Aligned_cols=127 Identities=21% Similarity=0.304 Sum_probs=106.6
Q ss_pred CCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC-----
Q psy1371 115 RRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE----- 189 (244)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~----- 189 (244)
+.+.|+++......++.+.+.+...+.+++.++.+++.+++|++|+||||||||++++++|+.++.+...+...+
T Consensus 448 ~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 448 PNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKW 527 (733)
T ss_pred cccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcc
Confidence 456789988888888888888999999999999999999999999999999999999999999988877766433
Q ss_pred CCCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCcCc--ccHHHHHHHHHHhhh
Q psy1371 190 RGLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREESS--QGLEDIDAAFVTREE 241 (244)
Q Consensus 190 ~~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~~~--~~~~~~~~~~l~~~~ 241 (244)
.+.+++.+++.|..+. +++++|+||+|.++..|+... ...+++.+++|..+|
T Consensus 528 vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ld 583 (733)
T TIGR01243 528 VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMD 583 (733)
T ss_pred cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhh
Confidence 4567788999988775 579999999999998876432 234678888888876
No 51
>KOG0726|consensus
Probab=99.60 E-value=1.5e-15 Score=128.19 Aligned_cols=126 Identities=23% Similarity=0.328 Sum_probs=94.2
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC-----C
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE-----R 190 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~-----~ 190 (244)
..++.|+..-+...+.+.+.+...+.+|++|+.+|+.+++|+.+||+||+|||.|++++|+....++-.+-.++ .
T Consensus 181 ~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkyl 260 (440)
T KOG0726|consen 181 QETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL 260 (440)
T ss_pred hhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHh
Confidence 34556665445445567777778889999999999999999999999999999999999998887765554433 3
Q ss_pred CCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCcCcccH----HHHHHHHHHhhh
Q psy1371 191 GLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREESSQGL----EDIDAAFVTREE 241 (244)
Q Consensus 191 ~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~~~~~~----~~~~~~~l~~~~ 241 (244)
+...+.+|+.|..+. .++++|+||||++..+|-++..+. .+-.-++|.++|
T Consensus 261 GdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQld 317 (440)
T KOG0726|consen 261 GDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLD 317 (440)
T ss_pred ccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhcc
Confidence 445567889988876 479999999999999886554432 233334555544
No 52
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.59 E-value=7.1e-15 Score=133.27 Aligned_cols=126 Identities=24% Similarity=0.325 Sum_probs=92.9
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC-----C
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE-----R 190 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~-----~ 190 (244)
..+|+||.......+.+.+.+...+.++++|+.+++.++++++|+||||||||++++++++.+..+...+.... .
T Consensus 179 ~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~ 258 (438)
T PTZ00361 179 LESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYL 258 (438)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhc
Confidence 35667765555555667677777889999999999999999999999999999999999999988776665433 2
Q ss_pred CCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCcCcc----cHHHHHHHHHHhhh
Q psy1371 191 GLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREESSQ----GLEDIDAAFVTREE 241 (244)
Q Consensus 191 ~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~~~~----~~~~~~~~~l~~~~ 241 (244)
+.....++..|..+. +++++|+||+|.++..|..... ...+....++.++|
T Consensus 259 Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ld 315 (438)
T PTZ00361 259 GDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLD 315 (438)
T ss_pred chHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHh
Confidence 233455777777664 5789999999999877643221 23344455666554
No 53
>KOG0651|consensus
Probab=99.59 E-value=3e-15 Score=127.16 Aligned_cols=110 Identities=25% Similarity=0.327 Sum_probs=94.8
Q ss_pred CCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC----
Q psy1371 114 KRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE---- 189 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~---- 189 (244)
.+.++|+++...++....+.+-|..++..++++.+.++.+|++++||||||+|||.++++++..++.+.-.+..+.
T Consensus 126 ~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~k 205 (388)
T KOG0651|consen 126 PRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDK 205 (388)
T ss_pred ccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhh
Confidence 3456888887777776778888889999999999999999999999999999999999999999998877666544
Q ss_pred -CCCCHHHHHHHhhhcC--CCCceehhhHhhhhcccC
Q psy1371 190 -RGLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTRE 223 (244)
Q Consensus 190 -~~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~ 223 (244)
.+++.+.+|+.|.++. ++|++|+||||+++..|.
T Consensus 206 yiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~ 242 (388)
T KOG0651|consen 206 YIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRF 242 (388)
T ss_pred hcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEe
Confidence 4666778999999997 589999999999998773
No 54
>KOG0728|consensus
Probab=99.58 E-value=3.5e-15 Score=123.65 Aligned_cols=111 Identities=29% Similarity=0.420 Sum_probs=85.8
Q ss_pred HHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC-----CCCCHHHHHHHhhhcC
Q psy1371 131 RILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE-----RGLTDDRLNHLLSVAP 205 (244)
Q Consensus 131 ~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~-----~~~~~~~~~~~~~~~~ 205 (244)
.+.+-|..++++|++|+.+|+..++|++|+||||+|||.|+++++....+.+..++.++ .++...-+|+.|-++.
T Consensus 158 eIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvmar 237 (404)
T KOG0728|consen 158 EIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAR 237 (404)
T ss_pred HHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45555667789999999999999999999999999999999999988776655555443 3444556889998887
Q ss_pred --CCCceehhhHhhhhcccCcCccc----HHHHHHHHHHhhh
Q psy1371 206 --QNSIILLEDIDAAFVTREESSQG----LEDIDAAFVTREE 241 (244)
Q Consensus 206 --q~~~lf~deid~~~~~r~~~~~~----~~~~~~~~l~~~~ 241 (244)
.++++|.||||++.+.|..++.+ ..+-.-++|.++|
T Consensus 238 ehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqld 279 (404)
T KOG0728|consen 238 EHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLD 279 (404)
T ss_pred hcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcc
Confidence 47999999999999988654433 3444455566555
No 55
>KOG0729|consensus
Probab=99.58 E-value=8e-15 Score=122.50 Aligned_cols=111 Identities=25% Similarity=0.326 Sum_probs=85.9
Q ss_pred CCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC----
Q psy1371 114 KRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE---- 189 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~---- 189 (244)
++.....||..-.+..+++.+-+...+-+++.|-.+|+.+++|+++|||||+|||.++|++|+.....+..+-.++
T Consensus 171 kpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqk 250 (435)
T KOG0729|consen 171 KPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQK 250 (435)
T ss_pred CCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHH
Confidence 4455666665555555667777777888999999999999999999999999999999999998765444333332
Q ss_pred -CCCCHHHHHHHhhhcCC--CCceehhhHhhhhcccCc
Q psy1371 190 -RGLTDDRLNHLLSVAPQ--NSIILLEDIDAAFVTREE 224 (244)
Q Consensus 190 -~~~~~~~~~~~~~~~~q--~~~lf~deid~~~~~r~~ 224 (244)
.++...-+|+.|.++.. .|++|+||||++...|-+
T Consensus 251 yvgegarmvrelf~martkkaciiffdeidaiggarfd 288 (435)
T KOG0729|consen 251 YVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFD 288 (435)
T ss_pred HhhhhHHHHHHHHHHhcccceEEEEeeccccccCcccc
Confidence 34444568899999874 599999999999987743
No 56
>KOG0652|consensus
Probab=99.57 E-value=5.4e-15 Score=123.17 Aligned_cols=125 Identities=18% Similarity=0.269 Sum_probs=91.9
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC-----CC
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE-----RG 191 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~-----~~ 191 (244)
...+|+..-....+.+.+.|..++.+.+.|+++|+.+++|+++|||||+|||.++|+.|...+.++-.+.... .+
T Consensus 168 E~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIG 247 (424)
T KOG0652|consen 168 EQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIG 247 (424)
T ss_pred ccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhc
Confidence 3455554444444566777778889999999999999999999999999999999999987765543332221 23
Q ss_pred CCHHHHHHHhhhcC--CCCceehhhHhhhhcccCcCccc----HHHHHHHHHHhhh
Q psy1371 192 LTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREESSQG----LEDIDAAFVTREE 241 (244)
Q Consensus 192 ~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~~~~~----~~~~~~~~l~~~~ 241 (244)
...+.+|..|+.+. .++++|+||+|++..+|.++... ..+-.-++|.++|
T Consensus 248 dGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLD 303 (424)
T KOG0652|consen 248 DGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD 303 (424)
T ss_pred chHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhc
Confidence 34567899999887 47999999999999998765443 3344445555554
No 57
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.57 E-value=5.9e-15 Score=136.80 Aligned_cols=127 Identities=24% Similarity=0.409 Sum_probs=99.8
Q ss_pred CCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC----
Q psy1371 114 KRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE---- 189 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~---- 189 (244)
.+..+|+|+......++.+. .+..++.+++.+.+++.+.++|++|+||||||||++++++++..+.+...++...
T Consensus 49 ~~~~~~~di~g~~~~k~~l~-~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 127 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELM-EIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 127 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHH-HHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH
Confidence 45678999988777777664 4555689999999999999999999999999999999999999888776665433
Q ss_pred -CCCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCcC----cccHHHHHHHHHHhhh
Q psy1371 190 -RGLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREES----SQGLEDIDAAFVTREE 241 (244)
Q Consensus 190 -~~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~~----~~~~~~~~~~~l~~~~ 241 (244)
.+.+.+.+++.|..+. +++++|+||+|.+...|... .+..++..+.||..+|
T Consensus 128 ~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d 186 (495)
T TIGR01241 128 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMD 186 (495)
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhc
Confidence 3445677888887764 57999999999999877542 2334567777777765
No 58
>PTZ00243 ABC transporter; Provisional
Probab=99.57 E-value=2.1e-15 Score=155.23 Aligned_cols=96 Identities=16% Similarity=0.186 Sum_probs=84.8
Q ss_pred CCCCCCccccChhHH-HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC-
Q psy1371 115 RRRPLNSVVLDSGVA-DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL- 192 (244)
Q Consensus 115 ~~~~~~~v~~~~~~~-~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~- 192 (244)
+.+.|+||.|.|... ..+++++ ++.+++|+.++|+||+|||||||+++|.|++.++.|.|.++|.++
T Consensus 1307 G~I~f~nVsf~Y~~~~~~vL~~v-----------sf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~ 1375 (1560)
T PTZ00243 1307 GSLVFEGVQMRYREGLPLVLRGV-----------SFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIG 1375 (1560)
T ss_pred CeEEEEEEEEEeCCCCCceeecc-----------eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcc
Confidence 458899999998543 3588999 999999999999999999999999999999999999999999554
Q ss_pred --CHHHHHHHhhhcCCCCceehhhH-hhhhcc
Q psy1371 193 --TDDRLNHLLSVAPQNSIILLEDI-DAAFVT 221 (244)
Q Consensus 193 --~~~~~~~~~~~~~q~~~lf~dei-d~~~~~ 221 (244)
+...+|+.++++||++++|-++| ||+...
T Consensus 1376 ~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~ 1407 (1560)
T PTZ00243 1376 AYGLRELRRQFSMIPQDPVLFDGTVRQNVDPF 1407 (1560)
T ss_pred cCCHHHHHhcceEECCCCccccccHHHHhCcc
Confidence 55789999999999999998888 787553
No 59
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.56 E-value=1.2e-14 Score=130.79 Aligned_cols=127 Identities=23% Similarity=0.317 Sum_probs=96.5
Q ss_pred CCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC-----
Q psy1371 115 RRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE----- 189 (244)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~----- 189 (244)
+...|+++......++.+.+.+...+.+++.++.+|++++++++|+||||||||+++++++..+..+...+....
T Consensus 126 p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~ 205 (389)
T PRK03992 126 PNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKF 205 (389)
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhh
Confidence 456778887777777888888888999999999999999999999999999999999999999887766665443
Q ss_pred CCCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCcCcc----cHHHHHHHHHHhhh
Q psy1371 190 RGLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREESSQ----GLEDIDAAFVTREE 241 (244)
Q Consensus 190 ~~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~~~~----~~~~~~~~~l~~~~ 241 (244)
.+.+...++..|..+. +++++|+||+|.++..|..... ...+....++..++
T Consensus 206 ~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld 263 (389)
T PRK03992 206 IGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMD 263 (389)
T ss_pred ccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcc
Confidence 2334456777777665 5789999999999877654322 23344445554443
No 60
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=9.9e-15 Score=131.92 Aligned_cols=99 Identities=18% Similarity=0.263 Sum_probs=88.0
Q ss_pred CCCCCccccChhHHH-HHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCC---C
Q psy1371 116 RRPLNSVVLDSGVAD-RILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSER---G 191 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~---~ 191 (244)
..+++||+|.|+..+ ++++++ ++.+.+|+.++|+|++||||||+++.++|.+.++.|++.+++. .
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~-----------~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~ 404 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNF-----------NLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIAS 404 (573)
T ss_pred eeeeccceeecCCCccchhhcc-----------ceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhh
Confidence 568999999997754 789999 9999999999999999999999999999999999999999994 4
Q ss_pred CCHHHHHHHhhhcCCCCceehhhH-hhhhcccCcC
Q psy1371 192 LTDDRLNHLLSVAPQNSIILLEDI-DAAFVTREES 225 (244)
Q Consensus 192 ~~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r~~~ 225 (244)
.+++.+++.++.++|.+.+|.|++ ||+.....+.
T Consensus 405 l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~A 439 (573)
T COG4987 405 LDEQALRETISVLTQRVHLFSGTLRDNLRLANPDA 439 (573)
T ss_pred CChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCC
Confidence 466789999999999999999999 8887665443
No 61
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.55 E-value=9e-16 Score=156.90 Aligned_cols=95 Identities=15% Similarity=0.260 Sum_probs=81.2
Q ss_pred CCCCCccccChhHH--HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeC-CCCC
Q psy1371 116 RRPLNSVVLDSGVA--DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLS-ERGL 192 (244)
Q Consensus 116 ~~~~~~v~~~~~~~--~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~-~~~~ 192 (244)
.+.+++|.|.|+.. ..+++++ ++.+++|+.++|+||||||||||+++|+|++.|+.|.|.++ +.++
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~i-----------sl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i 450 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDL-----------NFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNL 450 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccc-----------eEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcch
Confidence 57899999998642 3588999 99999999999999999999999999999999999999994 4433
Q ss_pred ---CHHHHHHHhhhcCCCCceehhhH-hhhhcc
Q psy1371 193 ---TDDRLNHLLSVAPQNSIILLEDI-DAAFVT 221 (244)
Q Consensus 193 ---~~~~~~~~~~~~~q~~~lf~dei-d~~~~~ 221 (244)
+...+|+.+++++|++.+|-+.+ |++...
T Consensus 451 ~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g 483 (1466)
T PTZ00265 451 KDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYS 483 (1466)
T ss_pred hhCCHHHHHHhccEecccccchhccHHHHHHhc
Confidence 45678899999999999998788 777654
No 62
>KOG0737|consensus
Probab=99.55 E-value=1.5e-14 Score=125.53 Aligned_cols=122 Identities=23% Similarity=0.362 Sum_probs=97.1
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCC-CCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC-----
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRG-IPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE----- 189 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~-~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~----- 189 (244)
.++|+|+..-...++.+.+.|...++++++|..-+ ..+++|++|+||||||||.+++++|...+..++.+.++.
T Consensus 88 ~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KW 167 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKW 167 (386)
T ss_pred eeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhh
Confidence 35678887777777788888899999999995332 567899999999999999999999999999888888775
Q ss_pred CCCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCcCccc--HHHHHHHHHH
Q psy1371 190 RGLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREESSQG--LEDIDAAFVT 238 (244)
Q Consensus 190 ~~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~~~~~--~~~~~~~~l~ 238 (244)
.+++++.++..|..+. ||+++|+||+|+++..| .++++ ...+.++|+.
T Consensus 168 fgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~ 219 (386)
T KOG0737|consen 168 FGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMA 219 (386)
T ss_pred HHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc-ccchHHHHHHHHHHHHH
Confidence 3455667788888776 89999999999999888 34333 2456666654
No 63
>PLN03130 ABC transporter C family member; Provisional
Probab=99.53 E-value=8e-15 Score=151.26 Aligned_cols=97 Identities=19% Similarity=0.177 Sum_probs=85.9
Q ss_pred CCCCCCccccChhHH-HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC-
Q psy1371 115 RRRPLNSVVLDSGVA-DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL- 192 (244)
Q Consensus 115 ~~~~~~~v~~~~~~~-~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~- 192 (244)
+.++|+||+|.|... +.+++++ ++.+++|+.++|+||+|||||||+++|.|++.++.|.|.++|.++
T Consensus 1236 g~I~f~nVsf~Y~~~~~~VL~~i-----------s~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~ 1304 (1622)
T PLN03130 1236 GSIKFEDVVLRYRPELPPVLHGL-----------SFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDIS 1304 (1622)
T ss_pred CcEEEEEEEEEeCCCCCceecce-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecc
Confidence 468899999998543 4688999 999999999999999999999999999999999999999999544
Q ss_pred --CHHHHHHHhhhcCCCCceehhhH-hhhhccc
Q psy1371 193 --TDDRLNHLLSVAPQNSIILLEDI-DAAFVTR 222 (244)
Q Consensus 193 --~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r 222 (244)
+...+|+.++++||++.+|-++| |++...+
T Consensus 1305 ~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~ 1337 (1622)
T PLN03130 1305 KFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN 1337 (1622)
T ss_pred cCCHHHHHhccEEECCCCccccccHHHHhCcCC
Confidence 55789999999999999998888 7886654
No 64
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.53 E-value=6.3e-15 Score=117.40 Aligned_cols=117 Identities=17% Similarity=0.180 Sum_probs=97.9
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH--
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD-- 194 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~-- 194 (244)
+.|++|+..|....+.++++ ++.+++++-+-++||||+||||++|+|.+...|+.|.+.+++.+.+.
T Consensus 2 I~f~~V~k~Y~~g~~aL~~v-----------s~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~ 70 (223)
T COG2884 2 IRFENVSKAYPGGREALRDV-----------SFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLK 70 (223)
T ss_pred eeehhhhhhcCCCchhhhCc-----------eEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeeccccc
Confidence 46888888887666788999 88888888889999999999999999999999999999999966543
Q ss_pred ----HHHHHHhhhcCCCCcee-----hhhHhhhhcccCcCcccHHHHHHHHHHhhhcCC
Q psy1371 195 ----DRLNHLLSVAPQNSIIL-----LEDIDAAFVTREESSQGLEDIDAAFVTREESSQ 244 (244)
Q Consensus 195 ----~~~~~~~~~~~q~~~lf-----~deid~~~~~r~~~~~~~~~~~~~~l~~~~~~~ 244 (244)
..+|+.++.|+|+.-|+ .|++-..+.-++....+.++...+.|+++++++
T Consensus 71 ~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~ 129 (223)
T COG2884 71 GREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKH 129 (223)
T ss_pred ccccchhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccch
Confidence 35899999999987665 566655556677788888999999999998763
No 65
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.53 E-value=4.6e-15 Score=120.51 Aligned_cols=114 Identities=16% Similarity=0.221 Sum_probs=91.7
Q ss_pred CCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC----C
Q psy1371 118 PLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL----T 193 (244)
Q Consensus 118 ~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~----~ 193 (244)
.++++.-.|+. ..++++| ++.+..++.+.++||||||||||+|||.++-.++.|.|.++|... .
T Consensus 4 ~i~~l~K~fg~-~~VLkgi-----------~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~ 71 (240)
T COG1126 4 EIKNLSKSFGD-KEVLKGI-----------SLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKD 71 (240)
T ss_pred EEEeeeEEeCC-eEEecCc-----------ceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhh
Confidence 34566656654 3567888 777777888999999999999999999999999999999999433 2
Q ss_pred HHHHHHHhhhcCCCCcee-----hhhH-hhhhcccCcCcccHHHHHHHHHHhhhcC
Q psy1371 194 DDRLNHLLSVAPQNSIIL-----LEDI-DAAFVTREESSQGLEDIDAAFVTREESS 243 (244)
Q Consensus 194 ~~~~~~~~~~~~q~~~lf-----~dei-d~~~~~r~~~~~~~~~~~~~~l~~~~~~ 243 (244)
...+|+.+++|+|..-|| +|++ .....-++.+.++.++....+|.++++.
T Consensus 72 ~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~ 127 (240)
T COG1126 72 ILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLA 127 (240)
T ss_pred HHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCch
Confidence 356899999999987777 6776 4555566777788889999999999875
No 66
>PLN03232 ABC transporter C family member; Provisional
Probab=99.52 E-value=2.2e-14 Score=147.58 Aligned_cols=97 Identities=18% Similarity=0.166 Sum_probs=85.8
Q ss_pred CCCCCCccccChhH-HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC-
Q psy1371 115 RRRPLNSVVLDSGV-ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL- 192 (244)
Q Consensus 115 ~~~~~~~v~~~~~~-~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~- 192 (244)
+.+.|+||.|.|.. .+.+++++ ++.+++|+.++|+||+|||||||+++|.|+++++.|.|.++|.++
T Consensus 1233 g~I~f~nVsf~Y~~~~~~vL~~i-----------sl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~ 1301 (1495)
T PLN03232 1233 GSIKFEDVHLRYRPGLPPVLHGL-----------SFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVA 1301 (1495)
T ss_pred CcEEEEEEEEEECCCCCcccccc-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhh
Confidence 45889999999953 34689999 999999999999999999999999999999999999999999554
Q ss_pred --CHHHHHHHhhhcCCCCceehhhH-hhhhccc
Q psy1371 193 --TDDRLNHLLSVAPQNSIILLEDI-DAAFVTR 222 (244)
Q Consensus 193 --~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r 222 (244)
+...+|+.++++||++.+|-+++ |++...+
T Consensus 1302 ~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~ 1334 (1495)
T PLN03232 1302 KFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS 1334 (1495)
T ss_pred hCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC
Confidence 45789999999999999999888 8887654
No 67
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.52 E-value=1.6e-14 Score=135.44 Aligned_cols=89 Identities=17% Similarity=0.139 Sum_probs=78.1
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC---
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL--- 192 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~--- 192 (244)
.+++++|.|.|+..+.+++++ ++.+++|+.++|+||||||||||+++|+|+++|+.|.+.+++.+.
T Consensus 322 ~i~~~~v~f~y~~~~~~l~~i-----------~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~ 390 (547)
T PRK10522 322 TLELRNVTFAYQDNGFSVGPI-----------NLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAE 390 (547)
T ss_pred eEEEEEEEEEeCCCCeEEecc-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCC
Confidence 477899999986444578888 899999999999999999999999999999999999999998543
Q ss_pred CHHHHHHHhhhcCCCCceehhhH
Q psy1371 193 TDDRLNHLLSVAPQNSIILLEDI 215 (244)
Q Consensus 193 ~~~~~~~~~~~~~q~~~lf~dei 215 (244)
+...+++.+++++|++.+|-+.+
T Consensus 391 ~~~~~~~~i~~v~q~~~lf~~ti 413 (547)
T PRK10522 391 QPEDYRKLFSAVFTDFHLFDQLL 413 (547)
T ss_pred CHHHHhhheEEEecChhHHHHhh
Confidence 45678899999999999987776
No 68
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.51 E-value=3.9e-15 Score=130.63 Aligned_cols=115 Identities=17% Similarity=0.194 Sum_probs=89.5
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH-H
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD-D 195 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~-~ 195 (244)
+++++|.-.|+ ...+++++ ++.++.++-+.|.|||||||||++|+|||+..|+.|.|.++|.+++. .
T Consensus 6 l~i~~v~k~yg-~~~av~~i-----------sl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lp 73 (352)
T COG3842 6 LEIRNVSKSFG-DFTAVDDI-----------SLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVP 73 (352)
T ss_pred EEEEeeeeecC-CeeEEecc-----------eeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC
Confidence 45677777777 34577888 77777777789999999999999999999999999999999976654 2
Q ss_pred HHHHHhhhcCCCCcee-----hhhHhhhhcccC-cCcccHHHHHHHHHHhhhcC
Q psy1371 196 RLNHLLSVAPQNSIIL-----LEDIDAAFVTRE-ESSQGLEDIDAAFVTREESS 243 (244)
Q Consensus 196 ~~~~~~~~~~q~~~lf-----~deid~~~~~r~-~~~~~~~~~~~~~l~~~~~~ 243 (244)
.-++.+++|+|+.-|| .|+|..-+..+. ...++.++...++|..+.++
T Consensus 74 p~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~ 127 (352)
T COG3842 74 PEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLE 127 (352)
T ss_pred hhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCch
Confidence 3567899999998888 566655555333 33345677888888887765
No 69
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.51 E-value=3e-15 Score=130.64 Aligned_cols=115 Identities=22% Similarity=0.257 Sum_probs=89.7
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH-H
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD-D 195 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~-~ 195 (244)
+.+++|...|+... +++++ ++.+..|+-+.|+|||||||||++|+|||+..++.|.|.++|..+++ .
T Consensus 4 i~l~~v~K~yg~~~-~l~~i-----------~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~ 71 (338)
T COG3839 4 LELKNVRKSFGSFE-VLKDV-----------NLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLP 71 (338)
T ss_pred EEEeeeEEEcCCce-eeecc-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC
Confidence 45677777776543 67888 67777777789999999999999999999999999999999977665 4
Q ss_pred HHHHHhhhcCCCCcee-----hhhHhhhhcccCcCcccHHHHHHHHHHhhhcC
Q psy1371 196 RLNHLLSVAPQNSIIL-----LEDIDAAFVTREESSQGLEDIDAAFVTREESS 243 (244)
Q Consensus 196 ~~~~~~~~~~q~~~lf-----~deid~~~~~r~~~~~~~~~~~~~~l~~~~~~ 243 (244)
.-++.+++|+|+..|| .|++..-+..++.+.++.++......+.+++.
T Consensus 72 P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~ 124 (338)
T COG3839 72 PEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLE 124 (338)
T ss_pred hhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCCh
Confidence 4568899999998887 56666656666666667776677766666654
No 70
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.51 E-value=1.8e-14 Score=119.65 Aligned_cols=114 Identities=13% Similarity=0.131 Sum_probs=91.3
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC---C
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL---T 193 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~---~ 193 (244)
++|++|+..|.. ..+++++ ++.++.+.-+.|+|||||||||++|+|.++..|+.|.|.+++.+. .
T Consensus 2 I~~~nvsk~y~~-~~av~~v-----------~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d 69 (309)
T COG1125 2 IEFENVSKRYGN-KKAVDDV-----------NLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLD 69 (309)
T ss_pred ceeeeeehhcCC-ceeeeee-----------eEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCC
Confidence 457888888874 4567888 777777777899999999999999999999999999999999554 4
Q ss_pred HHHHHHHhhhcCCCCcee-----hhhHhhhhcccCcCcccHHHHHHHHHHhhhc
Q psy1371 194 DDRLNHLLSVAPQNSIIL-----LEDIDAAFVTREESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 194 ~~~~~~~~~~~~q~~~lf-----~deid~~~~~r~~~~~~~~~~~~~~l~~~~~ 242 (244)
...+|+.++||-|..-|| .++|-.+..-.+......++...++|..+++
T Consensus 70 ~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL 123 (309)
T COG1125 70 PVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGL 123 (309)
T ss_pred HHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCC
Confidence 568999999999987777 4555555444455666677778888888775
No 71
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.51 E-value=6.1e-14 Score=128.94 Aligned_cols=123 Identities=23% Similarity=0.357 Sum_probs=87.6
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC-----C
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE-----R 190 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~-----~ 190 (244)
..+|++|......++.+.+... .+ .+...++|+++++|++|+||||||||++++++|+.++.+...++... .
T Consensus 224 ~~~~~dvgGl~~lK~~l~~~~~-~~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~v 300 (489)
T CHL00195 224 NEKISDIGGLDNLKDWLKKRST-SF--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIV 300 (489)
T ss_pred CCCHHHhcCHHHHHHHHHHHHH-Hh--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccccc
Confidence 4557777654444443322221 11 22334789999999999999999999999999999998888777543 4
Q ss_pred CCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCcC--cccHHHHHHHHHHhhh
Q psy1371 191 GLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREES--SQGLEDIDAAFVTREE 241 (244)
Q Consensus 191 ~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~~--~~~~~~~~~~~l~~~~ 241 (244)
+.++..+++.|..+. ++|++|+||+|.+...+... .....++...|++.++
T Consensus 301 Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~ 355 (489)
T CHL00195 301 GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLS 355 (489)
T ss_pred ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHh
Confidence 566778888887654 68999999999987654322 2235677778887765
No 72
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.49 E-value=4e-15 Score=123.56 Aligned_cols=112 Identities=20% Similarity=0.250 Sum_probs=85.8
Q ss_pred CCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHHH
Q psy1371 118 PLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRL 197 (244)
Q Consensus 118 ~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~~ 197 (244)
.++++...|+. ..+++++ ++.++.|+-++|+||||||||||+|+|||+..++.|.+.+++.... .-
T Consensus 5 ~i~~v~~~f~~-~~vl~~i-----------~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~--~p 70 (248)
T COG1116 5 EIEGVSKSFGG-VEVLEDI-----------NLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVT--GP 70 (248)
T ss_pred EEEeeEEEeCc-eEEeccc-----------eeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccC--CC
Confidence 35566666654 4577888 7778888888999999999999999999999999999999986542 23
Q ss_pred HHHhhhcCCCCcee-----hhhHhhhhcccCcCcccHHHHHHHHHHhhhcC
Q psy1371 198 NHLLSVAPQNSIIL-----LEDIDAAFVTREESSQGLEDIDAAFVTREESS 243 (244)
Q Consensus 198 ~~~~~~~~q~~~lf-----~deid~~~~~r~~~~~~~~~~~~~~l~~~~~~ 243 (244)
....++++|+..|| .||+......++.+..+.++....+|..++++
T Consensus 71 ~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~ 121 (248)
T COG1116 71 GPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLA 121 (248)
T ss_pred CCCEEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCc
Confidence 34678999988777 66665555555545556666788888888764
No 73
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.49 E-value=7.5e-15 Score=123.70 Aligned_cols=113 Identities=22% Similarity=0.270 Sum_probs=84.4
Q ss_pred CCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC---CH
Q psy1371 118 PLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL---TD 194 (244)
Q Consensus 118 ~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~---~~ 194 (244)
+.+++++.|+. ..+++++ ++.++.++-++|+||||||||||+|+|+|.++|..|.|.+++.+. +.
T Consensus 4 ~~~~ls~~y~~-~~il~~l-----------s~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~ 71 (258)
T COG1120 4 EVENLSFGYGG-KPILDDL-----------SFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSP 71 (258)
T ss_pred EEEEEEEEECC-eeEEecc-----------eEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCH
Confidence 46788999974 5688999 888888888999999999999999999999999999999999554 55
Q ss_pred HHHHHHhhhcCCCC-ceehhhH-hhhhcccCc-------CcccHHHHHHHHHHhhhc
Q psy1371 195 DRLNHLLSVAPQNS-IILLEDI-DAAFVTREE-------SSQGLEDIDAAFVTREES 242 (244)
Q Consensus 195 ~~~~~~~~~~~q~~-~lf~dei-d~~~~~r~~-------~~~~~~~~~~~~l~~~~~ 242 (244)
+.+.+.++++||.. .-+--.+ |.+..+|-. .+...++...+.|+++++
T Consensus 72 kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~ 128 (258)
T COG1120 72 KELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGL 128 (258)
T ss_pred HHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCc
Confidence 78999999999963 2222222 444444321 122334456666666655
No 74
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.48 E-value=1.9e-13 Score=130.21 Aligned_cols=122 Identities=21% Similarity=0.396 Sum_probs=86.8
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC-----CCCC
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE-----RGLT 193 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~-----~~~~ 193 (244)
|+++......++. +.++.....+++.+..++...++|++|+||||||||++++++++..+.+...++..+ .+..
T Consensus 151 ~~di~g~~~~~~~-l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~ 229 (644)
T PRK10733 151 FADVAGCDEAKEE-VAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVG 229 (644)
T ss_pred HHHHcCHHHHHHH-HHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhccc
Confidence 3444333333333 344455566666666778888899999999999999999999999998887776543 2344
Q ss_pred HHHHHHHhhhcC--CCCceehhhHhhhhcccCcC----cccHHHHHHHHHHhhh
Q psy1371 194 DDRLNHLLSVAP--QNSIILLEDIDAAFVTREES----SQGLEDIDAAFVTREE 241 (244)
Q Consensus 194 ~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~~----~~~~~~~~~~~l~~~~ 241 (244)
...+++.|..+. +++++|+||+|.++..|+.. .+..++..+.+|..+|
T Consensus 230 ~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~md 283 (644)
T PRK10733 230 ASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMD 283 (644)
T ss_pred HHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhh
Confidence 567777777664 57999999999999877542 2334567777776665
No 75
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.48 E-value=1.1e-13 Score=123.56 Aligned_cols=111 Identities=25% Similarity=0.357 Sum_probs=85.8
Q ss_pred CCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC----
Q psy1371 114 KRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE---- 189 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~---- 189 (244)
.+.+.++++......++.+.+.+...+.+++.++.+++.+++|++|+||||||||++++++++.+..+...+...+
T Consensus 116 ~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~ 195 (364)
T TIGR01242 116 RPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRK 195 (364)
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHH
Confidence 3456677777667777778888888889999999999999999999999999999999999999887765554322
Q ss_pred -CCCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCc
Q psy1371 190 -RGLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREE 224 (244)
Q Consensus 190 -~~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~ 224 (244)
.+.....++..+..+. +++++|+||+|.+...|..
T Consensus 196 ~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~ 233 (364)
T TIGR01242 196 YIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTD 233 (364)
T ss_pred hhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhcccccc
Confidence 1222334566666554 5689999999999876643
No 76
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.48 E-value=1.2e-13 Score=133.59 Aligned_cols=127 Identities=27% Similarity=0.392 Sum_probs=98.1
Q ss_pred CCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC-----
Q psy1371 115 RRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE----- 189 (244)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~----- 189 (244)
+...|+++......++.+.+.+...+.++++++.++++++++++|+||||||||++++++++.++.+...++...
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 346677777666667777778888889999999999999999999999999999999999999987766555332
Q ss_pred CCCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCcCcccH-HHHHHHHHHhhh
Q psy1371 190 RGLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREESSQGL-EDIDAAFVTREE 241 (244)
Q Consensus 190 ~~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~~~~~~-~~~~~~~l~~~~ 241 (244)
.+.+...++..|..+. +++++|+||+|.++..|+...... .++.+.+++.++
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld 307 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMD 307 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhh
Confidence 2334456777777654 568999999999998876544433 466777777665
No 77
>PLN03130 ABC transporter C family member; Provisional
Probab=99.48 E-value=1.3e-14 Score=149.66 Aligned_cols=165 Identities=18% Similarity=0.175 Sum_probs=116.1
Q ss_pred HHhhhhHHHHhhhcccccCeeecCCCCCcchhhHhhhhcCCCCccchhhhhhhHHHHHHHHHHHHHHHHHhhcCceEEEe
Q psy1371 22 LFGLGAGAAILRKGKFRPGRESLPPPNVSMPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKARTLALKQYEGKTVMYT 101 (244)
Q Consensus 22 ~~~~~~g~~~v~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 101 (244)
+.++.+|+|.+..|.+|+| ..++++.+...+ ..|+..++..+..+......+++-.+..........
T Consensus 537 v~~~~fg~~~~~~g~Lt~g--------~vf~~l~l~~~l-~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~---- 603 (1622)
T PLN03130 537 VTVVSFGVFTLLGGDLTPA--------RAFTSLSLFAVL-RFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLL---- 603 (1622)
T ss_pred HHHHHHHHHHHhCCCCCHH--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc----
Confidence 4566789999999999999 877777777777 778776665555444433222222222111000000
Q ss_pred cCCCceeecCCCCCCCCCCccccChhHH--HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC
Q psy1371 102 ALGSEWRPFGHPKRRRPLNSVVLDSGVA--DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
.+.. .......+.++|+.|.|+.. +.+++++ ++.+++|+.++++||+|||||||+++|.|+++
T Consensus 604 -~~~~---~~~~~~~I~~~nvsf~y~~~~~~~vL~~i-----------nl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~ 668 (1622)
T PLN03130 604 -PNPP---LEPGLPAISIKNGYFSWDSKAERPTLSNI-----------NLDVPVGSLVAIVGSTGEGKTSLISAMLGELP 668 (1622)
T ss_pred -cCCc---ccCCCCceEEEeeEEEccCCCCCceeece-----------eEEecCCCEEEEECCCCCCHHHHHHHHHHhhc
Confidence 0000 00112357899999998642 4578888 88899999999999999999999999999999
Q ss_pred CCe-EEEEeCCCCCCHHHHHHHhhhcCCCCceehhhH-hhhhcccCc
Q psy1371 180 FGI-CVLNLSERGLTDDRLNHLLSVAPQNSIILLEDI-DAAFVTREE 224 (244)
Q Consensus 180 ~~~-g~i~~~~~~~~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r~~ 224 (244)
+.. |.+.+ +..+++++|++.+|-++| |++...++.
T Consensus 669 ~~~GG~I~l----------~~~Iayv~Q~p~LfngTIreNI~fg~~~ 705 (1622)
T PLN03130 669 PRSDASVVI----------RGTVAYVPQVSWIFNATVRDNILFGSPF 705 (1622)
T ss_pred cCCCceEEE----------cCeEEEEcCccccCCCCHHHHHhCCCcc
Confidence 999 88874 457899999999999999 898876653
No 78
>PLN03232 ABC transporter C family member; Provisional
Probab=99.47 E-value=1e-14 Score=150.06 Aligned_cols=164 Identities=18% Similarity=0.185 Sum_probs=114.6
Q ss_pred hhhhHHHHhhhcccccCeeecCCCCCcchhhHhhhhcCCCCccchhhhhhhHHHHHHHHHHHHHHHHHhhcCceEEEecC
Q psy1371 24 GLGAGAAILRKGKFRPGRESLPPPNVSMPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKARTLALKQYEGKTVMYTAL 103 (244)
Q Consensus 24 ~~~~g~~~v~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 103 (244)
++.+|+|.+..|.+|+| ..++++.+...+ ..|+..++..+..+.....-+++-.+......+... .
T Consensus 539 ~~~fg~~~v~~~~lt~g--------~vf~~l~l~~~l-~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~-----~ 604 (1495)
T PLN03232 539 LVSFGVFVLLGGDLTPA--------RAFTSLSLFAVL-RSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILA-----Q 604 (1495)
T ss_pred HHHHHHHHHhCCCCCHH--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc-----c
Confidence 46789999999999999 888888888887 888766665544444422222222221111000000 0
Q ss_pred CCceeecCCCCCCCCCCccccChhH--HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCC
Q psy1371 104 GSEWRPFGHPKRRRPLNSVVLDSGV--ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFG 181 (244)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~ 181 (244)
... .......+.++|++|.|+. .+.+++++ ++.+++|+.++++||+|||||||+++|+|++++.
T Consensus 605 ~~~---~~~~~~~I~~~~vsF~y~~~~~~~vL~~i-----------nl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~ 670 (1495)
T PLN03232 605 NPP---LQPGAPAISIKNGYFSWDSKTSKPTLSDI-----------NLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHA 670 (1495)
T ss_pred cCC---cCCCCCcEEEEeeEEEcCCCCCCceeeee-----------EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCccc
Confidence 000 0011235789999999864 24578888 8899999999999999999999999999999998
Q ss_pred eEEEEeCCCCCCHHHHHHHhhhcCCCCceehhhH-hhhhcccCc
Q psy1371 182 ICVLNLSERGLTDDRLNHLLSVAPQNSIILLEDI-DAAFVTREE 224 (244)
Q Consensus 182 ~g~i~~~~~~~~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r~~ 224 (244)
.|.+. .++..+++++|++.+|-++| ||+...++.
T Consensus 671 ~G~i~---------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~ 705 (1495)
T PLN03232 671 ETSSV---------VIRGSVAYVPQVSWIFNATVRENILFGSDF 705 (1495)
T ss_pred CCCEE---------EecCcEEEEcCccccccccHHHHhhcCCcc
Confidence 76442 24567899999999999999 899876543
No 79
>CHL00176 ftsH cell division protein; Validated
Probab=99.47 E-value=1.6e-13 Score=129.93 Aligned_cols=126 Identities=24% Similarity=0.392 Sum_probs=96.2
Q ss_pred CCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC-----
Q psy1371 115 RRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE----- 189 (244)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~----- 189 (244)
..+.|+||......++. ++++..++++++.|..++...+++++|+||||||||++++++|+....+...++.+.
T Consensus 178 ~~~~f~dv~G~~~~k~~-l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 178 TGITFRDIAGIEEAKEE-FEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCHHhccChHHHHHH-HHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 35788998877666655 466777789999999999999999999999999999999999999887766665443
Q ss_pred CCCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCcC----cccHHHHHHHHHHhhh
Q psy1371 190 RGLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREES----SQGLEDIDAAFVTREE 241 (244)
Q Consensus 190 ~~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~~----~~~~~~~~~~~l~~~~ 241 (244)
.+.....++..|..+. .++++|+||+|.++..|+.. .+..++..+.+|+.+|
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~d 314 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMD 314 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhc
Confidence 2334456777777765 57899999999998776432 3344566777777665
No 80
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.42 E-value=1e-13 Score=132.65 Aligned_cols=86 Identities=22% Similarity=0.303 Sum_probs=71.1
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHH
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDD 195 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~ 195 (244)
.+++++|.+.++..+.+++++ ++.+++|+.++|+||||||||||+++|+|+++++.|.+..++
T Consensus 451 ~i~~~nv~~~~~~~~~il~~i-----------sl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~------ 513 (659)
T TIGR00954 451 GIKFENIPLVTPNGDVLIESL-----------SFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA------ 513 (659)
T ss_pred eEEEEeeEEECCCCCeeeecc-----------eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC------
Confidence 477899998774333578888 888999999999999999999999999999999999887653
Q ss_pred HHHHHhhhcCCCCceehhhH-hhhhc
Q psy1371 196 RLNHLLSVAPQNSIILLEDI-DAAFV 220 (244)
Q Consensus 196 ~~~~~~~~~~q~~~lf~dei-d~~~~ 220 (244)
++.+++++|++.++.+++ |++..
T Consensus 514 --~~~i~~v~Q~~~l~~~tv~eni~~ 537 (659)
T TIGR00954 514 --KGKLFYVPQRPYMTLGTLRDQIIY 537 (659)
T ss_pred --CCcEEEECCCCCCCCcCHHHHHhc
Confidence 356889999988887777 66654
No 81
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.41 E-value=1.6e-13 Score=107.46 Aligned_cols=95 Identities=14% Similarity=0.197 Sum_probs=73.0
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---HHHHHHHhhhcCCCCceehhhH-hhhhc-cc
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT---DDRLNHLLSVAPQNSIILLEDI-DAAFV-TR 222 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~---~~~~~~~~~~~~q~~~lf~dei-d~~~~-~r 222 (244)
++.+.+|..++|.||||||||||+|++|.+..|+.|.+.+.|..++ ...+|..++|+.|.+-||-|.+ |++-. .+
T Consensus 23 sl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~ 102 (223)
T COG4619 23 SLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQ 102 (223)
T ss_pred eeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccccchH
Confidence 7777788889999999999999999999999999999999996654 4679999999999999999999 77642 11
Q ss_pred CcCcccHHHHHHHHHHhhhc
Q psy1371 223 EESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 223 ~~~~~~~~~~~~~~l~~~~~ 242 (244)
-....-.....-+++.|.++
T Consensus 103 ~r~rr~dr~aa~~llar~~l 122 (223)
T COG4619 103 IRNRRPDRAAALDLLARFAL 122 (223)
T ss_pred HhccCCChHHHHHHHHHcCC
Confidence 11111123344555555554
No 82
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.40 E-value=5.9e-14 Score=117.80 Aligned_cols=80 Identities=23% Similarity=0.328 Sum_probs=68.2
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHH
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDR 196 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~ 196 (244)
++++|+.+.|+.. .++++| ++.++.++-++|+||||+|||||+|+++|++.|..|.+.+.+.......
T Consensus 5 i~v~nl~v~y~~~-~vl~~i-----------~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~ 72 (254)
T COG1121 5 IEVENLTVSYGNR-PVLEDI-----------SLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRR 72 (254)
T ss_pred EEEeeeEEEECCE-eeeecc-----------EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccc
Confidence 5688999999855 589999 8888888889999999999999999999999999999999986654433
Q ss_pred HHHHhhhcCCCC
Q psy1371 197 LNHLLSVAPQNS 208 (244)
Q Consensus 197 ~~~~~~~~~q~~ 208 (244)
-+..++|+||..
T Consensus 73 ~~~~IgYVPQ~~ 84 (254)
T COG1121 73 KRLRIGYVPQKS 84 (254)
T ss_pred cCCeEEEcCccc
Confidence 356799999953
No 83
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.40 E-value=1.5e-13 Score=119.30 Aligned_cols=115 Identities=15% Similarity=0.160 Sum_probs=88.6
Q ss_pred CCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC--HH
Q psy1371 118 PLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT--DD 195 (244)
Q Consensus 118 ~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~--~~ 195 (244)
.+.++...|+....+++++ ++.+++|+-++|.||||+|||||+|+|+|+..|+.|.+.+.|.+.. ..
T Consensus 6 ~~~~l~k~~~~~~~~l~~v-----------s~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~ 74 (293)
T COG1131 6 EVRNLTKKYGGDKTALDGV-----------SFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPA 74 (293)
T ss_pred eecceEEEeCCCCEEEece-----------eEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHH
Confidence 3456666665224567888 7778888778999999999999999999999999999999995544 35
Q ss_pred HHHHHhhhcCCCCcee-----hhhHhhhhcccCcCcccHHHHHHHHHHhhhcC
Q psy1371 196 RLNHLLSVAPQNSIIL-----LEDIDAAFVTREESSQGLEDIDAAFVTREESS 243 (244)
Q Consensus 196 ~~~~~~~~~~q~~~lf-----~deid~~~~~r~~~~~~~~~~~~~~l~~~~~~ 243 (244)
.+++.+++++|.+.++ .|.++.++..++......++..+.+++++++.
T Consensus 75 ~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~ 127 (293)
T COG1131 75 KVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLE 127 (293)
T ss_pred HHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCc
Confidence 7888999999977655 67778888777655444455677777777654
No 84
>KOG0741|consensus
Probab=99.39 E-value=4.5e-13 Score=120.87 Aligned_cols=108 Identities=24% Similarity=0.374 Sum_probs=86.0
Q ss_pred HHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEE-EeCC-----CCCCHHHHHHHhhhcCCC-
Q psy1371 135 DIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVL-NLSE-----RGLTDDRLNHLLSVAPQN- 207 (244)
Q Consensus 135 ~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i-~~~~-----~~~~~~~~~~~~~~~~q~- 207 (244)
.....+-.|++.+++|++.-+|++||||||||||.++|.|...++...-.| +..+ .+.+++++|++|+.+.++
T Consensus 237 AFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~ 316 (744)
T KOG0741|consen 237 AFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQ 316 (744)
T ss_pred HHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHH
Confidence 344445688999999999999999999999999999999999887543322 2211 677899999999988632
Q ss_pred ---------CceehhhHhhhhcccCcCcc---cHHHHHHHHHHhhhc
Q psy1371 208 ---------SIILLEDIDAAFVTREESSQ---GLEDIDAAFVTREES 242 (244)
Q Consensus 208 ---------~~lf~deid~~~~~r~~~~~---~~~~~~~~~l~~~~~ 242 (244)
.++.+||||+++..|+.... ..+.+.+++|..+|.
T Consensus 317 r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDG 363 (744)
T KOG0741|consen 317 RRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDG 363 (744)
T ss_pred HhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhccc
Confidence 58889999999999986554 357889999888763
No 85
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.37 E-value=1.2e-13 Score=115.74 Aligned_cols=116 Identities=16% Similarity=0.143 Sum_probs=90.1
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT--- 193 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~--- 193 (244)
+.++++.|.|+....+++++ ++.++.++.++++||||||||||+++++|++.|..|.+.+++...+
T Consensus 4 i~~~~l~~~y~~~~~~l~~v-----------~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~ 72 (235)
T COG1122 4 IEAENLSFRYPGRKAALKDV-----------SLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEK 72 (235)
T ss_pred EEEEEEEEEcCCCceeeeee-----------EEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchh
Confidence 34677788875445677888 8888888889999999999999999999999999999999986644
Q ss_pred -HHHHHHHhhhcCCCC--cee----hhhHhhhhcccCcCcccHHHHHHHHHHhhhcC
Q psy1371 194 -DDRLNHLLSVAPQNS--IIL----LEDIDAAFVTREESSQGLEDIDAAFVTREESS 243 (244)
Q Consensus 194 -~~~~~~~~~~~~q~~--~lf----~deid~~~~~r~~~~~~~~~~~~~~l~~~~~~ 243 (244)
...+++..++++|++ .+| .||+..-..+.+.+.++.++.....+..+++.
T Consensus 73 ~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~ 129 (235)
T COG1122 73 SLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLE 129 (235)
T ss_pred hHHHhhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCch
Confidence 567889999999875 566 45555555555555556667777777777664
No 86
>KOG0730|consensus
Probab=99.37 E-value=1.8e-12 Score=119.62 Aligned_cols=113 Identities=30% Similarity=0.430 Sum_probs=94.6
Q ss_pred HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC-----CCCCHHHHHHHhhhc
Q psy1371 130 DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE-----RGLTDDRLNHLLSVA 204 (244)
Q Consensus 130 ~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~-----~~~~~~~~~~~~~~~ 204 (244)
..+...+...+.++..++.+++++++|++++||||+|||.++++++++++.....++... .+++++.+|+.|..+
T Consensus 194 ~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a 273 (693)
T KOG0730|consen 194 SVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEA 273 (693)
T ss_pred HHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHH
Confidence 345556677788999999999999999999999999999999999999987665555443 467888999999887
Q ss_pred C--C-CCceehhhHhhhhcccCcCcccHHHHHHHHHHhhhc
Q psy1371 205 P--Q-NSIILLEDIDAAFVTREESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 205 ~--q-~~~lf~deid~~~~~r~~~~~~~~~~~~~~l~~~~~ 242 (244)
. + ++++|+||+|+++.+|........++..+++..+|.
T Consensus 274 ~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg 314 (693)
T KOG0730|consen 274 LKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDG 314 (693)
T ss_pred hccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhh
Confidence 5 6 899999999999999987666466888888887764
No 87
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.37 E-value=1.4e-12 Score=106.00 Aligned_cols=112 Identities=21% Similarity=0.255 Sum_probs=82.3
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCC-----eEEEEeCCC
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFG-----ICVLNLSER 190 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~-----~g~i~~~~~ 190 (244)
.++.+++.+-|+. .+++++| ++.++.++-.+|+|||||||||++|++.+..... .|.+.++|.
T Consensus 7 ~~~~~~l~~yYg~-~~aL~~i-----------~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ 74 (253)
T COG1117 7 AIEVRDLNLYYGD-KHALKDI-----------NLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGK 74 (253)
T ss_pred eeEecceeEEECc-hhhhccC-----------ceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCe
Confidence 3566788888875 4578999 9999999999999999999999999999987654 488888884
Q ss_pred CC-----CHHHHHHHhhhcCCCCceehhhH-hhhhcc---cCcCcccHHHHHHHHHHh
Q psy1371 191 GL-----TDDRLNHLLSVAPQNSIILLEDI-DAAFVT---REESSQGLEDIDAAFVTR 239 (244)
Q Consensus 191 ~~-----~~~~~~~~~~~~~q~~~lf~dei-d~~~~~---r~~~~~~~~~~~~~~l~~ 239 (244)
++ +...+|+.+++|+|.+--|--.| |+++.. .+...+..+++.+.-|+.
T Consensus 75 ni~~~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~ 132 (253)
T COG1117 75 NIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKK 132 (253)
T ss_pred eccCCCCCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHH
Confidence 43 44679999999999766664455 555543 222224445555555544
No 88
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.37 E-value=5.2e-13 Score=137.38 Aligned_cols=94 Identities=17% Similarity=0.182 Sum_probs=82.6
Q ss_pred CCCCCCccccChhH-HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC-
Q psy1371 115 RRRPLNSVVLDSGV-ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL- 192 (244)
Q Consensus 115 ~~~~~~~v~~~~~~-~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~- 192 (244)
+.+.|+||.+.|.. ...+++++ ++.+++|+.++|+|++|||||||+++|+|++. +.|.|.++|.++
T Consensus 1216 g~I~f~nVs~~Y~~~~~~vL~~i-----------s~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~ 1283 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEAGRAVLQDL-----------SFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWN 1283 (1490)
T ss_pred CeEEEEEEEEEeCCCCcceeecc-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcc
Confidence 45889999999864 35689999 99999999999999999999999999999997 789999999554
Q ss_pred --CHHHHHHHhhhcCCCCceehhhH-hhhhc
Q psy1371 193 --TDDRLNHLLSVAPQNSIILLEDI-DAAFV 220 (244)
Q Consensus 193 --~~~~~~~~~~~~~q~~~lf~dei-d~~~~ 220 (244)
+...+|+.++++||++.+|-+++ +++..
T Consensus 1284 ~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp 1314 (1490)
T TIGR01271 1284 SVTLQTWRKAFGVIPQKVFIFSGTFRKNLDP 1314 (1490)
T ss_pred cCCHHHHHhceEEEeCCCccCccCHHHHhCc
Confidence 45789999999999999998888 77754
No 89
>KOG0744|consensus
Probab=99.35 E-value=1.5e-12 Score=111.37 Aligned_cols=124 Identities=20% Similarity=0.309 Sum_probs=80.3
Q ss_pred CCCccccChhHHHHHHHHHHHHhcChhhh-hhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC-------CeEEEEeCC
Q psy1371 118 PLNSVVLDSGVADRILTDIKQFVADPAWY-LDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF-------GICVLNLSE 189 (244)
Q Consensus 118 ~~~~v~~~~~~~~~~l~~i~~~~~~~~~~-~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~-------~~g~i~~~~ 189 (244)
-|+++.|+.+.|+++++-....+.-.+.- ..--+.++|-++++||||||||||||+||..+.. ....+.++.
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 37788888888888877665554332221 1233677888999999999999999999987642 122344443
Q ss_pred -------CCCCHHHHHHHhhhcC----C-CC--ceehhhHhhhhcccCcCc-----ccHHHHHHHHHHhhh
Q psy1371 190 -------RGLTDDRLNHLLSVAP----Q-NS--IILLEDIDAAFVTREESS-----QGLEDIDAAFVTREE 241 (244)
Q Consensus 190 -------~~~~~~~~~~~~~~~~----q-~~--~lf~deid~~~~~r~~~~-----~~~~~~~~~~l~~~~ 241 (244)
.+++.+.+.++|..+. . .+ ++++||+++++..|.... ...-|+.+++|+++|
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlD 290 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLD 290 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHH
Confidence 3445556666655442 2 33 444999999988773321 122366777777776
No 90
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.35 E-value=2.3e-13 Score=112.94 Aligned_cols=113 Identities=13% Similarity=0.135 Sum_probs=75.1
Q ss_pred CCccccChhHH---HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH-
Q psy1371 119 LNSVVLDSGVA---DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD- 194 (244)
Q Consensus 119 ~~~v~~~~~~~---~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~- 194 (244)
++++.+.|+.. ..+++++ ++.++.++.++|+||||||||||+++|+|+++++.|.+.+++.....
T Consensus 3 ~~~l~~~~~~~~~~~~il~~~-----------s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~ 71 (218)
T cd03255 3 LKNLSKTYGGGGEKVQALKGV-----------SLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKL 71 (218)
T ss_pred EeeeEEEecCCCcceeEEeee-----------EEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhc
Confidence 45666655431 3467787 78888888899999999999999999999999999999998854432
Q ss_pred --H----HHHHHhhhcCCCCceehh-hH-hhhhcc---cCcCcccHHHHHHHHHHhhhc
Q psy1371 195 --D----RLNHLLSVAPQNSIILLE-DI-DAAFVT---REESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 195 --~----~~~~~~~~~~q~~~lf~d-ei-d~~~~~---r~~~~~~~~~~~~~~l~~~~~ 242 (244)
. ..++.+++++|++.+|.+ ++ |++... ++......++....++.++++
T Consensus 72 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l 130 (218)
T cd03255 72 SEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGL 130 (218)
T ss_pred chhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCC
Confidence 1 134568899988666533 33 444321 211111223334556666654
No 91
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.35 E-value=2.8e-13 Score=112.30 Aligned_cols=82 Identities=20% Similarity=0.224 Sum_probs=64.1
Q ss_pred CCccccChhHH-HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH---
Q psy1371 119 LNSVVLDSGVA-DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD--- 194 (244)
Q Consensus 119 ~~~v~~~~~~~-~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~--- 194 (244)
++++.+.|+.. ..+++++ ++.+++++.++|+||||||||||+++|+|++.++.|.+.+++.+...
T Consensus 4 ~~~l~~~~~~~~~~il~~i-----------sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~ 72 (216)
T TIGR00960 4 FEQVSKAYPGGHQPALDNL-----------NFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRG 72 (216)
T ss_pred EEEEEEEecCCCeeEEEee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcCh
Confidence 45666666322 2467777 78888888899999999999999999999999999999998854421
Q ss_pred ---HHHHHHhhhcCCCCcee
Q psy1371 195 ---DRLNHLLSVAPQNSIIL 211 (244)
Q Consensus 195 ---~~~~~~~~~~~q~~~lf 211 (244)
..+++.+++++|++.++
T Consensus 73 ~~~~~~~~~i~~~~q~~~~~ 92 (216)
T TIGR00960 73 REIPFLRRHIGMVFQDHRLL 92 (216)
T ss_pred hHHHHHHHhceEEecCcccc
Confidence 23567789999987665
No 92
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.34 E-value=3.9e-13 Score=111.22 Aligned_cols=82 Identities=20% Similarity=0.208 Sum_probs=63.4
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---H-
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT---D- 194 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~---~- 194 (244)
++++.+.|+....+++++ ++.+.+++.++|+||||||||||+++|+|+++++.|.+.+++.... .
T Consensus 3 ~~~l~~~~~~~~~~l~~~-----------sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~ 71 (214)
T cd03292 3 FINVTKTYPNGTAALDGI-----------NISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGR 71 (214)
T ss_pred EEEEEEEeCCCceeeeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHH
Confidence 455665553223467777 7888888889999999999999999999999999999999885432 1
Q ss_pred --HHHHHHhhhcCCCCcee
Q psy1371 195 --DRLNHLLSVAPQNSIIL 211 (244)
Q Consensus 195 --~~~~~~~~~~~q~~~lf 211 (244)
...++.+++++|++.+|
T Consensus 72 ~~~~~~~~i~~v~q~~~~~ 90 (214)
T cd03292 72 AIPYLRRKIGVVFQDFRLL 90 (214)
T ss_pred HHHHHHHheEEEecCchhc
Confidence 23567789999876655
No 93
>KOG0740|consensus
Probab=99.34 E-value=2e-12 Score=115.52 Aligned_cols=127 Identities=22% Similarity=0.366 Sum_probs=100.6
Q ss_pred CCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC-----
Q psy1371 115 RRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE----- 189 (244)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~----- 189 (244)
+++.|+++.+....+..+.+.+.+.+.+++++..+- ++.+++++.||||+|||.|++++|.+....+..++.+.
T Consensus 148 ~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~ 226 (428)
T KOG0740|consen 148 RNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKY 226 (428)
T ss_pred CcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhc
Confidence 446788888777777777778888888898885543 55689999999999999999999999999888887655
Q ss_pred CCCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCcCccc-HHHHHHHHHHhhhc
Q psy1371 190 RGLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREESSQG-LEDIDAAFVTREES 242 (244)
Q Consensus 190 ~~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~~~~~-~~~~~~~~l~~~~~ 242 (244)
.+.+++.+|..|..+. |++++|+||+|.++..|.+...+ ..++..+||-..++
T Consensus 227 ~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~ 282 (428)
T KOG0740|consen 227 VGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDG 282 (428)
T ss_pred cChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhcc
Confidence 5667788999887775 89999999999999988544333 34777777765554
No 94
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.34 E-value=5.6e-13 Score=110.78 Aligned_cols=82 Identities=16% Similarity=0.220 Sum_probs=64.2
Q ss_pred CCccccChhHH-HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC--HH
Q psy1371 119 LNSVVLDSGVA-DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT--DD 195 (244)
Q Consensus 119 ~~~v~~~~~~~-~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~--~~ 195 (244)
++++.+.|+.. ..+++++ ++.+++++.++|+||||+|||||+++|+|+++++.|.+.+++...+ ..
T Consensus 3 ~~~l~~~~~~~~~~il~~i-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~ 71 (220)
T cd03263 3 IRNLTKTYKKGTKPAVDDL-----------SLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRK 71 (220)
T ss_pred EEeeEEEeCCCCceeecce-----------EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchH
Confidence 45666665431 3477888 7888888889999999999999999999999999999999885443 23
Q ss_pred HHHHHhhhcCCCCcee
Q psy1371 196 RLNHLLSVAPQNSIIL 211 (244)
Q Consensus 196 ~~~~~~~~~~q~~~lf 211 (244)
.+++.+++++|+..++
T Consensus 72 ~~~~~i~~v~q~~~~~ 87 (220)
T cd03263 72 AARQSLGYCPQFDALF 87 (220)
T ss_pred HHhhhEEEecCcCCcc
Confidence 4566789999876555
No 95
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.33 E-value=4.6e-13 Score=110.19 Aligned_cols=112 Identities=13% Similarity=0.219 Sum_probs=74.8
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHHHH
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRLN 198 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~~~ 198 (244)
++++.+.|+....+++++ ++.+++++.++|.||||||||||+++|+|++.++.|.+.+++........+
T Consensus 2 ~~~l~~~~~~~~~~l~~v-----------~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 70 (205)
T cd03226 2 IENISFSYKKGTEILDDL-----------SLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERR 70 (205)
T ss_pred cccEEEEeCCcCceeeee-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhh
Confidence 345565554312467777 777888888999999999999999999999999999999998665444556
Q ss_pred HHhhhcCCCC--ceehhhH-hhhhcccCcCcccHHHHHHHHHHhhhc
Q psy1371 199 HLLSVAPQNS--IILLEDI-DAAFVTREESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 199 ~~~~~~~q~~--~lf~dei-d~~~~~r~~~~~~~~~~~~~~l~~~~~ 242 (244)
+.+++++|++ .++...+ |++.......... ++....+++++++
T Consensus 71 ~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~l~~~~l 116 (205)
T cd03226 71 KSIGYVMQDVDYQLFTDSVREELLLGLKELDAG-NEQAETVLKDLDL 116 (205)
T ss_pred cceEEEecChhhhhhhccHHHHHhhhhhhcCcc-HHHHHHHHHHcCC
Confidence 6788999875 2333344 5544321111111 2234455666554
No 96
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.33 E-value=5.3e-13 Score=111.92 Aligned_cols=83 Identities=20% Similarity=0.211 Sum_probs=64.9
Q ss_pred CCCccccChhHH---HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH
Q psy1371 118 PLNSVVLDSGVA---DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD 194 (244)
Q Consensus 118 ~~~~v~~~~~~~---~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~ 194 (244)
.++++.+.|+.+ ..+++++ ++.+++++.++|+||||||||||+++|+|.++++.|.+.+++.....
T Consensus 3 ~~~~l~~~~~~~~~~~~il~~~-----------s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~ 71 (233)
T cd03258 3 ELKNVSKVFGDTGGKVTALKDV-----------SLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTL 71 (233)
T ss_pred EEecceEEccCCCCceeeeecc-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccc
Confidence 355666666432 1477888 88888888899999999999999999999999999999998854321
Q ss_pred ------HHHHHHhhhcCCCCcee
Q psy1371 195 ------DRLNHLLSVAPQNSIIL 211 (244)
Q Consensus 195 ------~~~~~~~~~~~q~~~lf 211 (244)
...++.+++++|++.+|
T Consensus 72 ~~~~~~~~~~~~i~~~~q~~~~~ 94 (233)
T cd03258 72 LSGKELRKARRRIGMIFQHFNLL 94 (233)
T ss_pred CCHHHHHHHHhheEEEccCcccC
Confidence 13466789999887665
No 97
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.33 E-value=5.8e-13 Score=109.90 Aligned_cols=116 Identities=14% Similarity=0.182 Sum_probs=87.1
Q ss_pred CCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC--
Q psy1371 115 RRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL-- 192 (244)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~-- 192 (244)
..+++++|.+.++. ..+++++ ++.++.++-++++||||||||||+|+|.|++.|+.|+|.+.+.++
T Consensus 7 ~~I~vr~v~~~fG~-~~Ild~v-----------~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ 74 (263)
T COG1127 7 PLIEVRGVTKSFGD-RVILDGV-----------DLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQ 74 (263)
T ss_pred ceEEEeeeeeecCC-EEEecCc-----------eeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhc
Confidence 35678888888865 4678888 888888888999999999999999999999999999999998543
Q ss_pred -CH---HHHHHHhhhcCCCCcee-----hhhHhhhhccc-CcCcccHHHHHHHHHHhhhc
Q psy1371 193 -TD---DRLNHLLSVAPQNSIIL-----LEDIDAAFVTR-EESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 193 -~~---~~~~~~~~~~~q~~~lf-----~deid~~~~~r-~~~~~~~~~~~~~~l~~~~~ 242 (244)
++ ..+++.++.++|..-|| .||+-...... .-+....+++.-.-|..+++
T Consensus 75 ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL 134 (263)
T COG1127 75 LSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGL 134 (263)
T ss_pred cCHHHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCC
Confidence 33 35788899999998888 45544433332 22334455666666665554
No 98
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.33 E-value=5.9e-13 Score=110.51 Aligned_cols=83 Identities=14% Similarity=0.124 Sum_probs=65.2
Q ss_pred CCccccChhHH---HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC--
Q psy1371 119 LNSVVLDSGVA---DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT-- 193 (244)
Q Consensus 119 ~~~v~~~~~~~---~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~-- 193 (244)
++++.+.|+.. ..+++++ ++.+++++.++|.||||||||||+++|+|+++++.|.+.+++....
T Consensus 4 ~~~v~~~~~~~~~~~~il~~~-----------sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~ 72 (218)
T cd03266 4 ADALTKRFRDVKKTVQAVDGV-----------SFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKE 72 (218)
T ss_pred EEEEEEecCCCCccceeecce-----------EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccC
Confidence 45666666432 1477888 7888888889999999999999999999999999999999885443
Q ss_pred HHHHHHHhhhcCCCCceeh
Q psy1371 194 DDRLNHLLSVAPQNSIILL 212 (244)
Q Consensus 194 ~~~~~~~~~~~~q~~~lf~ 212 (244)
...+++.+++++|++.+|.
T Consensus 73 ~~~~~~~i~~~~q~~~~~~ 91 (218)
T cd03266 73 PAEARRRLGFVSDSTGLYD 91 (218)
T ss_pred HHHHHhhEEEecCCcccCc
Confidence 2345677899999876653
No 99
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.33 E-value=3.9e-13 Score=112.96 Aligned_cols=112 Identities=15% Similarity=0.224 Sum_probs=76.4
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---H-
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT---D- 194 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~---~- 194 (244)
++++.+.|+. ..+++++ ++.+.+++.++|+||||||||||+++|+|++.++.|.+.+++.... .
T Consensus 3 ~~~l~~~~~~-~~~l~~v-----------s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~ 70 (235)
T cd03261 3 LRGLTKSFGG-RTVLKGV-----------DLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEA 70 (235)
T ss_pred EEEEEEEECC-EEEEeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChh
Confidence 4566666643 2467777 7888888889999999999999999999999999999999885432 1
Q ss_pred --HHHHHHhhhcCCCCceehh-hH-hhhhcc---cC-cCcccHHHHHHHHHHhhhc
Q psy1371 195 --DRLNHLLSVAPQNSIILLE-DI-DAAFVT---RE-ESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 195 --~~~~~~~~~~~q~~~lf~d-ei-d~~~~~---r~-~~~~~~~~~~~~~l~~~~~ 242 (244)
..+++.+++++|...+|.+ ++ |++... +. .......+....+++++++
T Consensus 71 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l 126 (235)
T cd03261 71 ELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGL 126 (235)
T ss_pred hHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCC
Confidence 3456778999998766643 44 444321 11 1122223344556666655
No 100
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.32 E-value=1.4e-12 Score=104.73 Aligned_cols=112 Identities=18% Similarity=0.261 Sum_probs=86.0
Q ss_pred CCccccChhHH-HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHHH
Q psy1371 119 LNSVVLDSGVA-DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRL 197 (244)
Q Consensus 119 ~~~v~~~~~~~-~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~~ 197 (244)
.++++.+|+++ ..+++++ ++++..+..+.+.||||||||||++.+||+..|..|.+.+++..++...-
T Consensus 6 ~~~~sl~y~g~~~~~le~v-----------sL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga 74 (259)
T COG4525 6 VSHLSLSYEGKPRSALEDV-----------SLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA 74 (259)
T ss_pred hhheEEecCCcchhhhhcc-----------ceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc
Confidence 45667777654 3578888 88888888899999999999999999999999999999999854432111
Q ss_pred HHHhhhcCCCCcee-----hhhHhhhhcccCcCcccHHHHHHHHHHhhhcC
Q psy1371 198 NHLLSVAPQNSIIL-----LEDIDAAFVTREESSQGLEDIDAAFVTREESS 243 (244)
Q Consensus 198 ~~~~~~~~q~~~lf-----~deid~~~~~r~~~~~~~~~~~~~~l~~~~~~ 243 (244)
.-+.|+|+.-++ +|++..-...|+-.+....++..+++..+++.
T Consensus 75 --ergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~ 123 (259)
T COG4525 75 --ERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLE 123 (259)
T ss_pred --cceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcc
Confidence 125678876665 56666656667777777778888898888764
No 101
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.32 E-value=5.8e-13 Score=110.22 Aligned_cols=82 Identities=21% Similarity=0.244 Sum_probs=63.2
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---H-
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT---D- 194 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~---~- 194 (244)
++++.+.++....+++++ ++.+.+++.++|+||||||||||+++|+|++.++.|.+.+++.+.. .
T Consensus 4 ~~~l~~~~~~~~~il~~i-----------s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~ 72 (214)
T TIGR02673 4 FHNVSKAYPGGVAALHDV-----------SLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGR 72 (214)
T ss_pred EEeeeEEeCCCceeecce-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHH
Confidence 455555552123477888 7888888889999999999999999999999999999999885442 1
Q ss_pred --HHHHHHhhhcCCCCcee
Q psy1371 195 --DRLNHLLSVAPQNSIIL 211 (244)
Q Consensus 195 --~~~~~~~~~~~q~~~lf 211 (244)
..+++.+++++|++.+|
T Consensus 73 ~~~~~~~~i~~~~q~~~~~ 91 (214)
T TIGR02673 73 QLPLLRRRIGVVFQDFRLL 91 (214)
T ss_pred HHHHHHhheEEEecChhhc
Confidence 23566788999876655
No 102
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.32 E-value=7.7e-13 Score=115.53 Aligned_cols=114 Identities=14% Similarity=0.120 Sum_probs=81.0
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH--
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD-- 194 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~-- 194 (244)
+.++++.+.|+. ..+++++ ++.++.++-++|+||||+|||||+++|+|++.|+.|.+.+++.+...
T Consensus 8 i~i~~l~k~~~~-~~~l~~v-----------sl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~ 75 (306)
T PRK13537 8 IDFRNVEKRYGD-KLVVDGL-----------SFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA 75 (306)
T ss_pred EEEEeEEEEECC-eEEEecc-----------eEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch
Confidence 567788877754 3477888 88888888899999999999999999999999999999999855432
Q ss_pred HHHHHHhhhcCCCCcee-----hhhHhhhhcccCcCcccHHHHHHHHHHhhhc
Q psy1371 195 DRLNHLLSVAPQNSIIL-----LEDIDAAFVTREESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 195 ~~~~~~~~~~~q~~~lf-----~deid~~~~~r~~~~~~~~~~~~~~l~~~~~ 242 (244)
...++.+++++|++.++ .|++...+..++.......+....++.++++
T Consensus 76 ~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l 128 (306)
T PRK13537 76 RHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKL 128 (306)
T ss_pred HHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 34678899999986665 3333333332222222233334566666654
No 103
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.32 E-value=1.2e-12 Score=110.47 Aligned_cols=91 Identities=15% Similarity=0.222 Sum_probs=68.1
Q ss_pred CCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH---
Q psy1371 118 PLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD--- 194 (244)
Q Consensus 118 ~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~--- 194 (244)
.++++.+.|+....+++++ ++.+++++.++|+||||||||||+++|+|.++++.|.+.+++.....
T Consensus 3 ~~~~l~~~~~~~~~il~~v-----------s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~ 71 (243)
T TIGR02315 3 EVENLSKVYPNGKQALKNI-----------NLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRG 71 (243)
T ss_pred EEEeeeeecCCCcceeecc-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCH
Confidence 3566666664123477888 88888888899999999999999999999999999999998854321
Q ss_pred ---HHHHHHhhhcCCCCceehh-hH-hhhh
Q psy1371 195 ---DRLNHLLSVAPQNSIILLE-DI-DAAF 219 (244)
Q Consensus 195 ---~~~~~~~~~~~q~~~lf~d-ei-d~~~ 219 (244)
..+++.+++++|+..++.+ ++ |++.
T Consensus 72 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~ 101 (243)
T TIGR02315 72 KKLRKLRRRIGMIFQHYNLIERLTVLENVL 101 (243)
T ss_pred HHHHHHHhheEEEcCCCcccccccHHHHHh
Confidence 2356778999988665532 33 5443
No 104
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.31 E-value=6e-13 Score=109.89 Aligned_cols=80 Identities=19% Similarity=0.217 Sum_probs=62.6
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHHHH
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRLN 198 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~~~ 198 (244)
++++.+.|+. ..+++++ ++.+.+++.++|+||||||||||+++|+|.++++.|.+.+++...+. ..+
T Consensus 3 ~~~l~~~~~~-~~~l~~v-----------~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~~~ 69 (210)
T cd03269 3 VENVTKRFGR-VTALDDI-----------SFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI-AAR 69 (210)
T ss_pred EEEEEEEECC-EEEEeee-----------EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH-HHH
Confidence 3455555532 2356677 77888888899999999999999999999999999999999876543 456
Q ss_pred HHhhhcCCCCcee
Q psy1371 199 HLLSVAPQNSIIL 211 (244)
Q Consensus 199 ~~~~~~~q~~~lf 211 (244)
+.+++++|+..++
T Consensus 70 ~~i~~~~q~~~~~ 82 (210)
T cd03269 70 NRIGYLPEERGLY 82 (210)
T ss_pred ccEEEeccCCcCC
Confidence 6788899876555
No 105
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.31 E-value=1.1e-12 Score=108.28 Aligned_cols=111 Identities=15% Similarity=0.184 Sum_probs=74.7
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH--HH
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD--DR 196 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~--~~ 196 (244)
++++.+.++. ..+++++ ++.++++ .++|+||||||||||+++|+|++.++.|.+.+++..... ..
T Consensus 3 ~~~~~~~~~~-~~~l~~v-----------s~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~ 69 (211)
T cd03264 3 LENLTKRYGK-KRALDGV-----------SLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQK 69 (211)
T ss_pred EEEEEEEECC-EEEEcce-----------eEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHH
Confidence 4556665543 2467777 7777777 789999999999999999999999999999998865432 34
Q ss_pred HHHHhhhcCCCCceehh-hH-hhhhc---ccCcCcccHHHHHHHHHHhhhc
Q psy1371 197 LNHLLSVAPQNSIILLE-DI-DAAFV---TREESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 197 ~~~~~~~~~q~~~lf~d-ei-d~~~~---~r~~~~~~~~~~~~~~l~~~~~ 242 (244)
+++.+++++|++.+|.+ .+ |++.. .++......++....+++++++
T Consensus 70 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l 120 (211)
T cd03264 70 LRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNL 120 (211)
T ss_pred HHhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC
Confidence 56778999988766532 33 44332 1111112223344556666654
No 106
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.31 E-value=8.3e-13 Score=108.69 Aligned_cols=116 Identities=15% Similarity=0.159 Sum_probs=85.1
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC---C
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL---T 193 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~---~ 193 (244)
+++++++-.|......+++| ++.++.++-++|+||||+|||||+|+|.++.+++.|++.+++.+. .
T Consensus 4 i~~~nl~k~yp~~~~aL~~V-----------nl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~ 72 (258)
T COG3638 4 IEVKNLSKTYPGGHQALKDV-----------NLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLK 72 (258)
T ss_pred EEEeeeeeecCCCceeeeeE-----------eEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccc
Confidence 45677777775556788999 899999999999999999999999999999999999999998443 2
Q ss_pred H---HHHHHHhhhcCCCCcee--hhhHhhhhcccCcC-----------cccHHHHHHHHHHhhhcC
Q psy1371 194 D---DRLNHLLSVAPQNSIIL--LEDIDAAFVTREES-----------SQGLEDIDAAFVTREESS 243 (244)
Q Consensus 194 ~---~~~~~~~~~~~q~~~lf--~deid~~~~~r~~~-----------~~~~~~~~~~~l~~~~~~ 243 (244)
. ..+|+.+++++|..-|. .+-++++...|-.. +.+.....-..|+|+++.
T Consensus 73 ~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~ 138 (258)
T COG3638 73 GKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGIL 138 (258)
T ss_pred hHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcH
Confidence 2 35678899999865554 33346655544221 223445555667777764
No 107
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.31 E-value=1.1e-12 Score=109.23 Aligned_cols=81 Identities=15% Similarity=0.172 Sum_probs=63.1
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC--HHH
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT--DDR 196 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~--~~~ 196 (244)
++++...|+. ..+++++ ++.+.+++.++|+||||+|||||+++|+|.+.++.|.+.+++.... ...
T Consensus 3 ~~~~~~~~~~-~~il~~v-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~ 70 (220)
T cd03265 3 VENLVKKYGD-FEAVRGV-----------SFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPRE 70 (220)
T ss_pred EEEEEEEECC-EEeeece-----------eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHH
Confidence 4556655543 2467788 7788888889999999999999999999999999999999885432 234
Q ss_pred HHHHhhhcCCCCcee
Q psy1371 197 LNHLLSVAPQNSIIL 211 (244)
Q Consensus 197 ~~~~~~~~~q~~~lf 211 (244)
+++.+++++|++.++
T Consensus 71 ~~~~i~~~~q~~~~~ 85 (220)
T cd03265 71 VRRRIGIVFQDLSVD 85 (220)
T ss_pred HhhcEEEecCCcccc
Confidence 566788999876554
No 108
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.31 E-value=3.6e-13 Score=138.85 Aligned_cols=164 Identities=13% Similarity=0.128 Sum_probs=104.5
Q ss_pred hhhhHHHHhhh--cccccCeeecCCCCCcchhhHhhhhcCCCCccchhhhhhhHHHHHHHHHHHHHHHHHhhcCceEEEe
Q psy1371 24 GLGAGAAILRK--GKFRPGRESLPPPNVSMPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKARTLALKQYEGKTVMYT 101 (244)
Q Consensus 24 ~~~~g~~~v~~--g~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 101 (244)
+++++.|.+.. +.++.+ ..++.+.+...+ ..|+..++..+..+.....-+++-.+............
T Consensus 556 ~~~f~~~~~~~~~~~l~~~--------~~f~~l~l~~~l-~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~-- 624 (1522)
T TIGR00957 556 LITFAVYVTVDENNILDAE--------KAFVSLALFNIL-RFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSI-- 624 (1522)
T ss_pred HHHHHHHHHhcCCCCcCHH--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc--
Confidence 44567777764 456777 555555556556 66776666555444442222222222111100000000
Q ss_pred cCCCceeecCCCCCCCCCCccccChhHH-HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 102 ALGSEWRPFGHPKRRRPLNSVVLDSGVA-DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
..... .......+.++++.+.++.. +.+++++ ++.+++|+.++++||+|||||||+++|+|++++
T Consensus 625 -~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~l~~i-----------sl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~ 690 (1522)
T TIGR00957 625 -ERRTI--KPGEGNSITVHNATFTWARDLPPTLNGI-----------TFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK 690 (1522)
T ss_pred -ccccc--CCCCCCcEEEEEeEEEcCCCCCceeeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcc
Confidence 00000 00111247788999988532 3577888 888999999999999999999999999999999
Q ss_pred CeEEEEeCCCCCCHHHHHHHhhhcCCCCceehhhH-hhhhccc
Q psy1371 181 GICVLNLSERGLTDDRLNHLLSVAPQNSIILLEDI-DAAFVTR 222 (244)
Q Consensus 181 ~~g~i~~~~~~~~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r 222 (244)
..|.+.+++ .+++++|++.++-+++ |++...+
T Consensus 691 ~~G~i~~~g----------~i~yv~Q~~~l~~~Ti~eNI~~g~ 723 (1522)
T TIGR00957 691 VEGHVHMKG----------SVAYVPQQAWIQNDSLRENILFGK 723 (1522)
T ss_pred CCcEEEECC----------EEEEEcCCccccCCcHHHHhhcCC
Confidence 999999875 3788999888887777 7777554
No 109
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.30 E-value=9.9e-13 Score=108.72 Aligned_cols=81 Identities=19% Similarity=0.211 Sum_probs=64.5
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC-----
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT----- 193 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~----- 193 (244)
++++.+.|+. ..+++++ ++.+++++.++|.||||||||||+++|+|+++++.|.+.+++....
T Consensus 3 ~~~l~~~~~~-~~~l~~~-----------s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~ 70 (213)
T cd03262 3 IKNLHKSFGD-FHVLKGI-----------DLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKN 70 (213)
T ss_pred EEEEEEEECC-eEeecCc-----------eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchh
Confidence 4566666643 3467777 8888888889999999999999999999999999999999885442
Q ss_pred HHHHHHHhhhcCCCCcee
Q psy1371 194 DDRLNHLLSVAPQNSIIL 211 (244)
Q Consensus 194 ~~~~~~~~~~~~q~~~lf 211 (244)
...+++.+++++|++.++
T Consensus 71 ~~~~~~~i~~~~q~~~~~ 88 (213)
T cd03262 71 INELRQKVGMVFQQFNLF 88 (213)
T ss_pred HHHHHhcceEEecccccC
Confidence 234567789999887665
No 110
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.30 E-value=8.3e-13 Score=109.26 Aligned_cols=81 Identities=21% Similarity=0.302 Sum_probs=63.1
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH-HHH
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD-DRL 197 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~-~~~ 197 (244)
++++.+.|+. ..+++++ ++.++.++.++|+||||+|||||+++|+|++.++.|.+.+++.+... ...
T Consensus 3 ~~~l~~~~~~-~~il~~v-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~ 70 (213)
T cd03259 3 LKGLSKTYGS-VRALDDL-----------SLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPE 70 (213)
T ss_pred eeeeEEEeCC-eeeecce-----------eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchh
Confidence 4566666643 3467888 78888888899999999999999999999999999999998854432 123
Q ss_pred HHHhhhcCCCCcee
Q psy1371 198 NHLLSVAPQNSIIL 211 (244)
Q Consensus 198 ~~~~~~~~q~~~lf 211 (244)
++.+++++|+..++
T Consensus 71 ~~~i~~v~q~~~~~ 84 (213)
T cd03259 71 RRNIGMVFQDYALF 84 (213)
T ss_pred hccEEEEcCchhhc
Confidence 45688899876555
No 111
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.30 E-value=4.9e-13 Score=118.30 Aligned_cols=115 Identities=12% Similarity=0.129 Sum_probs=79.1
Q ss_pred CCCccccChhH---HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC-
Q psy1371 118 PLNSVVLDSGV---ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT- 193 (244)
Q Consensus 118 ~~~~v~~~~~~---~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~- 193 (244)
+++++.+.|.. ...+++++ ++.+++++.++|+||||||||||+|+|+|+..|+.|.+.+++.+..
T Consensus 3 ~~~~lsk~y~~~~~~~~~L~~v-----------sl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~ 71 (343)
T TIGR02314 3 KLSNITKVFHQGTKTIQALNNV-----------SLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTT 71 (343)
T ss_pred EEEEEEEEECCCCcceEEEeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc
Confidence 35566655531 12467888 8888888889999999999999999999999999999999985443
Q ss_pred --HH---HHHHHhhhcCCCCceeh-hhH-hhhhcc---cCcCcccHHHHHHHHHHhhhcC
Q psy1371 194 --DD---RLNHLLSVAPQNSIILL-EDI-DAAFVT---REESSQGLEDIDAAFVTREESS 243 (244)
Q Consensus 194 --~~---~~~~~~~~~~q~~~lf~-dei-d~~~~~---r~~~~~~~~~~~~~~l~~~~~~ 243 (244)
.. ..++.+++++|+..++. -++ |+++.. ++......++....+++++++.
T Consensus 72 ~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~ 131 (343)
T TIGR02314 72 LSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLG 131 (343)
T ss_pred CCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc
Confidence 22 24667899999866662 233 444322 2222233344556777777653
No 112
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=3.3e-13 Score=120.12 Aligned_cols=113 Identities=19% Similarity=0.259 Sum_probs=78.3
Q ss_pred CCCccccCh-hHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH-H
Q psy1371 118 PLNSVVLDS-GVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD-D 195 (244)
Q Consensus 118 ~~~~v~~~~-~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~-~ 195 (244)
.++++.+.| +. ..+++++ ++.++.++-++|+||||||||||+++|+|+..++.|.+.+++..... .
T Consensus 5 ~i~~l~~~~~~~-~~~l~~v-----------sl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~ 72 (356)
T PRK11650 5 KLQAVRKSYDGK-TQVIKGI-----------DLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELE 72 (356)
T ss_pred EEEeEEEEeCCC-CEEEeee-----------eEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC
Confidence 456666665 32 2466777 78888888899999999999999999999999999999999854432 1
Q ss_pred HHHHHhhhcCCCCceehh-hH-hhhhcc---cCcCcccHHHHHHHHHHhhhc
Q psy1371 196 RLNHLLSVAPQNSIILLE-DI-DAAFVT---REESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 196 ~~~~~~~~~~q~~~lf~d-ei-d~~~~~---r~~~~~~~~~~~~~~l~~~~~ 242 (244)
..++.+++++|+..+|.. ++ |++... ++......++....+++++++
T Consensus 73 ~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL 124 (356)
T PRK11650 73 PADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILEL 124 (356)
T ss_pred HHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCC
Confidence 234678999998877732 33 555432 222222333445666777665
No 113
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.30 E-value=4.7e-12 Score=102.78 Aligned_cols=114 Identities=22% Similarity=0.319 Sum_probs=83.6
Q ss_pred CCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---H
Q psy1371 118 PLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT---D 194 (244)
Q Consensus 118 ~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~---~ 194 (244)
+.+|++++-.++ .+++++ ++.+.+++-.+|+||||+|||||+|+|+|++.|+.|.+.+++.+.+ .
T Consensus 3 ~a~nls~~~~Gr-~ll~~v-----------sl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~ 70 (259)
T COG4559 3 RAENLSYSLAGR-RLLDGV-----------SLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPP 70 (259)
T ss_pred eeeeeEEEeecc-eeccCc-----------ceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCH
Confidence 456777776654 577888 8888888889999999999999999999999999999999996543 4
Q ss_pred HHHHHHhhhcCCCCce-e---hhhH-hhhhcccCcCc--ccHHHHHHHHHHhhhcC
Q psy1371 195 DRLNHLLSVAPQNSII-L---LEDI-DAAFVTREESS--QGLEDIDAAFVTREESS 243 (244)
Q Consensus 195 ~~~~~~~~~~~q~~~l-f---~dei-d~~~~~r~~~~--~~~~~~~~~~l~~~~~~ 243 (244)
..+.+.-+..||++.+ | ..|+ ..-......+. .+.+++..+.|.++|.+
T Consensus 71 ~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~ 126 (259)
T COG4559 71 EELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLS 126 (259)
T ss_pred HHHHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChh
Confidence 6677788888987533 3 3333 32222221222 25667888888888764
No 114
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=4.6e-13 Score=118.88 Aligned_cols=115 Identities=12% Similarity=0.148 Sum_probs=81.9
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH-H
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD-D 195 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~-~ 195 (244)
+.++++...|+. ..+++++ ++.++.++.++|+||||||||||+++|+|+..++.|.+.+++..+.. .
T Consensus 7 l~~~~l~~~~~~-~~~l~~i-----------sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~ 74 (351)
T PRK11432 7 VVLKNITKRFGS-NTVIDNL-----------NLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRS 74 (351)
T ss_pred EEEEeEEEEECC-eEEEeee-----------EEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC
Confidence 456777777754 3467777 88888888899999999999999999999999999999999855432 1
Q ss_pred HHHHHhhhcCCCCceehh-hH-hhhhc---ccCcCcccHHHHHHHHHHhhhcC
Q psy1371 196 RLNHLLSVAPQNSIILLE-DI-DAAFV---TREESSQGLEDIDAAFVTREESS 243 (244)
Q Consensus 196 ~~~~~~~~~~q~~~lf~d-ei-d~~~~---~r~~~~~~~~~~~~~~l~~~~~~ 243 (244)
..++.+++++|+..+|.. ++ |++.. .+.......++....+++++++.
T Consensus 75 ~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~ 127 (351)
T PRK11432 75 IQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLA 127 (351)
T ss_pred HHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCc
Confidence 234678999998877732 33 55543 22223334444556677766653
No 115
>PRK10908 cell division protein FtsE; Provisional
Probab=99.29 E-value=1.2e-12 Score=109.08 Aligned_cols=82 Identities=17% Similarity=0.165 Sum_probs=62.7
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---HH
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT---DD 195 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~---~~ 195 (244)
++++.+.+.....+++++ ++.+.+++.++|.||||+|||||+++|+|+++++.|.+.+++.+.. ..
T Consensus 4 ~~~l~~~~~~~~~~l~~v-----------sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~ 72 (222)
T PRK10908 4 FEHVSKAYLGGRQALQGV-----------TFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNR 72 (222)
T ss_pred EEeeEEEecCCCeEEeee-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChh
Confidence 455665552123467777 7888888889999999999999999999999999999999885432 11
Q ss_pred ---HHHHHhhhcCCCCcee
Q psy1371 196 ---RLNHLLSVAPQNSIIL 211 (244)
Q Consensus 196 ---~~~~~~~~~~q~~~lf 211 (244)
.+++.+++++|++.++
T Consensus 73 ~~~~~~~~i~~~~q~~~~~ 91 (222)
T PRK10908 73 EVPFLRRQIGMIFQDHHLL 91 (222)
T ss_pred HHHHHHhheEEEecCcccc
Confidence 2567789999876554
No 116
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.29 E-value=1.5e-12 Score=109.56 Aligned_cols=90 Identities=17% Similarity=0.224 Sum_probs=67.6
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC-----
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT----- 193 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~----- 193 (244)
++++.+.|+....+++++ ++.+++++.++|+||||||||||+++|+|++.++.|.+.+++....
T Consensus 3 ~~~l~~~~~~~~~~l~~v-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~ 71 (241)
T cd03256 3 VENLSKTYPNGKKALKDV-----------SLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGK 71 (241)
T ss_pred EeeEEEecCCccEEEecc-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHh
Confidence 456666664313467777 7888888889999999999999999999999999999999885443
Q ss_pred -HHHHHHHhhhcCCCCceeh-hhH-hhhh
Q psy1371 194 -DDRLNHLLSVAPQNSIILL-EDI-DAAF 219 (244)
Q Consensus 194 -~~~~~~~~~~~~q~~~lf~-dei-d~~~ 219 (244)
...+++.+++++|+..+|. .++ |++.
T Consensus 72 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~ 100 (241)
T cd03256 72 ALRQLRRQIGMIFQQFNLIERLSVLENVL 100 (241)
T ss_pred HHHHHHhccEEEcccCcccccCcHHHHHH
Confidence 2345677899998866653 244 4443
No 117
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.29 E-value=1.8e-12 Score=109.35 Aligned_cols=113 Identities=11% Similarity=0.143 Sum_probs=76.5
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---HH
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT---DD 195 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~---~~ 195 (244)
++++.+.|+....+++++ ++.+++++.++|+||||+|||||+++|+|.+.++.|.+.+++.... ..
T Consensus 3 ~~~l~~~~~~~~~~l~~i-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~ 71 (242)
T cd03295 3 FENVTKRYGGGKKAVNNL-----------NLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPV 71 (242)
T ss_pred EEEEEEEeCCcceEeeee-----------EEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChH
Confidence 456666654312367777 8888888889999999999999999999999999999999885432 33
Q ss_pred HHHHHhhhcCCCCceeh-hhH-hhhhcc---cCcCcccHHHHHHHHHHhhhc
Q psy1371 196 RLNHLLSVAPQNSIILL-EDI-DAAFVT---REESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 196 ~~~~~~~~~~q~~~lf~-dei-d~~~~~---r~~~~~~~~~~~~~~l~~~~~ 242 (244)
.+++.+++++|+..++. .++ |++... ++......++...++++++++
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l 123 (242)
T cd03295 72 ELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGL 123 (242)
T ss_pred HhhcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 45667889999866653 233 444321 111112223334566666654
No 118
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.29 E-value=4.8e-13 Score=118.93 Aligned_cols=115 Identities=17% Similarity=0.187 Sum_probs=80.7
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH-H
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD-D 195 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~-~ 195 (244)
++++++...|+. ..+++++ ++.++.++.++|+||||||||||+++|+|+..++.|.+.+++..... .
T Consensus 5 l~~~~l~~~~~~-~~~l~~v-----------s~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~ 72 (353)
T TIGR03265 5 LSIDNIRKRFGA-FTALKDI-----------SLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLP 72 (353)
T ss_pred EEEEEEEEEeCC-eEEEEee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCC
Confidence 456677777654 2356777 78888888899999999999999999999999999999999854432 2
Q ss_pred HHHHHhhhcCCCCceeh-hhH-hhhhcc---cCcCcccHHHHHHHHHHhhhcC
Q psy1371 196 RLNHLLSVAPQNSIILL-EDI-DAAFVT---REESSQGLEDIDAAFVTREESS 243 (244)
Q Consensus 196 ~~~~~~~~~~q~~~lf~-dei-d~~~~~---r~~~~~~~~~~~~~~l~~~~~~ 243 (244)
..++.+++++|+..+|- -++ |++... +.......++....+++++++.
T Consensus 73 ~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~ 125 (353)
T TIGR03265 73 PQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLP 125 (353)
T ss_pred HHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC
Confidence 23567899999887772 122 444422 2222233445566777777654
No 119
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.28 E-value=1.6e-12 Score=108.66 Aligned_cols=88 Identities=24% Similarity=0.250 Sum_probs=67.2
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhccc-----CCCeEEEEeCCCCCC
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGEL-----EFGICVLNLSERGLT 193 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~-----~~~~g~i~~~~~~~~ 193 (244)
++++.+.|+.+ .+++++ ++.+++++.++|.||||||||||+++|+|.+ .++.|.+.+++....
T Consensus 3 ~~~l~~~~~~~-~~l~~v-----------sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~ 70 (227)
T cd03260 3 LRDLNVYYGDK-HALKDI-----------SLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIY 70 (227)
T ss_pred EEEEEEEcCCc-eeeeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhh
Confidence 45666666542 467777 7888888889999999999999999999999 899999999885442
Q ss_pred -----HHHHHHHhhhcCCCCceehhhH-hhh
Q psy1371 194 -----DDRLNHLLSVAPQNSIILLEDI-DAA 218 (244)
Q Consensus 194 -----~~~~~~~~~~~~q~~~lf~dei-d~~ 218 (244)
...+++.+++++|+..++-.++ |++
T Consensus 71 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l 101 (227)
T cd03260 71 DLDVDVLELRRRVGMVFQKPNPFPGSIYDNV 101 (227)
T ss_pred hcchHHHHHHhhEEEEecCchhccccHHHHH
Confidence 2345677899999876653333 444
No 120
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.28 E-value=4.1e-12 Score=105.22 Aligned_cols=102 Identities=18% Similarity=0.221 Sum_probs=74.8
Q ss_pred HHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC---CHH----HHHHHhhh
Q psy1371 131 RILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL---TDD----RLNHLLSV 203 (244)
Q Consensus 131 ~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~---~~~----~~~~~~~~ 203 (244)
.+++++ ++.++.|+-++|+||||||||||+++|+++..|+.|.+.+++.+. +++ ..++.+++
T Consensus 19 ~~L~~v-----------~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGf 87 (226)
T COG1136 19 EALKDV-----------NLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGF 87 (226)
T ss_pred Eecccc-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEE
Confidence 467777 777888888899999999999999999999999999999998433 332 24567999
Q ss_pred cCCCCcee-----hhhHhhhhcccCcCcccHHHHHHHHHHhhhcC
Q psy1371 204 APQNSIIL-----LEDIDAAFVTREESSQGLEDIDAAFVTREESS 243 (244)
Q Consensus 204 ~~q~~~lf-----~deid~~~~~r~~~~~~~~~~~~~~l~~~~~~ 243 (244)
++|..-|+ .|++...+...........+....++.+++++
T Consensus 88 vFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~ 132 (226)
T COG1136 88 VFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLE 132 (226)
T ss_pred ECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCCh
Confidence 99986665 66666433333333224556677777776654
No 121
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.28 E-value=6.3e-13 Score=110.56 Aligned_cols=80 Identities=23% Similarity=0.218 Sum_probs=61.7
Q ss_pred CCccccChhHH---HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHH
Q psy1371 119 LNSVVLDSGVA---DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDD 195 (244)
Q Consensus 119 ~~~v~~~~~~~---~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~ 195 (244)
++++.+.|+.. ..+++++ ++.+++++.++|+||||||||||+++|+|.+.++.|.+.+++....
T Consensus 3 ~~~l~~~~~~~~~~~~il~~v-----------s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~-- 69 (220)
T cd03293 3 VRNVSKTYGGGGGAVTALEDI-----------SLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVT-- 69 (220)
T ss_pred EEEEEEEcCCCCcceEEEece-----------eEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECc--
Confidence 45555555421 2466777 7778888889999999999999999999999999999999886543
Q ss_pred HHHHHhhhcCCCCcee
Q psy1371 196 RLNHLLSVAPQNSIIL 211 (244)
Q Consensus 196 ~~~~~~~~~~q~~~lf 211 (244)
..++.+++++|.+.++
T Consensus 70 ~~~~~i~~v~q~~~~~ 85 (220)
T cd03293 70 GPGPDRGYVFQQDALL 85 (220)
T ss_pred cccCcEEEEecccccc
Confidence 2355688899876555
No 122
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.28 E-value=2.5e-12 Score=107.55 Aligned_cols=93 Identities=17% Similarity=0.262 Sum_probs=72.4
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC---C
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL---T 193 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~---~ 193 (244)
+.++++.+.++....+++++ ++.++.++.++|.||||||||||+++|+|++.++.|.+.+++... .
T Consensus 3 l~~~~l~~~~~~~~~~l~~i-----------sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~ 71 (229)
T cd03254 3 IEFENVNFSYDEKKPVLKDI-----------NFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDIS 71 (229)
T ss_pred EEEEEEEEecCCCCccccce-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcC
Confidence 34567776664322477888 888888888999999999999999999999999999999988543 2
Q ss_pred HHHHHHHhhhcCCCCceehhhH-hhhhc
Q psy1371 194 DDRLNHLLSVAPQNSIILLEDI-DAAFV 220 (244)
Q Consensus 194 ~~~~~~~~~~~~q~~~lf~dei-d~~~~ 220 (244)
...+++.+++++|++.++-+++ |++..
T Consensus 72 ~~~~~~~i~~~~q~~~~~~~tv~~~~~~ 99 (229)
T cd03254 72 RKSLRSMIGVVLQDTFLFSGTIMENIRL 99 (229)
T ss_pred HHHHhhhEEEecCCchhhhhHHHHHHhc
Confidence 3456777899999887775566 55544
No 123
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.27 E-value=1.8e-12 Score=107.48 Aligned_cols=83 Identities=13% Similarity=0.219 Sum_probs=67.3
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHH
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDR 196 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~ 196 (244)
+.++++.+.++.+ .+++++ ++.+..++.++|.||||||||||+++|+|.+.++.|.+.+++.......
T Consensus 12 l~~~~l~~~~~~~-~il~~v-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~ 79 (214)
T PRK13543 12 LAAHALAFSRNEE-PVFGPL-----------DFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD 79 (214)
T ss_pred EEEeeEEEecCCc-eeeecc-----------eEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchh
Confidence 5678888877543 477888 8888888889999999999999999999999999999999986554434
Q ss_pred HHHHhhhcCCCCcee
Q psy1371 197 LNHLLSVAPQNSIIL 211 (244)
Q Consensus 197 ~~~~~~~~~q~~~lf 211 (244)
.++.+++++|...++
T Consensus 80 ~~~~i~~~~q~~~~~ 94 (214)
T PRK13543 80 RSRFMAYLGHLPGLK 94 (214)
T ss_pred hhhceEEeecCcccc
Confidence 455678888875544
No 124
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.27 E-value=1.6e-12 Score=108.81 Aligned_cols=82 Identities=20% Similarity=0.308 Sum_probs=64.1
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC---CHH
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL---TDD 195 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~---~~~ 195 (244)
+++|.+.|+. ..+++++ ++.+.+++.++|+||||||||||+++|+|.++++.|++.+++... +..
T Consensus 3 ~~~l~~~~~~-~~~l~~v-----------s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~ 70 (230)
T TIGR03410 3 VSNLNVYYGQ-SHILRGV-----------SLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPH 70 (230)
T ss_pred EEeEEEEeCC-eEEecce-----------eeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHH
Confidence 4566666653 2467888 888888888999999999999999999999999999999988433 222
Q ss_pred -HHHHHhhhcCCCCceeh
Q psy1371 196 -RLNHLLSVAPQNSIILL 212 (244)
Q Consensus 196 -~~~~~~~~~~q~~~lf~ 212 (244)
..++.+++++|+..+|.
T Consensus 71 ~~~~~~i~~~~q~~~~~~ 88 (230)
T TIGR03410 71 ERARAGIAYVPQGREIFP 88 (230)
T ss_pred HHHHhCeEEeccCCcccC
Confidence 23556889998876663
No 125
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.27 E-value=1.7e-12 Score=108.77 Aligned_cols=82 Identities=16% Similarity=0.223 Sum_probs=63.0
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---HH
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT---DD 195 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~---~~ 195 (244)
++++.+.|+. ..+++++ ++.+.+++.++|+||||||||||+++|+|.+.++.|.+.+++.... ..
T Consensus 3 ~~~l~~~~~~-~~~l~~v-----------s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 70 (232)
T cd03218 3 AENLSKRYGK-RKVVNGV-----------SLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMH 70 (232)
T ss_pred EEEEEEEeCC-EEeeccc-----------eeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHh
Confidence 4566666643 2467777 7888888889999999999999999999999999999999885432 22
Q ss_pred H-HHHHhhhcCCCCceeh
Q psy1371 196 R-LNHLLSVAPQNSIILL 212 (244)
Q Consensus 196 ~-~~~~~~~~~q~~~lf~ 212 (244)
. .++.+++++|+..++.
T Consensus 71 ~~~~~~i~~~~q~~~~~~ 88 (232)
T cd03218 71 KRARLGIGYLPQEASIFR 88 (232)
T ss_pred HHHhccEEEecCCccccc
Confidence 2 3456888998766553
No 126
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.27 E-value=1.4e-12 Score=112.89 Aligned_cols=114 Identities=18% Similarity=0.139 Sum_probs=78.8
Q ss_pred CCCccccChhHH----HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC
Q psy1371 118 PLNSVVLDSGVA----DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT 193 (244)
Q Consensus 118 ~~~~v~~~~~~~----~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~ 193 (244)
.++++.+.|+.. ..+++++ ++.++.++.++|+||||||||||+++|+|++.++.|.+.+++...+
T Consensus 3 ~~~~v~~~y~~~~~~~~~~l~~v-----------sl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~ 71 (288)
T PRK13643 3 KFEKVNYTYQPNSPFASRALFDI-----------DLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEeCCCCcccccceeee-----------EEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECc
Confidence 356666666421 2477888 8888888889999999999999999999999999999999985432
Q ss_pred -------HHHHHHHhhhcCCCC--ceehhhH-hhhhccc---CcCcccHHHHHHHHHHhhhc
Q psy1371 194 -------DDRLNHLLSVAPQNS--IILLEDI-DAAFVTR---EESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 194 -------~~~~~~~~~~~~q~~--~lf~dei-d~~~~~r---~~~~~~~~~~~~~~l~~~~~ 242 (244)
...+++.+++++|++ .+|-..+ |++.... +......+....+++.++++
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L 133 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGL 133 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 234677899999875 4553344 4443221 11222334445566666654
No 127
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.27 E-value=2.1e-12 Score=106.22 Aligned_cols=80 Identities=20% Similarity=0.242 Sum_probs=61.0
Q ss_pred CccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---H--
Q psy1371 120 NSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT---D-- 194 (244)
Q Consensus 120 ~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~---~-- 194 (244)
+++.+.|+. ..+++++ ++.++.++.++|.||||+|||||+++|+|.+.++.|.+.+++.... .
T Consensus 2 ~~l~~~~~~-~~~l~~v-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 69 (206)
T TIGR03608 2 KNISKKFGD-KIILDDL-----------NLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKK 69 (206)
T ss_pred cceEEEECC-EEEEece-----------EEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhh
Confidence 344555432 2466777 7788888889999999999999999999999999999999886532 1
Q ss_pred --HHHHHHhhhcCCCCcee
Q psy1371 195 --DRLNHLLSVAPQNSIIL 211 (244)
Q Consensus 195 --~~~~~~~~~~~q~~~lf 211 (244)
...++.+++++|++.++
T Consensus 70 ~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 70 ASKFRREKLGYLFQNFALI 88 (206)
T ss_pred HHHHHHhCeeEEecchhhc
Confidence 13456688888876655
No 128
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.27 E-value=2.4e-12 Score=106.53 Aligned_cols=78 Identities=21% Similarity=0.324 Sum_probs=62.1
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHHHH
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRLN 198 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~~~ 198 (244)
++++.+.|+. ..+++++ ++.+++++.++|+||||||||||+++|+|++.++.|.+.+++.... ..+
T Consensus 2 ~~~l~~~~~~-~~~l~~i-----------sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~--~~~ 67 (213)
T cd03235 2 VEDLTVSYGG-HPVLEDV-----------SFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE--KER 67 (213)
T ss_pred cccceeEECC-EEeeecc-----------eeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH--HHH
Confidence 3556555543 2467777 7888888889999999999999999999999999999999886543 456
Q ss_pred HHhhhcCCCCce
Q psy1371 199 HLLSVAPQNSII 210 (244)
Q Consensus 199 ~~~~~~~q~~~l 210 (244)
+.+++++|+..+
T Consensus 68 ~~i~~v~q~~~~ 79 (213)
T cd03235 68 KRIGYVPQRRSI 79 (213)
T ss_pred hheEEecccccc
Confidence 778999987544
No 129
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.26 E-value=1.8e-12 Score=114.66 Aligned_cols=115 Identities=15% Similarity=0.119 Sum_probs=81.6
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC--H
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT--D 194 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~--~ 194 (244)
+.++++...|+.. .+++++ ++.+++|+-++|+||||+|||||+++|+|++.|+.|.+.++|.+.. .
T Consensus 42 i~i~nl~k~y~~~-~~l~~i-----------s~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~ 109 (340)
T PRK13536 42 IDLAGVSKSYGDK-AVVNGL-----------SFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA 109 (340)
T ss_pred EEEEEEEEEECCE-EEEeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch
Confidence 6678888887643 477888 8888888889999999999999999999999999999999985443 2
Q ss_pred HHHHHHhhhcCCCCcee-----hhhHhhhhcccCcCcccHHHHHHHHHHhhhcC
Q psy1371 195 DRLNHLLSVAPQNSIIL-----LEDIDAAFVTREESSQGLEDIDAAFVTREESS 243 (244)
Q Consensus 195 ~~~~~~~~~~~q~~~lf-----~deid~~~~~r~~~~~~~~~~~~~~l~~~~~~ 243 (244)
...++.+++++|+..++ .|++......++.......+....++.++++.
T Consensus 110 ~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~ 163 (340)
T PRK13536 110 RLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE 163 (340)
T ss_pred HHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc
Confidence 35677899999876554 44444333222222222233344566666653
No 130
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.26 E-value=2.1e-12 Score=106.86 Aligned_cols=80 Identities=18% Similarity=0.211 Sum_probs=63.9
Q ss_pred CCCccccChhHHH---HHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH
Q psy1371 118 PLNSVVLDSGVAD---RILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD 194 (244)
Q Consensus 118 ~~~~v~~~~~~~~---~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~ 194 (244)
+.+|++..|+.++ .++++| ++.+..|+.++|+||||||||||+|+|+|+..++.|.|.++|.....
T Consensus 5 ~v~nl~~~y~~~~~~~~~l~~V-----------S~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~ 73 (252)
T COG1124 5 SVRNLSIVYGGGKFAFHALNNV-----------SLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAP 73 (252)
T ss_pred EEeceEEEecCCcchhhhhcce-----------eEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCc
Confidence 3456666655443 578888 88888888899999999999999999999999999999999954433
Q ss_pred ----HHHHHHhhhcCCCC
Q psy1371 195 ----DRLNHLLSVAPQNS 208 (244)
Q Consensus 195 ----~~~~~~~~~~~q~~ 208 (244)
+..++.+.+++|++
T Consensus 74 ~~~~~~~~~~VQmVFQDp 91 (252)
T COG1124 74 KKRAKAFYRPVQMVFQDP 91 (252)
T ss_pred cccchhhccceeEEecCC
Confidence 24667778888864
No 131
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.26 E-value=1.2e-12 Score=108.17 Aligned_cols=81 Identities=26% Similarity=0.338 Sum_probs=62.6
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH-HHH
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD-DRL 197 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~-~~~ 197 (244)
++++.+.++. ..+++++ ++.+++++.++|.||||+|||||+++|+|.+.++.|.+.+++.+... ...
T Consensus 3 ~~~l~~~~~~-~~~l~~i-----------s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~ 70 (213)
T cd03301 3 LENVTKRFGN-VTALDDL-----------NLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK 70 (213)
T ss_pred EEeeEEEECC-eeeeece-----------EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc
Confidence 4566666654 3467888 88888888899999999999999999999999999999998854322 112
Q ss_pred HHHhhhcCCCCcee
Q psy1371 198 NHLLSVAPQNSIIL 211 (244)
Q Consensus 198 ~~~~~~~~q~~~lf 211 (244)
++.+++++|...++
T Consensus 71 ~~~i~~~~q~~~~~ 84 (213)
T cd03301 71 DRDIAMVFQNYALY 84 (213)
T ss_pred cceEEEEecChhhc
Confidence 34688888876555
No 132
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.26 E-value=3.3e-12 Score=105.65 Aligned_cols=112 Identities=16% Similarity=0.225 Sum_probs=91.9
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHHHH
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRLN 198 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~~~ 198 (244)
+++|+-.++.+ .+++++ ++.+++++-.++.||||+||||+.|+|.+++.++.|.|.++|...+. ..+
T Consensus 5 ie~vtK~Fg~k-~av~~i-----------sf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~-~~~ 71 (300)
T COG4152 5 IEGVTKSFGDK-KAVDNI-----------SFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ-EIK 71 (300)
T ss_pred EecchhccCce-eeecce-----------eeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh-hhh
Confidence 45555555443 356778 88888888899999999999999999999999999999999977654 677
Q ss_pred HHhhhcCCCCcee-----hhhHhhhhcccCcCcccHHHHHHHHHHhhhcC
Q psy1371 199 HLLSVAPQNSIIL-----LEDIDAAFVTREESSQGLEDIDAAFVTREESS 243 (244)
Q Consensus 199 ~~~~~~~q~~~lf-----~deid~~~~~r~~~~~~~~~~~~~~l~~~~~~ 243 (244)
..++|.|++--|+ .|.+-.++.-.+....+...-..++|.|.++.
T Consensus 72 ~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~ 121 (300)
T COG4152 72 NRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIV 121 (300)
T ss_pred hhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcccc
Confidence 8899999765444 78888888888888888888889999998874
No 133
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.26 E-value=1.1e-12 Score=116.19 Aligned_cols=114 Identities=13% Similarity=0.107 Sum_probs=76.6
Q ss_pred CCCccccChh--H-HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC-
Q psy1371 118 PLNSVVLDSG--V-ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT- 193 (244)
Q Consensus 118 ~~~~v~~~~~--~-~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~- 193 (244)
.++++.+.|+ . ...+++++ ++.+++++.++|+||||||||||+++|+|++.|+.|.+.+++.+..
T Consensus 3 ~i~~l~~~y~~~~~~~~il~~v-----------sl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~ 71 (343)
T PRK11153 3 ELKNISKVFPQGGRTIHALNNV-----------SLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTA 71 (343)
T ss_pred EEEeEEEEeCCCCCceEEEEee-----------EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCc
Confidence 3556666664 1 23467777 8888888889999999999999999999999999999999985442
Q ss_pred --HH---HHHHHhhhcCCCCceeh-hhH-hhhhc---ccCcCcccHHHHHHHHHHhhhc
Q psy1371 194 --DD---RLNHLLSVAPQNSIILL-EDI-DAAFV---TREESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 194 --~~---~~~~~~~~~~q~~~lf~-dei-d~~~~---~r~~~~~~~~~~~~~~l~~~~~ 242 (244)
.. .+++.+++++|+..+|. .++ |++.. .++......++....+++++++
T Consensus 72 ~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL 130 (343)
T PRK11153 72 LSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGL 130 (343)
T ss_pred CCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 22 24567899998766653 233 44432 1222222233344566666654
No 134
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.26 E-value=5.7e-12 Score=104.07 Aligned_cols=79 Identities=25% Similarity=0.274 Sum_probs=61.6
Q ss_pred CCccccChhHH-HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---H
Q psy1371 119 LNSVVLDSGVA-DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT---D 194 (244)
Q Consensus 119 ~~~v~~~~~~~-~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~---~ 194 (244)
++++.+.|+.. ..+++++ ++.+++++.++|.||||+|||||+++|+|.+.++.|.+.+++.... .
T Consensus 2 ~~~l~~~~~~~~~~il~~v-----------s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~ 70 (211)
T cd03225 2 LKNLSFSYPDGARPALDDI-----------SLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSL 70 (211)
T ss_pred ceeEEEecCCCCeeeecce-----------EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCH
Confidence 34555555331 2467777 7888888889999999999999999999999999999999885432 3
Q ss_pred HHHHHHhhhcCCCC
Q psy1371 195 DRLNHLLSVAPQNS 208 (244)
Q Consensus 195 ~~~~~~~~~~~q~~ 208 (244)
..+++.+++++|++
T Consensus 71 ~~~~~~i~~~~q~~ 84 (211)
T cd03225 71 KELRRKVGLVFQNP 84 (211)
T ss_pred HHHHhhceEEecCh
Confidence 45677889999875
No 135
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.26 E-value=3.3e-12 Score=108.97 Aligned_cols=102 Identities=16% Similarity=0.169 Sum_probs=81.6
Q ss_pred HHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC---CH---HHHHHHhhhc
Q psy1371 131 RILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL---TD---DRLNHLLSVA 204 (244)
Q Consensus 131 ~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~---~~---~~~~~~~~~~ 204 (244)
.+++++ ++.++.|.-++++|+||+|||||+|++.++-.|+.|.+.++|.+. +. ...|+.++++
T Consensus 20 ~al~~v-----------sL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMI 88 (339)
T COG1135 20 TALDDV-----------SLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMI 88 (339)
T ss_pred eeeccc-----------eEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEE
Confidence 467888 777777777899999999999999999999999999999999433 33 3467889999
Q ss_pred CCCCcee-----hhhHhhhhcccCcCcccHHHHHHHHHHhhhcC
Q psy1371 205 PQNSIIL-----LEDIDAAFVTREESSQGLEDIDAAFVTREESS 243 (244)
Q Consensus 205 ~q~~~lf-----~deid~~~~~r~~~~~~~~~~~~~~l~~~~~~ 243 (244)
+|..-|+ .|++-..+.-.+.+..+.++....+|+.+++.
T Consensus 89 FQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~ 132 (339)
T COG1135 89 FQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLS 132 (339)
T ss_pred eccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCCh
Confidence 9976555 45555555555666778888899999998875
No 136
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.25 E-value=2.8e-12 Score=111.84 Aligned_cols=83 Identities=20% Similarity=0.219 Sum_probs=66.4
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC--H
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT--D 194 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~--~ 194 (244)
+.++++.+.|+. ..+++++ ++.+++|+.++|+||||+|||||+++|+|++.|+.|.+.+++.+.. .
T Consensus 5 i~~~~l~~~~~~-~~~l~~v-----------sl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~ 72 (303)
T TIGR01288 5 IDLVGVSKSYGD-KVVVNDL-----------SFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRA 72 (303)
T ss_pred EEEEeEEEEeCC-eEEEcce-----------eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccH
Confidence 446677777654 3477888 8888888889999999999999999999999999999999885432 2
Q ss_pred HHHHHHhhhcCCCCcee
Q psy1371 195 DRLNHLLSVAPQNSIIL 211 (244)
Q Consensus 195 ~~~~~~~~~~~q~~~lf 211 (244)
...++.+++++|++.++
T Consensus 73 ~~~~~~i~~v~q~~~~~ 89 (303)
T TIGR01288 73 RLARVAIGVVPQFDNLD 89 (303)
T ss_pred HHHhhcEEEEeccccCC
Confidence 34567789999876555
No 137
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=2.4e-12 Score=110.78 Aligned_cols=81 Identities=17% Similarity=0.237 Sum_probs=65.2
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC---C
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL---T 193 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~---~ 193 (244)
++++++.+.|+....+++++ ++.+.+|+.++|+||||||||||+++|+|++.++.|.+.+++... .
T Consensus 5 l~~~~l~~~~~~~~~~l~~i-----------sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~ 73 (274)
T PRK13647 5 IEVEDLHFRYKDGTKALKGL-----------SLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAEN 73 (274)
T ss_pred EEEEEEEEEeCCCCeeeeeE-----------EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCC
Confidence 34677777664223477888 888888888999999999999999999999999999999998544 2
Q ss_pred HHHHHHHhhhcCCCC
Q psy1371 194 DDRLNHLLSVAPQNS 208 (244)
Q Consensus 194 ~~~~~~~~~~~~q~~ 208 (244)
...+++.+++++|++
T Consensus 74 ~~~~~~~i~~v~q~~ 88 (274)
T PRK13647 74 EKWVRSKVGLVFQDP 88 (274)
T ss_pred HHHHHhhEEEEecCh
Confidence 345667799999875
No 138
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.25 E-value=4.3e-12 Score=106.03 Aligned_cols=90 Identities=21% Similarity=0.310 Sum_probs=71.2
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC---C
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL---T 193 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~---~ 193 (244)
+.++++.+.++. ..+++++ ++.+++++.++|+||||||||||+++|+|++.++.|.+.+++... +
T Consensus 8 i~~~~l~~~~~~-~~il~~v-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~ 75 (225)
T PRK10247 8 LQLQNVGYLAGD-AKILNNI-----------SFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLK 75 (225)
T ss_pred EEEeccEEeeCC-ceeeecc-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCC
Confidence 567788877754 3477888 888888888999999999999999999999999999999988443 2
Q ss_pred HHHHHHHhhhcCCCCceehhhH-hhh
Q psy1371 194 DDRLNHLLSVAPQNSIILLEDI-DAA 218 (244)
Q Consensus 194 ~~~~~~~~~~~~q~~~lf~dei-d~~ 218 (244)
...+++.+++++|++.+|-..+ |++
T Consensus 76 ~~~~~~~i~~~~q~~~l~~~tv~enl 101 (225)
T PRK10247 76 PEIYRQQVSYCAQTPTLFGDTVYDNL 101 (225)
T ss_pred HHHHHhccEEEecccccccccHHHHH
Confidence 3446677889999877664444 444
No 139
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=3.1e-12 Score=109.82 Aligned_cols=116 Identities=14% Similarity=0.165 Sum_probs=79.6
Q ss_pred CCCCCccccChh-HHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC-
Q psy1371 116 RRPLNSVVLDSG-VADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT- 193 (244)
Q Consensus 116 ~~~~~~v~~~~~-~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~- 193 (244)
.+.++++.+.|+ ....+++++ ++.++.++.++|.||||+|||||+++|+|++.++.|.+.+++....
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~i-----------sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~ 75 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNV-----------SFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISK 75 (271)
T ss_pred EEEEEeEEEEcCCCCccceeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCc
Confidence 356788888774 223577888 8888888889999999999999999999999999999999985543
Q ss_pred --HHHHHHHhhhcCCCC--ceehhhH-hhhhcc---cCcCcccHHHHHHHHHHhhhc
Q psy1371 194 --DDRLNHLLSVAPQNS--IILLEDI-DAAFVT---REESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 194 --~~~~~~~~~~~~q~~--~lf~dei-d~~~~~---r~~~~~~~~~~~~~~l~~~~~ 242 (244)
...+++.+++++|++ .++-.++ |++... ........++...++++++++
T Consensus 76 ~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l 132 (271)
T PRK13632 76 ENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGM 132 (271)
T ss_pred CCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 235677789999875 2322233 444321 111122233445666666654
No 140
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.25 E-value=2.2e-12 Score=108.45 Aligned_cols=81 Identities=20% Similarity=0.209 Sum_probs=61.6
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH--HH
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD--DR 196 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~--~~ 196 (244)
++++.+.|+. ..+++++ ++.+.+++.++|.||||||||||+++|+|.++++.|.+.+++..... ..
T Consensus 4 ~~~l~~~~~~-~~~l~~v-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~ 71 (236)
T TIGR03864 4 VAGLSFAYGA-RRALDDV-----------SFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRA 71 (236)
T ss_pred EEeeEEEECC-EEEEeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChh
Confidence 4555555542 2366777 78888888899999999999999999999999999999998854321 22
Q ss_pred HHHHhhhcCCCCcee
Q psy1371 197 LNHLLSVAPQNSIIL 211 (244)
Q Consensus 197 ~~~~~~~~~q~~~lf 211 (244)
.++.+++++|+..++
T Consensus 72 ~~~~i~~~~q~~~~~ 86 (236)
T TIGR03864 72 ALARLGVVFQQPTLD 86 (236)
T ss_pred hhhhEEEeCCCCCCc
Confidence 335688999876553
No 141
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.25 E-value=2.1e-12 Score=107.43 Aligned_cols=82 Identities=18% Similarity=0.184 Sum_probs=62.2
Q ss_pred CCccccChhHH---HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC--
Q psy1371 119 LNSVVLDSGVA---DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT-- 193 (244)
Q Consensus 119 ~~~v~~~~~~~---~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~-- 193 (244)
++++.+.|+.. ..+++++ ++.+++++.++|+||||||||||+++|+|.+.++.|.+.+++.+..
T Consensus 4 ~~~v~~~~~~~~~~~~~l~~i-----------sl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~ 72 (221)
T TIGR02211 4 CENLGKRYQEGKLDTRVLKGV-----------SLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKL 72 (221)
T ss_pred EEeeeEEccCCCcceEeEeee-----------EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhc
Confidence 45566655321 2467777 7888888889999999999999999999999999999999885432
Q ss_pred -HHH---HH-HHhhhcCCCCcee
Q psy1371 194 -DDR---LN-HLLSVAPQNSIIL 211 (244)
Q Consensus 194 -~~~---~~-~~~~~~~q~~~lf 211 (244)
... ++ +.+++++|++.++
T Consensus 73 ~~~~~~~~~~~~i~~v~q~~~~~ 95 (221)
T TIGR02211 73 SSNERAKLRNKKLGFIYQFHHLL 95 (221)
T ss_pred CHhHHHHHHHhcEEEEecccccC
Confidence 211 23 5688999886555
No 142
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=1.9e-12 Score=112.03 Aligned_cols=114 Identities=11% Similarity=0.169 Sum_probs=79.7
Q ss_pred CCCccccChhHH----HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC
Q psy1371 118 PLNSVVLDSGVA----DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT 193 (244)
Q Consensus 118 ~~~~v~~~~~~~----~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~ 193 (244)
.++++.+.|+.. ..+++++ ++.+..|+.++|+||||||||||+++|+|.+.++.|.+.+++....
T Consensus 4 ~~~~l~~~y~~~~~~~~~~l~~v-----------sl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~ 72 (286)
T PRK13646 4 RFDNVSYTYQKGTPYEHQAIHDV-----------NTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITIT 72 (286)
T ss_pred EEEEEEEEECCCCccccCceeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECc
Confidence 355666665321 2478888 8888888889999999999999999999999999999999985442
Q ss_pred -------HHHHHHHhhhcCCCC--ceehhhH-hhhhccc---CcCcccHHHHHHHHHHhhhc
Q psy1371 194 -------DDRLNHLLSVAPQNS--IILLEDI-DAAFVTR---EESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 194 -------~~~~~~~~~~~~q~~--~lf~dei-d~~~~~r---~~~~~~~~~~~~~~l~~~~~ 242 (244)
...+++.+++++|++ .+|..++ |++.... +.......+...+++.++++
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL 134 (286)
T PRK13646 73 HKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGF 134 (286)
T ss_pred cccccchHHHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 235677899999975 4554455 5554321 11222333445667777765
No 143
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.24 E-value=2e-12 Score=108.90 Aligned_cols=81 Identities=19% Similarity=0.257 Sum_probs=64.1
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC-----
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT----- 193 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~----- 193 (244)
++++.+.|+. ..+++++ ++.+.+++.++|.||||+|||||+++|+|.+.++.|.+.+++....
T Consensus 4 ~~~l~~~~~~-~~il~~~-----------s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~ 71 (240)
T PRK09493 4 FKNVSKHFGP-TQVLHNI-----------DLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVD 71 (240)
T ss_pred EEeEEEEECC-eEEeeee-----------eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChh
Confidence 4566666543 2467788 8888888889999999999999999999999999999999985443
Q ss_pred HHHHHHHhhhcCCCCcee
Q psy1371 194 DDRLNHLLSVAPQNSIIL 211 (244)
Q Consensus 194 ~~~~~~~~~~~~q~~~lf 211 (244)
...+++.+++++|+..++
T Consensus 72 ~~~~~~~i~~~~q~~~~~ 89 (240)
T PRK09493 72 ERLIRQEAGMVFQQFYLF 89 (240)
T ss_pred HHHHhhceEEEecccccC
Confidence 134567789999876555
No 144
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.24 E-value=2.4e-12 Score=111.20 Aligned_cols=115 Identities=12% Similarity=0.118 Sum_probs=79.9
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT--- 193 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~--- 193 (244)
+.++++.+.|+....+++++ ++.+..|+.++|+||||+|||||+++|+|.++++.|.+.+++.+..
T Consensus 6 l~~~~l~~~~~~~~~~l~~v-----------s~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~ 74 (283)
T PRK13636 6 LKVEELNYNYSDGTHALKGI-----------NINIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSR 74 (283)
T ss_pred EEEEeEEEEeCCCCeeeeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCc
Confidence 45778888774223477888 8888888889999999999999999999999999999999985442
Q ss_pred --HHHHHHHhhhcCCCC--ceehhhH-hhhhcc---cCcCcccHHHHHHHHHHhhhc
Q psy1371 194 --DDRLNHLLSVAPQNS--IILLEDI-DAAFVT---REESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 194 --~~~~~~~~~~~~q~~--~lf~dei-d~~~~~---r~~~~~~~~~~~~~~l~~~~~ 242 (244)
...+++.+++++|++ .++-.++ |++... .+.......+....+++++++
T Consensus 75 ~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL 131 (283)
T PRK13636 75 KGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGI 131 (283)
T ss_pred chHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 235677899999875 3443344 444322 111222233445566666654
No 145
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.24 E-value=1.4e-12 Score=109.40 Aligned_cols=115 Identities=11% Similarity=0.109 Sum_probs=77.0
Q ss_pred CCCCccccChhHH---HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC
Q psy1371 117 RPLNSVVLDSGVA---DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT 193 (244)
Q Consensus 117 ~~~~~v~~~~~~~---~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~ 193 (244)
+.++++.+.|+.. ..+++++ ++.+++++.++|.||||||||||+++|+|++.++.|.+.+++.+..
T Consensus 6 l~~~~l~~~~~~~~~~~~il~~i-----------sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~ 74 (233)
T PRK11629 6 LQCDNLCKRYQEGSVQTDVLHNV-----------SFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMS 74 (233)
T ss_pred EEEEeEEEEcCCCCcceeeEEee-----------EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcC
Confidence 4567777776421 2467888 8888888889999999999999999999999999999999985443
Q ss_pred ---HHH---HH-HHhhhcCCCCceehh-hH-hhhhc---ccCcCcccHHHHHHHHHHhhhc
Q psy1371 194 ---DDR---LN-HLLSVAPQNSIILLE-DI-DAAFV---TREESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 194 ---~~~---~~-~~~~~~~q~~~lf~d-ei-d~~~~---~r~~~~~~~~~~~~~~l~~~~~ 242 (244)
... ++ +.+++++|++.+|.+ .+ |++.. .+.......++....+++++++
T Consensus 75 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl 135 (233)
T PRK11629 75 KLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGL 135 (233)
T ss_pred cCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 222 22 458899998765532 33 44432 1111122233344566666655
No 146
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.24 E-value=1.8e-12 Score=113.83 Aligned_cols=116 Identities=12% Similarity=0.144 Sum_probs=83.1
Q ss_pred CCCCCccccChhHH----HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCC
Q psy1371 116 RRPLNSVVLDSGVA----DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERG 191 (244)
Q Consensus 116 ~~~~~~v~~~~~~~----~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~ 191 (244)
.+.++++.+.|+.. ..+++++ ++.+++|+.++|+||||||||||+++|+|++.++.|.|.+++..
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~v-----------sl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~ 89 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNI-----------SYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIY 89 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEE
Confidence 36789999887532 2478888 88888888899999999999999999999999999999998743
Q ss_pred CC-------------------HHHHHHHhhhcCCCC--ceehhhH-hhhhccc---CcCcccHHHHHHHHHHhhhc
Q psy1371 192 LT-------------------DDRLNHLLSVAPQNS--IILLEDI-DAAFVTR---EESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 192 ~~-------------------~~~~~~~~~~~~q~~--~lf~dei-d~~~~~r---~~~~~~~~~~~~~~l~~~~~ 242 (244)
.. ...+++.+++++|++ .+|-+++ |++.... +.......+....++.++++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL 165 (320)
T PRK13631 90 IGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGL 165 (320)
T ss_pred cccccccccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 21 235677899999875 4665565 5554321 11222233344566777665
No 147
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.24 E-value=2.2e-12 Score=111.66 Aligned_cols=113 Identities=17% Similarity=0.127 Sum_probs=77.6
Q ss_pred CCccccChhHH----HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH
Q psy1371 119 LNSVVLDSGVA----DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD 194 (244)
Q Consensus 119 ~~~v~~~~~~~----~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~ 194 (244)
+++|.+.|+.. ..+++++ ++.+.+|+.++|+||||||||||+++|+|++.++.|.+.+++.....
T Consensus 5 ~~~l~~~y~~~~~~~~~~l~~v-----------s~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 73 (287)
T PRK13637 5 IENLTHIYMEGTPFEKKALDNV-----------NIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITD 73 (287)
T ss_pred EEEEEEECCCCCccccceeeee-----------EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCC
Confidence 45666665321 2477888 88888888899999999999999999999999999999999854432
Q ss_pred -----HHHHHHhhhcCCCC--ceehhhH-hhhhccc---CcCcccHHHHHHHHHHhhhc
Q psy1371 195 -----DRLNHLLSVAPQNS--IILLEDI-DAAFVTR---EESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 195 -----~~~~~~~~~~~q~~--~lf~dei-d~~~~~r---~~~~~~~~~~~~~~l~~~~~ 242 (244)
..+++.+++++|++ .+|-.++ |++.... +.......+...+++.++++
T Consensus 74 ~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL 132 (287)
T PRK13637 74 KKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGL 132 (287)
T ss_pred cCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCC
Confidence 35677889999875 3443344 4443221 11222333445566777665
No 148
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.24 E-value=2.2e-12 Score=112.54 Aligned_cols=114 Identities=14% Similarity=0.109 Sum_probs=77.6
Q ss_pred CCCccccChhHH----HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC-
Q psy1371 118 PLNSVVLDSGVA----DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL- 192 (244)
Q Consensus 118 ~~~~v~~~~~~~----~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~- 192 (244)
.++++.+.|+.. ..+++++ ++.+..++.++|+||||||||||+++|+|++.++.|.+.+++.+.
T Consensus 4 ~~~~l~~~y~~~~~~~~~~l~~v-----------sl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~ 72 (305)
T PRK13651 4 KVKNIVKIFNKKLPTELKALDNV-----------SVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEECCCCCccccceeee-----------EEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecc
Confidence 355666666422 1367888 788888888999999999999999999999999999999876322
Q ss_pred --------------------------CHHHHHHHhhhcCCCC--ceehhhH-hhhhccc---CcCcccHHHHHHHHHHhh
Q psy1371 193 --------------------------TDDRLNHLLSVAPQNS--IILLEDI-DAAFVTR---EESSQGLEDIDAAFVTRE 240 (244)
Q Consensus 193 --------------------------~~~~~~~~~~~~~q~~--~lf~dei-d~~~~~r---~~~~~~~~~~~~~~l~~~ 240 (244)
....+++.+++++|++ .++..++ |++.... +...+...+....++.++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELV 152 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHc
Confidence 1234677789999863 4554455 5554321 222223334456667776
Q ss_pred hc
Q psy1371 241 ES 242 (244)
Q Consensus 241 ~~ 242 (244)
++
T Consensus 153 gL 154 (305)
T PRK13651 153 GL 154 (305)
T ss_pred CC
Confidence 65
No 149
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=3.4e-12 Score=110.03 Aligned_cols=90 Identities=18% Similarity=0.180 Sum_probs=67.1
Q ss_pred CCCccccChhHH----HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC
Q psy1371 118 PLNSVVLDSGVA----DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT 193 (244)
Q Consensus 118 ~~~~v~~~~~~~----~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~ 193 (244)
.++++.+.|+.. ..+++++ ++.+++++.++|.||||||||||+++|+|.+.++.|.+.+++....
T Consensus 4 ~~~~l~~~~~~~~~~~~~~l~~i-----------s~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~ 72 (280)
T PRK13649 4 NLQNVSYTYQAGTPFEGRALFDV-----------NLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLIT 72 (280)
T ss_pred EEEEEEEEcCCCCccccceeeee-----------EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence 355666666421 2467788 8888888889999999999999999999999999999999885432
Q ss_pred -------HHHHHHHhhhcCCCC--ceehhhH-hhh
Q psy1371 194 -------DDRLNHLLSVAPQNS--IILLEDI-DAA 218 (244)
Q Consensus 194 -------~~~~~~~~~~~~q~~--~lf~dei-d~~ 218 (244)
...+++.+++++|++ .++..++ |++
T Consensus 73 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l 107 (280)
T PRK13649 73 STSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDV 107 (280)
T ss_pred ccccccCHHHHHhheEEEeeChhhhhccccHHHHH
Confidence 234667789999875 3443344 444
No 150
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=2.9e-12 Score=111.06 Aligned_cols=114 Identities=18% Similarity=0.198 Sum_probs=78.9
Q ss_pred CCCccccChhH----HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC
Q psy1371 118 PLNSVVLDSGV----ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT 193 (244)
Q Consensus 118 ~~~~v~~~~~~----~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~ 193 (244)
+++++.+.|+. ...+++++ ++.+.+|+.++|+||||||||||+++|+|++.++.|.+.+++....
T Consensus 4 ~~~~l~~~y~~~~~~~~~~L~~v-----------sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~ 72 (290)
T PRK13634 4 TFQKVEHRYQYKTPFERRALYDV-----------NVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEECCCCcccccceeeE-----------EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECc
Confidence 35566666542 13477888 8888888889999999999999999999999999999999985442
Q ss_pred -------HHHHHHHhhhcCCCC--ceehhhH-hhhhccc---CcCcccHHHHHHHHHHhhhc
Q psy1371 194 -------DDRLNHLLSVAPQNS--IILLEDI-DAAFVTR---EESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 194 -------~~~~~~~~~~~~q~~--~lf~dei-d~~~~~r---~~~~~~~~~~~~~~l~~~~~ 242 (244)
...+++.+++++|++ .++-.++ |++.... +.......+....+++++++
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL 134 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGL 134 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 234667789999975 4543344 5544221 11222233445667777765
No 151
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.23 E-value=1.3e-11 Score=107.68 Aligned_cols=95 Identities=14% Similarity=0.142 Sum_probs=66.7
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC--HHHHHHHhhhcCCCCcee-----hhhHhhhhc
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT--DDRLNHLLSVAPQNSIIL-----LEDIDAAFV 220 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~--~~~~~~~~~~~~q~~~lf-----~deid~~~~ 220 (244)
++.+++|+.++|+||||||||||+++|+|++.|+.|.+.+++.+.. ...+++.+++++|+..++ .|++...+.
T Consensus 13 s~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 92 (302)
T TIGR01188 13 NFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGR 92 (302)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHH
Confidence 7778888889999999999999999999999999999999885442 245677899999986665 233332222
Q ss_pred ccCcCcccHHHHHHHHHHhhhc
Q psy1371 221 TREESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 221 ~r~~~~~~~~~~~~~~l~~~~~ 242 (244)
.++......++....++.++++
T Consensus 93 ~~~~~~~~~~~~~~~~l~~~~l 114 (302)
T TIGR01188 93 LYGLPKDEAEERAEELLELFEL 114 (302)
T ss_pred HcCCCHHHHHHHHHHHHHHcCC
Confidence 2222222233344566676665
No 152
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=3.9e-12 Score=109.68 Aligned_cols=115 Identities=14% Similarity=0.100 Sum_probs=78.6
Q ss_pred CCCCccccChhH--HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC-
Q psy1371 117 RPLNSVVLDSGV--ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT- 193 (244)
Q Consensus 117 ~~~~~v~~~~~~--~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~- 193 (244)
+.++++.+.|+. ...+++++ ++.+.+|+.++|+||||||||||+++|+|++.|+.|.+.+++....
T Consensus 5 l~~~~l~~~~~~~~~~~~l~~v-----------sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~ 73 (279)
T PRK13650 5 IEVKNLTFKYKEDQEKYTLNDV-----------SFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTE 73 (279)
T ss_pred EEEEeEEEEcCCCCcCeeeeee-----------EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCc
Confidence 446677777642 12367888 8888888889999999999999999999999999999999985543
Q ss_pred --HHHHHHHhhhcCCCC--ceehhhH-hhhhccc---CcCcccHHHHHHHHHHhhhc
Q psy1371 194 --DDRLNHLLSVAPQNS--IILLEDI-DAAFVTR---EESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 194 --~~~~~~~~~~~~q~~--~lf~dei-d~~~~~r---~~~~~~~~~~~~~~l~~~~~ 242 (244)
...+++.+++++|++ .++-.++ |++.... +......++....+++++++
T Consensus 74 ~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL 130 (279)
T PRK13650 74 ENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGM 130 (279)
T ss_pred CcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCC
Confidence 345677899999875 2332243 4443221 11222223344566666655
No 153
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.23 E-value=2.8e-12 Score=111.76 Aligned_cols=113 Identities=14% Similarity=0.147 Sum_probs=76.9
Q ss_pred CCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC--HH
Q psy1371 118 PLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT--DD 195 (244)
Q Consensus 118 ~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~--~~ 195 (244)
.++++.+.|+. ..+++++ ++.+++|+-++|.||||+|||||+++|+|++.++.|.+.+++.... ..
T Consensus 4 ~~~~l~~~~~~-~~~l~~i-----------s~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~ 71 (301)
T TIGR03522 4 RVSSLTKLYGT-QNALDEV-----------SFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPK 71 (301)
T ss_pred EEEEEEEEECC-EEEEEEe-----------EEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChH
Confidence 34566665543 2366777 7788888889999999999999999999999999999999885443 24
Q ss_pred HHHHHhhhcCCCCceehh-hH-hhhh---cccCcCcccHHHHHHHHHHhhhc
Q psy1371 196 RLNHLLSVAPQNSIILLE-DI-DAAF---VTREESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 196 ~~~~~~~~~~q~~~lf~d-ei-d~~~---~~r~~~~~~~~~~~~~~l~~~~~ 242 (244)
.+++.+++++|.+.++.+ .+ |++. ..++.......+....+++++++
T Consensus 72 ~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl 123 (301)
T TIGR03522 72 EVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGL 123 (301)
T ss_pred HHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 567789999997666532 23 4443 22221222223334556666654
No 154
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.23 E-value=3e-12 Score=106.92 Aligned_cols=83 Identities=22% Similarity=0.345 Sum_probs=68.6
Q ss_pred CCCccccChhHH---HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC---CCeEEEEeCCCC
Q psy1371 118 PLNSVVLDSGVA---DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE---FGICVLNLSERG 191 (244)
Q Consensus 118 ~~~~v~~~~~~~---~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~---~~~g~i~~~~~~ 191 (244)
.|++|.+.+... ..+++++ ++.+.+++.++|+||||||||||+++|+|++. ++.|.+.+++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~l~~v-----------sl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~ 73 (226)
T cd03234 5 PWWDVGLKAKNWNKYARILNDV-----------SLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQP 73 (226)
T ss_pred eeecceeeeecCccccccccCc-----------eEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEE
Confidence 477788877543 4678888 88888888899999999999999999999998 899999999866
Q ss_pred CCHHHHHHHhhhcCCCCcee
Q psy1371 192 LTDDRLNHLLSVAPQNSIIL 211 (244)
Q Consensus 192 ~~~~~~~~~~~~~~q~~~lf 211 (244)
.....+++.+++++|+..+|
T Consensus 74 ~~~~~~~~~i~~~~q~~~~~ 93 (226)
T cd03234 74 RKPDQFQKCVAYVRQDDILL 93 (226)
T ss_pred CChHHhcccEEEeCCCCccC
Confidence 55555677789999876665
No 155
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=1.4e-12 Score=116.87 Aligned_cols=115 Identities=13% Similarity=0.144 Sum_probs=82.2
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH-H
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD-D 195 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~-~ 195 (244)
+.++++...++. ..+++++ ++.++.++-++|.||||||||||+++|+|+..++.|.+.+++...+. .
T Consensus 20 l~l~~v~~~~~~-~~~l~~v-----------sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~ 87 (377)
T PRK11607 20 LEIRNLTKSFDG-QHAVDDV-----------SLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVP 87 (377)
T ss_pred EEEEeEEEEECC-EEEEeee-----------EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC
Confidence 667888877753 2456777 78888888899999999999999999999999999999999854432 2
Q ss_pred HHHHHhhhcCCCCceehh-hH-hhhhcc---cCcCcccHHHHHHHHHHhhhcC
Q psy1371 196 RLNHLLSVAPQNSIILLE-DI-DAAFVT---REESSQGLEDIDAAFVTREESS 243 (244)
Q Consensus 196 ~~~~~~~~~~q~~~lf~d-ei-d~~~~~---r~~~~~~~~~~~~~~l~~~~~~ 243 (244)
..++.+++++|+..+|.. ++ |+++.. +.......++....+++.+++.
T Consensus 88 ~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~ 140 (377)
T PRK11607 88 PYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQ 140 (377)
T ss_pred HHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc
Confidence 345678999998877732 33 555432 2222333344556677766653
No 156
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.23 E-value=4.8e-12 Score=107.21 Aligned_cols=114 Identities=11% Similarity=0.149 Sum_probs=77.4
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT--- 193 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~--- 193 (244)
+.++++.+.|+. ..+++++ ++.+++|+.++|+||||+|||||+++|+|.+.++.|.+.+++....
T Consensus 4 l~~~~l~~~~~~-~~~l~~v-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~ 71 (250)
T PRK11264 4 IEVKNLVKKFHG-QTVLHGI-----------DLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTAR 71 (250)
T ss_pred EEEeceEEEECC-eeeeccc-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccc
Confidence 346677777653 3477888 8888888889999999999999999999999999999999885432
Q ss_pred --------HHHHHHHhhhcCCCCceeh-hhH-hhhhc----ccCcCcccHHHHHHHHHHhhhc
Q psy1371 194 --------DDRLNHLLSVAPQNSIILL-EDI-DAAFV----TREESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 194 --------~~~~~~~~~~~~q~~~lf~-dei-d~~~~----~r~~~~~~~~~~~~~~l~~~~~ 242 (244)
...+++.+++++|++.++. .++ |++.. .+.......++....++.++++
T Consensus 72 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl 134 (250)
T PRK11264 72 SLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGL 134 (250)
T ss_pred cccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 1245667889998765552 233 44432 1111222223344556666654
No 157
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.23 E-value=1.8e-12 Score=116.00 Aligned_cols=115 Identities=14% Similarity=0.175 Sum_probs=80.9
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH-
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD- 194 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~- 194 (244)
.+.++++.+.|+. ..+++++ ++.++.++-++|+||||||||||+++|+|+..++.|.+.+++.....
T Consensus 14 ~L~l~~l~~~~~~-~~~l~~v-----------sl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~ 81 (375)
T PRK09452 14 LVELRGISKSFDG-KEVISNL-----------DLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHV 81 (375)
T ss_pred eEEEEEEEEEECC-eEEEeee-----------EEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCC
Confidence 3667888888764 3466777 77888888899999999999999999999999999999999865432
Q ss_pred HHHHHHhhhcCCCCceehh-hH-hhhhcc---cCcCcccHHHHHHHHHHhhhc
Q psy1371 195 DRLNHLLSVAPQNSIILLE-DI-DAAFVT---REESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 195 ~~~~~~~~~~~q~~~lf~d-ei-d~~~~~---r~~~~~~~~~~~~~~l~~~~~ 242 (244)
...++.+++++|+..+|.. ++ |+++.. ++......++....+++.+++
T Consensus 82 ~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l 134 (375)
T PRK09452 82 PAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQL 134 (375)
T ss_pred CHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCC
Confidence 1234678999998877732 33 555432 222222333444556666654
No 158
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.23 E-value=3e-12 Score=106.49 Aligned_cols=89 Identities=18% Similarity=0.302 Sum_probs=66.4
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---HH
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT---DD 195 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~---~~ 195 (244)
++++.+.|+.. .+++++ ++.+.+++.++|+||||||||||+++|+|++.++.|.+.+++.... ..
T Consensus 3 ~~~l~~~~~~~-~~l~~v-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~ 70 (222)
T cd03224 3 VENLNAGYGKS-QILFGV-----------SLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPH 70 (222)
T ss_pred EeeEEeecCCe-eEeeee-----------eEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHH
Confidence 45666665432 466777 7888888889999999999999999999999999999999885432 22
Q ss_pred H-HHHHhhhcCCCCceehh-hH-hhhh
Q psy1371 196 R-LNHLLSVAPQNSIILLE-DI-DAAF 219 (244)
Q Consensus 196 ~-~~~~~~~~~q~~~lf~d-ei-d~~~ 219 (244)
. .++.+++++|+..++.+ ++ |++.
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~t~~~~l~ 97 (222)
T cd03224 71 ERARAGIGYVPEGRRIFPELTVEENLL 97 (222)
T ss_pred HHHhcCeEEeccccccCCCCcHHHHHH
Confidence 2 34568899988766643 44 4443
No 159
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.23 E-value=5.7e-12 Score=103.89 Aligned_cols=81 Identities=16% Similarity=0.225 Sum_probs=63.8
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH-HHH
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD-DRL 197 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~-~~~ 197 (244)
++++.+.|+. ..+++++ ++.+++++.++|.||||+|||||+++|+|+.+++.|.+.+++..... ...
T Consensus 3 ~~~l~~~~~~-~~~l~~~-----------~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~ 70 (208)
T cd03268 3 TNDLTKTYGK-KRVLDDI-----------SLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEA 70 (208)
T ss_pred EEEEEEEECC-eEeEeee-----------EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHH
Confidence 4566666543 3467777 78888888899999999999999999999999999999999865432 345
Q ss_pred HHHhhhcCCCCcee
Q psy1371 198 NHLLSVAPQNSIIL 211 (244)
Q Consensus 198 ~~~~~~~~q~~~lf 211 (244)
++.+++++|+..++
T Consensus 71 ~~~i~~~~q~~~~~ 84 (208)
T cd03268 71 LRRIGALIEAPGFY 84 (208)
T ss_pred HhhEEEecCCCccC
Confidence 66788999876554
No 160
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.23 E-value=3.7e-12 Score=106.99 Aligned_cols=81 Identities=16% Similarity=0.136 Sum_probs=62.1
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---HH
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT---DD 195 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~---~~ 195 (244)
++++.+.|+. ..+++++ ++.+.+++.++|+||||||||||+++|+|+++++.|.+.+++.... ..
T Consensus 3 ~~~l~~~~~~-~~~l~~v-----------sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~ 70 (236)
T cd03219 3 VRGLTKRFGG-LVALDDV-----------SFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPH 70 (236)
T ss_pred eeeeEEEECC-EEEecCc-----------eEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHH
Confidence 4566666643 2467777 7888888889999999999999999999999999999999885432 22
Q ss_pred H-HHHHhhhcCCCCcee
Q psy1371 196 R-LNHLLSVAPQNSIIL 211 (244)
Q Consensus 196 ~-~~~~~~~~~q~~~lf 211 (244)
. .+..+++++|+..++
T Consensus 71 ~~~~~~i~~v~q~~~l~ 87 (236)
T cd03219 71 EIARLGIGRTFQIPRLF 87 (236)
T ss_pred HHHhcCEEEEecccccc
Confidence 2 234578889876555
No 161
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=5e-12 Score=106.65 Aligned_cols=82 Identities=24% Similarity=0.248 Sum_probs=65.2
Q ss_pred CCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC----
Q psy1371 118 PLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT---- 193 (244)
Q Consensus 118 ~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~---- 193 (244)
.++++.+.|+. ..+++++ ++.+.+++.++|.||||||||||+++|+|.+.++.|.+.+++....
T Consensus 4 ~~~~l~~~~~~-~~il~~v-----------sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~ 71 (242)
T PRK11124 4 QLNGINCFYGA-HQALFDI-----------TLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKT 71 (242)
T ss_pred EEEeeEEEECC-eeeEeee-----------eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccc
Confidence 35667766654 3477888 7888888889999999999999999999999999999999885431
Q ss_pred -----HHHHHHHhhhcCCCCcee
Q psy1371 194 -----DDRLNHLLSVAPQNSIIL 211 (244)
Q Consensus 194 -----~~~~~~~~~~~~q~~~lf 211 (244)
...+++.+++++|++.+|
T Consensus 72 ~~~~~~~~~~~~i~~~~q~~~~~ 94 (242)
T PRK11124 72 PSDKAIRELRRNVGMVFQQYNLW 94 (242)
T ss_pred cchhhHHHHHhheEEEecCcccc
Confidence 134566789999987665
No 162
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.22 E-value=1.7e-12 Score=115.66 Aligned_cols=115 Identities=18% Similarity=0.265 Sum_probs=80.0
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCe--EEEEeCCCCCCH
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGI--CVLNLSERGLTD 194 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~--g~i~~~~~~~~~ 194 (244)
+.++++...|+. ..+++++ ++.++.++-++|+||||||||||+++|+|+..++. |.+.+++...+.
T Consensus 6 l~~~~l~~~~~~-~~~l~~v-----------sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~ 73 (362)
T TIGR03258 6 IRIDHLRVAYGA-NTVLDDL-----------SLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTH 73 (362)
T ss_pred EEEEEEEEEECC-eEEEeee-----------EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCC
Confidence 446677766654 2467777 77888888899999999999999999999999999 999999854432
Q ss_pred -HHHHHHhhhcCCCCceehh-hH-hhhhc---ccCcCcccHHHHHHHHHHhhhcC
Q psy1371 195 -DRLNHLLSVAPQNSIILLE-DI-DAAFV---TREESSQGLEDIDAAFVTREESS 243 (244)
Q Consensus 195 -~~~~~~~~~~~q~~~lf~d-ei-d~~~~---~r~~~~~~~~~~~~~~l~~~~~~ 243 (244)
...++.+++++|+..+|.. ++ +++.. .+.......++...++++++++.
T Consensus 74 ~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~ 128 (362)
T TIGR03258 74 APPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLG 128 (362)
T ss_pred CCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 1235668999998777722 33 44432 22222233444556677777654
No 163
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.22 E-value=8.7e-12 Score=101.38 Aligned_cols=61 Identities=18% Similarity=0.151 Sum_probs=51.3
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC-----HHHHHHHhhhcCCCC
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT-----DDRLNHLLSVAPQNS 208 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~-----~~~~~~~~~~~~q~~ 208 (244)
++.+..++.++|.||||||||||+++|+|.+.++.|.+.+++.+.. ...+++.+++++|++
T Consensus 12 sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 77 (190)
T TIGR01166 12 NFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDP 77 (190)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecCh
Confidence 7778888889999999999999999999999999999999885432 124566788999875
No 164
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.22 E-value=6.2e-12 Score=106.46 Aligned_cols=88 Identities=22% Similarity=0.284 Sum_probs=67.1
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCC-----eEEEEeCCCCCC
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFG-----ICVLNLSERGLT 193 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~-----~g~i~~~~~~~~ 193 (244)
++++.+.|+. ..+++++ ++.++.++.++|+||||||||||+++|+|.+.|+ .|.+.+++....
T Consensus 4 ~~~l~~~~~~-~~~l~~v-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~ 71 (247)
T TIGR00972 4 IENLNLFYGE-KEALKNI-----------NLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIY 71 (247)
T ss_pred EEEEEEEECC-eeeecce-----------eEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEcc
Confidence 5566666643 2467888 8888888889999999999999999999999987 999999885443
Q ss_pred -----HHHHHHHhhhcCCCCceehhhH-hhh
Q psy1371 194 -----DDRLNHLLSVAPQNSIILLEDI-DAA 218 (244)
Q Consensus 194 -----~~~~~~~~~~~~q~~~lf~dei-d~~ 218 (244)
...+++.+++++|++.+|...+ |++
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~e~l 102 (247)
T TIGR00972 72 DKKIDVVELRRRVGMVFQKPNPFPMSIYDNI 102 (247)
T ss_pred ccccchHHHHhheEEEecCcccCCCCHHHHH
Confidence 2345678999998865553333 444
No 165
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.22 E-value=1.7e-12 Score=116.17 Aligned_cols=114 Identities=18% Similarity=0.203 Sum_probs=77.6
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH-H
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD-D 195 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~-~ 195 (244)
+.++++.+.|+. ..+++++ ++.++.++.++|+||||||||||+++|+|++.++.|.+.+++..... .
T Consensus 4 l~i~~l~~~~~~-~~vl~~v-----------sl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~ 71 (369)
T PRK11000 4 VTLRNVTKAYGD-VVISKDI-----------NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVP 71 (369)
T ss_pred EEEEEEEEEeCC-eEEEeee-----------EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC
Confidence 345666666653 2366777 78888888899999999999999999999999999999998854432 1
Q ss_pred HHHHHhhhcCCCCceehh-hH-hhhhcc---cCcCcccHHHHHHHHHHhhhc
Q psy1371 196 RLNHLLSVAPQNSIILLE-DI-DAAFVT---REESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 196 ~~~~~~~~~~q~~~lf~d-ei-d~~~~~---r~~~~~~~~~~~~~~l~~~~~ 242 (244)
..++.+++++|+..+|.. ++ |++... +.......++....+++++++
T Consensus 72 ~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL 123 (369)
T PRK11000 72 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQL 123 (369)
T ss_pred HhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCC
Confidence 234568999998766632 33 444422 222222333445566666665
No 166
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=3.4e-12 Score=109.79 Aligned_cols=113 Identities=15% Similarity=0.054 Sum_probs=76.2
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC----H
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT----D 194 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~----~ 194 (244)
++++.+.|+....+++++ ++.+++|+.++|+||||+|||||+++|+|++.++.|.+.+++.... .
T Consensus 4 ~~~l~~~~~~~~~~l~~v-----------sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 72 (274)
T PRK13644 4 LENVSYSYPDGTPALENI-----------NLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKL 72 (274)
T ss_pred EEEEEEEcCCCCceeeee-----------EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccH
Confidence 456666663223477888 8888888889999999999999999999999999999999985442 2
Q ss_pred HHHHHHhhhcCCCCc--eehhhH-hhhhccc---CcCcccHHHHHHHHHHhhhc
Q psy1371 195 DRLNHLLSVAPQNSI--ILLEDI-DAAFVTR---EESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 195 ~~~~~~~~~~~q~~~--lf~dei-d~~~~~r---~~~~~~~~~~~~~~l~~~~~ 242 (244)
..+++.+++++|++. ++-.++ |++...+ .......++....+++++++
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl 126 (274)
T PRK13644 73 QGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGL 126 (274)
T ss_pred HHHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 456677899998753 332233 4443221 11222223344556666654
No 167
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.22 E-value=1.7e-12 Score=109.38 Aligned_cols=82 Identities=21% Similarity=0.229 Sum_probs=63.7
Q ss_pred CCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH-HH
Q psy1371 118 PLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD-DR 196 (244)
Q Consensus 118 ~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~-~~ 196 (244)
.++++.+.|+. ..+++++ ++.+++++.++|.||||+|||||+++|+|++.++.|.+.+++..... ..
T Consensus 4 ~~~~l~~~~~~-~~il~~v-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~ 71 (239)
T cd03296 4 EVRNVSKRFGD-FVALDDV-----------SLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV 71 (239)
T ss_pred EEEeEEEEECC-EEeeeee-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc
Confidence 45677776654 3477888 88888888899999999999999999999999999999998854321 11
Q ss_pred HHHHhhhcCCCCcee
Q psy1371 197 LNHLLSVAPQNSIIL 211 (244)
Q Consensus 197 ~~~~~~~~~q~~~lf 211 (244)
.++.+++++|++.++
T Consensus 72 ~~~~i~~v~q~~~~~ 86 (239)
T cd03296 72 QERNVGFVFQHYALF 86 (239)
T ss_pred cccceEEEecCCccc
Confidence 245688899876555
No 168
>KOG0732|consensus
Probab=99.22 E-value=2.6e-11 Score=117.79 Aligned_cols=128 Identities=23% Similarity=0.273 Sum_probs=99.9
Q ss_pred CCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC-----
Q psy1371 115 RRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE----- 189 (244)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~----- 189 (244)
..+.|++|.+-.+....+.+.+-..+-++++|.++++.+++|++++||||||||..+++++..+....-.+....
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 347788887776666777778888899999999999999999999999999999999999998865444443311
Q ss_pred -----CCCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCcCcc-cHHHHHHHHHHhhhc
Q psy1371 190 -----RGLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREESSQ-GLEDIDAAFVTREES 242 (244)
Q Consensus 190 -----~~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~~~~-~~~~~~~~~l~~~~~ 242 (244)
.+..+..+|-.|..+. |++++|+||||-++..|....+ ....+...+|..+|.
T Consensus 340 ~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdG 400 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDG 400 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccC
Confidence 4556677888888775 8999999999999988853333 234677777766653
No 169
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.22 E-value=8e-12 Score=106.49 Aligned_cols=96 Identities=18% Similarity=0.209 Sum_probs=70.8
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCC---CCCHH-HHHHHhhhcCCCCcee-----hhhHhhh
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSER---GLTDD-RLNHLLSVAPQNSIIL-----LEDIDAA 218 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~---~~~~~-~~~~~~~~~~q~~~lf-----~deid~~ 218 (244)
++.++.++-++|.|||||||||++|+|||+..|+.|.|.+++. +.+.. .-.+.+++++|+.-+| .|||-.-
T Consensus 22 ~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFG 101 (345)
T COG1118 22 SLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFG 101 (345)
T ss_pred eeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhc
Confidence 6677777778999999999999999999999999999999996 54442 3456799999987777 4555433
Q ss_pred hccc-C-cCcccHHHHHHHHHHhhhcC
Q psy1371 219 FVTR-E-ESSQGLEDIDAAFVTREESS 243 (244)
Q Consensus 219 ~~~r-~-~~~~~~~~~~~~~l~~~~~~ 243 (244)
+..+ . .+....++-..++|+.+.++
T Consensus 102 l~~~~~~p~~~~~r~rv~elL~lvqL~ 128 (345)
T COG1118 102 LKVRKERPSEAEIRARVEELLRLVQLE 128 (345)
T ss_pred ccccccCCChhhHHHHHHHHHHHhccc
Confidence 3222 1 22345566677777777654
No 170
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=6.7e-12 Score=107.73 Aligned_cols=80 Identities=18% Similarity=0.189 Sum_probs=64.3
Q ss_pred CCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC----
Q psy1371 118 PLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT---- 193 (244)
Q Consensus 118 ~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~---- 193 (244)
.++++.+.|+. ..+++++ ++.++.++.++|+||||||||||+++|+|++.++.|.+.+++....
T Consensus 3 ~~~~l~~~~~~-~~il~~i-----------sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~ 70 (271)
T PRK13638 3 ATSDLWFRYQD-EPVLKGL-----------NLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKR 70 (271)
T ss_pred EEEEEEEEcCC-cccccce-----------EEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccC
Confidence 35667777654 3478888 8888888889999999999999999999999999999999885442
Q ss_pred -HHHHHHHhhhcCCCCc
Q psy1371 194 -DDRLNHLLSVAPQNSI 209 (244)
Q Consensus 194 -~~~~~~~~~~~~q~~~ 209 (244)
...+++.+++++|+..
T Consensus 71 ~~~~~~~~i~~v~q~~~ 87 (271)
T PRK13638 71 GLLALRQQVATVFQDPE 87 (271)
T ss_pred CHHHHHhheEEEeeChh
Confidence 2345677899998753
No 171
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.22 E-value=1.8e-11 Score=105.01 Aligned_cols=77 Identities=14% Similarity=0.187 Sum_probs=55.6
Q ss_pred HHHHHhcChhhhh--hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---HHHH----HHHhhhcC
Q psy1371 135 DIKQFVADPAWYL--DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT---DDRL----NHLLSVAP 205 (244)
Q Consensus 135 ~i~~~~~~~~~~~--~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~---~~~~----~~~~~~~~ 205 (244)
++...++....++ ++.+++++.++|+||||||||||+++|+|++.++.|.+.+++.... ...+ ++.+++++
T Consensus 29 ~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~ 108 (269)
T cd03294 29 EILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVF 108 (269)
T ss_pred hhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEe
Confidence 4444443333333 5566677779999999999999999999999999999999885432 2222 34688899
Q ss_pred CCCcee
Q psy1371 206 QNSIIL 211 (244)
Q Consensus 206 q~~~lf 211 (244)
|.+.+|
T Consensus 109 q~~~~~ 114 (269)
T cd03294 109 QSFALL 114 (269)
T ss_pred cCcccC
Confidence 876655
No 172
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.22 E-value=6.4e-12 Score=104.48 Aligned_cols=91 Identities=21% Similarity=0.251 Sum_probs=70.1
Q ss_pred CCCCccccChhHH-HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC---
Q psy1371 117 RPLNSVVLDSGVA-DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL--- 192 (244)
Q Consensus 117 ~~~~~v~~~~~~~-~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~--- 192 (244)
+.++++.+.++.. ..+++++ ++.+++++.++|.||||+|||||+++|+|.+.++.|.+.+++...
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i-----------~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~ 71 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNI-----------SFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKI 71 (221)
T ss_pred EEEEEEEEecCCCCcccccce-----------EEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhC
Confidence 3456677666422 3478888 888888888999999999999999999999999999999988543
Q ss_pred CHHHHHHHhhhcCCCCceehhhH-hhh
Q psy1371 193 TDDRLNHLLSVAPQNSIILLEDI-DAA 218 (244)
Q Consensus 193 ~~~~~~~~~~~~~q~~~lf~dei-d~~ 218 (244)
....+++.+++++|++.++-..+ |++
T Consensus 72 ~~~~~~~~i~~~~q~~~l~~~tv~enl 98 (221)
T cd03244 72 GLHDLRSRISIIPQDPVLFSGTIRSNL 98 (221)
T ss_pred CHHHHhhhEEEECCCCccccchHHHHh
Confidence 33456778899999876664344 444
No 173
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.22 E-value=4.8e-12 Score=105.65 Aligned_cols=79 Identities=18% Similarity=0.205 Sum_probs=62.5
Q ss_pred CCccccChhHH---HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH-
Q psy1371 119 LNSVVLDSGVA---DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD- 194 (244)
Q Consensus 119 ~~~v~~~~~~~---~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~- 194 (244)
+++|.+.|+.. ..+++++ ++.++.|+.++|+||||||||||+++|+|++.++.|.+.+++.....
T Consensus 4 ~~~v~~~~~~~~~~~~~l~~v-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~ 72 (228)
T cd03257 4 VKNLSVSFPTGGGSVKALDDV-----------SFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKL 72 (228)
T ss_pred EEeeeEeccCCCcceeeecCc-----------eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccc
Confidence 45666666432 1467888 78888888899999999999999999999999999999998854422
Q ss_pred -----HHHHHHhhhcCCCC
Q psy1371 195 -----DRLNHLLSVAPQNS 208 (244)
Q Consensus 195 -----~~~~~~~~~~~q~~ 208 (244)
..+++.+++++|++
T Consensus 73 ~~~~~~~~~~~i~~~~q~~ 91 (228)
T cd03257 73 SRRLRKIRRKEIQMVFQDP 91 (228)
T ss_pred chhhHHHhhccEEEEecCc
Confidence 34566789999876
No 174
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=5.2e-12 Score=108.92 Aligned_cols=81 Identities=17% Similarity=0.122 Sum_probs=65.6
Q ss_pred CCCCccccChhH-HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC--
Q psy1371 117 RPLNSVVLDSGV-ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT-- 193 (244)
Q Consensus 117 ~~~~~v~~~~~~-~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~-- 193 (244)
++++++.+.|+. ...+++++ ++.+..|+.++|.||||+|||||+++|+|.++++.|.+.+++...+
T Consensus 6 l~~~~l~~~~~~~~~~~l~~v-----------sl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~ 74 (279)
T PRK13635 6 IRVEHISFRYPDAATYALKDV-----------SFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEE 74 (279)
T ss_pred EEEEEEEEEeCCCCccceeee-----------EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcC
Confidence 456777777643 23477888 8888888889999999999999999999999999999999995543
Q ss_pred -HHHHHHHhhhcCCCC
Q psy1371 194 -DDRLNHLLSVAPQNS 208 (244)
Q Consensus 194 -~~~~~~~~~~~~q~~ 208 (244)
...+++.+++++|++
T Consensus 75 ~~~~~~~~i~~~~q~~ 90 (279)
T PRK13635 75 TVWDVRRQVGMVFQNP 90 (279)
T ss_pred cHHHHhhheEEEEeCH
Confidence 234567789999875
No 175
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=8.5e-12 Score=106.99 Aligned_cols=81 Identities=19% Similarity=0.225 Sum_probs=66.4
Q ss_pred CCCCccccChhHH-HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC--
Q psy1371 117 RPLNSVVLDSGVA-DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT-- 193 (244)
Q Consensus 117 ~~~~~v~~~~~~~-~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~-- 193 (244)
+.++++.+.|+.. ..+++++ ++.+++++.++|.||||+|||||+++|+|++.++.|.+.+++...+
T Consensus 8 l~i~~l~~~~~~~~~~~l~~i-----------sl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~ 76 (269)
T PRK13648 8 IVFKNVSFQYQSDASFTLKDV-----------SFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDD 76 (269)
T ss_pred EEEEEEEEEcCCCCCcceeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcC
Confidence 5678888877532 2467888 8888888889999999999999999999999999999999985442
Q ss_pred -HHHHHHHhhhcCCCC
Q psy1371 194 -DDRLNHLLSVAPQNS 208 (244)
Q Consensus 194 -~~~~~~~~~~~~q~~ 208 (244)
...+++.+++++|++
T Consensus 77 ~~~~~~~~i~~v~q~~ 92 (269)
T PRK13648 77 NFEKLRKHIGIVFQNP 92 (269)
T ss_pred CHHHHHhheeEEEeCh
Confidence 345677889999875
No 176
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.21 E-value=6.6e-12 Score=105.94 Aligned_cols=90 Identities=19% Similarity=0.196 Sum_probs=69.5
Q ss_pred CCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---H
Q psy1371 118 PLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT---D 194 (244)
Q Consensus 118 ~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~---~ 194 (244)
.++++.+.|+. ..+++++ ++.+++++.++|+||||||||||+++|+|.++++.|.+.+++.+.. .
T Consensus 5 ~~~~l~~~~~~-~~~l~~v-----------sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~ 72 (241)
T PRK14250 5 EFKEVSYSSFG-KEILKDI-----------SVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDV 72 (241)
T ss_pred EEEeEEEEeCC-eeeeeee-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCh
Confidence 45667766643 3467788 7888888889999999999999999999999999999999885432 2
Q ss_pred HHHHHHhhhcCCCCceehhhH-hhhh
Q psy1371 195 DRLNHLLSVAPQNSIILLEDI-DAAF 219 (244)
Q Consensus 195 ~~~~~~~~~~~q~~~lf~dei-d~~~ 219 (244)
..+++.+++++|++.+|-.++ |++.
T Consensus 73 ~~~~~~i~~~~q~~~~~~~tv~e~l~ 98 (241)
T PRK14250 73 IDLRRKIGMVFQQPHLFEGTVKDNIE 98 (241)
T ss_pred HHhhhcEEEEecCchhchhhHHHHHh
Confidence 345677889999877664455 5544
No 177
>KOG0054|consensus
Probab=99.21 E-value=1.1e-11 Score=124.18 Aligned_cols=98 Identities=20% Similarity=0.159 Sum_probs=85.4
Q ss_pred CCCCCCCccccChhH-HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC
Q psy1371 114 KRRRPLNSVVLDSGV-ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL 192 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~-~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~ 192 (244)
.+.++|+|+...|.. ...++++| ++.+.+++.++++|.+|+|||||+.+|-++..+..|.|.++|.++
T Consensus 1136 ~G~I~f~~~~~RYrp~lp~VLk~i-----------s~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI 1204 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRPNLPLVLKGI-----------SFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDI 1204 (1381)
T ss_pred CCeEEEEEeEEEeCCCCcchhcCc-----------eEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeec
Confidence 456899999998854 36799999 999999999999999999999999999999999999999999665
Q ss_pred C---HHHHHHHhhhcCCCCceehhhH-hhhhccc
Q psy1371 193 T---DDRLNHLLSVAPQNSIILLEDI-DAAFVTR 222 (244)
Q Consensus 193 ~---~~~~~~~~~~~~q~~~lf~dei-d~~~~~r 222 (244)
+ -..+|+.++.+||++++|.+++ .|+-+..
T Consensus 1205 ~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~ 1238 (1381)
T KOG0054|consen 1205 SKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFD 1238 (1381)
T ss_pred ccccHHHHHhcCeeeCCCCceecCccccccCccc
Confidence 4 4789999999999999998888 5554443
No 178
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=6.2e-12 Score=108.32 Aligned_cols=114 Identities=13% Similarity=0.130 Sum_probs=76.6
Q ss_pred CCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---H
Q psy1371 118 PLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT---D 194 (244)
Q Consensus 118 ~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~---~ 194 (244)
.++++.+.|+....+++++ ++.+++|+.++|+||||+|||||+++|+|.+.++.|.+.+++.... .
T Consensus 5 ~~~~l~~~~~~~~~~l~~v-----------sl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 73 (277)
T PRK13652 5 ETRDLCYSYSGSKEALNNI-----------NFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENI 73 (277)
T ss_pred EEEEEEEEeCCCCceeeEe-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCH
Confidence 3566666664222467888 8888888889999999999999999999999999999999885432 3
Q ss_pred HHHHHHhhhcCCCC--ceehhhH-hhhhcc---cCcCcccHHHHHHHHHHhhhc
Q psy1371 195 DRLNHLLSVAPQNS--IILLEDI-DAAFVT---REESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 195 ~~~~~~~~~~~q~~--~lf~dei-d~~~~~---r~~~~~~~~~~~~~~l~~~~~ 242 (244)
..+++.+++++|++ .++-.++ |++... ........++....+++++++
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l 127 (277)
T PRK13652 74 REVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGL 127 (277)
T ss_pred HHHHhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 45667789999874 2442233 344321 111122223344566666654
No 179
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.21 E-value=4.5e-12 Score=107.60 Aligned_cols=82 Identities=16% Similarity=0.240 Sum_probs=64.4
Q ss_pred CCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH---
Q psy1371 118 PLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD--- 194 (244)
Q Consensus 118 ~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~--- 194 (244)
.++++.+.|+. ..+++++ ++.+++++.++|+||||||||||+++|+|.+.++.|.+.+++.....
T Consensus 2 ~~~~l~~~~~~-~~~l~~v-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~ 69 (252)
T TIGR03005 2 RFSDVTKRFGI-LTVLDGL-----------NFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPG 69 (252)
T ss_pred EEEEEEEEeCC-eeEEeee-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccc
Confidence 35667776653 3467788 88888888899999999999999999999999999999998844321
Q ss_pred -------------HHHHHHhhhcCCCCcee
Q psy1371 195 -------------DRLNHLLSVAPQNSIIL 211 (244)
Q Consensus 195 -------------~~~~~~~~~~~q~~~lf 211 (244)
..+++.+++++|+..++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 99 (252)
T TIGR03005 70 RNGPLVPADEKHLRQMRNKIGMVFQSFNLF 99 (252)
T ss_pred ccccccccchhHHHHHhhCeEEEecCcccC
Confidence 23566788899876555
No 180
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.21 E-value=1.8e-11 Score=92.81 Aligned_cols=85 Identities=26% Similarity=0.430 Sum_probs=61.5
Q ss_pred eEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCC-----CCCHHHHHHHhhhcC--C-CCceehhhHhhhhcccC-cCcc
Q psy1371 157 YLLYGPPGCGKSSFITALAGELEFGICVLNLSER-----GLTDDRLNHLLSVAP--Q-NSIILLEDIDAAFVTRE-ESSQ 227 (244)
Q Consensus 157 i~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~-----~~~~~~~~~~~~~~~--q-~~~lf~deid~~~~~r~-~~~~ 227 (244)
++|+||||||||++++.++..++.+...++.... ......++..+..+. . ++++|+||+|.+..... ....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 5899999999999999999999887777776541 223355666666653 3 69999999999988762 2233
Q ss_pred cHHHHHHHHHHhhh
Q psy1371 228 GLEDIDAAFVTREE 241 (244)
Q Consensus 228 ~~~~~~~~~l~~~~ 241 (244)
....+.+.++..++
T Consensus 81 ~~~~~~~~L~~~l~ 94 (132)
T PF00004_consen 81 FEQRLLNQLLSLLD 94 (132)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred ccccccceeeeccc
Confidence 34566667666655
No 181
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.20 E-value=5.6e-11 Score=98.00 Aligned_cols=100 Identities=18% Similarity=0.289 Sum_probs=58.1
Q ss_pred CCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCC
Q psy1371 112 HPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERG 191 (244)
Q Consensus 112 ~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~ 191 (244)
...+|.++++++.+...++.+.--+.....+.+.+ ..++|+||||+|||||++.||..++.+....+.....
T Consensus 16 ~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l--------~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~ 87 (233)
T PF05496_consen 16 ERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEAL--------DHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE 87 (233)
T ss_dssp HHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS-----------EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--
T ss_pred HhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCc--------ceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh
Confidence 34567899999888765544311222112222222 3479999999999999999999999877655443211
Q ss_pred CCHHHHHHHhhhcCCCCceehhhHhhhhc
Q psy1371 192 LTDDRLNHLLSVAPQNSIILLEDIDAAFV 220 (244)
Q Consensus 192 ~~~~~~~~~~~~~~q~~~lf~deid~~~~ 220 (244)
....+...+....+..+||+|||..+..
T Consensus 88 -k~~dl~~il~~l~~~~ILFIDEIHRlnk 115 (233)
T PF05496_consen 88 -KAGDLAAILTNLKEGDILFIDEIHRLNK 115 (233)
T ss_dssp -SCHHHHHHHHT--TT-EEEECTCCC--H
T ss_pred -hHHHHHHHHHhcCCCcEEEEechhhccH
Confidence 1245666666677889999999987643
No 182
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.20 E-value=9e-12 Score=106.21 Aligned_cols=81 Identities=27% Similarity=0.383 Sum_probs=64.0
Q ss_pred CCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC---CH
Q psy1371 118 PLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL---TD 194 (244)
Q Consensus 118 ~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~---~~ 194 (244)
.++++.+.|+. ..+++++ ++.++.++.++|+||||||||||+++|+|++.++.|.+.+++... ..
T Consensus 4 ~~~~l~~~~~~-~~il~~i-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~ 71 (258)
T PRK13548 4 EARNLSVRLGG-RTLLDDV-----------SLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSP 71 (258)
T ss_pred EEEeEEEEeCC-eeeeeee-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCH
Confidence 35666666653 3467888 788888888999999999999999999999999999999988543 23
Q ss_pred HHHHHHhhhcCCCCce
Q psy1371 195 DRLNHLLSVAPQNSII 210 (244)
Q Consensus 195 ~~~~~~~~~~~q~~~l 210 (244)
..+++.+++++|++.+
T Consensus 72 ~~~~~~i~~~~q~~~~ 87 (258)
T PRK13548 72 AELARRRAVLPQHSSL 87 (258)
T ss_pred HHhhhheEEEccCCcC
Confidence 3456678899987655
No 183
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.20 E-value=5.5e-12 Score=105.41 Aligned_cols=84 Identities=20% Similarity=0.253 Sum_probs=64.0
Q ss_pred CCCCccccChhHH---HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC
Q psy1371 117 RPLNSVVLDSGVA---DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT 193 (244)
Q Consensus 117 ~~~~~v~~~~~~~---~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~ 193 (244)
+.++++.+.|+.. ..+++++ ++.+..++.++|.||||+|||||+++|+|++.++.|.+.+++....
T Consensus 7 l~~~~l~~~~~~~~~~~~~l~~~-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~ 75 (228)
T PRK10584 7 VEVHHLKKSVGQGEHELSILTGV-----------ELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLH 75 (228)
T ss_pred EEEeeeEEEccCCCcceEEEecc-----------EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcc
Confidence 4567777766431 1367777 7888888889999999999999999999999999999999885432
Q ss_pred ---HHH---H-HHHhhhcCCCCcee
Q psy1371 194 ---DDR---L-NHLLSVAPQNSIIL 211 (244)
Q Consensus 194 ---~~~---~-~~~~~~~~q~~~lf 211 (244)
... . ++.+++++|+..++
T Consensus 76 ~~~~~~~~~~~~~~i~~~~q~~~l~ 100 (228)
T PRK10584 76 QMDEEARAKLRAKHVGFVFQSFMLI 100 (228)
T ss_pred cCCHHHHHHHHhheEEEEEcccccC
Confidence 221 2 24588888876555
No 184
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=8.2e-12 Score=106.12 Aligned_cols=92 Identities=21% Similarity=0.163 Sum_probs=70.7
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC-----CeEEEEeCCC
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF-----GICVLNLSER 190 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~-----~~g~i~~~~~ 190 (244)
-+.++++.+.|+. ..+++++ ++.+++++.++|+||||||||||+++|+|++.+ +.|.+.+++.
T Consensus 7 ~l~~~~l~~~~~~-~~il~~v-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 74 (254)
T PRK14273 7 IIETENLNLFYTD-FKALNNI-----------NIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGK 74 (254)
T ss_pred eEEEeeeEEEeCC-ceeecce-----------eeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCE
Confidence 3567888887754 3477888 888888888999999999999999999999986 4899999885
Q ss_pred CCC-----HHHHHHHhhhcCCCCceehhhH-hhhh
Q psy1371 191 GLT-----DDRLNHLLSVAPQNSIILLEDI-DAAF 219 (244)
Q Consensus 191 ~~~-----~~~~~~~~~~~~q~~~lf~dei-d~~~ 219 (244)
... ...+++.+++++|+..+|..++ |++.
T Consensus 75 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~ 109 (254)
T PRK14273 75 NIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNIS 109 (254)
T ss_pred ecccccccHHHHhhceEEEeeccccccCcHHHHHH
Confidence 432 2345677899998866654444 5553
No 185
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.19 E-value=3.5e-12 Score=102.73 Aligned_cols=86 Identities=22% Similarity=0.353 Sum_probs=65.1
Q ss_pred CCccccChhHH-HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH--H
Q psy1371 119 LNSVVLDSGVA-DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD--D 195 (244)
Q Consensus 119 ~~~v~~~~~~~-~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~--~ 195 (244)
++++.+.++.. ..+++++ ++.+++++.+++.||||||||||+++|+|.+.+..|.+.+++..... .
T Consensus 3 ~~~~~~~~~~~~~~~l~~i-----------~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~ 71 (178)
T cd03247 3 INNVSFSYPEQEQQVLKNL-----------SLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEK 71 (178)
T ss_pred EEEEEEEeCCCCccceEEE-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHH
Confidence 44555555332 2366777 88888888899999999999999999999999999999998854432 3
Q ss_pred HHHHHhhhcCCCCceehhhH
Q psy1371 196 RLNHLLSVAPQNSIILLEDI 215 (244)
Q Consensus 196 ~~~~~~~~~~q~~~lf~dei 215 (244)
.+++.+++++|++.++...+
T Consensus 72 ~~~~~i~~~~q~~~~~~~tv 91 (178)
T cd03247 72 ALSSLISVLNQRPYLFDTTL 91 (178)
T ss_pred HHHhhEEEEccCCeeecccH
Confidence 45677888998876663333
No 186
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.19 E-value=6.8e-12 Score=105.27 Aligned_cols=81 Identities=22% Similarity=0.275 Sum_probs=64.0
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH-HHH
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD-DRL 197 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~-~~~ 197 (244)
++++.+.++.+ .+++++ ++.+.+++.++|+||||+|||||+++|+|.++++.|.+.+++..... ...
T Consensus 3 ~~~l~~~~~~~-~il~~i-----------~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~ 70 (232)
T cd03300 3 LENVSKFYGGF-VALDGV-----------SLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPH 70 (232)
T ss_pred EEeEEEEeCCe-eeeccc-----------eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChh
Confidence 55666666543 477888 88888888899999999999999999999999999999998854432 123
Q ss_pred HHHhhhcCCCCcee
Q psy1371 198 NHLLSVAPQNSIIL 211 (244)
Q Consensus 198 ~~~~~~~~q~~~lf 211 (244)
++.+++++|++.+|
T Consensus 71 ~~~i~~~~q~~~~~ 84 (232)
T cd03300 71 KRPVNTVFQNYALF 84 (232)
T ss_pred hcceEEEecccccC
Confidence 56788899887666
No 187
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.19 E-value=5.8e-12 Score=108.40 Aligned_cols=113 Identities=13% Similarity=0.095 Sum_probs=76.3
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC-----
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT----- 193 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~----- 193 (244)
++++.+.|+....+++++ ++.+.+|+.++|+||||+|||||+++|+|.++++.|.+.+++...+
T Consensus 4 ~~~l~~~~~~~~~~l~~v-----------sl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~ 72 (275)
T PRK13639 4 TRDLKYSYPDGTEALKGI-----------NFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKS 72 (275)
T ss_pred EEEEEEEeCCCCeeeeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccch
Confidence 556666664222467788 8888888889999999999999999999999999999999985442
Q ss_pred HHHHHHHhhhcCCCC--ceehhhH-hhhhccc---CcCcccHHHHHHHHHHhhhc
Q psy1371 194 DDRLNHLLSVAPQNS--IILLEDI-DAAFVTR---EESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 194 ~~~~~~~~~~~~q~~--~lf~dei-d~~~~~r---~~~~~~~~~~~~~~l~~~~~ 242 (244)
...+++.+++++|++ .++-.++ |++...+ ........+....+++++++
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L 127 (275)
T PRK13639 73 LLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGM 127 (275)
T ss_pred HHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 234567789999874 3343344 4443221 11111223344556666654
No 188
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.19 E-value=8.4e-12 Score=102.38 Aligned_cols=81 Identities=19% Similarity=0.180 Sum_probs=63.8
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC--HHH
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT--DDR 196 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~--~~~ 196 (244)
++++.+.++. ..+++++ ++.+.+++.++|.||||||||||+++|+|++.++.|.+.+++.... ...
T Consensus 4 ~~~l~~~~~~-~~il~~~-----------s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~ 71 (200)
T PRK13540 4 VIELDFDYHD-QPLLQQI-----------SFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCT 71 (200)
T ss_pred EEEEEEEeCC-eeEEeee-----------eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHH
Confidence 4566666543 3477888 7888888889999999999999999999999999999999986543 234
Q ss_pred HHHHhhhcCCCCcee
Q psy1371 197 LNHLLSVAPQNSIIL 211 (244)
Q Consensus 197 ~~~~~~~~~q~~~lf 211 (244)
+++.+++++|+..++
T Consensus 72 ~~~~i~~~~q~~~~~ 86 (200)
T PRK13540 72 YQKQLCFVGHRSGIN 86 (200)
T ss_pred HHhheEEeccccccC
Confidence 567788888865543
No 189
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.19 E-value=5.7e-12 Score=107.97 Aligned_cols=97 Identities=13% Similarity=0.131 Sum_probs=74.5
Q ss_pred CCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC-----CCeEEE
Q psy1371 111 GHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE-----FGICVL 185 (244)
Q Consensus 111 ~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~-----~~~g~i 185 (244)
......+.++++.+.++. ..+++++ ++.+.+++.++|+||||||||||+++|+|++. ++.|.+
T Consensus 15 ~~~~~~l~~~nl~~~~~~-~~il~~v-----------sl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i 82 (267)
T PRK14237 15 PEEEIALSTKDLHVYYGK-KEAIKGI-----------DMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQI 82 (267)
T ss_pred CCCCeEEEEeeEEEEECC-eeeEeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEE
Confidence 334445778999988754 4577888 88888888899999999999999999999986 478999
Q ss_pred EeCCCCCC-----HHHHHHHhhhcCCCCceehhhH-hhhh
Q psy1371 186 NLSERGLT-----DDRLNHLLSVAPQNSIILLEDI-DAAF 219 (244)
Q Consensus 186 ~~~~~~~~-----~~~~~~~~~~~~q~~~lf~dei-d~~~ 219 (244)
.+++...+ ...+++.+++++|...+|..++ |++.
T Consensus 83 ~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~ 122 (267)
T PRK14237 83 LYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENIT 122 (267)
T ss_pred EECCEEcccccCChHHHhcceEEEecCCccccccHHHHHH
Confidence 99885543 2345677899999866664455 5554
No 190
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.19 E-value=6.7e-12 Score=108.27 Aligned_cols=115 Identities=11% Similarity=0.063 Sum_probs=78.0
Q ss_pred CCCCccccChhH-----HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCC
Q psy1371 117 RPLNSVVLDSGV-----ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERG 191 (244)
Q Consensus 117 ~~~~~v~~~~~~-----~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~ 191 (244)
+.++++.+.|+. ...+++++ ++.+.+|+.++|+||||||||||+++|+|.+.++.|.+.+++..
T Consensus 5 l~~~~l~~~~~~~~~~~~~~vl~~v-----------s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~ 73 (280)
T PRK13633 5 IKCKNVSYKYESNEESTEKLALDDV-----------NLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLD 73 (280)
T ss_pred EEEeeeEEEcCCCCCCCCcceeeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEe
Confidence 346677777642 13478888 88888888899999999999999999999999999999999854
Q ss_pred CCH----HHHHHHhhhcCCCC--ceehhhH-hhhhcc---cCcCcccHHHHHHHHHHhhhc
Q psy1371 192 LTD----DRLNHLLSVAPQNS--IILLEDI-DAAFVT---REESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 192 ~~~----~~~~~~~~~~~q~~--~lf~dei-d~~~~~---r~~~~~~~~~~~~~~l~~~~~ 242 (244)
... ..+++.+++++|++ .++...+ |++... .+......++....+++++++
T Consensus 74 i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL 134 (280)
T PRK13633 74 TSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGM 134 (280)
T ss_pred ccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCC
Confidence 432 34577789999875 2332233 344321 111222333445566666654
No 191
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=6.1e-12 Score=106.04 Aligned_cols=83 Identities=16% Similarity=0.210 Sum_probs=64.7
Q ss_pred CCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---H
Q psy1371 118 PLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT---D 194 (244)
Q Consensus 118 ~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~---~ 194 (244)
.++++.+.|+. ..+++++ ++.+++|+.++|+||||+|||||+++|+|++.++.|.+.+++.... .
T Consensus 5 ~~~~l~~~~~~-~~~l~~~-----------sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~ 72 (241)
T PRK10895 5 TAKNLAKAYKG-RRVVEDV-----------SLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPL 72 (241)
T ss_pred EEeCcEEEeCC-EEEEeee-----------eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH
Confidence 45666666643 2467777 8888888889999999999999999999999999999999885432 2
Q ss_pred -HHHHHHhhhcCCCCceeh
Q psy1371 195 -DRLNHLLSVAPQNSIILL 212 (244)
Q Consensus 195 -~~~~~~~~~~~q~~~lf~ 212 (244)
...++.+++++|+..++.
T Consensus 73 ~~~~~~~i~~~~q~~~~~~ 91 (241)
T PRK10895 73 HARARRGIGYLPQEASIFR 91 (241)
T ss_pred HHHHHhCeEEeccCCcccc
Confidence 234566889998866553
No 192
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.19 E-value=4.8e-12 Score=103.43 Aligned_cols=84 Identities=19% Similarity=0.306 Sum_probs=67.9
Q ss_pred CCCCccccChhH-----HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhccc--CCCeEEEEeCC
Q psy1371 117 RPLNSVVLDSGV-----ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGEL--EFGICVLNLSE 189 (244)
Q Consensus 117 ~~~~~v~~~~~~-----~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~--~~~~g~i~~~~ 189 (244)
+.++++++.|+. ...+++++ ++.+++++.++|.||||+|||||+++|+|++ .+..|.+.+++
T Consensus 4 l~~~~ls~~~~~~~~~~~~~~l~~~-----------~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g 72 (194)
T cd03213 4 LSFRNLTVTVKSSPSKSGKQLLKNV-----------SGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLING 72 (194)
T ss_pred EEEEeeEEEEecCCCcccccceecc-----------eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECC
Confidence 456777777754 13578888 7888888889999999999999999999999 99999999998
Q ss_pred CCCCHHHHHHHhhhcCCCCcee
Q psy1371 190 RGLTDDRLNHLLSVAPQNSIIL 211 (244)
Q Consensus 190 ~~~~~~~~~~~~~~~~q~~~lf 211 (244)
.......+++.+++++|+..++
T Consensus 73 ~~~~~~~~~~~i~~~~q~~~~~ 94 (194)
T cd03213 73 RPLDKRSFRKIIGYVPQDDILH 94 (194)
T ss_pred EeCchHhhhheEEEccCcccCC
Confidence 7665545667788899876554
No 193
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.19 E-value=1.4e-11 Score=102.42 Aligned_cols=91 Identities=18% Similarity=0.215 Sum_probs=69.0
Q ss_pred CCCccccChhHH-HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC---C
Q psy1371 118 PLNSVVLDSGVA-DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL---T 193 (244)
Q Consensus 118 ~~~~v~~~~~~~-~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~---~ 193 (244)
.++++.+.++.. ..+++++ ++.+++++-++|.||||||||||+++|+|+..++.|.+.+++... +
T Consensus 4 ~~~~l~~~~~~~~~~~l~~i-----------~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~ 72 (220)
T cd03245 4 EFRNVSFSYPNQEIPALDNV-----------SLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLD 72 (220)
T ss_pred EEEEEEEEcCCCCcccccce-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCC
Confidence 455666665421 3477888 888888888999999999999999999999999999999988543 2
Q ss_pred HHHHHHHhhhcCCCCceehhhH-hhhh
Q psy1371 194 DDRLNHLLSVAPQNSIILLEDI-DAAF 219 (244)
Q Consensus 194 ~~~~~~~~~~~~q~~~lf~dei-d~~~ 219 (244)
...+++.+++++|++.++...+ |++.
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~tv~e~l~ 99 (220)
T cd03245 73 PADLRRNIGYVPQDVTLFYGTLRDNIT 99 (220)
T ss_pred HHHHHhhEEEeCCCCccccchHHHHhh
Confidence 3345677899999876664455 5554
No 194
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.18 E-value=3.6e-12 Score=108.53 Aligned_cols=79 Identities=23% Similarity=0.370 Sum_probs=60.8
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHHHH
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRLN 198 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~~~ 198 (244)
++++.+.|+. ..+++++ ++.+++|+.++|+||||||||||+++|+|++.++.|.+.+++.+... .+
T Consensus 4 ~~~l~~~~~~-~~il~~v-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~--~~ 69 (255)
T PRK11248 4 ISHLYADYGG-KPALEDI-----------NLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEG--PG 69 (255)
T ss_pred EEEEEEEeCC-eeeEeee-----------eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC--CC
Confidence 4566666543 3467777 78888888899999999999999999999999999999998854432 12
Q ss_pred HHhhhcCCCCcee
Q psy1371 199 HLLSVAPQNSIIL 211 (244)
Q Consensus 199 ~~~~~~~q~~~lf 211 (244)
..+++++|...++
T Consensus 70 ~~~~~v~q~~~~~ 82 (255)
T PRK11248 70 AERGVVFQNEGLL 82 (255)
T ss_pred CcEEEEeCCCccC
Confidence 2467888876555
No 195
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.18 E-value=7.9e-12 Score=106.13 Aligned_cols=92 Identities=20% Similarity=0.197 Sum_probs=70.4
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC-----CCeEEEEeCCC
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE-----FGICVLNLSER 190 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~-----~~~g~i~~~~~ 190 (244)
.+.++++.+.|+. ..+++++ ++.+++++.++|+||||||||||+++|+|+++ ++.|.+.+++.
T Consensus 6 ~l~~~~l~~~~~~-~~il~~i-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 73 (253)
T PRK14242 6 KMEARGLSFFYGD-FQALHDI-----------SLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGE 73 (253)
T ss_pred EEEEeeeEEEECC-eeeecce-----------eEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCE
Confidence 3567888887754 3477888 88888888899999999999999999999864 47899999885
Q ss_pred CCC-----HHHHHHHhhhcCCCCceehhhH-hhhh
Q psy1371 191 GLT-----DDRLNHLLSVAPQNSIILLEDI-DAAF 219 (244)
Q Consensus 191 ~~~-----~~~~~~~~~~~~q~~~lf~dei-d~~~ 219 (244)
... ...+++.+++++|+..+|..++ |++.
T Consensus 74 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~ 108 (253)
T PRK14242 74 NIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVA 108 (253)
T ss_pred EccccccCHHHHhhcEEEEecCCCCCcCcHHHHHH
Confidence 442 2345677999999876664444 4443
No 196
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.18 E-value=8e-12 Score=103.79 Aligned_cols=91 Identities=22% Similarity=0.313 Sum_probs=67.7
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH----
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD---- 194 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~---- 194 (244)
+.++.+.|+....+++++ ++.++.++.++|+||||||||||+++|+|++.++.|.+.+++.....
T Consensus 3 ~~~~~~~~~~~~~il~~v-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~ 71 (218)
T cd03290 3 VTNGYFSWGSGLATLSNI-----------NIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFE 71 (218)
T ss_pred eeeeEEecCCCCcceeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCccccccccc
Confidence 345566665334577888 88888888899999999999999999999999999999998854321
Q ss_pred ---HHHHHHhhhcCCCCceehhhH-hhhhc
Q psy1371 195 ---DRLNHLLSVAPQNSIILLEDI-DAAFV 220 (244)
Q Consensus 195 ---~~~~~~~~~~~q~~~lf~dei-d~~~~ 220 (244)
...++.+++++|.+.++-..+ |++..
T Consensus 72 ~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~ 101 (218)
T cd03290 72 ATRSRNRYSVAYAAQKPWLLNATVEENITF 101 (218)
T ss_pred ccchhhcceEEEEcCCCccccccHHHHHhh
Confidence 123456889998876663344 55543
No 197
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.18 E-value=1.1e-11 Score=105.00 Aligned_cols=90 Identities=19% Similarity=0.248 Sum_probs=69.9
Q ss_pred CCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC---CCeEEEEeCCCCCC-
Q psy1371 118 PLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE---FGICVLNLSERGLT- 193 (244)
Q Consensus 118 ~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~---~~~g~i~~~~~~~~- 193 (244)
.++++.+.|+. ..+++++ ++.+.+++.++|+||||+|||||+++|+|++. ++.|.+.+++.+..
T Consensus 4 ~~~~l~~~~~~-~~~l~~i-----------sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~ 71 (246)
T PRK14269 4 KTTNLNLFYGK-KQALFDI-----------NMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKN 71 (246)
T ss_pred eeeeeEEEECC-Eeeeeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEeccc
Confidence 45677776654 2467888 88888888899999999999999999999974 57899999885443
Q ss_pred --HHHHHHHhhhcCCCCceehhhH-hhhh
Q psy1371 194 --DDRLNHLLSVAPQNSIILLEDI-DAAF 219 (244)
Q Consensus 194 --~~~~~~~~~~~~q~~~lf~dei-d~~~ 219 (244)
...+++.+++++|++.+|..++ |++.
T Consensus 72 ~~~~~~~~~i~~~~q~~~l~~~tv~eni~ 100 (246)
T PRK14269 72 QDVVALRKNVGMVFQQPNVFVKSIYENIS 100 (246)
T ss_pred CCHHHHhhhEEEEecCCccccccHHHHhh
Confidence 2456777899999877775555 6654
No 198
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.18 E-value=8e-12 Score=103.96 Aligned_cols=83 Identities=22% Similarity=0.245 Sum_probs=63.2
Q ss_pred CCccccChhHH---HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH-
Q psy1371 119 LNSVVLDSGVA---DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD- 194 (244)
Q Consensus 119 ~~~v~~~~~~~---~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~- 194 (244)
++++.+.++.. ..+++++ ++.++.++.++|.||||+|||||+++|+|.++++.|.+.+++.....
T Consensus 4 ~~~l~~~~~~~~~~~~il~~v-----------s~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~ 72 (220)
T TIGR02982 4 IRNLNHYYGHGSLRKQVLFDI-----------NLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGA 72 (220)
T ss_pred EEEEEEEccCCCcceeEEeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhc
Confidence 44555544321 3467777 77888888899999999999999999999999999999998854421
Q ss_pred -----HHHHHHhhhcCCCCceeh
Q psy1371 195 -----DRLNHLLSVAPQNSIILL 212 (244)
Q Consensus 195 -----~~~~~~~~~~~q~~~lf~ 212 (244)
...++.+++++|++.+|.
T Consensus 73 ~~~~~~~~~~~i~~~~q~~~~~~ 95 (220)
T TIGR02982 73 SEKELVQLRRNIGYIFQAHNLLG 95 (220)
T ss_pred CHhHHHHHHhheEEEcCChhhcC
Confidence 235677899998876653
No 199
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.18 E-value=7.9e-12 Score=104.84 Aligned_cols=91 Identities=18% Similarity=0.292 Sum_probs=68.8
Q ss_pred CCccccChhHH-HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC---CH
Q psy1371 119 LNSVVLDSGVA-DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL---TD 194 (244)
Q Consensus 119 ~~~v~~~~~~~-~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~---~~ 194 (244)
++++.+.++.. ..+++++ ++.+++++.++|+||||+|||||+++|+|++.++.|.+.+++... ..
T Consensus 3 ~~~l~~~~~~~~~~~l~~i-----------~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 71 (234)
T cd03251 3 FKNVTFRYPGDGPPVLRDI-----------SLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTL 71 (234)
T ss_pred EEEEEEEeCCCCccceeee-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCH
Confidence 44555555322 2467777 788888888999999999999999999999999999999988443 23
Q ss_pred HHHHHHhhhcCCCCceehhhH-hhhhc
Q psy1371 195 DRLNHLLSVAPQNSIILLEDI-DAAFV 220 (244)
Q Consensus 195 ~~~~~~~~~~~q~~~lf~dei-d~~~~ 220 (244)
..+++.+++++|++.++-..+ |++..
T Consensus 72 ~~~~~~i~~~~q~~~~~~~tv~enl~~ 98 (234)
T cd03251 72 ASLRRQIGLVSQDVFLFNDTVAENIAY 98 (234)
T ss_pred HHHHhhEEEeCCCCeeccccHHHHhhc
Confidence 456777899999877765555 55543
No 200
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.18 E-value=7.5e-12 Score=100.18 Aligned_cols=86 Identities=19% Similarity=0.265 Sum_probs=64.6
Q ss_pred CCccccChhHH-HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---H
Q psy1371 119 LNSVVLDSGVA-DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT---D 194 (244)
Q Consensus 119 ~~~v~~~~~~~-~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~---~ 194 (244)
++++.+.++.+ ..+++++ ++.+++++-++|.||||+|||||+++|+|+++++.|.+.+++.... .
T Consensus 3 ~~~l~~~~~~~~~~~l~~i-----------~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~ 71 (171)
T cd03228 3 FKNVSFSYPGRPKPVLKDV-----------SLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDL 71 (171)
T ss_pred EEEEEEEcCCCCcccccce-----------EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCH
Confidence 34455554332 2467777 7888888889999999999999999999999999999999885432 3
Q ss_pred HHHHHHhhhcCCCCceehhhH
Q psy1371 195 DRLNHLLSVAPQNSIILLEDI 215 (244)
Q Consensus 195 ~~~~~~~~~~~q~~~lf~dei 215 (244)
..+++.+++++|++.+|-..+
T Consensus 72 ~~~~~~i~~~~~~~~~~~~t~ 92 (171)
T cd03228 72 ESLRKNIAYVPQDPFLFSGTI 92 (171)
T ss_pred HHHHhhEEEEcCCchhccchH
Confidence 445667888888766654444
No 201
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.18 E-value=9e-12 Score=106.30 Aligned_cols=94 Identities=18% Similarity=0.209 Sum_probs=71.7
Q ss_pred CCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC-----CCeEEEEeC
Q psy1371 114 KRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE-----FGICVLNLS 188 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~-----~~~g~i~~~ 188 (244)
...+.++++.+.|+. ..+++++ ++.+++++.++|+||||+|||||+++|+|.+. ++.|.+.++
T Consensus 11 ~~~l~~~~l~~~~~~-~~il~~i-----------sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~ 78 (260)
T PRK10744 11 PSKIQVRNLNFYYGK-FHALKNI-----------NLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLD 78 (260)
T ss_pred CceEEEEEEEEEeCC-eEEeece-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEEC
Confidence 344678888888754 3577888 88888888899999999999999999999986 468999998
Q ss_pred CCCCC-----HHHHHHHhhhcCCCCceehhhH-hhhh
Q psy1371 189 ERGLT-----DDRLNHLLSVAPQNSIILLEDI-DAAF 219 (244)
Q Consensus 189 ~~~~~-----~~~~~~~~~~~~q~~~lf~dei-d~~~ 219 (244)
+.... ...+++.+++++|+..+|...+ |++.
T Consensus 79 g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~ 115 (260)
T PRK10744 79 GENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIA 115 (260)
T ss_pred CEEccccccchHHHhcceEEEecCCccCcCcHHHHHh
Confidence 85432 2356777899998866653344 5443
No 202
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.18 E-value=7.8e-12 Score=106.47 Aligned_cols=114 Identities=11% Similarity=0.088 Sum_probs=78.7
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT--- 193 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~--- 193 (244)
+.++++.+.|+. ..+++++ ++.++.++.++|+||||+|||||+++|+|++.++.|.+.+++....
T Consensus 6 l~~~~l~~~~~~-~~~l~~i-----------s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~ 73 (257)
T PRK10619 6 LNVIDLHKRYGE-HEVLKGV-----------SLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVR 73 (257)
T ss_pred EEEeeeEEEECC-EEEEeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccc
Confidence 567788777753 2467777 8888888889999999999999999999999999999999885432
Q ss_pred -------------HHHHHHHhhhcCCCCceehh-hH-hhhhc----ccCcCcccHHHHHHHHHHhhhc
Q psy1371 194 -------------DDRLNHLLSVAPQNSIILLE-DI-DAAFV----TREESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 194 -------------~~~~~~~~~~~~q~~~lf~d-ei-d~~~~----~r~~~~~~~~~~~~~~l~~~~~ 242 (244)
...+++.+++++|++.++.+ .+ |++.. .+.......++...++++++++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl 141 (257)
T PRK10619 74 DKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGI 141 (257)
T ss_pred ccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Confidence 12456678999998766521 22 44432 1111122233344566766655
No 203
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.18 E-value=8.3e-12 Score=108.08 Aligned_cols=114 Identities=13% Similarity=0.096 Sum_probs=77.0
Q ss_pred CCCccccChhHH----HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC
Q psy1371 118 PLNSVVLDSGVA----DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT 193 (244)
Q Consensus 118 ~~~~v~~~~~~~----~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~ 193 (244)
.++++.+.|+.. ..+++++ ++.+++|+.++|+||||+|||||+++|+|.++|+.|.+.+++....
T Consensus 4 ~~~~l~~~~~~~~~~~~~~l~~v-----------sl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 72 (287)
T PRK13641 4 KFENVDYIYSPGTPMEKKGLDNI-----------SFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHIT 72 (287)
T ss_pred EEEEEEEEcCCCCCccccceeee-----------EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECc
Confidence 355666666421 2477888 8888888889999999999999999999999999999999985442
Q ss_pred -------HHHHHHHhhhcCCCC--ceehhhH-hhhhcc---cCcCcccHHHHHHHHHHhhhc
Q psy1371 194 -------DDRLNHLLSVAPQNS--IILLEDI-DAAFVT---REESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 194 -------~~~~~~~~~~~~q~~--~lf~dei-d~~~~~---r~~~~~~~~~~~~~~l~~~~~ 242 (244)
....++.+++++|++ .++-..+ |++... +........+...+++.++++
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL 134 (287)
T PRK13641 73 PETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGL 134 (287)
T ss_pred cccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 234556788999874 3442233 444321 111222233345666777665
No 204
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.18 E-value=6.1e-12 Score=105.76 Aligned_cols=91 Identities=18% Similarity=0.150 Sum_probs=68.9
Q ss_pred CCccccChhH-HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC---CH
Q psy1371 119 LNSVVLDSGV-ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL---TD 194 (244)
Q Consensus 119 ~~~v~~~~~~-~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~---~~ 194 (244)
++++.+.|+. ...+++++ ++.++.++.++|.||||+|||||+++|+|++.++.|.+.+++... +.
T Consensus 3 ~~~l~~~~~~~~~~~l~~i-----------sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~ 71 (237)
T cd03252 3 FEHVRFRYKPDGPVILDNI-----------SLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADP 71 (237)
T ss_pred EEEEEEecCCCCccceece-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCH
Confidence 4556665532 23467777 788888888999999999999999999999999999999988543 23
Q ss_pred HHHHHHhhhcCCCCceehhhH-hhhhc
Q psy1371 195 DRLNHLLSVAPQNSIILLEDI-DAAFV 220 (244)
Q Consensus 195 ~~~~~~~~~~~q~~~lf~dei-d~~~~ 220 (244)
..+++.+++++|+..+|-.++ |++..
T Consensus 72 ~~~~~~i~~~~q~~~~~~~tv~~nl~~ 98 (237)
T cd03252 72 AWLRRQVGVVLQENVLFNRSIRDNIAL 98 (237)
T ss_pred HHHhhcEEEEcCCchhccchHHHHhhc
Confidence 456677899999876664455 55543
No 205
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.18 E-value=1e-11 Score=106.79 Aligned_cols=91 Identities=16% Similarity=0.203 Sum_probs=73.1
Q ss_pred CCCCccccChhH-HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC---
Q psy1371 117 RPLNSVVLDSGV-ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL--- 192 (244)
Q Consensus 117 ~~~~~v~~~~~~-~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~--- 192 (244)
+.++++.+.|.. ...+++++ ++.+++++.++|+||||+|||||+++|+|++. +.|.+.+++.+.
T Consensus 3 i~~~nls~~~~~~~~~~l~~i-----------sl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~ 70 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENI-----------SFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSV 70 (275)
T ss_pred EEEEEEEEEeCCCCCcceece-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhC
Confidence 456777777632 23478888 88888888999999999999999999999998 789999998544
Q ss_pred CHHHHHHHhhhcCCCCceehhhH-hhhh
Q psy1371 193 TDDRLNHLLSVAPQNSIILLEDI-DAAF 219 (244)
Q Consensus 193 ~~~~~~~~~~~~~q~~~lf~dei-d~~~ 219 (244)
+...+++.+++++|++.+|-.++ |++.
T Consensus 71 ~~~~lr~~i~~v~q~~~lf~~tv~~nl~ 98 (275)
T cd03289 71 PLQKWRKAFGVIPQKVFIFSGTFRKNLD 98 (275)
T ss_pred CHHHHhhhEEEECCCcccchhhHHHHhh
Confidence 34567888999999988886555 5553
No 206
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.18 E-value=8.4e-12 Score=106.38 Aligned_cols=91 Identities=24% Similarity=0.247 Sum_probs=71.1
Q ss_pred CCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH
Q psy1371 115 RRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD 194 (244)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~ 194 (244)
+.+.++++.+.|+. ..+++++ ++.+..++.++|+||||||||||+++|+|.+.++.|.+.+++...
T Consensus 11 ~~l~i~~l~~~~~~-~~il~~i-----------sl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~-- 76 (257)
T PRK11247 11 TPLLLNAVSKRYGE-RTVLNQL-----------DLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPL-- 76 (257)
T ss_pred CcEEEEEEEEEECC-cceeeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEH--
Confidence 44778899888864 3577888 888888888999999999999999999999999999999876433
Q ss_pred HHHHHHhhhcCCCCceeh-hhH-hhhh
Q psy1371 195 DRLNHLLSVAPQNSIILL-EDI-DAAF 219 (244)
Q Consensus 195 ~~~~~~~~~~~q~~~lf~-dei-d~~~ 219 (244)
..+++.+++++|++.++. ..+ |++.
T Consensus 77 ~~~~~~i~~v~q~~~l~~~~tv~enl~ 103 (257)
T PRK11247 77 AEAREDTRLMFQDARLLPWKKVIDNVG 103 (257)
T ss_pred HHhhCceEEEecCccCCCCCcHHHHHH
Confidence 245667889998766553 234 5544
No 207
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.18 E-value=6.4e-12 Score=105.51 Aligned_cols=91 Identities=21% Similarity=0.350 Sum_probs=69.2
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC---CHH
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL---TDD 195 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~---~~~ 195 (244)
++++.+.++....+++++ ++.+++++.++|.||||+|||||+++|+|++.++.|.+.+++... ...
T Consensus 3 ~~~l~~~~~~~~~~l~~i-----------~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~ 71 (236)
T cd03253 3 FENVTFAYDPGRPVLKDV-----------SFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLD 71 (236)
T ss_pred EEEEEEEeCCCCceeeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHH
Confidence 455555553223366777 788888888999999999999999999999999999999988543 234
Q ss_pred HHHHHhhhcCCCCceehhhH-hhhhc
Q psy1371 196 RLNHLLSVAPQNSIILLEDI-DAAFV 220 (244)
Q Consensus 196 ~~~~~~~~~~q~~~lf~dei-d~~~~ 220 (244)
.+++.+++++|++.+|-.++ |++..
T Consensus 72 ~~~~~i~~~~q~~~~~~~tv~~nl~~ 97 (236)
T cd03253 72 SLRRAIGVVPQDTVLFNDTIGYNIRY 97 (236)
T ss_pred HHHhhEEEECCCChhhcchHHHHHhh
Confidence 56777899999877775555 55543
No 208
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.17 E-value=6.6e-12 Score=100.70 Aligned_cols=89 Identities=18% Similarity=0.283 Sum_probs=65.6
Q ss_pred CCccccChhH-HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC---CH
Q psy1371 119 LNSVVLDSGV-ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL---TD 194 (244)
Q Consensus 119 ~~~v~~~~~~-~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~---~~ 194 (244)
++++.+.++. ...+++++ ++.++.++.++|.||||+|||||+++|+|+++++.|.+.+++... ..
T Consensus 3 ~~~l~~~~~~~~~~~l~~~-----------~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~ 71 (173)
T cd03246 3 VENVSFRYPGAEPPVLRNV-----------SFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDP 71 (173)
T ss_pred EEEEEEEcCCCCCcceeee-----------EEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCH
Confidence 3455554432 12356777 777888888999999999999999999999999999999988443 33
Q ss_pred HHHHHHhhhcCCCCceehhhH-hhh
Q psy1371 195 DRLNHLLSVAPQNSIILLEDI-DAA 218 (244)
Q Consensus 195 ~~~~~~~~~~~q~~~lf~dei-d~~ 218 (244)
..+++.+++++|++.++..++ |++
T Consensus 72 ~~~~~~i~~~~q~~~~~~~tv~~~l 96 (173)
T cd03246 72 NELGDHVGYLPQDDELFSGSIAENI 96 (173)
T ss_pred HHHHhheEEECCCCccccCcHHHHC
Confidence 456677888998876664444 443
No 209
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.17 E-value=4.9e-12 Score=101.82 Aligned_cols=95 Identities=18% Similarity=0.172 Sum_probs=73.0
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHH----HHHHhhhcCCCCcee-----hhhHhhh
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDR----LNHLLSVAPQNSIIL-----LEDIDAA 218 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~----~~~~~~~~~q~~~lf-----~deid~~ 218 (244)
++.+..++-++|.||||+||||...++.|+..++.|.+.+++.+++... -|.-++|.||++-+| -|++..+
T Consensus 24 sl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~v 103 (243)
T COG1137 24 SLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAV 103 (243)
T ss_pred eEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHH
Confidence 5666666669999999999999999999999999999999998877533 344489999998888 6888888
Q ss_pred hcccCcCcc--cHHHHHHHHHHhhhc
Q psy1371 219 FVTREESSQ--GLEDIDAAFVTREES 242 (244)
Q Consensus 219 ~~~r~~~~~--~~~~~~~~~l~~~~~ 242 (244)
+..+..... ..+...+++|....+
T Consensus 104 lE~~~~d~~~~~~~~~l~~LL~ef~i 129 (243)
T COG1137 104 LEIREKDLKKAERKEELDALLEEFHI 129 (243)
T ss_pred HhhhhcchhHHHHHHHHHHHHHHhch
Confidence 777664444 223335566666554
No 210
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.17 E-value=1.1e-11 Score=106.05 Aligned_cols=84 Identities=18% Similarity=0.174 Sum_probs=67.9
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC---
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL--- 192 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~--- 192 (244)
.+.++++.+.++. ..+++++ ++.+.+++.++|+||||||||||+++|+|+++++.|.+.+++.+.
T Consensus 11 ~l~i~~l~~~~~~-~~il~~v-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~ 78 (265)
T PRK10575 11 TFALRNVSFRVPG-RTLLHPL-----------SLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESW 78 (265)
T ss_pred eEEEeeEEEEECC-EEEEeee-----------eeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhC
Confidence 4678888888754 3577888 888888888999999999999999999999999999999988543
Q ss_pred CHHHHHHHhhhcCCCCcee
Q psy1371 193 TDDRLNHLLSVAPQNSIIL 211 (244)
Q Consensus 193 ~~~~~~~~~~~~~q~~~lf 211 (244)
....+++.+++++|+..++
T Consensus 79 ~~~~~~~~i~~v~q~~~~~ 97 (265)
T PRK10575 79 SSKAFARKVAYLPQQLPAA 97 (265)
T ss_pred CHHHHhhheEEeccCCCCC
Confidence 3345667789999875443
No 211
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.17 E-value=6.6e-12 Score=103.22 Aligned_cols=81 Identities=25% Similarity=0.315 Sum_probs=63.8
Q ss_pred CCccccChhHH----HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH
Q psy1371 119 LNSVVLDSGVA----DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD 194 (244)
Q Consensus 119 ~~~v~~~~~~~----~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~ 194 (244)
+++|.+.++.+ ..+++++ ++.+++++-++|.||||||||||+++|+|+++++.|.+.+++
T Consensus 3 ~~~l~~~~~~~~~~~~~il~~~-----------s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g----- 66 (204)
T cd03250 3 VEDASFTWDSGEQETSFTLKDI-----------NLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG----- 66 (204)
T ss_pred EeEEEEecCCCCccccceeeee-----------eEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-----
Confidence 56666666543 2477888 888888888999999999999999999999999999999887
Q ss_pred HHHHHHhhhcCCCCceehhhH-hhhhc
Q psy1371 195 DRLNHLLSVAPQNSIILLEDI-DAAFV 220 (244)
Q Consensus 195 ~~~~~~~~~~~q~~~lf~dei-d~~~~ 220 (244)
.+++++|++.++-..+ |++..
T Consensus 67 -----~i~~~~q~~~l~~~t~~enl~~ 88 (204)
T cd03250 67 -----SIAYVSQEPWIQNGTIRENILF 88 (204)
T ss_pred -----EEEEEecCchhccCcHHHHhcc
Confidence 4677787766664454 55544
No 212
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.17 E-value=4.3e-11 Score=96.51 Aligned_cols=111 Identities=13% Similarity=0.058 Sum_probs=78.2
Q ss_pred CccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC--HHHH
Q psy1371 120 NSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT--DDRL 197 (244)
Q Consensus 120 ~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~--~~~~ 197 (244)
.+++-+|+...+.++++ +|....|+-+++.||||+||||++|.|+.++.|+.|.+.+++.+.. ...+
T Consensus 5 ~~l~K~y~~~v~AvrdV-----------SF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~v 73 (245)
T COG4555 5 TDLTKSYGSKVQAVRDV-----------SFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFV 73 (245)
T ss_pred eehhhhccCHHhhhhhe-----------eEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHH
Confidence 34444555556677888 6666666777999999999999999999999999999999985543 3467
Q ss_pred HHHhhhcCCCCcee-----hhhHhhhhcccCcCcccHHHHHHHHHHhhh
Q psy1371 198 NHLLSVAPQNSIIL-----LEDIDAAFVTREESSQGLEDIDAAFVTREE 241 (244)
Q Consensus 198 ~~~~~~~~q~~~lf-----~deid~~~~~r~~~~~~~~~~~~~~l~~~~ 241 (244)
|+.++..+..+-++ -+++.+++.-.+-+....++..+.+..+++
T Consensus 74 rr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~ 122 (245)
T COG4555 74 RRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQ 122 (245)
T ss_pred hhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhC
Confidence 88888888554444 455555555544444444555555555444
No 213
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.17 E-value=3.4e-12 Score=113.46 Aligned_cols=113 Identities=14% Similarity=0.219 Sum_probs=77.3
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH-HHH
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD-DRL 197 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~-~~~ 197 (244)
++++...|+. ..+++++ ++.+..++.++|+||||||||||+++|+|++.++.|.+.+++.+... ...
T Consensus 5 i~~l~~~~~~-~~~l~~i-----------sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~ 72 (353)
T PRK10851 5 IANIKKSFGR-TQVLNDI-----------SLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHAR 72 (353)
T ss_pred EEEEEEEeCC-eEEEEEe-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHH
Confidence 4556655543 2356777 77788888899999999999999999999999999999999855432 123
Q ss_pred HHHhhhcCCCCceeh-hhH-hhhhccc-------CcCcccHHHHHHHHHHhhhcC
Q psy1371 198 NHLLSVAPQNSIILL-EDI-DAAFVTR-------EESSQGLEDIDAAFVTREESS 243 (244)
Q Consensus 198 ~~~~~~~~q~~~lf~-dei-d~~~~~r-------~~~~~~~~~~~~~~l~~~~~~ 243 (244)
++.+++++|+..+|. -++ |++.... .......++....+++++++.
T Consensus 73 ~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~ 127 (353)
T PRK10851 73 DRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLA 127 (353)
T ss_pred HCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCc
Confidence 456899999877763 133 5554321 112223344556677777653
No 214
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.17 E-value=7.3e-12 Score=112.92 Aligned_cols=115 Identities=15% Similarity=0.225 Sum_probs=80.9
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC---C
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL---T 193 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~---~ 193 (244)
+.++++.+.|+. ..+++++ ++.+++++-++|+||||+|||||+|+|+|++.+..|.+.+++... +
T Consensus 4 L~~~nls~~y~~-~~vL~~v-----------s~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~ 71 (402)
T PRK09536 4 IDVSDLSVEFGD-TTVLDGV-----------DLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS 71 (402)
T ss_pred EEEeeEEEEECC-EEEEEee-----------EEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCC
Confidence 346677777754 3577888 888888888999999999999999999999999999999998543 3
Q ss_pred HHHHHHHhhhcCCCCceeh-hhH-hhhhcccCc-----C--cccHHHHHHHHHHhhhcC
Q psy1371 194 DDRLNHLLSVAPQNSIILL-EDI-DAAFVTREE-----S--SQGLEDIDAAFVTREESS 243 (244)
Q Consensus 194 ~~~~~~~~~~~~q~~~lf~-dei-d~~~~~r~~-----~--~~~~~~~~~~~l~~~~~~ 243 (244)
...+++.+++++|+..++. -.+ |++...|.. . .....+....+++++++.
T Consensus 72 ~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~ 130 (402)
T PRK09536 72 ARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVA 130 (402)
T ss_pred HHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCc
Confidence 4567778999998766542 122 444332210 1 122334456677777653
No 215
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.17 E-value=1.6e-11 Score=104.27 Aligned_cols=83 Identities=20% Similarity=0.320 Sum_probs=65.5
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCC-----eEEEEeCCCC
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFG-----ICVLNLSERG 191 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~-----~g~i~~~~~~ 191 (244)
+.++++.+.|+. ..+++++ ++.+.+++.++|.||||+|||||+++|+|.+.++ .|.+.+++.+
T Consensus 5 l~~~~l~~~~~~-~~~l~~i-----------s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~ 72 (253)
T PRK14267 5 IETVNLRVYYGS-NHVIKGV-----------DLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRN 72 (253)
T ss_pred EEEEeEEEEeCC-eeeeecc-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEE
Confidence 456777777654 3477888 7888888889999999999999999999999874 8999998854
Q ss_pred CC-----HHHHHHHhhhcCCCCcee
Q psy1371 192 LT-----DDRLNHLLSVAPQNSIIL 211 (244)
Q Consensus 192 ~~-----~~~~~~~~~~~~q~~~lf 211 (244)
.. ...+++.+++++|++.+|
T Consensus 73 i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (253)
T PRK14267 73 IYSPDVDPIEVRREVGMVFQYPNPF 97 (253)
T ss_pred ccccccChHHHhhceeEEecCCccC
Confidence 42 234567789999876665
No 216
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.16 E-value=1.1e-11 Score=106.40 Aligned_cols=92 Identities=18% Similarity=0.218 Sum_probs=71.3
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC-----CCeEEEEeCCC
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE-----FGICVLNLSER 190 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~-----~~~g~i~~~~~ 190 (244)
.+.++++.+.|+. ..+++++ ++.++.++.++|+||||||||||+++|+|.+. ++.|.+.+++.
T Consensus 13 ~l~i~nl~~~~~~-~~il~~i-----------s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~ 80 (269)
T PRK14259 13 IISLQNVTISYGT-FEAVKNV-----------FCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGT 80 (269)
T ss_pred eEEEEeEEEEECC-EEEEcce-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCE
Confidence 3667888887754 3467888 88888888899999999999999999999987 57899999885
Q ss_pred CC-----CHHHHHHHhhhcCCCCceehhhH-hhhh
Q psy1371 191 GL-----TDDRLNHLLSVAPQNSIILLEDI-DAAF 219 (244)
Q Consensus 191 ~~-----~~~~~~~~~~~~~q~~~lf~dei-d~~~ 219 (244)
+. ....+++.+++++|+..+|-..+ |++.
T Consensus 81 ~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~ 115 (269)
T PRK14259 81 DLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIA 115 (269)
T ss_pred EcccccCCHHHHhhceEEEccCCccchhhHHHHHh
Confidence 43 23456677899999877664454 5543
No 217
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.16 E-value=9.7e-12 Score=104.85 Aligned_cols=82 Identities=15% Similarity=0.199 Sum_probs=63.6
Q ss_pred CCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---H
Q psy1371 118 PLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT---D 194 (244)
Q Consensus 118 ~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~---~ 194 (244)
.++++.+.++. ..+++++ ++.+.+++.++|.||||+|||||+++|+|.+.++.|.+.+++.... .
T Consensus 4 ~~~~l~~~~~~-~~~l~~v-----------s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~ 71 (242)
T TIGR03411 4 YLEGLSVSFDG-FKALNDL-----------SLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPE 71 (242)
T ss_pred EEEeeEEEcCC-eEEeeee-----------eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCH
Confidence 45666666643 2467777 7888888889999999999999999999999999999999985442 2
Q ss_pred HH-HHHHhhhcCCCCcee
Q psy1371 195 DR-LNHLLSVAPQNSIIL 211 (244)
Q Consensus 195 ~~-~~~~~~~~~q~~~lf 211 (244)
.. .++.+++++|+..++
T Consensus 72 ~~~~~~~i~~~~q~~~~~ 89 (242)
T TIGR03411 72 HQIARAGIGRKFQKPTVF 89 (242)
T ss_pred HHHHhcCeeEeccccccC
Confidence 22 334588889877666
No 218
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.16 E-value=1.4e-11 Score=105.01 Aligned_cols=83 Identities=19% Similarity=0.227 Sum_probs=64.9
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC-----CeEEEEeCCCC
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF-----GICVLNLSERG 191 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~-----~~g~i~~~~~~ 191 (244)
+.++++.+.|+.. .+++++ ++.+.+++.++|+||||||||||+++|+|.+.+ +.|.+.+++.+
T Consensus 5 l~i~~v~~~~~~~-~~l~~i-----------sl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~ 72 (258)
T PRK14241 5 IDVKDLNIYYGSF-HAVEDV-----------NLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGED 72 (258)
T ss_pred EEEeeEEEEECCE-eeeeee-----------eEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEe
Confidence 4567777776542 467888 788888888999999999999999999999874 58999998854
Q ss_pred CC-----HHHHHHHhhhcCCCCcee
Q psy1371 192 LT-----DDRLNHLLSVAPQNSIIL 211 (244)
Q Consensus 192 ~~-----~~~~~~~~~~~~q~~~lf 211 (244)
.. ...+++.+++++|+..++
T Consensus 73 ~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (258)
T PRK14241 73 LYGPGVDPVAVRRTIGMVFQRPNPF 97 (258)
T ss_pred ccccccChHHHhcceEEEccccccC
Confidence 32 235667789999876555
No 219
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.16 E-value=9.5e-12 Score=106.06 Aligned_cols=92 Identities=24% Similarity=0.303 Sum_probs=71.2
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC-----CeEEEEeCCC
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF-----GICVLNLSER 190 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~-----~~g~i~~~~~ 190 (244)
-+.++++.+.|+.+ .+++++ ++.+++++.++|+||||+|||||+++|+|.+.+ +.|.+.+++.
T Consensus 12 ~l~i~~l~~~~~~~-~~l~~v-----------s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~ 79 (259)
T PRK14274 12 VYQINGMNLWYGQH-HALKNI-----------NLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGS 79 (259)
T ss_pred eEEEeeEEEEECCe-eeEEee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCE
Confidence 36788888887543 477888 888888888999999999999999999999873 4799999885
Q ss_pred CCC-----HHHHHHHhhhcCCCCceehhhH-hhhh
Q psy1371 191 GLT-----DDRLNHLLSVAPQNSIILLEDI-DAAF 219 (244)
Q Consensus 191 ~~~-----~~~~~~~~~~~~q~~~lf~dei-d~~~ 219 (244)
... ...+++.+++++|++.+|.+.+ |++.
T Consensus 80 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~ 114 (259)
T PRK14274 80 NILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVA 114 (259)
T ss_pred EccccccCHHHHhhceEEEecCCcccccCHHHHHH
Confidence 442 2355677899999876664455 5553
No 220
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.15 E-value=2.3e-11 Score=103.14 Aligned_cols=83 Identities=18% Similarity=0.230 Sum_probs=64.2
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC-----CeEEEEeCCCC
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF-----GICVLNLSERG 191 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~-----~~g~i~~~~~~ 191 (244)
+.++++.+.++. ..+++++ ++.+++++.++|+||||||||||+++|+|.+.+ +.|.+.+++..
T Consensus 4 l~~~~l~~~~~~-~~~l~~i-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~ 71 (250)
T PRK14247 4 IEIRDLKVSFGQ-VEVLDGV-----------NLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQD 71 (250)
T ss_pred EEEEeeEEEECC-eeeeecc-----------eeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEE
Confidence 345667666643 2467888 788888888999999999999999999999874 58999998854
Q ss_pred C---CHHHHHHHhhhcCCCCcee
Q psy1371 192 L---TDDRLNHLLSVAPQNSIIL 211 (244)
Q Consensus 192 ~---~~~~~~~~~~~~~q~~~lf 211 (244)
. +...+++.+++++|++.++
T Consensus 72 i~~~~~~~~~~~i~~v~q~~~~~ 94 (250)
T PRK14247 72 IFKMDVIELRRRVQMVFQIPNPI 94 (250)
T ss_pred CCcCCHHHHhccEEEEeccCccC
Confidence 3 3345667789999876544
No 221
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.15 E-value=7.7e-12 Score=102.91 Aligned_cols=81 Identities=15% Similarity=0.144 Sum_probs=61.0
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC--HHH
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT--DDR 196 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~--~~~ 196 (244)
++++.+.++. ..+++++ ++.++.++.++|.||||||||||+++|+|.++++.|.+.+++.... ...
T Consensus 4 ~~~l~~~~~~-~~~l~~v-----------s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~ 71 (204)
T PRK13538 4 ARNLACERDE-RILFSGL-----------SFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDE 71 (204)
T ss_pred EEEEEEEECC-EEEEecc-----------eEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHH
Confidence 3455555433 2366777 7888888889999999999999999999999999999999885432 234
Q ss_pred HHHHhhhcCCCCcee
Q psy1371 197 LNHLLSVAPQNSIIL 211 (244)
Q Consensus 197 ~~~~~~~~~q~~~lf 211 (244)
.++.+++++|...++
T Consensus 72 ~~~~~~~~~~~~~~~ 86 (204)
T PRK13538 72 YHQDLLYLGHQPGIK 86 (204)
T ss_pred hhhheEEeCCccccC
Confidence 556678888765444
No 222
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.15 E-value=1.4e-11 Score=101.80 Aligned_cols=72 Identities=17% Similarity=0.160 Sum_probs=56.5
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH-HHHHHHhhhcCCCCceehh-hH-hhhh
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD-DRLNHLLSVAPQNSIILLE-DI-DAAF 219 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~-~~~~~~~~~~~q~~~lf~d-ei-d~~~ 219 (244)
++.+.+++.++|.||||+|||||+++|+|+++++.|.+.+++.+... ...++.+++++|++.+|.+ .+ |++.
T Consensus 18 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 77888888899999999999999999999999999999998854322 1234568899988766532 44 5554
No 223
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.15 E-value=1.7e-11 Score=105.92 Aligned_cols=81 Identities=22% Similarity=0.178 Sum_probs=64.3
Q ss_pred CCCCccccChhH-HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCe---EEEEeCCCCC
Q psy1371 117 RPLNSVVLDSGV-ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGI---CVLNLSERGL 192 (244)
Q Consensus 117 ~~~~~v~~~~~~-~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~---g~i~~~~~~~ 192 (244)
++++++.+.|+. ...+++++ ++.+++++.++|+||||||||||+++|+|.+.++. |.+.+++...
T Consensus 6 l~i~~l~~~~~~~~~~~l~~v-----------~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~ 74 (282)
T PRK13640 6 VEFKHVSFTYPDSKKPALNDI-----------SFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITL 74 (282)
T ss_pred EEEEEEEEEcCCCCccceeeE-----------EEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEEC
Confidence 456777777643 22477888 88888888899999999999999999999999887 8999988554
Q ss_pred C---HHHHHHHhhhcCCCC
Q psy1371 193 T---DDRLNHLLSVAPQNS 208 (244)
Q Consensus 193 ~---~~~~~~~~~~~~q~~ 208 (244)
. ...+++.+++++|++
T Consensus 75 ~~~~~~~~~~~ig~v~q~~ 93 (282)
T PRK13640 75 TAKTVWDIREKVGIVFQNP 93 (282)
T ss_pred CcCCHHHHHhheEEEEECH
Confidence 3 234667789999875
No 224
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.15 E-value=1.4e-11 Score=105.58 Aligned_cols=91 Identities=19% Similarity=0.231 Sum_probs=70.5
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC-----CCeEEEEeCCCC
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE-----FGICVLNLSERG 191 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~-----~~~g~i~~~~~~ 191 (244)
+.++++.+.|+. ..+++++ ++.+.+|+.++|+||||+|||||+++|+|+.. ++.|.+.+++..
T Consensus 22 l~~~~l~~~~~~-~~il~~v-----------sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~ 89 (268)
T PRK14248 22 LEVKDLSIYYGE-KRAVNDI-----------SMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLN 89 (268)
T ss_pred EEEEEEEEEeCC-ceeeece-----------EEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEE
Confidence 678888888754 3577888 88888888899999999999999999999864 578999998854
Q ss_pred CC-----HHHHHHHhhhcCCCCceehhhH-hhhh
Q psy1371 192 LT-----DDRLNHLLSVAPQNSIILLEDI-DAAF 219 (244)
Q Consensus 192 ~~-----~~~~~~~~~~~~q~~~lf~dei-d~~~ 219 (244)
.. ...+++.+++++|++.+|...+ |++.
T Consensus 90 i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~ 123 (268)
T PRK14248 90 ILDSNINVVNLRREIGMVFQKPNPFPKSIYNNIT 123 (268)
T ss_pred cccccccHHHHhccEEEEecCCccCcccHHHHHH
Confidence 42 1245667899999877664444 5543
No 225
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.15 E-value=6.2e-12 Score=100.87 Aligned_cols=82 Identities=18% Similarity=0.318 Sum_probs=62.6
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH--HH
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD--DR 196 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~--~~ 196 (244)
++++.+.++.. .+++++ ++.+++++.++|+||||||||||+++|+|.+.++.|.+.+++..... ..
T Consensus 3 ~~~l~~~~~~~-~~l~~~-----------~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~ 70 (173)
T cd03230 3 VRNLSKRYGKK-TALDDI-----------SLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEE 70 (173)
T ss_pred EEEEEEEECCe-eeeeee-----------EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHh
Confidence 34555544332 366777 78888888899999999999999999999999999999998854332 34
Q ss_pred HHHHhhhcCCCCceeh
Q psy1371 197 LNHLLSVAPQNSIILL 212 (244)
Q Consensus 197 ~~~~~~~~~q~~~lf~ 212 (244)
+++.+++++|+..++.
T Consensus 71 ~~~~i~~~~q~~~~~~ 86 (173)
T cd03230 71 VKRRIGYLPEEPSLYE 86 (173)
T ss_pred hhccEEEEecCCcccc
Confidence 5667888898766553
No 226
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.15 E-value=8.5e-12 Score=108.09 Aligned_cols=82 Identities=16% Similarity=0.129 Sum_probs=64.9
Q ss_pred CCCCCccccChhHH----HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCC
Q psy1371 116 RRPLNSVVLDSGVA----DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERG 191 (244)
Q Consensus 116 ~~~~~~v~~~~~~~----~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~ 191 (244)
.+.++++.+.|+.+ ..+++++ ++.+.+++.++|+||||||||||+++|+|++.++.|.+.+++.+
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~i-----------s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 74 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNT-----------SLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYA 74 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeee-----------EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence 35577777776532 1377888 88888888899999999999999999999999999999998854
Q ss_pred CC--------HHHHHHHhhhcCCCC
Q psy1371 192 LT--------DDRLNHLLSVAPQNS 208 (244)
Q Consensus 192 ~~--------~~~~~~~~~~~~q~~ 208 (244)
.. ...+++.+++++|++
T Consensus 75 i~~~~~~~~~~~~~~~~i~~v~q~~ 99 (289)
T PRK13645 75 IPANLKKIKEVKRLRKEIGLVFQFP 99 (289)
T ss_pred ccccccccccHHHHhccEEEEEeCc
Confidence 31 234566788999875
No 227
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.15 E-value=7.2e-12 Score=107.35 Aligned_cols=93 Identities=22% Similarity=0.270 Sum_probs=71.7
Q ss_pred CCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC-----CeEEEEeCC
Q psy1371 115 RRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF-----GICVLNLSE 189 (244)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~-----~~g~i~~~~ 189 (244)
+.+.++++.+.|+. ..+++++ ++.+++|+.++|+||||+|||||+++|+|++.+ +.|.+.+++
T Consensus 18 ~~l~~~nl~~~~~~-~~il~~i-----------sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 18 IKMRARDVSVFYGE-KQALFDV-----------DLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred ceEEEEeEEEEECC-EEEEEEE-----------EEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 35678888888754 3467888 888888888999999999999999999999874 789999988
Q ss_pred CCCC-----HHHHHHHhhhcCCCCceehhhH-hhhh
Q psy1371 190 RGLT-----DDRLNHLLSVAPQNSIILLEDI-DAAF 219 (244)
Q Consensus 190 ~~~~-----~~~~~~~~~~~~q~~~lf~dei-d~~~ 219 (244)
.... ...+++.+++++|.+.+|...+ |++.
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~ 121 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVA 121 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCCCcHHHHHH
Confidence 5442 2345677899998766664444 5443
No 228
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.14 E-value=8.9e-12 Score=106.89 Aligned_cols=84 Identities=15% Similarity=0.293 Sum_probs=66.0
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT--- 193 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~--- 193 (244)
+.++++.+.|+. ..+++++ ++.++.++.++|+||||||||||+++|+|++.++.|.+.+++....
T Consensus 8 l~~~~l~~~~~~-~~il~~v-----------sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~ 75 (269)
T PRK11831 8 VDMRGVSFTRGN-RCIFDNI-----------SLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMS 75 (269)
T ss_pred EEEeCeEEEECC-EEEEeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccC
Confidence 567788877753 2467777 8888888889999999999999999999999999999999885432
Q ss_pred H---HHHHHHhhhcCCCCceeh
Q psy1371 194 D---DRLNHLLSVAPQNSIILL 212 (244)
Q Consensus 194 ~---~~~~~~~~~~~q~~~lf~ 212 (244)
. ..+++.+++++|+..++.
T Consensus 76 ~~~~~~~~~~i~~v~q~~~~~~ 97 (269)
T PRK11831 76 RSRLYTVRKRMSMLFQSGALFT 97 (269)
T ss_pred hhhHHHHhhcEEEEecccccCC
Confidence 2 124566889998866653
No 229
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.14 E-value=1.5e-11 Score=104.63 Aligned_cols=82 Identities=26% Similarity=0.456 Sum_probs=64.2
Q ss_pred CCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC---CH
Q psy1371 118 PLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL---TD 194 (244)
Q Consensus 118 ~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~---~~ 194 (244)
.++++.+.|+. ..+++++ ++.+.+++.++|+||||+|||||+++|+|++.++.|.+.+++... +.
T Consensus 4 ~~~~l~~~~~~-~~il~~i-----------s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~ 71 (255)
T PRK11231 4 RTENLTVGYGT-KRILNDL-----------SLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSS 71 (255)
T ss_pred EEEeEEEEECC-EEEEeee-----------eeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCH
Confidence 35566666643 3467777 777888888999999999999999999999999999999988543 23
Q ss_pred HHHHHHhhhcCCCCcee
Q psy1371 195 DRLNHLLSVAPQNSIIL 211 (244)
Q Consensus 195 ~~~~~~~~~~~q~~~lf 211 (244)
..+++.+++++|+..++
T Consensus 72 ~~~~~~i~~~~q~~~~~ 88 (255)
T PRK11231 72 RQLARRLALLPQHHLTP 88 (255)
T ss_pred HHHhhheEEecccCCCC
Confidence 45566789999876555
No 230
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.14 E-value=9.5e-12 Score=104.75 Aligned_cols=81 Identities=20% Similarity=0.284 Sum_probs=63.6
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH-HHH
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD-DRL 197 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~-~~~ 197 (244)
++++.+.|+. ..+++++ ++.+.+++.++|.||||+|||||+++|+|.+.++.|.+.+++..... ...
T Consensus 3 i~~l~~~~~~-~~il~~i-----------s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~ 70 (237)
T TIGR00968 3 IANISKRFGS-FQALDDV-----------NLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR 70 (237)
T ss_pred EEEEEEEECC-eeeeeeE-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChh
Confidence 4566666653 2477888 78888888899999999999999999999999999999998854332 123
Q ss_pred HHHhhhcCCCCcee
Q psy1371 198 NHLLSVAPQNSIIL 211 (244)
Q Consensus 198 ~~~~~~~~q~~~lf 211 (244)
++.+++++|.+.+|
T Consensus 71 ~~~i~~~~q~~~~~ 84 (237)
T TIGR00968 71 DRKIGFVFQHYALF 84 (237)
T ss_pred hcCEEEEecChhhc
Confidence 56688899876665
No 231
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.14 E-value=4.4e-12 Score=104.28 Aligned_cols=84 Identities=17% Similarity=0.217 Sum_probs=66.1
Q ss_pred CCCCccccChhH---HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC---CCeEEEEeCCC
Q psy1371 117 RPLNSVVLDSGV---ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE---FGICVLNLSER 190 (244)
Q Consensus 117 ~~~~~v~~~~~~---~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~---~~~g~i~~~~~ 190 (244)
.+|+|+.|.|+. ...+++++ ++.+++++.++|+||||||||||+++|+|.+. ++.|.+.+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~il~~~-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~ 72 (202)
T cd03233 4 LSWRNISFTTGKGRSKIPILKDF-----------SGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGI 72 (202)
T ss_pred EEEEccEEEeccCCCCceeeeeE-----------EEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCE
Confidence 357788888753 23577777 78888888899999999999999999999998 88999999885
Q ss_pred CCCH--HHHHHHhhhcCCCCcee
Q psy1371 191 GLTD--DRLNHLLSVAPQNSIIL 211 (244)
Q Consensus 191 ~~~~--~~~~~~~~~~~q~~~lf 211 (244)
+... ...++.+++++|+..++
T Consensus 73 ~~~~~~~~~~~~i~~~~q~~~~~ 95 (202)
T cd03233 73 PYKEFAEKYPGEIIYVSEEDVHF 95 (202)
T ss_pred ECccchhhhcceEEEEecccccC
Confidence 4432 24556688889876555
No 232
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.14 E-value=1.9e-11 Score=101.23 Aligned_cols=72 Identities=18% Similarity=0.268 Sum_probs=57.1
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH-HHHHHHhhhcCCCCceehh-hH-hhhh
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD-DRLNHLLSVAPQNSIILLE-DI-DAAF 219 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~-~~~~~~~~~~~q~~~lf~d-ei-d~~~ 219 (244)
++.+.+++.++|.||||+|||||+++|+|++.++.|.+.+++.+... ...++.+++++|++.+|.. ++ |++.
T Consensus 18 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~ 92 (213)
T TIGR01277 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIG 92 (213)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHH
Confidence 77888888899999999999999999999999999999998854432 2345678899988766632 44 5543
No 233
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.14 E-value=1.4e-11 Score=103.67 Aligned_cols=91 Identities=19% Similarity=0.244 Sum_probs=67.7
Q ss_pred CCccccChhH--HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC---C
Q psy1371 119 LNSVVLDSGV--ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL---T 193 (244)
Q Consensus 119 ~~~v~~~~~~--~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~---~ 193 (244)
++++.+.++. ...+++++ ++.+++|+-++|+||||||||||+++|+|.+.++.|.+.+++... +
T Consensus 3 i~~l~~~~~~~~~~~~l~~i-----------~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~ 71 (238)
T cd03249 3 FKNVSFRYPSRPDVPILKGL-----------SLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLN 71 (238)
T ss_pred EEEEEEecCCCCCccceece-----------EEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcC
Confidence 4455555432 12467777 888888888999999999999999999999999999999988543 2
Q ss_pred HHHHHHHhhhcCCCCceehhhH-hhhhc
Q psy1371 194 DDRLNHLLSVAPQNSIILLEDI-DAAFV 220 (244)
Q Consensus 194 ~~~~~~~~~~~~q~~~lf~dei-d~~~~ 220 (244)
...+++.+++++|++.++-..+ |++..
T Consensus 72 ~~~~~~~i~~~~q~~~~~~~tv~e~l~~ 99 (238)
T cd03249 72 LRWLRSQIGLVSQEPVLFDGTIAENIRY 99 (238)
T ss_pred HHHHHhhEEEECCchhhhhhhHHHHhhc
Confidence 3345667899998876664455 55543
No 234
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.14 E-value=1.7e-11 Score=97.71 Aligned_cols=74 Identities=30% Similarity=0.406 Sum_probs=56.6
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHHHH
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRLN 198 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~~~ 198 (244)
++++.+.|+....+++++ ++.+.+++.+++.||||||||||+++|+|+++++.|.+.+++.
T Consensus 3 ~~~~~~~~~~~~~~l~~i-----------~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-------- 63 (166)
T cd03223 3 LENLSLATPDGRVLLKDL-----------SFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-------- 63 (166)
T ss_pred EEEEEEEcCCCCeeeecC-----------eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC--------
Confidence 455665553223466777 7888888889999999999999999999999999999988752
Q ss_pred HHhhhcCCCCcee
Q psy1371 199 HLLSVAPQNSIIL 211 (244)
Q Consensus 199 ~~~~~~~q~~~lf 211 (244)
+.+++++|+..++
T Consensus 64 ~~i~~~~q~~~~~ 76 (166)
T cd03223 64 EDLLFLPQRPYLP 76 (166)
T ss_pred ceEEEECCCCccc
Confidence 3466677665444
No 235
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.14 E-value=1.4e-11 Score=102.89 Aligned_cols=94 Identities=17% Similarity=0.210 Sum_probs=73.4
Q ss_pred CCCCCCccccChhHH--HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC
Q psy1371 115 RRRPLNSVVLDSGVA--DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL 192 (244)
Q Consensus 115 ~~~~~~~v~~~~~~~--~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~ 192 (244)
+.+.++++.+.|+.. ..+++++ ++.++.++.++|.||||+|||||+++|+|+++++.|.+.+++...
T Consensus 10 ~~l~~~~l~~~~~~~~~~~~l~~i-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 78 (226)
T cd03248 10 GIVKFQNVTFAYPTRPDTLVLQDV-----------SFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPI 78 (226)
T ss_pred ceEEEEEEEEEeCCCCCCccccce-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCch
Confidence 346678888877532 2478888 888888888999999999999999999999999999999988644
Q ss_pred C---HHHHHHHhhhcCCCCceehhhH-hhhh
Q psy1371 193 T---DDRLNHLLSVAPQNSIILLEDI-DAAF 219 (244)
Q Consensus 193 ~---~~~~~~~~~~~~q~~~lf~dei-d~~~ 219 (244)
. ...+++.+++++|++.+|-.++ |++.
T Consensus 79 ~~~~~~~~~~~i~~~~q~~~l~~~tv~~nl~ 109 (226)
T cd03248 79 SQYEHKYLHSKVSLVGQEPVLFARSLQDNIA 109 (226)
T ss_pred HHcCHHHHHhhEEEEecccHHHhhhHHHHhc
Confidence 2 2345677899999877665555 5554
No 236
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.13 E-value=1.7e-11 Score=103.11 Aligned_cols=83 Identities=16% Similarity=0.278 Sum_probs=66.2
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT--- 193 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~--- 193 (244)
+.++++.+.|+. ..+++++ ++.+.+|+.++|+||||+|||||+++|+|.+.++.|.+.+++....
T Consensus 6 l~~~~l~~~~~~-~~~l~~v-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~ 73 (237)
T PRK11614 6 LSFDKVSAHYGK-IQALHEV-----------SLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQ 73 (237)
T ss_pred EEEEeEEEeeCC-ceeeeee-----------EEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCC
Confidence 456777777653 3477888 8888888889999999999999999999999999999999885432
Q ss_pred HH-HHHHHhhhcCCCCcee
Q psy1371 194 DD-RLNHLLSVAPQNSIIL 211 (244)
Q Consensus 194 ~~-~~~~~~~~~~q~~~lf 211 (244)
.. ..++.+++++|+..+|
T Consensus 74 ~~~~~~~~i~~~~q~~~~~ 92 (237)
T PRK11614 74 TAKIMREAVAIVPEGRRVF 92 (237)
T ss_pred HHHHHHhCEEEeccCcccC
Confidence 22 3456788999876655
No 237
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.13 E-value=2.4e-11 Score=103.53 Aligned_cols=91 Identities=22% Similarity=0.277 Sum_probs=69.4
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC-----CeEEEEeCCC
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF-----GICVLNLSER 190 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~-----~~g~i~~~~~ 190 (244)
.+.++++.+.|+. ..+++++ ++.+++|+.++|.||||+|||||+++|+|++.+ +.|.+.+++.
T Consensus 12 ~l~~~~l~~~~~~-~~il~~v-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~ 79 (258)
T PRK14268 12 QIKVENLNLWYGE-KQALKNV-----------SMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGE 79 (258)
T ss_pred eEEEeeeEEEeCC-eeeeeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCE
Confidence 3667888887753 3477888 888888888999999999999999999999874 6899999885
Q ss_pred CCC-----HHHHHHHhhhcCCCCceehhhH-hhh
Q psy1371 191 GLT-----DDRLNHLLSVAPQNSIILLEDI-DAA 218 (244)
Q Consensus 191 ~~~-----~~~~~~~~~~~~q~~~lf~dei-d~~ 218 (244)
... ...+++.+++++|...+|..++ |++
T Consensus 80 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl 113 (258)
T PRK14268 80 DIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNV 113 (258)
T ss_pred EcccccchHHHHhhhEEEEecCCccCcccHHHHH
Confidence 432 2345677899998766553333 444
No 238
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.13 E-value=1.7e-11 Score=101.05 Aligned_cols=81 Identities=15% Similarity=0.240 Sum_probs=62.2
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHHHH
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRLN 198 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~~~ 198 (244)
++++.+.|+. ..+++++ ++.++.++.++|+||||||||||+++|+|.+.++.|.+.+++.......++
T Consensus 5 ~~~l~~~~~~-~~~l~~i-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~ 72 (207)
T PRK13539 5 GEDLACVRGG-RVLFSGL-----------SFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVA 72 (207)
T ss_pred EEeEEEEECC-eEEEece-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhH
Confidence 4566665543 2466777 888888888999999999999999999999999999999988544322367
Q ss_pred HHhhhcCCCCcee
Q psy1371 199 HLLSVAPQNSIIL 211 (244)
Q Consensus 199 ~~~~~~~q~~~lf 211 (244)
+.+++++|...++
T Consensus 73 ~~~~~~~~~~~~~ 85 (207)
T PRK13539 73 EACHYLGHRNAMK 85 (207)
T ss_pred hhcEEecCCCcCC
Confidence 7788888654443
No 239
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.13 E-value=1.3e-11 Score=101.76 Aligned_cols=91 Identities=18% Similarity=0.230 Sum_probs=70.9
Q ss_pred CCCCccccChhHH-HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC---
Q psy1371 117 RPLNSVVLDSGVA-DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL--- 192 (244)
Q Consensus 117 ~~~~~v~~~~~~~-~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~--- 192 (244)
+.++++.+.++.. ..+++++ ++.++.++.++|.||||||||||+++|+|++.++.|.+.+++...
T Consensus 7 l~~~~l~~~~~~~~~~~l~~i-----------sl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~ 75 (207)
T cd03369 7 IEVENLSVRYAPDLPPVLKNV-----------SFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTI 75 (207)
T ss_pred EEEEEEEEEeCCCCcccccCc-----------eEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHC
Confidence 5567777776431 2477888 888888888999999999999999999999999999999988543
Q ss_pred CHHHHHHHhhhcCCCCceehhhH-hhh
Q psy1371 193 TDDRLNHLLSVAPQNSIILLEDI-DAA 218 (244)
Q Consensus 193 ~~~~~~~~~~~~~q~~~lf~dei-d~~ 218 (244)
....+++.+++++|++.+|-.++ |++
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~~tv~~~l 102 (207)
T cd03369 76 PLEDLRSSLTIIPQDPTLFSGTIRSNL 102 (207)
T ss_pred CHHHHHhhEEEEecCCcccCccHHHHh
Confidence 23456778999999876664444 444
No 240
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.13 E-value=7.5e-11 Score=105.10 Aligned_cols=96 Identities=14% Similarity=0.124 Sum_probs=69.2
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---HHHH----HHHhhhcCCCCceehh-hH-hhh
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT---DDRL----NHLLSVAPQNSIILLE-DI-DAA 218 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~---~~~~----~~~~~~~~q~~~lf~d-ei-d~~ 218 (244)
++.++.++-++|+||||||||||+++|+|++.|+.|.+.+++.++. ...+ ++.+++++|...+|.. ++ |++
T Consensus 13 s~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi 92 (363)
T TIGR01186 13 DLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNT 92 (363)
T ss_pred EEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHH
Confidence 6777788889999999999999999999999999999999995443 3334 5679999998777742 44 555
Q ss_pred hccc---CcCcccHHHHHHHHHHhhhcC
Q psy1371 219 FVTR---EESSQGLEDIDAAFVTREESS 243 (244)
Q Consensus 219 ~~~r---~~~~~~~~~~~~~~l~~~~~~ 243 (244)
.... +.......+....+++++++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~~vgL~ 120 (363)
T TIGR01186 93 SLGPELLGWPEQERKEKALELLKLVGLE 120 (363)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhcCCc
Confidence 4322 222223334456667777653
No 241
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.13 E-value=1e-11 Score=109.51 Aligned_cols=94 Identities=17% Similarity=0.176 Sum_probs=75.2
Q ss_pred CCCCCCccccChhH-HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC-----CCeEEEEeC
Q psy1371 115 RRRPLNSVVLDSGV-ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE-----FGICVLNLS 188 (244)
Q Consensus 115 ~~~~~~~v~~~~~~-~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~-----~~~g~i~~~ 188 (244)
..+.++++.+.|.. ...+++++ ++.+++|+.++|+||+|||||||+++|+|+.. ++.|.+.++
T Consensus 79 ~~i~~~nls~~y~~~~~~~L~~i-----------s~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~id 147 (329)
T PRK14257 79 NVFEIRNFNFWYMNRTKHVLHDL-----------NLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFL 147 (329)
T ss_pred ceEEEEeeEEEecCCCceeeeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 35678999988742 23578888 88899999999999999999999999999986 468999999
Q ss_pred CCCCC-----HHHHHHHhhhcCCCCceehhhH-hhhh
Q psy1371 189 ERGLT-----DDRLNHLLSVAPQNSIILLEDI-DAAF 219 (244)
Q Consensus 189 ~~~~~-----~~~~~~~~~~~~q~~~lf~dei-d~~~ 219 (244)
|.+.. ...+++.+++++|.+.+|..++ |++.
T Consensus 148 G~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~ 184 (329)
T PRK14257 148 GTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVA 184 (329)
T ss_pred CEEccccccchHhhhccEEEEecCCccCCCcHHHHHH
Confidence 86653 2356778999999888885555 5554
No 242
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.13 E-value=2.7e-11 Score=103.67 Aligned_cols=84 Identities=19% Similarity=0.275 Sum_probs=67.5
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC---
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL--- 192 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~--- 192 (244)
.+.++++.+.|+. ..+++++ ++.+.+++.++|+||||||||||+++|+|.++++.|.+.+++.+.
T Consensus 7 ~l~i~~l~~~~~~-~~~l~~i-----------sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~ 74 (265)
T PRK10253 7 RLRGEQLTLGYGK-YTVAENL-----------TVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHY 74 (265)
T ss_pred EEEEEEEEEEECC-EEEeeec-----------ceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhC
Confidence 3557788877754 3477888 888888888999999999999999999999999999999988543
Q ss_pred CHHHHHHHhhhcCCCCcee
Q psy1371 193 TDDRLNHLLSVAPQNSIIL 211 (244)
Q Consensus 193 ~~~~~~~~~~~~~q~~~lf 211 (244)
....+++.+++++|+..++
T Consensus 75 ~~~~~~~~i~~v~q~~~~~ 93 (265)
T PRK10253 75 ASKEVARRIGLLAQNATTP 93 (265)
T ss_pred CHHHHhhheEEeeccCcCC
Confidence 2345566789999886555
No 243
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.13 E-value=1.9e-11 Score=103.62 Aligned_cols=91 Identities=22% Similarity=0.247 Sum_probs=68.1
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC-----CeEEEEeCCCC
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF-----GICVLNLSERG 191 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~-----~~g~i~~~~~~ 191 (244)
+.++++.+.|+.+ .+++++ ++.+.+++.++|+||||||||||+++|+|.+.+ +.|.+.+++..
T Consensus 4 l~~~~l~~~~~~~-~~l~~v-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~ 71 (250)
T PRK14240 4 ISVKDLDLFYGDF-QALKKI-----------NLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQD 71 (250)
T ss_pred EEEEEEEEEECCc-eeeecc-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEE
Confidence 4567777777543 477888 888888888999999999999999999998763 58999998854
Q ss_pred CC-----HHHHHHHhhhcCCCCceehhhH-hhhh
Q psy1371 192 LT-----DDRLNHLLSVAPQNSIILLEDI-DAAF 219 (244)
Q Consensus 192 ~~-----~~~~~~~~~~~~q~~~lf~dei-d~~~ 219 (244)
.. ...+++.+++++|++.++..++ |++.
T Consensus 72 ~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~ni~ 105 (250)
T PRK14240 72 IYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVA 105 (250)
T ss_pred ccccccchHHHhccEEEEecCCccCcccHHHHHH
Confidence 43 2345677899998766553333 4443
No 244
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.13 E-value=1.7e-11 Score=104.08 Aligned_cols=91 Identities=21% Similarity=0.268 Sum_probs=70.0
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCC-----eEEEEeCCCC
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFG-----ICVLNLSERG 191 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~-----~g~i~~~~~~ 191 (244)
+.++++.+.|+. ..+++++ ++.+.+++.++|+||||+|||||+++|+|++.++ .|.+.+++..
T Consensus 5 l~~~~l~~~~~~-~~il~~~-----------s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~ 72 (251)
T PRK14249 5 IKIRGVNFFYHK-HQVLKNI-----------NMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNEN 72 (251)
T ss_pred EEEEEEEEEECC-eeEecce-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEE
Confidence 456777777653 3477888 8888888889999999999999999999999886 5999998854
Q ss_pred CC-----HHHHHHHhhhcCCCCceehhhH-hhhh
Q psy1371 192 LT-----DDRLNHLLSVAPQNSIILLEDI-DAAF 219 (244)
Q Consensus 192 ~~-----~~~~~~~~~~~~q~~~lf~dei-d~~~ 219 (244)
.. ...+++.+++++|++.+|...+ |++.
T Consensus 73 ~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~ 106 (251)
T PRK14249 73 IYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVA 106 (251)
T ss_pred ccccccChHHhhceEEEEecCCccCcCcHHHHHh
Confidence 32 2356778999999877664444 5543
No 245
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.13 E-value=2.7e-11 Score=103.43 Aligned_cols=91 Identities=16% Similarity=0.176 Sum_probs=67.9
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCC---eEEEEeCCCCCC
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFG---ICVLNLSERGLT 193 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~---~g~i~~~~~~~~ 193 (244)
+.++++.+.|+. ..+++++ ++.+.+++.++|+||||||||||+++|+|++.++ .|.+.+++....
T Consensus 5 l~~~nl~~~~~~-~~il~~v-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~ 72 (262)
T PRK09984 5 IRVEKLAKTFNQ-HQALHAV-----------DLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQ 72 (262)
T ss_pred EEEeeEEEEeCC-eEEEecc-----------eEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecc
Confidence 446777777653 3467888 8888888889999999999999999999999875 499999885432
Q ss_pred --------HHHHHHHhhhcCCCCceehh-hH-hhhh
Q psy1371 194 --------DDRLNHLLSVAPQNSIILLE-DI-DAAF 219 (244)
Q Consensus 194 --------~~~~~~~~~~~~q~~~lf~d-ei-d~~~ 219 (244)
...+++.+++++|+..+|.+ ++ |++.
T Consensus 73 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 108 (262)
T PRK09984 73 REGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVL 108 (262)
T ss_pred cccccchhHHHHHhheEEEccccccccCCcHHHHHH
Confidence 13456678999988665532 33 4543
No 246
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.12 E-value=2.5e-11 Score=105.99 Aligned_cols=103 Identities=20% Similarity=0.301 Sum_probs=75.5
Q ss_pred CceeecCCCCC-CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC----
Q psy1371 105 SEWRPFGHPKR-RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE---- 179 (244)
Q Consensus 105 ~~~~~~~~~~~-~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~---- 179 (244)
++|........ .+.++++.+.++. ..+++++ ++.+.+++.++|+||||||||||+++|+|++.
T Consensus 33 ~~~~~~~~~~~~~l~i~nl~~~~~~-~~iL~~i-----------s~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~ 100 (305)
T PRK14264 33 DEWTDYEFDGDAKLSVEDLDVYYGD-DHALKGV-----------SMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKA 100 (305)
T ss_pred hcccccccCCCceEEEEEEEEEeCC-eeeeeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCC
Confidence 45554443322 3678899888754 3477888 88888888899999999999999999999986
Q ss_pred -CCeEEEEeCCCCCC-----HHHHHHHhhhcCCCCceehhhH-hhhh
Q psy1371 180 -FGICVLNLSERGLT-----DDRLNHLLSVAPQNSIILLEDI-DAAF 219 (244)
Q Consensus 180 -~~~g~i~~~~~~~~-----~~~~~~~~~~~~q~~~lf~dei-d~~~ 219 (244)
++.|.+.+++.... ...+++.+++++|+..+|-..+ |++.
T Consensus 101 ~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~ 147 (305)
T PRK14264 101 ARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENIS 147 (305)
T ss_pred CCCceEEEECCEEcccccccHHHHhhceEEEccCCccccccHHHHHH
Confidence 57899999885432 2345677899999876663344 4443
No 247
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.12 E-value=2.3e-11 Score=104.09 Aligned_cols=67 Identities=22% Similarity=0.294 Sum_probs=55.6
Q ss_pred HHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---HH---HHHHHhhhc
Q psy1371 131 RILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT---DD---RLNHLLSVA 204 (244)
Q Consensus 131 ~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~---~~---~~~~~~~~~ 204 (244)
.+++++ ++.+++++.++|.||||||||||+++|+|++.++.|.+.+++.... .. .+++.++++
T Consensus 25 ~il~~i-----------sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v 93 (265)
T TIGR02769 25 PVLTNV-----------SLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLV 93 (265)
T ss_pred EEeeCc-----------eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEE
Confidence 467888 7888888889999999999999999999999999999999885432 21 245678999
Q ss_pred CCCC
Q psy1371 205 PQNS 208 (244)
Q Consensus 205 ~q~~ 208 (244)
+|++
T Consensus 94 ~q~~ 97 (265)
T TIGR02769 94 FQDS 97 (265)
T ss_pred ecCh
Confidence 9875
No 248
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.12 E-value=8.5e-12 Score=100.53 Aligned_cols=81 Identities=25% Similarity=0.314 Sum_probs=62.4
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC-----
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT----- 193 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~----- 193 (244)
++++.+.++. ..+++++ ++.++.++.++|.||||+|||||+++|+|.+.++.|++.+++....
T Consensus 3 ~~~l~~~~~~-~~~l~~i-----------~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~ 70 (178)
T cd03229 3 LKNVSKRYGQ-KTVLNDV-----------SLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDE 70 (178)
T ss_pred EEEEEEEECC-eEEEeee-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchh
Confidence 4555555543 2366777 7788888889999999999999999999999999999999885432
Q ss_pred HHHHHHHhhhcCCCCcee
Q psy1371 194 DDRLNHLLSVAPQNSIIL 211 (244)
Q Consensus 194 ~~~~~~~~~~~~q~~~lf 211 (244)
...+++.+++++|++.++
T Consensus 71 ~~~~~~~i~~~~q~~~~~ 88 (178)
T cd03229 71 LPPLRRRIGMVFQDFALF 88 (178)
T ss_pred HHHHhhcEEEEecCCccC
Confidence 234567788888876655
No 249
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.12 E-value=3.4e-11 Score=98.85 Aligned_cols=81 Identities=16% Similarity=0.165 Sum_probs=62.2
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC--HHH
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT--DDR 196 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~--~~~ 196 (244)
++++.+.++. ..+++++ ++.+++++.++|+||||+|||||+++|+|++.++.|.+.+++.... ...
T Consensus 3 i~~l~~~~~~-~~~l~~i-----------sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~ 70 (201)
T cd03231 3 ADELTCERDG-RALFSGL-----------SFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDS 70 (201)
T ss_pred EEEEEEEeCC-ceeeccc-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHH
Confidence 4555555543 2466777 7888888889999999999999999999999999999999885432 234
Q ss_pred HHHHhhhcCCCCcee
Q psy1371 197 LNHLLSVAPQNSIIL 211 (244)
Q Consensus 197 ~~~~~~~~~q~~~lf 211 (244)
+++.+++++|+..++
T Consensus 71 ~~~~i~~~~q~~~~~ 85 (201)
T cd03231 71 IARGLLYLGHAPGIK 85 (201)
T ss_pred hhhheEEeccccccC
Confidence 667788888765443
No 250
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.12 E-value=2.3e-11 Score=102.26 Aligned_cols=80 Identities=20% Similarity=0.314 Sum_probs=62.1
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH-HHH
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD-DRL 197 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~-~~~ 197 (244)
++++.+.|+. .+++++ ++.+.+++.++|+||||+|||||+++|+|.++++.|.+.+++..... ...
T Consensus 3 ~~~l~~~~~~--~~l~~i-----------s~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~ 69 (235)
T cd03299 3 VENLSKDWKE--FKLKNV-----------SLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE 69 (235)
T ss_pred eEeEEEEeCC--ceeeee-----------EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChh
Confidence 4566666543 257777 78888888899999999999999999999999999999998854432 123
Q ss_pred HHHhhhcCCCCcee
Q psy1371 198 NHLLSVAPQNSIIL 211 (244)
Q Consensus 198 ~~~~~~~~q~~~lf 211 (244)
++.+++++|+..+|
T Consensus 70 ~~~i~~~~q~~~~~ 83 (235)
T cd03299 70 KRDISYVPQNYALF 83 (235)
T ss_pred HcCEEEEeecCccC
Confidence 55688888876555
No 251
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.11 E-value=2.9e-11 Score=102.44 Aligned_cols=83 Identities=12% Similarity=0.216 Sum_probs=64.6
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC-----CeEEEEeCCCC
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF-----GICVLNLSERG 191 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~-----~~g~i~~~~~~ 191 (244)
+.++++.+.|+. ..+++++ ++.+.+|+.++|.||||+|||||+++|+|++++ +.|.+.+++..
T Consensus 4 l~~~~l~~~~~~-~~~l~~i-----------~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~ 71 (250)
T PRK14262 4 IEIENFSAYYGE-KKAVKNV-----------TMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQD 71 (250)
T ss_pred EEEEeeEEEeCC-ceeEeee-----------eEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEE
Confidence 346777777653 3467788 888888888999999999999999999999874 78999998854
Q ss_pred CCH-----HHHHHHhhhcCCCCcee
Q psy1371 192 LTD-----DRLNHLLSVAPQNSIIL 211 (244)
Q Consensus 192 ~~~-----~~~~~~~~~~~q~~~lf 211 (244)
... ..+++.+++++|++.++
T Consensus 72 ~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14262 72 IYDPQLDVTEYRKKVGMVFQKPTPF 96 (250)
T ss_pred cccchhhHHHhhhhEEEEecCCccC
Confidence 431 24567789999876665
No 252
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.11 E-value=2.2e-11 Score=99.71 Aligned_cols=81 Identities=15% Similarity=0.199 Sum_probs=60.8
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH--HH
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD--DR 196 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~--~~ 196 (244)
++++.+.++. ..+++++ ++.+.+++.++|+||||+|||||+++|+|.++++.|.+.+++.+... ..
T Consensus 3 ~~~l~~~~~~-~~~l~~v-----------sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~ 70 (198)
T TIGR01189 3 ARNLACSRGE-RMLFEGL-----------SFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDE 70 (198)
T ss_pred EEEEEEEECC-EEEEeee-----------eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHH
Confidence 3445544433 2356777 77888888899999999999999999999999999999998854322 23
Q ss_pred HHHHhhhcCCCCcee
Q psy1371 197 LNHLLSVAPQNSIIL 211 (244)
Q Consensus 197 ~~~~~~~~~q~~~lf 211 (244)
.++.+++++|...++
T Consensus 71 ~~~~i~~~~q~~~~~ 85 (198)
T TIGR01189 71 PHRNILYLGHLPGLK 85 (198)
T ss_pred hhhheEEeccCcccc
Confidence 456678888865554
No 253
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.11 E-value=3.2e-11 Score=100.56 Aligned_cols=70 Identities=16% Similarity=0.241 Sum_probs=54.2
Q ss_pred HHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCC----CC---CHHH---H-HH
Q psy1371 131 RILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSER----GL---TDDR---L-NH 199 (244)
Q Consensus 131 ~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~----~~---~~~~---~-~~ 199 (244)
.+++++ ++.+..++.++|+||||+|||||+++|+|.+.++.|.+.+++. +. +... + ++
T Consensus 22 ~il~~v-----------s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~ 90 (224)
T TIGR02324 22 PVLKNV-----------SLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRK 90 (224)
T ss_pred EEEecc-----------eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhc
Confidence 467777 7788888889999999999999999999999999999998732 22 1121 2 34
Q ss_pred HhhhcCCCCcee
Q psy1371 200 LLSVAPQNSIIL 211 (244)
Q Consensus 200 ~~~~~~q~~~lf 211 (244)
.+++++|++.++
T Consensus 91 ~i~~~~q~~~~~ 102 (224)
T TIGR02324 91 TIGYVSQFLRVI 102 (224)
T ss_pred ceEEEecccccC
Confidence 578899876554
No 254
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.11 E-value=2.5e-11 Score=104.54 Aligned_cols=81 Identities=19% Similarity=0.124 Sum_probs=64.8
Q ss_pred CCCCccccChhHH--HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC-
Q psy1371 117 RPLNSVVLDSGVA--DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT- 193 (244)
Q Consensus 117 ~~~~~v~~~~~~~--~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~- 193 (244)
+.++++.+.|+.. ..+++++ ++.+.+|+.++|+||||+|||||+++|+|.+.++.|.+.+++....
T Consensus 5 l~~~~l~~~~~~~~~~~~l~~v-----------~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~ 73 (277)
T PRK13642 5 LEVENLVFKYEKESDVNQLNGV-----------SFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTA 73 (277)
T ss_pred EEEEEEEEEcCCCCcCeeeeee-----------EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCc
Confidence 4467777776521 2367888 8888888889999999999999999999999999999999885443
Q ss_pred --HHHHHHHhhhcCCCC
Q psy1371 194 --DDRLNHLLSVAPQNS 208 (244)
Q Consensus 194 --~~~~~~~~~~~~q~~ 208 (244)
...+++.+++++|++
T Consensus 74 ~~~~~~~~~i~~v~q~~ 90 (277)
T PRK13642 74 ENVWNLRRKIGMVFQNP 90 (277)
T ss_pred CCHHHHhcceEEEEECH
Confidence 345667789999875
No 255
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.11 E-value=2e-11 Score=103.58 Aligned_cols=90 Identities=23% Similarity=0.242 Sum_probs=67.6
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC-----CeEEEEeCCCC
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF-----GICVLNLSERG 191 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~-----~~g~i~~~~~~ 191 (244)
+.++++.+.|+. ..+++++ ++.+++++.++|+||||+|||||+++|+|...+ +.|.+.+++..
T Consensus 5 l~~~~l~~~~~~-~~~l~~i-----------sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~ 72 (251)
T PRK14270 5 MESKNLNLWYGE-KQALNDI-----------NLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKN 72 (251)
T ss_pred EEEEEeEEEECC-eeeeece-----------eEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEe
Confidence 446677776643 3467888 788888888999999999999999999999875 68999998854
Q ss_pred CC-----HHHHHHHhhhcCCCCceehhhH-hhh
Q psy1371 192 LT-----DDRLNHLLSVAPQNSIILLEDI-DAA 218 (244)
Q Consensus 192 ~~-----~~~~~~~~~~~~q~~~lf~dei-d~~ 218 (244)
.. ....++.+++++|+..+|..++ |++
T Consensus 73 i~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl 105 (251)
T PRK14270 73 IYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNV 105 (251)
T ss_pred cccccccHHHHHhheEEEecCCCcCCCcHHHHH
Confidence 42 2345677899999876664343 444
No 256
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.11 E-value=4.7e-11 Score=94.05 Aligned_cols=97 Identities=22% Similarity=0.253 Sum_probs=74.1
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC---CHH---HHH-HHhhhcCCCCcee-----hhhH
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL---TDD---RLN-HLLSVAPQNSIIL-----LEDI 215 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~---~~~---~~~-~~~~~~~q~~~lf-----~dei 215 (244)
++.+.+++.++|+||||+|||||+-.+||+-.++.|.+.+.+... .++ .+| +.+++|+|.-.++ ++++
T Consensus 30 ~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV 109 (228)
T COG4181 30 ELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENV 109 (228)
T ss_pred eEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhc
Confidence 777888888999999999999999999999999999999988433 332 233 5688888865444 5555
Q ss_pred hhhhcccCcCcccHHHHHHHHHHhhhcCC
Q psy1371 216 DAAFVTREESSQGLEDIDAAFVTREESSQ 244 (244)
Q Consensus 216 d~~~~~r~~~~~~~~~~~~~~l~~~~~~~ 244 (244)
...+.-++.+.....+....+|.++++++
T Consensus 110 ~lPleL~ge~~~~~~~~A~~lL~~vGLg~ 138 (228)
T COG4181 110 ALPLELRGESSADSRAGAKALLEAVGLGK 138 (228)
T ss_pred cchhhhcCCccccHHHHHHHHHHHhCccc
Confidence 55555566556666677888888888763
No 257
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.11 E-value=8e-11 Score=119.47 Aligned_cols=78 Identities=21% Similarity=0.262 Sum_probs=61.3
Q ss_pred hhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCC---------------C-----------------
Q psy1371 144 AWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSER---------------G----------------- 191 (244)
Q Consensus 144 ~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~---------------~----------------- 191 (244)
.+..++|+.+++|++|+||||||||.|+|++|+....+...+..++. +
T Consensus 1620 P~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~ 1699 (2281)
T CHL00206 1620 PFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDT 1699 (2281)
T ss_pred CHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccch
Confidence 34457889999999999999999999999999999988877765430 0
Q ss_pred ----------------CCHHHHHHHhhhcC--CCCceehhhHhhhhcc
Q psy1371 192 ----------------LTDDRLNHLLSVAP--QNSIILLEDIDAAFVT 221 (244)
Q Consensus 192 ----------------~~~~~~~~~~~~~~--q~~~lf~deid~~~~~ 221 (244)
+....++..|..|. +||++|+||||.++..
T Consensus 1700 e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ 1747 (2281)
T CHL00206 1700 ELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVN 1747 (2281)
T ss_pred hhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCC
Confidence 00113667787775 5899999999999865
No 258
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.11 E-value=2.7e-11 Score=103.25 Aligned_cols=94 Identities=16% Similarity=0.134 Sum_probs=74.7
Q ss_pred CCCCCCCccccChhHH-HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC
Q psy1371 114 KRRRPLNSVVLDSGVA-DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL 192 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~~-~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~ 192 (244)
.+.+.++++.+.++.. ..+++++ ++.+.+++.++|+||||+|||||+++|+|++.++.|.+.+++...
T Consensus 17 ~~~i~~~~l~~~~~~~~~~il~~i-----------sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i 85 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPVLKHV-----------KAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDI 85 (257)
T ss_pred CceEEEEEEEEEeCCCCCcceeEE-----------EEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEh
Confidence 4557788888887532 3477888 888888888999999999999999999999999999999988544
Q ss_pred C---HHHHHHHhhhcCCCCceehhhH-hhh
Q psy1371 193 T---DDRLNHLLSVAPQNSIILLEDI-DAA 218 (244)
Q Consensus 193 ~---~~~~~~~~~~~~q~~~lf~dei-d~~ 218 (244)
. ...+++.+++++|++.+|-.++ |++
T Consensus 86 ~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl 115 (257)
T cd03288 86 SKLPLHTLRSRLSIILQDPILFSGSIRFNL 115 (257)
T ss_pred hhCCHHHHhhhEEEECCCCcccccHHHHhc
Confidence 3 3456778899999877765454 444
No 259
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.11 E-value=3.3e-11 Score=102.55 Aligned_cols=80 Identities=26% Similarity=0.319 Sum_probs=63.2
Q ss_pred CCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC---CH
Q psy1371 118 PLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL---TD 194 (244)
Q Consensus 118 ~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~---~~ 194 (244)
.++++.+.++. ..+++++ ++.+.+++.++|+||||+|||||+++|+|.++++.|.+.+++... ..
T Consensus 3 ~~~~l~~~~~~-~~il~~i-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~ 70 (256)
T TIGR03873 3 RLSRVSWSAGG-RLIVDGV-----------DVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSR 70 (256)
T ss_pred eEEeEEEEECC-EEEEeee-----------eEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCH
Confidence 35566666643 3467888 788888888999999999999999999999999999999988543 23
Q ss_pred HHHHHHhhhcCCCCc
Q psy1371 195 DRLNHLLSVAPQNSI 209 (244)
Q Consensus 195 ~~~~~~~~~~~q~~~ 209 (244)
..+++.+++++|+..
T Consensus 71 ~~~~~~i~~~~q~~~ 85 (256)
T TIGR03873 71 RARARRVALVEQDSD 85 (256)
T ss_pred HHHhhheEEecccCc
Confidence 455667889998754
No 260
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.11 E-value=3.2e-11 Score=103.57 Aligned_cols=91 Identities=22% Similarity=0.276 Sum_probs=71.2
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC-----CCeEEEEeCCCC
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE-----FGICVLNLSERG 191 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~-----~~~g~i~~~~~~ 191 (244)
+.++++.+.|+. ..+++++ ++.+++|+.++|+||||+|||||+++|+|.+. ++.|.+.+++..
T Consensus 25 l~~~~l~~~~~~-~~il~~v-----------sl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~ 92 (271)
T PRK14238 25 FDTQNLNLWYGE-DHALKNI-----------NLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQN 92 (271)
T ss_pred EEEeeeEEEECC-cceeeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEE
Confidence 678899888754 3477888 88888888899999999999999999999987 588999998854
Q ss_pred CC-----HHHHHHHhhhcCCCCceehhhH-hhhh
Q psy1371 192 LT-----DDRLNHLLSVAPQNSIILLEDI-DAAF 219 (244)
Q Consensus 192 ~~-----~~~~~~~~~~~~q~~~lf~dei-d~~~ 219 (244)
.. ...+++.+++++|++.+|...+ |++.
T Consensus 93 ~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~ 126 (271)
T PRK14238 93 IFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVT 126 (271)
T ss_pred cccccccHHHHhhhEEEEecCCccccccHHHHHH
Confidence 32 2345677899999876664444 4443
No 261
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.10 E-value=2.1e-10 Score=100.87 Aligned_cols=89 Identities=17% Similarity=0.118 Sum_probs=68.7
Q ss_pred CCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC-
Q psy1371 114 KRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL- 192 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~- 192 (244)
...+++.+|.|.|...+--+.-| ++.+..|.-+-++|.|||||||+++.+.|++.|+.|.|.++|..+
T Consensus 320 ~~~lelrnvrfay~~~~FhvgPi-----------Nl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~ 388 (546)
T COG4615 320 WKTLELRNVRFAYQDNAFHVGPI-----------NLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVS 388 (546)
T ss_pred ccceeeeeeeeccCcccceecce-----------eeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCC
Confidence 44577889988886543222233 445555555799999999999999999999999999999999544
Q ss_pred --CHHHHHHHhhhcCCCCceehh
Q psy1371 193 --TDDRLNHLLSVAPQNSIILLE 213 (244)
Q Consensus 193 --~~~~~~~~~~~~~q~~~lf~d 213 (244)
+.+..|+.|+.++.+..+|-+
T Consensus 389 ~e~ledYR~LfSavFsDyhLF~~ 411 (546)
T COG4615 389 AEQLEDYRKLFSAVFSDYHLFDQ 411 (546)
T ss_pred CCCHHHHHHHHHHHhhhHhhhHh
Confidence 457899999999988777643
No 262
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.10 E-value=1.6e-11 Score=104.26 Aligned_cols=91 Identities=13% Similarity=0.172 Sum_probs=67.3
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT--- 193 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~--- 193 (244)
+.++++.+.++. ..+++++ ++.+.+++.++|+||||||||||+++|+|+++++.|.+.+++....
T Consensus 6 l~~~~l~~~~~~-~~~l~~i-----------s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~ 73 (255)
T PRK11300 6 LSVSGLMMRFGG-LLAVNNV-----------NLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLP 73 (255)
T ss_pred EEEeeEEEEECC-EEEEEee-----------eeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCC
Confidence 456777777653 3467788 7888888889999999999999999999999999999999985432
Q ss_pred HHH-HHHHhhhcCCCCceehh-hH-hhhh
Q psy1371 194 DDR-LNHLLSVAPQNSIILLE-DI-DAAF 219 (244)
Q Consensus 194 ~~~-~~~~~~~~~q~~~lf~d-ei-d~~~ 219 (244)
... .+..+.+++|++.++.+ ++ |++.
T Consensus 74 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 102 (255)
T PRK11300 74 GHQIARMGVVRTFQHVRLFREMTVIENLL 102 (255)
T ss_pred HHHHHhcCeEEeccCcccCCCCcHHHHHH
Confidence 222 23346777887766642 44 4444
No 263
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.10 E-value=1e-10 Score=94.07 Aligned_cols=112 Identities=17% Similarity=0.201 Sum_probs=78.5
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCC---CCHH
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERG---LTDD 195 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~---~~~~ 195 (244)
+++|+..|+. +.+++++ ++.+|.++-..|+||||+|||||+.+++++.+.+.|.+.+++.+ .+.+
T Consensus 4 i~nv~K~y~~-~~vl~~i-----------sl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~ 71 (252)
T COG4604 4 IENVSKSYGT-KVVLDDV-----------SLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSK 71 (252)
T ss_pred ehhhhHhhCC-EEeeccc-----------eeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChH
Confidence 4556655654 3466777 78888888899999999999999999999999999999999954 4557
Q ss_pred HHHHHhhhcCCCC----ceehhhHhhhh---cccCcCcccHHHHHHHHHHhhhc
Q psy1371 196 RLNHLLSVAPQNS----IILLEDIDAAF---VTREESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 196 ~~~~~~~~~~q~~----~lf~deid~~~---~~r~~~~~~~~~~~~~~l~~~~~ 242 (244)
.+.+.++...|.. -+-..++=.+. +.++....+.++..++.++.+++
T Consensus 72 ~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L 125 (252)
T COG4604 72 ELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHL 125 (252)
T ss_pred HHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcc
Confidence 8888888888753 23344443332 23344444555555555555443
No 264
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.10 E-value=2e-11 Score=103.51 Aligned_cols=90 Identities=20% Similarity=0.219 Sum_probs=68.1
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC-----CCeEEEEeCCCC
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE-----FGICVLNLSERG 191 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~-----~~~g~i~~~~~~ 191 (244)
+.++++.+.|+. ..+++++ ++.++.++.++|+||||+|||||+++|+|.+. ++.|.+.+++..
T Consensus 5 l~~~~l~~~~~~-~~~l~~~-----------sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~ 72 (251)
T PRK14251 5 ISAKDVHLSYGN-YEALHGI-----------SLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQN 72 (251)
T ss_pred EEEEeeEEEECC-eeeeeee-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEE
Confidence 456778777754 3577888 88888888899999999999999999999986 368999998854
Q ss_pred CC-----HHHHHHHhhhcCCCCceehhhH-hhh
Q psy1371 192 LT-----DDRLNHLLSVAPQNSIILLEDI-DAA 218 (244)
Q Consensus 192 ~~-----~~~~~~~~~~~~q~~~lf~dei-d~~ 218 (244)
.. ...+++.+++++|++.+|-..+ |++
T Consensus 73 ~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl 105 (251)
T PRK14251 73 IYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNV 105 (251)
T ss_pred cccccchHHHhhccEEEEecCCccCCCcHHHHH
Confidence 32 1245667889998876663344 444
No 265
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.10 E-value=2e-11 Score=104.16 Aligned_cols=92 Identities=20% Similarity=0.269 Sum_probs=70.0
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC-----CeEEEEeCCC
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF-----GICVLNLSER 190 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~-----~~g~i~~~~~ 190 (244)
.+.++++.+.|+. ..+++++ ++.+.+++.++|+||||||||||+++|+|++.+ +.|.+.+++.
T Consensus 7 ~l~~~~l~~~~~~-~~il~~i-----------sl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~ 74 (259)
T PRK14260 7 AIKVKDLSFYYNT-SKAIEGI-----------SMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQ 74 (259)
T ss_pred eEEEEEEEEEECC-eEeecce-----------EEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCE
Confidence 3567788877754 3477888 888888888999999999999999999999875 3799999885
Q ss_pred CCC-----HHHHHHHhhhcCCCCceehhhH-hhhh
Q psy1371 191 GLT-----DDRLNHLLSVAPQNSIILLEDI-DAAF 219 (244)
Q Consensus 191 ~~~-----~~~~~~~~~~~~q~~~lf~dei-d~~~ 219 (244)
... ...+++.+++++|+..+|...+ |++.
T Consensus 75 ~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~ 109 (259)
T PRK14260 75 NIYDPRININRLRRQIGMVFQRPNPFPMSIYENVA 109 (259)
T ss_pred eccccccchHhhhhheEEEecccccCCccHHHHHH
Confidence 442 2345677899999876664444 4443
No 266
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.10 E-value=3.9e-11 Score=100.64 Aligned_cols=64 Identities=23% Similarity=0.298 Sum_probs=52.7
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH-HHHHHHhhhcCCCCcee
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD-DRLNHLLSVAPQNSIIL 211 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~-~~~~~~~~~~~q~~~lf 211 (244)
++.+.+++.++|+||||||||||+++|+|++.++.|.+.+++..... ...++.+++++|.+.++
T Consensus 19 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~ 83 (232)
T PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLF 83 (232)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccc
Confidence 78888888899999999999999999999999999999999854432 11245688889876555
No 267
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.10 E-value=5.2e-11 Score=100.37 Aligned_cols=81 Identities=20% Similarity=0.222 Sum_probs=60.9
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhccc--CCCeEEEEeCCCCCC---
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGEL--EFGICVLNLSERGLT--- 193 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~--~~~~g~i~~~~~~~~--- 193 (244)
++++.+.|+. ..+++++ ++.+++++.++|+||||||||||+++|+|+. .++.|.+.+++....
T Consensus 3 ~~~l~~~~~~-~~~l~~i-----------sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~ 70 (243)
T TIGR01978 3 IKDLHVSVED-KEILKGV-----------NLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELE 70 (243)
T ss_pred EeeEEEEECC-EEEEecc-----------ceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCC
Confidence 5666666643 2467777 7888888889999999999999999999995 688999999885432
Q ss_pred HHHH-HHHhhhcCCCCcee
Q psy1371 194 DDRL-NHLLSVAPQNSIIL 211 (244)
Q Consensus 194 ~~~~-~~~~~~~~q~~~lf 211 (244)
.... +..+++++|++.++
T Consensus 71 ~~~~~~~~i~~v~q~~~~~ 89 (243)
T TIGR01978 71 PDERARAGLFLAFQYPEEI 89 (243)
T ss_pred HHHhhccceEeeecccccc
Confidence 2222 33477888876554
No 268
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.10 E-value=2.4e-11 Score=104.60 Aligned_cols=92 Identities=20% Similarity=0.211 Sum_probs=71.8
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC-----CeEEEEeCCC
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF-----GICVLNLSER 190 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~-----~~g~i~~~~~ 190 (244)
-+.++++.+.|+. ..+++++ ++.+++++.++|+||||+|||||+++|+|++.+ +.|.+.+++.
T Consensus 21 ~l~i~nl~~~~~~-~~il~~v-----------s~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~ 88 (276)
T PRK14271 21 AMAAVNLTLGFAG-KTVLDQV-----------SMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGR 88 (276)
T ss_pred EEEEeeEEEEECC-EEEeeee-----------EEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCE
Confidence 3578899988864 3577888 888888888999999999999999999999885 6899999885
Q ss_pred CCC----HHHHHHHhhhcCCCCceehhhH-hhhh
Q psy1371 191 GLT----DDRLNHLLSVAPQNSIILLEDI-DAAF 219 (244)
Q Consensus 191 ~~~----~~~~~~~~~~~~q~~~lf~dei-d~~~ 219 (244)
... ...+++.+++++|+..+|..++ +++.
T Consensus 89 ~i~~~~~~~~~~~~i~~v~q~~~l~~~tv~eni~ 122 (276)
T PRK14271 89 SIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVL 122 (276)
T ss_pred EccccchhHHHhhheEEeccCCccCCccHHHHHH
Confidence 432 2345777899999876664444 4443
No 269
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.10 E-value=3.9e-11 Score=101.62 Aligned_cols=90 Identities=22% Similarity=0.298 Sum_probs=68.5
Q ss_pred CCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC-----CeEEEEeCCCCC
Q psy1371 118 PLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF-----GICVLNLSERGL 192 (244)
Q Consensus 118 ~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~-----~~g~i~~~~~~~ 192 (244)
.++++.+.|+. ..+++++ ++.+.+++.++|.||||+|||||+++|+|.+.+ +.|.+.+++...
T Consensus 5 ~~~~l~~~~~~-~~~l~~v-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~ 72 (249)
T PRK14253 5 NIENLDLFYGE-NQALKSI-----------NLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDI 72 (249)
T ss_pred EEeccEEEECC-eeeeecc-----------eEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEc
Confidence 45677776653 3477888 888888888999999999999999999999885 489999988543
Q ss_pred ----CHHHHHHHhhhcCCCCceehhhH-hhhh
Q psy1371 193 ----TDDRLNHLLSVAPQNSIILLEDI-DAAF 219 (244)
Q Consensus 193 ----~~~~~~~~~~~~~q~~~lf~dei-d~~~ 219 (244)
....+++.+++++|++.+|..++ |++.
T Consensus 73 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l~ 104 (249)
T PRK14253 73 YGNIDVADLRIKVGMVFQKPNPFPMSIYENVA 104 (249)
T ss_pred ccccchHHHHhheeEEecCCCcCcccHHHHHH
Confidence 23456778899999876664444 5544
No 270
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.10 E-value=2.8e-11 Score=102.74 Aligned_cols=84 Identities=15% Similarity=0.245 Sum_probs=65.4
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC--C---CeEEEEeCCCC
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE--F---GICVLNLSERG 191 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~--~---~~g~i~~~~~~ 191 (244)
+.++++.+.|+. ..+++++ ++.+++++.++|+||||||||||+++|+|++. + +.|.+.+++..
T Consensus 5 l~~~nl~~~~~~-~~~l~~i-----------sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~ 72 (252)
T PRK14256 5 VKLEQLNVHFGK-NHAVKDV-----------SMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTD 72 (252)
T ss_pred EEEEEEEEEeCC-eeEEecc-----------eEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEE
Confidence 456777777753 3477888 88888888899999999999999999999986 3 47999998854
Q ss_pred CC-----HHHHHHHhhhcCCCCceeh
Q psy1371 192 LT-----DDRLNHLLSVAPQNSIILL 212 (244)
Q Consensus 192 ~~-----~~~~~~~~~~~~q~~~lf~ 212 (244)
.. ...+++.+++++|+..+|.
T Consensus 73 i~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (252)
T PRK14256 73 IYDRGVDPVSIRRRVGMVFQKPNPFP 98 (252)
T ss_pred cccccCChHHhhccEEEEecCCCCCC
Confidence 32 2345677899998866653
No 271
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.10 E-value=2.5e-11 Score=103.00 Aligned_cols=88 Identities=24% Similarity=0.285 Sum_probs=66.2
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC-----CCeEEEEeCCCCCC
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE-----FGICVLNLSERGLT 193 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~-----~~~g~i~~~~~~~~ 193 (244)
++++.+.++. ..+++++ ++.+.+|+.++|.||||||||||+++|+|... ++.|.+.+++....
T Consensus 8 ~~~l~~~~~~-~~~l~~i-----------s~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~ 75 (251)
T PRK14244 8 VKNLNLWYGS-KQILFDI-----------NLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVY 75 (251)
T ss_pred eeeEEEEECC-eeeeeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehH
Confidence 5666666643 3467788 88888888899999999999999999999976 36899999885432
Q ss_pred H-----HHHHHHhhhcCCCCceehhhH-hhh
Q psy1371 194 D-----DRLNHLLSVAPQNSIILLEDI-DAA 218 (244)
Q Consensus 194 ~-----~~~~~~~~~~~q~~~lf~dei-d~~ 218 (244)
. ..+++.+++++|+..+|..++ |++
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~~ni 106 (251)
T PRK14244 76 SVDTNVVLLRAKVGMVFQKPNPFPKSIYDNV 106 (251)
T ss_pred hcccchHHHhhhEEEEecCcccccCCHHHHH
Confidence 2 245677899999876664344 444
No 272
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.09 E-value=5e-11 Score=122.96 Aligned_cols=64 Identities=28% Similarity=0.325 Sum_probs=55.7
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHhhhcCCCCceehhhH-hhhhcc
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRLNHLLSVAPQNSIILLEDI-DAAFVT 221 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~q~~~lf~dei-d~~~~~ 221 (244)
++.+++|+-++++||+|||||||+++|+|++.++.|.+.+++ .+++++|.+.+|-+.+ |++...
T Consensus 446 ~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g----------~iayv~Q~~~l~~~Ti~eNI~~g 510 (1490)
T TIGR01271 446 SFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG----------RISFSPQTSWIMPGTIKDNIIFG 510 (1490)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC----------EEEEEeCCCccCCccHHHHHHhc
Confidence 777888888999999999999999999999999999999876 3788899888887777 777644
No 273
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.09 E-value=6.6e-11 Score=98.12 Aligned_cols=78 Identities=23% Similarity=0.313 Sum_probs=66.3
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCC----C
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSER----G 191 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~----~ 191 (244)
-+.+++|...++++ .+++++ +..+++++.++|+||||+|||||++.+++.+.+..|.+.+.+. .
T Consensus 31 li~l~~v~v~r~gk-~iL~~i-----------sW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~ 98 (257)
T COG1119 31 LIELKNVSVRRNGK-KILGDL-----------SWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKG 98 (257)
T ss_pred eEEecceEEEECCE-eecccc-----------ceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCC
Confidence 37899999999774 588999 8888889999999999999999999999999998888887662 2
Q ss_pred CCHHHHHHHhhhcC
Q psy1371 192 LTDDRLNHLLSVAP 205 (244)
Q Consensus 192 ~~~~~~~~~~~~~~ 205 (244)
.....+|+.++++.
T Consensus 99 ~~~~elrk~IG~vS 112 (257)
T COG1119 99 ETIFELRKRIGLVS 112 (257)
T ss_pred cchHHHHHHhCccC
Confidence 23367899999886
No 274
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.09 E-value=2e-11 Score=105.62 Aligned_cols=92 Identities=17% Similarity=0.239 Sum_probs=70.2
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC-----CCeEEEEeCCC
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE-----FGICVLNLSER 190 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~-----~~~g~i~~~~~ 190 (244)
.+.++++.+.|+.. .+++++ ++.+.+|+.++|+||||||||||+++|+|+.. ++.|.+.+++.
T Consensus 39 ~l~~~~l~~~~~~~-~il~~v-----------sl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~ 106 (286)
T PRK14275 39 HVVAKNFSIYYGEF-EAVKKV-----------NADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGE 106 (286)
T ss_pred EEEEeeeEEEECCE-EEEeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCE
Confidence 36788888877542 467788 88888888899999999999999999999864 48899999885
Q ss_pred CCC-----HHHHHHHhhhcCCCCceehhhH-hhhh
Q psy1371 191 GLT-----DDRLNHLLSVAPQNSIILLEDI-DAAF 219 (244)
Q Consensus 191 ~~~-----~~~~~~~~~~~~q~~~lf~dei-d~~~ 219 (244)
... ...+++.+++++|+..+|...+ |++.
T Consensus 107 ~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~ 141 (286)
T PRK14275 107 DIYGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIA 141 (286)
T ss_pred EhhhcccchHHhhhcEEEECCCCCCCccCHHHHHH
Confidence 432 1245678999999876664454 5554
No 275
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.09 E-value=7.6e-11 Score=101.32 Aligned_cols=80 Identities=31% Similarity=0.385 Sum_probs=62.5
Q ss_pred CCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCC--------eEEEEeCC
Q psy1371 118 PLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFG--------ICVLNLSE 189 (244)
Q Consensus 118 ~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~--------~g~i~~~~ 189 (244)
+++++.+.++. ..+++++ ++.+.+++.++|+||||||||||+++|+|++.++ .|.+.+++
T Consensus 3 ~~~nl~~~~~~-~~il~~v-----------sl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g 70 (272)
T PRK13547 3 TADHLHVARRH-RAILRDL-----------SLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNG 70 (272)
T ss_pred EEEEEEEEECC-EeEEecc-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECC
Confidence 35566666543 2467788 7888888889999999999999999999999987 89999988
Q ss_pred CCC---CHHHHHHHhhhcCCCCc
Q psy1371 190 RGL---TDDRLNHLLSVAPQNSI 209 (244)
Q Consensus 190 ~~~---~~~~~~~~~~~~~q~~~ 209 (244)
... ....+++.+++++|+..
T Consensus 71 ~~~~~~~~~~~~~~~~~v~q~~~ 93 (272)
T PRK13547 71 EPLAAIDAPRLARLRAVLPQAAQ 93 (272)
T ss_pred EEcccCCHHHHHhhcEEecccCC
Confidence 543 33456667888998754
No 276
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.09 E-value=4.3e-11 Score=102.39 Aligned_cols=91 Identities=15% Similarity=0.172 Sum_probs=69.5
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC-----CCeEEEEeCCCC
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE-----FGICVLNLSERG 191 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~-----~~~g~i~~~~~~ 191 (244)
+.+++|.+.|+.. .+++++ ++.+++++.++|+||||+|||||+++|+|++. ++.|.+.+++..
T Consensus 11 l~i~~v~~~~~~~-~il~~v-----------sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~ 78 (264)
T PRK14243 11 LRTENLNVYYGSF-LAVKNV-----------WLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKN 78 (264)
T ss_pred EEEeeeEEEECCE-EEeecc-----------eEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEE
Confidence 5678888777542 467888 88888888899999999999999999999876 368999998854
Q ss_pred CC-----HHHHHHHhhhcCCCCceehhhH-hhhh
Q psy1371 192 LT-----DDRLNHLLSVAPQNSIILLEDI-DAAF 219 (244)
Q Consensus 192 ~~-----~~~~~~~~~~~~q~~~lf~dei-d~~~ 219 (244)
.. ...+++.+++++|++.+|...+ |++.
T Consensus 79 i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~ 112 (264)
T PRK14243 79 LYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIA 112 (264)
T ss_pred ccccccChHHHhhhEEEEccCCccccccHHHHHH
Confidence 32 2345677899999876654444 4443
No 277
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.09 E-value=4.2e-11 Score=102.68 Aligned_cols=80 Identities=16% Similarity=0.231 Sum_probs=63.2
Q ss_pred CCCccccChhH--------HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC
Q psy1371 118 PLNSVVLDSGV--------ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE 189 (244)
Q Consensus 118 ~~~~v~~~~~~--------~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~ 189 (244)
.+++|.+.|+. ...+++++ ++.+.+++.++|.||||+|||||+++|+|.+.++.|.+.+++
T Consensus 5 ~~~nl~~~~~~~~~~~~~~~~~il~~v-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g 73 (268)
T PRK10419 5 NVSGLSHHYAHGGLSGKHQHQTVLNNV-----------SLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRG 73 (268)
T ss_pred EEeceEEEecCCccccccCceeeEece-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence 45666666542 23577888 888888888999999999999999999999999999999998
Q ss_pred CCCCH------HHHHHHhhhcCCCC
Q psy1371 190 RGLTD------DRLNHLLSVAPQNS 208 (244)
Q Consensus 190 ~~~~~------~~~~~~~~~~~q~~ 208 (244)
..... ..+++.+++++|++
T Consensus 74 ~~~~~~~~~~~~~~~~~i~~v~q~~ 98 (268)
T PRK10419 74 EPLAKLNRAQRKAFRRDIQMVFQDS 98 (268)
T ss_pred EeccccChhHHHHHHhcEEEEEcCh
Confidence 54421 23567789999875
No 278
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.09 E-value=3e-11 Score=103.75 Aligned_cols=93 Identities=20% Similarity=0.272 Sum_probs=71.9
Q ss_pred CCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC-----CeEEEEeCC
Q psy1371 115 RRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF-----GICVLNLSE 189 (244)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~-----~~g~i~~~~ 189 (244)
+.++++++.+.++. ..+++++ ++.+++++.++|+||||+|||||+++|+|.+.+ ..|.+.+++
T Consensus 24 ~~l~~~nl~~~~~~-~~il~~v-----------s~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g 91 (272)
T PRK14236 24 TALEVRNLNLFYGD-KQALFDI-----------SMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDG 91 (272)
T ss_pred cEEEEEEEEEEECC-eeEeeeE-----------EEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECC
Confidence 34678899888754 3477888 888888888999999999999999999999874 689999988
Q ss_pred CCCC-----HHHHHHHhhhcCCCCceehhhH-hhhh
Q psy1371 190 RGLT-----DDRLNHLLSVAPQNSIILLEDI-DAAF 219 (244)
Q Consensus 190 ~~~~-----~~~~~~~~~~~~q~~~lf~dei-d~~~ 219 (244)
.... ...+++.+++++|+..+|..++ |++.
T Consensus 92 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~ 127 (272)
T PRK14236 92 QNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVV 127 (272)
T ss_pred EECcccccCHHHHhccEEEEecCCccCcccHHHHHH
Confidence 5432 2346778899999876664455 4543
No 279
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.08 E-value=3.7e-11 Score=98.78 Aligned_cols=82 Identities=15% Similarity=0.230 Sum_probs=67.9
Q ss_pred CCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH---
Q psy1371 118 PLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD--- 194 (244)
Q Consensus 118 ~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~--- 194 (244)
+++++.-.|+. -++++++ ++.++.++-++++||||+||||++++|+|..++..|.|.++|.+++.
T Consensus 5 ~v~~l~~~YG~-~~~L~gv-----------sl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~ 72 (237)
T COG0410 5 EVENLSAGYGK-IQALRGV-----------SLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPP 72 (237)
T ss_pred eEEeEeecccc-eeEEeee-----------eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCH
Confidence 45667767765 4577888 77788888899999999999999999999999999999999976643
Q ss_pred -HHHHHHhhhcCCCCcee
Q psy1371 195 -DRLNHLLSVAPQNSIIL 211 (244)
Q Consensus 195 -~~~~~~~~~~~q~~~lf 211 (244)
...+.-++++||..-+|
T Consensus 73 ~~r~r~Gi~~VPegR~iF 90 (237)
T COG0410 73 HERARLGIAYVPEGRRIF 90 (237)
T ss_pred HHHHhCCeEeCcccccch
Confidence 45677799999977676
No 280
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.08 E-value=5.9e-11 Score=101.69 Aligned_cols=82 Identities=15% Similarity=0.125 Sum_probs=63.0
Q ss_pred CCCCccccChhH--------HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeC
Q psy1371 117 RPLNSVVLDSGV--------ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLS 188 (244)
Q Consensus 117 ~~~~~v~~~~~~--------~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~ 188 (244)
+.++++.+.|+. ...+++++ ++.+++++.++|+||||||||||+++|+|.+.|+.|.+.++
T Consensus 5 l~~~~l~~~~~~~~~~~~~~~~~~l~~v-----------sl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~ 73 (267)
T PRK15112 5 LEVRNLSKTFRYRTGWFRRQTVEAVKPL-----------SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLID 73 (267)
T ss_pred EEEeceEEEecCCCCcccccccceeeee-----------eEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEEC
Confidence 446677666531 12477888 78888888899999999999999999999999999999998
Q ss_pred CCCCC---HHHHHHHhhhcCCCCc
Q psy1371 189 ERGLT---DDRLNHLLSVAPQNSI 209 (244)
Q Consensus 189 ~~~~~---~~~~~~~~~~~~q~~~ 209 (244)
+...+ ....++.+++++|++.
T Consensus 74 g~~~~~~~~~~~~~~i~~v~q~~~ 97 (267)
T PRK15112 74 DHPLHFGDYSYRSQRIRMIFQDPS 97 (267)
T ss_pred CEECCCCchhhHhccEEEEecCch
Confidence 85443 2234456888998753
No 281
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.08 E-value=1.9e-11 Score=101.84 Aligned_cols=80 Identities=19% Similarity=0.266 Sum_probs=60.9
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHHHH
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRLN 198 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~~~ 198 (244)
++++.+.++. ..+++++ ++.+.+++.++|.||||+|||||+++|+|.++++.|.+.+++....... +
T Consensus 3 l~~v~~~~~~-~~~l~~v-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~-~ 69 (223)
T TIGR03740 3 TKNLSKRFGK-QTAVNNI-----------SLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD-L 69 (223)
T ss_pred EEeEEEEECC-EEEEeee-----------EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc-c
Confidence 4555555543 3466777 7788888889999999999999999999999999999999886543322 2
Q ss_pred HHhhhcCCCCcee
Q psy1371 199 HLLSVAPQNSIIL 211 (244)
Q Consensus 199 ~~~~~~~q~~~lf 211 (244)
+.+++++|++.++
T Consensus 70 ~~~~~~~q~~~~~ 82 (223)
T TIGR03740 70 HKIGSLIESPPLY 82 (223)
T ss_pred ccEEEEcCCCCcc
Confidence 4577888876554
No 282
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.08 E-value=1.8e-11 Score=99.86 Aligned_cols=82 Identities=17% Similarity=0.208 Sum_probs=63.0
Q ss_pred CCCccccChhH---HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhccc--CCCeEEEEeCCCCC
Q psy1371 118 PLNSVVLDSGV---ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGEL--EFGICVLNLSERGL 192 (244)
Q Consensus 118 ~~~~v~~~~~~---~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~--~~~~g~i~~~~~~~ 192 (244)
.++++.+.|+. ...+++++ ++.+.+++.++|+||||+|||||+++|+|.+ +++.|.+.+++...
T Consensus 5 ~~~~l~~~~~~~~~~~~~l~~v-----------s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 5 TWKNLNYTVPVKGGKRQLLNNI-----------SGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEeeeEEEecCCCCceEeEEcc-----------EEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 45666666642 13467777 7788888889999999999999999999976 47899999988655
Q ss_pred CHHHHHHHhhhcCCCCcee
Q psy1371 193 TDDRLNHLLSVAPQNSIIL 211 (244)
Q Consensus 193 ~~~~~~~~~~~~~q~~~lf 211 (244)
. ..+++.+++++|...++
T Consensus 74 ~-~~~~~~i~~~~q~~~~~ 91 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHS 91 (192)
T ss_pred H-HHhhhceEEecccCccc
Confidence 4 45567788888865554
No 283
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.08 E-value=6.9e-11 Score=100.77 Aligned_cols=92 Identities=21% Similarity=0.258 Sum_probs=69.1
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC------
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE------ 189 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~------ 189 (244)
-+.++++.+.++. ..+++++ ++.+.+++.++|+||||+|||||+++|+|.+.++.|.+.++|
T Consensus 10 ~i~~~~~~~~~~~-~~~l~~v-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g 77 (257)
T PRK14246 10 VFNISRLYLYIND-KAILKDI-----------TIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFG 77 (257)
T ss_pred heeeeeEEEecCC-ceeEece-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECC
Confidence 3667888888765 3477888 888888888999999999999999999999999887665554
Q ss_pred CCC---CHHHHHHHhhhcCCCCceehh-hH-hhhh
Q psy1371 190 RGL---TDDRLNHLLSVAPQNSIILLE-DI-DAAF 219 (244)
Q Consensus 190 ~~~---~~~~~~~~~~~~~q~~~lf~d-ei-d~~~ 219 (244)
.+. ....+++.+++++|++.++.+ ++ |++.
T Consensus 78 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~ 112 (257)
T PRK14246 78 KDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIA 112 (257)
T ss_pred cccccCCHHHHhcceEEEccCCccCCCCcHHHHHH
Confidence 222 234567778999988766632 44 4443
No 284
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.08 E-value=3.7e-11 Score=102.05 Aligned_cols=91 Identities=21% Similarity=0.243 Sum_probs=68.1
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC-----CeEEEEeCCCC
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF-----GICVLNLSERG 191 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~-----~~g~i~~~~~~ 191 (244)
+.++++.+.++. ..+++++ ++.+++++.++|+||||||||||+++|+|+.++ +.|.+.+++..
T Consensus 7 i~~~~l~~~~~~-~~~l~~v-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~ 74 (253)
T PRK14261 7 LSTKNLNLWYGE-KHALYDI-----------TISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGEN 74 (253)
T ss_pred EEEeeeEEEECC-eeeeeee-----------EEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEE
Confidence 456778777653 3477888 888888888999999999999999999998753 37999998854
Q ss_pred CC-----HHHHHHHhhhcCCCCceehhhH-hhhh
Q psy1371 192 LT-----DDRLNHLLSVAPQNSIILLEDI-DAAF 219 (244)
Q Consensus 192 ~~-----~~~~~~~~~~~~q~~~lf~dei-d~~~ 219 (244)
.. ....++.+++++|+..+|...+ |++.
T Consensus 75 ~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~ 108 (253)
T PRK14261 75 IMDSGADVVALRRKIGMVFQRPNPFPKSIYENVA 108 (253)
T ss_pred ccccccchhhhhceEEEEecCCccCcccHHHHHH
Confidence 42 2345667889999876664444 4443
No 285
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.07 E-value=6.4e-10 Score=94.99 Aligned_cols=100 Identities=15% Similarity=0.244 Sum_probs=59.4
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCc---ceEEEcCCCCChhHHHHHHhcccCC----Ce-EEEEeCC-
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRR---GYLLYGPPGCGKSSFITALAGELEF----GI-CVLNLSE- 189 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~---gi~l~Gp~GsGKTtl~~~la~~~~~----~~-g~i~~~~- 189 (244)
++++......|+.+ +.+..++.........|+.... .++|+|||||||||+++++++.+.. +. -.+.++.
T Consensus 5 l~~~~Gl~~vk~~i-~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALI-KEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHH-HHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 44555555555544 4443443333333345554333 3899999999999999999986521 11 1122221
Q ss_pred ------CCCCHHHHHHHhhhcCCCCceehhhHhhhhc
Q psy1371 190 ------RGLTDDRLNHLLSVAPQNSIILLEDIDAAFV 220 (244)
Q Consensus 190 ------~~~~~~~~~~~~~~~~q~~~lf~deid~~~~ 220 (244)
.+.+...+++.+..+. +.+||+||+|.+..
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~-~~VL~IDE~~~L~~ 119 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL-GGVLFIDEAYSLAR 119 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc-CCEEEEechhhhcc
Confidence 1223445566666554 57999999999864
No 286
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.06 E-value=9.8e-12 Score=106.80 Aligned_cols=82 Identities=21% Similarity=0.226 Sum_probs=62.9
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHH
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDR 196 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~ 196 (244)
+.++++.+.|+....+++++ ++.++.|+.++|+||||+|||||+++|+|++.++.|.+.+++.......
T Consensus 7 l~~~~l~~~~~~~~~il~~v-----------sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~ 75 (272)
T PRK15056 7 IVVNDVTVTWRNGHTALRDA-----------SFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQAL 75 (272)
T ss_pred EEEEeEEEEecCCcEEEEee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhh
Confidence 45677777664223467777 7888888889999999999999999999999999999999986543322
Q ss_pred HHHHhhhcCCCCc
Q psy1371 197 LNHLLSVAPQNSI 209 (244)
Q Consensus 197 ~~~~~~~~~q~~~ 209 (244)
.++.+++++|++.
T Consensus 76 ~~~~i~~v~q~~~ 88 (272)
T PRK15056 76 QKNLVAYVPQSEE 88 (272)
T ss_pred ccceEEEeccccc
Confidence 2235788888653
No 287
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.06 E-value=4.7e-11 Score=103.30 Aligned_cols=90 Identities=20% Similarity=0.279 Sum_probs=69.8
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC-----CCeEEEEeCCCC
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE-----FGICVLNLSERG 191 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~-----~~~g~i~~~~~~ 191 (244)
+.++++.+.|+. ..+++++ ++.+.+++.++|+||||||||||+++|+|++. ++.|.+.+++..
T Consensus 40 l~i~~l~~~~~~-~~il~~i-----------s~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~ 107 (285)
T PRK14254 40 IEARDLNVFYGD-EQALDDV-----------SMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKN 107 (285)
T ss_pred EEEEEEEEEECC-EeeEeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEE
Confidence 678899888754 3577888 88888888899999999999999999999987 578999998854
Q ss_pred CC-----HHHHHHHhhhcCCCCceehhhH-hhh
Q psy1371 192 LT-----DDRLNHLLSVAPQNSIILLEDI-DAA 218 (244)
Q Consensus 192 ~~-----~~~~~~~~~~~~q~~~lf~dei-d~~ 218 (244)
.. ...+++.+++++|+..+|...+ |++
T Consensus 108 i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl 140 (285)
T PRK14254 108 VYDADVDPVALRRRIGMVFQKPNPFPKSIYDNV 140 (285)
T ss_pred ccccccchHhhhccEEEEecCCccCcCCHHHHH
Confidence 32 2345677899998866553333 444
No 288
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.06 E-value=5.9e-11 Score=104.57 Aligned_cols=114 Identities=14% Similarity=0.146 Sum_probs=73.9
Q ss_pred CCCccccChhHH---HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC----CeEEEEeCCC
Q psy1371 118 PLNSVVLDSGVA---DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF----GICVLNLSER 190 (244)
Q Consensus 118 ~~~~v~~~~~~~---~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~----~~g~i~~~~~ 190 (244)
+++++...|+.. ..+++++ ++.+..++.++|+||||||||||+++|+|++.+ +.|.+.+++.
T Consensus 5 ~v~~l~~~~~~~~~~~~~l~~v-----------sl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~ 73 (326)
T PRK11022 5 NVDKLSVHFGDESAPFRAVDRI-----------SYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQ 73 (326)
T ss_pred EEeCeEEEECCCCccEEEEeee-----------EEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCE
Confidence 345555554321 2367788 888888888999999999999999999999873 6899999885
Q ss_pred CC---CHHHHHH----HhhhcCCCCce--e-----hhhH-hhhhcccCcCcccHHHHHHHHHHhhhc
Q psy1371 191 GL---TDDRLNH----LLSVAPQNSII--L-----LEDI-DAAFVTREESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 191 ~~---~~~~~~~----~~~~~~q~~~l--f-----~dei-d~~~~~r~~~~~~~~~~~~~~l~~~~~ 242 (244)
++ +.+.+++ .+++++|++.. . .+.+ +.+...++......++....+++++++
T Consensus 74 ~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL 140 (326)
T PRK11022 74 DLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGI 140 (326)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCC
Confidence 43 3333433 48899987632 1 2233 333222122222334556677777766
No 289
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.05 E-value=4.5e-11 Score=96.44 Aligned_cols=76 Identities=25% Similarity=0.383 Sum_probs=57.3
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC---CHH
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL---TDD 195 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~---~~~ 195 (244)
++++.+.|+. ..+++++ ++.+.+++.++|.||||+|||||+++|+|++.++.|.+.+++.+. ...
T Consensus 2 ~~~l~~~~~~-~~~l~~~-----------~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~ 69 (180)
T cd03214 2 VENLSVGYGG-RTVLDDL-----------SLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPK 69 (180)
T ss_pred eeEEEEEECC-eeeEeee-----------EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHH
Confidence 4455655543 3467777 788888888999999999999999999999999999999987443 233
Q ss_pred HHHHHhhhcCC
Q psy1371 196 RLNHLLSVAPQ 206 (244)
Q Consensus 196 ~~~~~~~~~~q 206 (244)
.+++.+++++|
T Consensus 70 ~~~~~i~~~~q 80 (180)
T cd03214 70 ELARKIAYVPQ 80 (180)
T ss_pred HHHHHHhHHHH
Confidence 44455566555
No 290
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.05 E-value=4.2e-11 Score=105.64 Aligned_cols=61 Identities=21% Similarity=0.264 Sum_probs=51.5
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---HH---HHHHHhhhcCCCC
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT---DD---RLNHLLSVAPQNS 208 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~---~~---~~~~~~~~~~q~~ 208 (244)
++.+..++.++|+||||||||||+++|+|++.++.|.+.+++.+.. .. .+++.+++++|++
T Consensus 41 sl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~ 107 (331)
T PRK15079 41 TLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDP 107 (331)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCc
Confidence 7778888889999999999999999999999999999999885442 22 3456789999985
No 291
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.05 E-value=4.7e-11 Score=101.19 Aligned_cols=90 Identities=22% Similarity=0.252 Sum_probs=67.2
Q ss_pred CCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC-----CCeEEEEeCCCCC
Q psy1371 118 PLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE-----FGICVLNLSERGL 192 (244)
Q Consensus 118 ~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~-----~~~g~i~~~~~~~ 192 (244)
.+++|.+.++. ..+++++ ++.++.++.++|.||||+|||||+++|+|+.. ++.|.+.+++...
T Consensus 5 ~~~~v~~~~~~-~~~l~~~-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i 72 (250)
T PRK14266 5 EVENLNTYFDD-AHILKNV-----------NLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDI 72 (250)
T ss_pred EEEeEEEEeCC-eEEEeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEc
Confidence 35566666543 2467777 88888888899999999999999999999864 3789999988554
Q ss_pred C-----HHHHHHHhhhcCCCCceehhhH-hhhh
Q psy1371 193 T-----DDRLNHLLSVAPQNSIILLEDI-DAAF 219 (244)
Q Consensus 193 ~-----~~~~~~~~~~~~q~~~lf~dei-d~~~ 219 (244)
+ ...+++.+++++|++.+|...+ |++.
T Consensus 73 ~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~ 105 (250)
T PRK14266 73 YDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVA 105 (250)
T ss_pred ccccccHHHHhhheEEEecCCccCcchHHHHHH
Confidence 2 2346778999999877664444 5554
No 292
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.05 E-value=6e-11 Score=94.32 Aligned_cols=95 Identities=16% Similarity=0.120 Sum_probs=69.4
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHH-HHHHHhhhcCCCCcee--hhhHhhhhcccCc
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDD-RLNHLLSVAPQNSIIL--LEDIDAAFVTREE 224 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~-~~~~~~~~~~q~~~lf--~deid~~~~~r~~ 224 (244)
++.++.++.++++||||+|||||+++|||+..|..|.+.+++.+.+.. ..++-+++++|+.-+| ++-..+++.....
T Consensus 19 dl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P 98 (231)
T COG3840 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSP 98 (231)
T ss_pred EEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCc
Confidence 567788888999999999999999999999999999999999766542 3455678888887777 4444666654432
Q ss_pred C---cccHHHHHHHHHHhhhc
Q psy1371 225 S---SQGLEDIDAAFVTREES 242 (244)
Q Consensus 225 ~---~~~~~~~~~~~l~~~~~ 242 (244)
+ ....++..+..+.|+++
T Consensus 99 ~LkL~a~~r~~v~~aa~~vGl 119 (231)
T COG3840 99 GLKLNAEQREKVEAAAAQVGL 119 (231)
T ss_pred ccccCHHHHHHHHHHHHHhCh
Confidence 2 22334445555566554
No 293
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.05 E-value=6.4e-11 Score=92.25 Aligned_cols=87 Identities=23% Similarity=0.282 Sum_probs=62.2
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCC-------C
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSER-------G 191 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~-------~ 191 (244)
++++.+.++.. .+++++ ++.+++++.+++.||||+|||||+++|+|+++++.|.+.+++. .
T Consensus 3 ~~~l~~~~~~~-~~l~~~-----------~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~ 70 (144)
T cd03221 3 LENLSKTYGGK-LLLKDI-----------SLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ 70 (144)
T ss_pred EEEEEEEECCc-eEEEee-----------EEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc
Confidence 34555554332 355666 7788888889999999999999999999999999999988762 1
Q ss_pred CCHHHHHH---HhhhcCCCCceehhhHhh
Q psy1371 192 LTDDRLNH---LLSVAPQNSIILLEDIDA 217 (244)
Q Consensus 192 ~~~~~~~~---~~~~~~q~~~lf~deid~ 217 (244)
.+....++ ..+.+.++.++++||-.+
T Consensus 71 lS~G~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 71 LSGGEKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 33333222 233455788999888644
No 294
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.05 E-value=5.8e-11 Score=100.95 Aligned_cols=80 Identities=20% Similarity=0.199 Sum_probs=63.7
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC----CeEEEEeCCCCC
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF----GICVLNLSERGL 192 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~----~~g~i~~~~~~~ 192 (244)
+.++++.+.| . ..+++++ ++.+.+++.++|+||||+|||||+++|+|++.+ +.|.+.+++...
T Consensus 5 l~~~~l~~~~-~-~~il~~v-----------sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i 71 (254)
T PRK10418 5 IELRNIALQA-A-QPLVHGV-----------SLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPV 71 (254)
T ss_pred EEEeCeEEEe-c-cceecce-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeec
Confidence 4567888777 2 3577888 888888888999999999999999999999998 889999988655
Q ss_pred CHHHH-HHHhhhcCCCCc
Q psy1371 193 TDDRL-NHLLSVAPQNSI 209 (244)
Q Consensus 193 ~~~~~-~~~~~~~~q~~~ 209 (244)
+.... ++.+++++|++.
T Consensus 72 ~~~~~~~~~i~~v~q~~~ 89 (254)
T PRK10418 72 APCALRGRKIATIMQNPR 89 (254)
T ss_pred cccccccceEEEEecCCc
Confidence 43222 356888998753
No 295
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.05 E-value=4.2e-11 Score=105.51 Aligned_cols=67 Identities=19% Similarity=0.225 Sum_probs=55.6
Q ss_pred HHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---HH---HHHHHhhhc
Q psy1371 131 RILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT---DD---RLNHLLSVA 204 (244)
Q Consensus 131 ~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~---~~---~~~~~~~~~ 204 (244)
.+++++ ++.+..|+.++|+||||||||||+++|+|++.++.|.+.+++.++. .. .+++.++++
T Consensus 29 ~~l~~v-----------sl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v 97 (327)
T PRK11308 29 KALDGV-----------SFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIV 97 (327)
T ss_pred eEEeee-----------EEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEE
Confidence 467777 8888888889999999999999999999999999999999885442 22 345668899
Q ss_pred CCCC
Q psy1371 205 PQNS 208 (244)
Q Consensus 205 ~q~~ 208 (244)
+|++
T Consensus 98 ~Q~~ 101 (327)
T PRK11308 98 FQNP 101 (327)
T ss_pred EcCc
Confidence 9875
No 296
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.04 E-value=4.4e-11 Score=101.46 Aligned_cols=83 Identities=16% Similarity=0.262 Sum_probs=63.5
Q ss_pred CCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCC-----eEEEEeCCCCC
Q psy1371 118 PLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFG-----ICVLNLSERGL 192 (244)
Q Consensus 118 ~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~-----~g~i~~~~~~~ 192 (244)
.++++.+.|+. ..+++++ ++.+.+++.++|+||||+|||||+++|+|.+.++ .|.+.+++...
T Consensus 6 ~~~~l~~~~~~-~~~l~~v-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~ 73 (252)
T PRK14272 6 SAQDVNIYYGD-KQAVKNV-----------NLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDI 73 (252)
T ss_pred EEeeeEEEECC-EEeeccc-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEc
Confidence 35666666643 2467888 7888888889999999999999999999998764 79999988543
Q ss_pred C-----HHHHHHHhhhcCCCCceeh
Q psy1371 193 T-----DDRLNHLLSVAPQNSIILL 212 (244)
Q Consensus 193 ~-----~~~~~~~~~~~~q~~~lf~ 212 (244)
+ ...+++.+++++|++.+|.
T Consensus 74 ~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (252)
T PRK14272 74 YGPRVDPVAMRRRVGMVFQKPNPFP 98 (252)
T ss_pred ccCccCHHHhhceeEEEeccCccCc
Confidence 2 2345667889998766553
No 297
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.04 E-value=1.8e-10 Score=107.10 Aligned_cols=64 Identities=22% Similarity=0.392 Sum_probs=54.5
Q ss_pred CCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeC
Q psy1371 114 KRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLS 188 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~ 188 (244)
...++++|+....+....+++++ ++.+++|..+++.||||||||||+|+|||+.+...|.+...
T Consensus 390 ~~~i~~~nl~l~~p~~~~ll~~l-----------~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P 453 (604)
T COG4178 390 DHGITLENLSLRTPDGQTLLSEL-----------NFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP 453 (604)
T ss_pred cceeEEeeeeEECCCCCeeeccc-----------eeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC
Confidence 35678888887755545677888 88889999999999999999999999999999888888776
No 298
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.04 E-value=6.3e-11 Score=101.16 Aligned_cols=92 Identities=20% Similarity=0.304 Sum_probs=69.4
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCC-----eEEEEeCCC
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFG-----ICVLNLSER 190 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~-----~g~i~~~~~ 190 (244)
.+.++++.+.|+.. .+++++ ++.+++++.++|.||||+|||||+++|+|+++++ .|.+.+++.
T Consensus 7 ~l~~~nl~~~~~~~-~il~~i-----------s~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~ 74 (261)
T PRK14258 7 AIKVNNLSFYYDTQ-KILEGV-----------SMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQ 74 (261)
T ss_pred eEEEeeEEEEeCCe-eEeece-----------EEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCE
Confidence 35678888877542 467888 8888888889999999999999999999999874 688888775
Q ss_pred CCC-----HHHHHHHhhhcCCCCceehhhH-hhhh
Q psy1371 191 GLT-----DDRLNHLLSVAPQNSIILLEDI-DAAF 219 (244)
Q Consensus 191 ~~~-----~~~~~~~~~~~~q~~~lf~dei-d~~~ 219 (244)
+.+ ...+++.+++++|+..+|..++ |++.
T Consensus 75 ~i~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~ 109 (261)
T PRK14258 75 NIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVA 109 (261)
T ss_pred EhhccccchHHhhccEEEEecCCccCcccHHHHHH
Confidence 432 2345677888898766654455 4443
No 299
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.04 E-value=4.6e-11 Score=101.31 Aligned_cols=90 Identities=20% Similarity=0.206 Sum_probs=65.3
Q ss_pred CCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhccc---CC--CeEEEEeCCCCC
Q psy1371 118 PLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGEL---EF--GICVLNLSERGL 192 (244)
Q Consensus 118 ~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~---~~--~~g~i~~~~~~~ 192 (244)
.++++.+.++. ..+++++ ++.++.++.++|+||||+|||||+++|+|+. ++ +.|.+.+++...
T Consensus 5 ~~~~~~~~~~~-~~~l~~v-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~ 72 (250)
T PRK14245 5 DARDVNFWYGD-FHALKGI-----------SMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNI 72 (250)
T ss_pred EEEEEEEEECC-EeEEeee-----------eEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEec
Confidence 45666666543 2466777 7788888889999999999999999999973 33 479999988554
Q ss_pred C-----HHHHHHHhhhcCCCCceehhhH-hhhh
Q psy1371 193 T-----DDRLNHLLSVAPQNSIILLEDI-DAAF 219 (244)
Q Consensus 193 ~-----~~~~~~~~~~~~q~~~lf~dei-d~~~ 219 (244)
. ...+++.+++++|+..++..++ |++.
T Consensus 73 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~ 105 (250)
T PRK14245 73 YDKGVQVDELRKNVGMVFQRPNPFPKSIFENVA 105 (250)
T ss_pred ccccccHHHHhhheEEEecCCccCcccHHHHHH
Confidence 3 2345677899998866664344 4443
No 300
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.04 E-value=9.7e-11 Score=99.80 Aligned_cols=80 Identities=16% Similarity=0.172 Sum_probs=63.3
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCC-----
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERG----- 191 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~----- 191 (244)
+.++++.+.++. ..+++++ ++.+.+|+.++|.||||||||||+++|+|++.++.|.+.+++..
T Consensus 7 l~~~~l~~~~~~-~~il~~i-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~ 74 (258)
T PRK11701 7 LSVRGLTKLYGP-RKGCRDV-----------SFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRD 74 (258)
T ss_pred EEEeeeEEEcCC-ceeeeee-----------eEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccc
Confidence 457788877754 3477888 88888888899999999999999999999999999999998865
Q ss_pred CC---HHH----HHHHhhhcCCCC
Q psy1371 192 LT---DDR----LNHLLSVAPQNS 208 (244)
Q Consensus 192 ~~---~~~----~~~~~~~~~q~~ 208 (244)
.. ... .++.+++++|+.
T Consensus 75 i~~~~~~~~~~~~~~~i~~v~q~~ 98 (258)
T PRK11701 75 LYALSEAERRRLLRTEWGFVHQHP 98 (258)
T ss_pred cccCCHHHHHHHhhcceEEEeeCc
Confidence 32 222 234578888875
No 301
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.04 E-value=5e-11 Score=110.84 Aligned_cols=83 Identities=16% Similarity=0.125 Sum_probs=64.4
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT--- 193 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~--- 193 (244)
++++++.+.|+. ..+++++ ++.+..++.++|+||||||||||+++|+|++.++.|.+.+++.+..
T Consensus 5 i~~~~l~~~~~~-~~~l~~i-----------s~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~ 72 (501)
T PRK10762 5 LQLKGIDKAFPG-VKALSGA-----------ALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNG 72 (501)
T ss_pred EEEeeeEEEeCC-eEEeeee-----------eEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC
Confidence 456777777754 3477888 8888888889999999999999999999999999999999885432
Q ss_pred HHH-HHHHhhhcCCCCcee
Q psy1371 194 DDR-LNHLLSVAPQNSIIL 211 (244)
Q Consensus 194 ~~~-~~~~~~~~~q~~~lf 211 (244)
... .++.+++++|+..++
T Consensus 73 ~~~~~~~~i~~v~q~~~~~ 91 (501)
T PRK10762 73 PKSSQEAGIGIIHQELNLI 91 (501)
T ss_pred HHHHHhCCEEEEEcchhcc
Confidence 222 345588899875444
No 302
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.04 E-value=6.1e-11 Score=95.86 Aligned_cols=75 Identities=15% Similarity=0.185 Sum_probs=59.7
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT--- 193 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~--- 193 (244)
++++++.+.+ +++++ ++.+++++.++|.||||+|||||+++|+|.++++.|.+.+++.+..
T Consensus 5 l~~~~l~~~~-----~l~~v-----------s~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~ 68 (182)
T cd03215 5 LEVRGLSVKG-----AVRDV-----------SFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRS 68 (182)
T ss_pred EEEeccEEEe-----eecce-----------EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccC
Confidence 3456666655 56777 7888888889999999999999999999999999999999985443
Q ss_pred -HHHHHHHhhhcCCC
Q psy1371 194 -DDRLNHLLSVAPQN 207 (244)
Q Consensus 194 -~~~~~~~~~~~~q~ 207 (244)
....++.+++++|+
T Consensus 69 ~~~~~~~~i~~~~q~ 83 (182)
T cd03215 69 PRDAIRAGIAYVPED 83 (182)
T ss_pred HHHHHhCCeEEecCC
Confidence 22345668888876
No 303
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.04 E-value=1.1e-10 Score=96.68 Aligned_cols=63 Identities=17% Similarity=0.169 Sum_probs=51.7
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC-------HHHHHHHhhhcCCCCcee
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT-------DDRLNHLLSVAPQNSIIL 211 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~-------~~~~~~~~~~~~q~~~lf 211 (244)
++.+.+ +-++|+||||+|||||+++|+|++.++.|.+.+++.... ....++.+++++|+..++
T Consensus 18 sl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 87 (214)
T cd03297 18 DFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALF 87 (214)
T ss_pred eEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccC
Confidence 777778 888999999999999999999999999999999885432 123456788899886665
No 304
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.04 E-value=8.2e-11 Score=99.79 Aligned_cols=91 Identities=12% Similarity=0.116 Sum_probs=68.0
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC--C---CeEEEEeCCCC
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE--F---GICVLNLSERG 191 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~--~---~~g~i~~~~~~ 191 (244)
+.++++.+.|+. ..+++++ ++.+.+|+.++|+||||||||||+++|+|... + +.|.+.+++..
T Consensus 6 l~~~~l~~~~~~-~~~l~~~-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~ 73 (252)
T PRK14239 6 LQVSDLSVYYNK-KKALNSV-----------SLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHN 73 (252)
T ss_pred EEEEeeEEEECC-eeeeeee-----------eEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEE
Confidence 456778777754 3477888 88888888899999999999999999999853 5 37999998854
Q ss_pred CC-----HHHHHHHhhhcCCCCceehhhH-hhhh
Q psy1371 192 LT-----DDRLNHLLSVAPQNSIILLEDI-DAAF 219 (244)
Q Consensus 192 ~~-----~~~~~~~~~~~~q~~~lf~dei-d~~~ 219 (244)
.. ...+++.+++++|++.+|...+ |++.
T Consensus 74 ~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~ 107 (252)
T PRK14239 74 IYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVV 107 (252)
T ss_pred CcCcccchHhhhhcEEEEecCCccCcCcHHHHHH
Confidence 32 2345677899999876663344 5443
No 305
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.03 E-value=2.2e-11 Score=96.81 Aligned_cols=61 Identities=18% Similarity=0.228 Sum_probs=50.5
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCC
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERG 191 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~ 191 (244)
++++.+.|+. ..+++++ ++.+++++.++|.||||+|||||+++|+|++.++.|.+.+++..
T Consensus 3 ~~~l~~~~~~-~~vl~~i-----------~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~ 63 (163)
T cd03216 3 LRGITKRFGG-VKALDGV-----------SLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKE 63 (163)
T ss_pred EEEEEEEECC-eEEEeee-----------EEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE
Confidence 4566666643 2466777 78888888899999999999999999999999999999998743
No 306
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.03 E-value=9e-11 Score=100.97 Aligned_cols=92 Identities=20% Similarity=0.251 Sum_probs=69.9
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC-----CeEEEEeCCC
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF-----GICVLNLSER 190 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~-----~~g~i~~~~~ 190 (244)
.+.++++.+.++.+ .+++++ ++.+++++.++|+||||+|||||+++|+|++.+ ..|.+.+++.
T Consensus 20 ~l~~~nl~~~~~~~-~~l~~v-----------s~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 87 (274)
T PRK14265 20 VFEVEGVKVFYGGF-LALVDV-----------HLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDR 87 (274)
T ss_pred eEEEeeEEEEeCCe-EEEeee-----------eeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCE
Confidence 46678888887643 477888 888888888999999999999999999999863 4799999885
Q ss_pred CCC-----HHHHHHHhhhcCCCCceehhhH-hhhh
Q psy1371 191 GLT-----DDRLNHLLSVAPQNSIILLEDI-DAAF 219 (244)
Q Consensus 191 ~~~-----~~~~~~~~~~~~q~~~lf~dei-d~~~ 219 (244)
+.. ...+++.+++++|++.+|...+ |++.
T Consensus 88 ~l~~~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~ 122 (274)
T PRK14265 88 NIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIA 122 (274)
T ss_pred ecccccchhHHHhhcEEEEccCCccccccHHHHHH
Confidence 542 2345677899999876653344 4443
No 307
>KOG0742|consensus
Probab=99.02 E-value=1.2e-09 Score=96.59 Aligned_cols=120 Identities=24% Similarity=0.411 Sum_probs=83.9
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCC-CCC-
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSER-GLT- 193 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~-~~~- 193 (244)
+..+++|++++.....+ +++...-.+.+. .-.+-+.+++|||||+|||..+|-||+..+.+.......+. .+.
T Consensus 351 k~pl~~ViL~psLe~Ri-e~lA~aTaNTK~----h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~ 425 (630)
T KOG0742|consen 351 KDPLEGVILHPSLEKRI-EDLAIATANTKK----HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGA 425 (630)
T ss_pred CCCcCCeecCHHHHHHH-HHHHHHhccccc----ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccch
Confidence 44589999998765544 665443322211 12234679999999999999999999988887666655552 222
Q ss_pred --HHHHHHHhhhcCC---CCceehhhHhhhhcccCc--CcccHHHHHHHHHHhh
Q psy1371 194 --DDRLNHLLSVAPQ---NSIILLEDIDAAFVTREE--SSQGLEDIDAAFVTRE 240 (244)
Q Consensus 194 --~~~~~~~~~~~~q---~~~lf~deid~~~~~r~~--~~~~~~~~~~~~l~~~ 240 (244)
-..+++.|+++.. .-+||+||.|.++..|.. .+...+...++||-|-
T Consensus 426 qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRT 479 (630)
T KOG0742|consen 426 QAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT 479 (630)
T ss_pred HHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHh
Confidence 2468889999873 468899999999988864 3445567777777664
No 308
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.02 E-value=2.5e-10 Score=96.11 Aligned_cols=64 Identities=17% Similarity=0.141 Sum_probs=50.0
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC--HHHHHHHhhhcC-CCCcee
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT--DDRLNHLLSVAP-QNSIIL 211 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~--~~~~~~~~~~~~-q~~~lf 211 (244)
++.+++++.++|.||||+|||||+++|+|.+.|+.|.+.+++.... ...+++.+++++ |...++
T Consensus 41 s~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 107 (236)
T cd03267 41 SFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLW 107 (236)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccC
Confidence 6677778889999999999999999999999999999999874322 223556678876 444343
No 309
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.01 E-value=1.1e-10 Score=95.30 Aligned_cols=60 Identities=17% Similarity=0.187 Sum_probs=49.4
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHhhhcCCCC
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRLNHLLSVAPQNS 208 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~q~~ 208 (244)
++.+++++.++|.||||||||||+++|+|...++.|.+.+++.+..... ++.+++++|..
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~-~~~~~~~~~~~ 79 (195)
T PRK13541 20 SITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA-KPYCTYIGHNL 79 (195)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh-hhhEEeccCCc
Confidence 7778888889999999999999999999999999999999986654322 34467777654
No 310
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.01 E-value=1.3e-10 Score=89.10 Aligned_cols=64 Identities=25% Similarity=0.399 Sum_probs=53.1
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH---HHHHHHhhhcCCCCcee
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD---DRLNHLLSVAPQNSIIL 211 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~---~~~~~~~~~~~q~~~lf 211 (244)
++.+++++.++|+||||||||||+++|+|.+.++.|.+.+++.+... ...++.+++++|...++
T Consensus 5 ~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 71 (137)
T PF00005_consen 5 SLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLF 71 (137)
T ss_dssp EEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHH
T ss_pred EEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccc
Confidence 45667778899999999999999999999999999999999854433 56778888888874444
No 311
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.00 E-value=2.2e-10 Score=97.26 Aligned_cols=80 Identities=19% Similarity=0.188 Sum_probs=61.4
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCC-----
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERG----- 191 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~----- 191 (244)
+.++++.+.|+. ..+++++ ++.++.++.++|.||||||||||+++|+|.+.++.|.+.+++..
T Consensus 4 l~~~~l~~~~~~-~~~l~~i-----------sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~ 71 (253)
T TIGR02323 4 LQVSGLSKSYGG-GKGCRDV-----------SFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELE 71 (253)
T ss_pred EEEeeeEEEeCC-ceEeecc-----------eEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccc
Confidence 456777777653 2467788 88888888899999999999999999999999999999998754
Q ss_pred CC---HHH----HHHHhhhcCCCC
Q psy1371 192 LT---DDR----LNHLLSVAPQNS 208 (244)
Q Consensus 192 ~~---~~~----~~~~~~~~~q~~ 208 (244)
.. ... +++.+++++|++
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~ 95 (253)
T TIGR02323 72 LYQLSEAERRRLMRTEWGFVHQNP 95 (253)
T ss_pred cccCCHHHHHHhhhcceEEEEeCc
Confidence 22 121 234578888765
No 312
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.00 E-value=1.4e-10 Score=98.37 Aligned_cols=87 Identities=22% Similarity=0.192 Sum_probs=65.5
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC--C---CeEEEEeCCCC
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE--F---GICVLNLSERG 191 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~--~---~~g~i~~~~~~ 191 (244)
+.++++.+.++. ..+++++ ++.+.+++-++|+||||+|||||+++|+|... + +.|.+.+++..
T Consensus 6 l~~~~l~~~~~~-~~~l~~v-----------s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~ 73 (252)
T PRK14255 6 ITSSDVHLFYGK-FEALKGI-----------DLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQN 73 (252)
T ss_pred EEEEeEEEEECC-eeEEecc-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEE
Confidence 557788877754 3477888 77888888899999999999999999999865 3 37999998854
Q ss_pred CC-----HHHHHHHhhhcCCCCceehhhH
Q psy1371 192 LT-----DDRLNHLLSVAPQNSIILLEDI 215 (244)
Q Consensus 192 ~~-----~~~~~~~~~~~~q~~~lf~dei 215 (244)
.. ...+++.+++++|++.+|..++
T Consensus 74 ~~~~~~~~~~~~~~i~~~~q~~~~~~~tv 102 (252)
T PRK14255 74 IYAPNEDVVQLRKQVGMVFQQPNPFPFSI 102 (252)
T ss_pred cccccccHHHhcCeEEEEECCCccCCCcH
Confidence 42 2345567889998766553333
No 313
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.00 E-value=1.6e-10 Score=98.84 Aligned_cols=92 Identities=18% Similarity=0.250 Sum_probs=70.5
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC-----CeEEEEeCCC
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF-----GICVLNLSER 190 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~-----~~g~i~~~~~ 190 (244)
.+.++++.+.++.+ .+++++ ++.+.+++.++|+||||||||||+++|+|+..+ +.|.+.+++.
T Consensus 16 ~l~~~~l~~~~~~~-~vl~~v-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~ 83 (265)
T PRK14252 16 KSEVNKLNFYYGGY-QALKNI-----------NMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPD 83 (265)
T ss_pred eEEEEEEEEEECCe-eeeeee-----------EEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCc
Confidence 46678888887643 578888 888888888999999999999999999999874 6899998774
Q ss_pred CCC-------HHHHHHHhhhcCCCCceehhhH-hhhh
Q psy1371 191 GLT-------DDRLNHLLSVAPQNSIILLEDI-DAAF 219 (244)
Q Consensus 191 ~~~-------~~~~~~~~~~~~q~~~lf~dei-d~~~ 219 (244)
+.. ...+++.+++++|++.+|...+ |++.
T Consensus 84 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~ 120 (265)
T PRK14252 84 NVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVA 120 (265)
T ss_pred cccccccccCHHHHhccEEEEccCCcCCcchHHHHHH
Confidence 432 2345677889998876664444 4443
No 314
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.99 E-value=3.8e-10 Score=94.55 Aligned_cols=62 Identities=23% Similarity=0.160 Sum_probs=51.1
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCC----CeEEEEeCCCCCCHHHH-HHHhhhcCCCCc
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEF----GICVLNLSERGLTDDRL-NHLLSVAPQNSI 209 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~----~~g~i~~~~~~~~~~~~-~~~~~~~~q~~~ 209 (244)
++.+++++.++|.||||+|||||+++|+|++.+ +.|.+.+++........ ++.+++++|++.
T Consensus 6 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~ 72 (230)
T TIGR02770 6 NLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPR 72 (230)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCch
Confidence 677778888999999999999999999999998 89999999866543333 346888888763
No 315
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.99 E-value=5.5e-10 Score=100.75 Aligned_cols=95 Identities=13% Similarity=0.143 Sum_probs=64.2
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---HHHH----HHHhhhcCCCCceehh-hH-hhh
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT---DDRL----NHLLSVAPQNSIILLE-DI-DAA 218 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~---~~~~----~~~~~~~~q~~~lf~d-ei-d~~ 218 (244)
++.++.++-++|+||||||||||+++|+|++.|+.|.+.+++.+.. ...+ ++.+++++|+..+|.. ++ |++
T Consensus 48 sl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl 127 (400)
T PRK10070 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNT 127 (400)
T ss_pred EEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHH
Confidence 5667777779999999999999999999999999999999985432 2222 2468899998766632 33 444
Q ss_pred hcc---cCcCcccHHHHHHHHHHhhhc
Q psy1371 219 FVT---REESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 219 ~~~---r~~~~~~~~~~~~~~l~~~~~ 242 (244)
... ++......++....++.++++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~e~L~~~gL 154 (400)
T PRK10070 128 AFGMELAGINAEERREKALDALRQVGL 154 (400)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 321 221222223334556666655
No 316
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.99 E-value=1.7e-10 Score=98.52 Aligned_cols=90 Identities=16% Similarity=0.093 Sum_probs=66.0
Q ss_pred CCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC-----CeEEEEeCCCCC
Q psy1371 118 PLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF-----GICVLNLSERGL 192 (244)
Q Consensus 118 ~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~-----~~g~i~~~~~~~ 192 (244)
..+.+...|+. ..+++++ ++.+++++.++|.||||+|||||+++|+|++.+ +.|.+.+++.+.
T Consensus 10 ~~~~~~~~~~~-~~~l~~v-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i 77 (261)
T PRK14263 10 DCKLDKIFYGN-FMAVRDS-----------HVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDV 77 (261)
T ss_pred EEEeEEEEeCC-EEEEeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEec
Confidence 34444444432 2466777 888888888999999999999999999999976 689999988544
Q ss_pred C-----HHHHHHHhhhcCCCCceehhhH-hhhh
Q psy1371 193 T-----DDRLNHLLSVAPQNSIILLEDI-DAAF 219 (244)
Q Consensus 193 ~-----~~~~~~~~~~~~q~~~lf~dei-d~~~ 219 (244)
. ...+++.+++++|++.+|..++ |++.
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~ 110 (261)
T PRK14263 78 YGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVA 110 (261)
T ss_pred cccccchHhhhhceEEEecCCccccccHHHHHH
Confidence 2 2345677899998876663333 5443
No 317
>KOG0054|consensus
Probab=98.99 E-value=2.6e-10 Score=114.47 Aligned_cols=80 Identities=21% Similarity=0.306 Sum_probs=67.3
Q ss_pred HHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHhhhcCCCCcee
Q psy1371 132 ILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRLNHLLSVAPQNSIIL 211 (244)
Q Consensus 132 ~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~q~~~lf 211 (244)
.+++| ++.++.|+-++++||.|||||||+.+|.|+++...|.+.++|. ++|++|.+.++
T Consensus 536 tL~dI-----------n~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs----------iaYv~Q~pWI~ 594 (1381)
T KOG0054|consen 536 TLKDI-----------NFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS----------VAYVPQQPWIQ 594 (1381)
T ss_pred cccce-----------eEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe----------EEEeccccHhh
Confidence 67888 7788888889999999999999999999999999999998874 88999999999
Q ss_pred hhhH-hhhhcccCcCcccHHHH
Q psy1371 212 LEDI-DAAFVTREESSQGLEDI 232 (244)
Q Consensus 212 ~dei-d~~~~~r~~~~~~~~~~ 232 (244)
..++ ||+..+.+......+++
T Consensus 595 ngTvreNILFG~~~d~~rY~~V 616 (1381)
T KOG0054|consen 595 NGTVRENILFGSPYDEERYDKV 616 (1381)
T ss_pred CCcHHHhhhcCccccHHHHHHH
Confidence 9888 88887665544444433
No 318
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.99 E-value=1.4e-10 Score=107.91 Aligned_cols=83 Identities=14% Similarity=0.163 Sum_probs=64.9
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC--CeEEEEeCCCCCCH
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF--GICVLNLSERGLTD 194 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~--~~g~i~~~~~~~~~ 194 (244)
+.++++.+.|+. ..+++++ ++.+..++.++|+||||||||||+|+|+|.+++ +.|.+.+++.....
T Consensus 6 l~~~nl~~~~~~-~~il~~i-----------sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~ 73 (506)
T PRK13549 6 LEMKNITKTFGG-VKALDNV-----------SLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQA 73 (506)
T ss_pred EEEeeeEEEeCC-eEeecce-----------eEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCC
Confidence 456788877754 3578888 888888888999999999999999999999986 79999998854432
Q ss_pred ---H-HHHHHhhhcCCCCcee
Q psy1371 195 ---D-RLNHLLSVAPQNSIIL 211 (244)
Q Consensus 195 ---~-~~~~~~~~~~q~~~lf 211 (244)
. ..++.+++++|+..++
T Consensus 74 ~~~~~~~~~~i~~v~q~~~~~ 94 (506)
T PRK13549 74 SNIRDTERAGIAIIHQELALV 94 (506)
T ss_pred CCHHHHHHCCeEEEEeccccC
Confidence 2 2345688999876554
No 319
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.99 E-value=4e-10 Score=100.34 Aligned_cols=92 Identities=16% Similarity=0.144 Sum_probs=64.3
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH-------HHHHHHhhhcCCCCceehh-hH-hhh
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD-------DRLNHLLSVAPQNSIILLE-DI-DAA 218 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~-------~~~~~~~~~~~q~~~lf~d-ei-d~~ 218 (244)
++.++.++-++|+||||||||||+++|+|++.++.|.+.+++..... ...++.+++++|+..+|.. ++ |++
T Consensus 18 sl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl 97 (352)
T PRK11144 18 NLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNL 97 (352)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHH
Confidence 77777888899999999999999999999999999999998854321 2345678999998776632 33 555
Q ss_pred hcccCcCcccHHHHHHHHHHhhhc
Q psy1371 219 FVTREESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 219 ~~~r~~~~~~~~~~~~~~l~~~~~ 242 (244)
...... ..++....+++++++
T Consensus 98 ~~~~~~---~~~~~~~~~l~~~gl 118 (352)
T PRK11144 98 RYGMAK---SMVAQFDKIVALLGI 118 (352)
T ss_pred Hhhhhh---hhHHHHHHHHHHcCC
Confidence 432111 112234455665554
No 320
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.99 E-value=2.4e-10 Score=95.83 Aligned_cols=63 Identities=24% Similarity=0.219 Sum_probs=49.3
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHhhhcCCCCceeh
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRLNHLLSVAPQNSIILL 212 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~q~~~lf~ 212 (244)
++.++.++-++|+||||+|||||+++|+|++.++.|.+.+++........ ..++++|+..++.
T Consensus 5 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~ 67 (230)
T TIGR01184 5 NLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP--DRMVVFQNYSLLP 67 (230)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh--hheEEecCcccCC
Confidence 56677777899999999999999999999999999999998854432111 1368888766553
No 321
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.98 E-value=1.3e-10 Score=108.36 Aligned_cols=83 Identities=14% Similarity=0.145 Sum_probs=64.7
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT--- 193 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~--- 193 (244)
++++++.+.|+. ..+++++ ++.++.|+.++|+||||||||||+++|+|++.++.|.+.+++....
T Consensus 6 l~~~~l~~~~~~-~~il~~v-----------s~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~ 73 (510)
T PRK09700 6 ISMAGIGKSFGP-VHALKSV-----------NLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLD 73 (510)
T ss_pred EEEeeeEEEcCC-eEEeeee-----------eEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCC
Confidence 456777777754 3477888 8888888889999999999999999999999999999999885432
Q ss_pred HHH-HHHHhhhcCCCCcee
Q psy1371 194 DDR-LNHLLSVAPQNSIIL 211 (244)
Q Consensus 194 ~~~-~~~~~~~~~q~~~lf 211 (244)
... .++.+++++|+..++
T Consensus 74 ~~~~~~~~i~~v~q~~~~~ 92 (510)
T PRK09700 74 HKLAAQLGIGIIYQELSVI 92 (510)
T ss_pred HHHHHHCCeEEEeeccccc
Confidence 222 234588899876554
No 322
>PTZ00243 ABC transporter; Provisional
Probab=98.98 E-value=2.8e-10 Score=117.83 Aligned_cols=64 Identities=17% Similarity=0.313 Sum_probs=52.6
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHhhhcCCCCceehhhH-hhhhcc
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRLNHLLSVAPQNSIILLEDI-DAAFVT 221 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~q~~~lf~dei-d~~~~~ 221 (244)
++.+++|+-++|+||||||||||+++|+|++.++.|.+.+. +.+++++|++.++-..+ |++...
T Consensus 680 sl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~----------~~i~yv~Q~~~l~~~Tv~enI~~~ 744 (1560)
T PTZ00243 680 SVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE----------RSIAYVPQQAWIMNATVRGNILFF 744 (1560)
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC----------CeEEEEeCCCccCCCcHHHHHHcC
Confidence 56677777799999999999999999999999999998753 35788898877776666 666543
No 323
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.98 E-value=7e-11 Score=96.97 Aligned_cols=81 Identities=20% Similarity=0.247 Sum_probs=60.9
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcc--cCCCeEEEEeCCCCCC---
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGE--LEFGICVLNLSERGLT--- 193 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~--~~~~~g~i~~~~~~~~--- 193 (244)
++++.+.++. ..+++++ ++.+.+++.++|+||||+|||||+++|+|. +.++.|.+.+++....
T Consensus 3 ~~~l~~~~~~-~~~l~~i-----------s~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~ 70 (200)
T cd03217 3 IKDLHVSVGG-KEILKGV-----------NLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLP 70 (200)
T ss_pred EEEEEEEeCC-EEeeecc-----------ceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCC
Confidence 4566666543 2467787 788888888999999999999999999999 4789999999885432
Q ss_pred HHH-HHHHhhhcCCCCcee
Q psy1371 194 DDR-LNHLLSVAPQNSIIL 211 (244)
Q Consensus 194 ~~~-~~~~~~~~~q~~~lf 211 (244)
... .+..+++++|.+.++
T Consensus 71 ~~~~~~~~i~~v~q~~~~~ 89 (200)
T cd03217 71 PEERARLGIFLAFQYPPEI 89 (200)
T ss_pred HHHHhhCcEEEeecChhhc
Confidence 222 234488888876555
No 324
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.98 E-value=3.9e-10 Score=100.49 Aligned_cols=95 Identities=15% Similarity=0.104 Sum_probs=65.1
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH-------HHHHHHhhhcCCCCceehh-hH-hhh
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD-------DRLNHLLSVAPQNSIILLE-DI-DAA 218 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~-------~~~~~~~~~~~q~~~lf~d-ei-d~~ 218 (244)
++.++.++.++|+||||||||||+++|+|+++++.|.+.+++..... ...++.+++++|+..+|.. ++ |++
T Consensus 17 sl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl 96 (354)
T TIGR02142 17 DFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNL 96 (354)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHH
Confidence 67777888899999999999999999999999999999998854321 1345668899998766632 33 454
Q ss_pred hcccC-cCcccHHHHHHHHHHhhhc
Q psy1371 219 FVTRE-ESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 219 ~~~r~-~~~~~~~~~~~~~l~~~~~ 242 (244)
..... ......++....++.++++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~~gL 121 (354)
T TIGR02142 97 RYGMKRARPSERRISFERVIELLGI 121 (354)
T ss_pred HHHhhccChhHHHHHHHHHHHHcCC
Confidence 43211 1112223334556666654
No 325
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.98 E-value=1.7e-10 Score=101.79 Aligned_cols=81 Identities=19% Similarity=0.206 Sum_probs=61.7
Q ss_pred CCCCccccChhH---HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCC---eEEEEeCCC
Q psy1371 117 RPLNSVVLDSGV---ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFG---ICVLNLSER 190 (244)
Q Consensus 117 ~~~~~v~~~~~~---~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~---~g~i~~~~~ 190 (244)
++++++...+.. ...+++++ ++.+..++.++|+|+||||||||+++|+|++.++ .|.+.+++.
T Consensus 13 L~i~~l~~~~~~~~~~~~~l~~v-----------sl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~ 81 (330)
T PRK09473 13 LDVKDLRVTFSTPDGDVTAVNDL-----------NFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGR 81 (330)
T ss_pred EEEeCeEEEEecCCCCEEEEeee-----------EEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCE
Confidence 456677666531 12367777 8888888889999999999999999999999886 899999985
Q ss_pred CC---CHHHHH----HHhhhcCCCC
Q psy1371 191 GL---TDDRLN----HLLSVAPQNS 208 (244)
Q Consensus 191 ~~---~~~~~~----~~~~~~~q~~ 208 (244)
++ +...++ +.+++++|++
T Consensus 82 ~i~~~~~~~~~~~r~~~i~~v~Q~~ 106 (330)
T PRK09473 82 EILNLPEKELNKLRAEQISMIFQDP 106 (330)
T ss_pred ECCcCCHHHHHHHhcCCEEEEEcCc
Confidence 44 333332 3588899875
No 326
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.97 E-value=1.1e-10 Score=108.45 Aligned_cols=83 Identities=16% Similarity=0.167 Sum_probs=65.2
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT--- 193 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~--- 193 (244)
++++++.+.|+. ..+++++ ++.++.++.++|+||||+|||||+++|+|++.++.|.+.+++.+..
T Consensus 5 l~~~~l~~~~~~-~~il~~i-----------sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~ 72 (501)
T PRK11288 5 LSFDGIGKTFPG-VKALDDI-----------SFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFAS 72 (501)
T ss_pred EEEeeeEEEECC-EEEEeee-----------eEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCC
Confidence 456777777754 3477888 7888888889999999999999999999999999999999885432
Q ss_pred -HHHHHHHhhhcCCCCcee
Q psy1371 194 -DDRLNHLLSVAPQNSIIL 211 (244)
Q Consensus 194 -~~~~~~~~~~~~q~~~lf 211 (244)
...+++.+++++|+..++
T Consensus 73 ~~~~~~~~i~~v~q~~~~~ 91 (501)
T PRK11288 73 TTAALAAGVAIIYQELHLV 91 (501)
T ss_pred HHHHHhCCEEEEEechhcc
Confidence 123456688999876554
No 327
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.97 E-value=8e-10 Score=99.07 Aligned_cols=96 Identities=15% Similarity=0.105 Sum_probs=64.8
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCC----CC---CHHHHH----HHhhhcCCCCceeh-hhH
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSER----GL---TDDRLN----HLLSVAPQNSIILL-EDI 215 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~----~~---~~~~~~----~~~~~~~q~~~lf~-dei 215 (244)
++.++.++-++|+||||||||||+++|+|++.++.|.+.+++. +. +...++ +.+++++|...+|. -++
T Consensus 44 sf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv 123 (382)
T TIGR03415 44 SLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTV 123 (382)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcH
Confidence 5566667779999999999999999999999999999999873 22 223332 35899999876663 233
Q ss_pred -hhhhcc---cCcCcccHHHHHHHHHHhhhcC
Q psy1371 216 -DAAFVT---REESSQGLEDIDAAFVTREESS 243 (244)
Q Consensus 216 -d~~~~~---r~~~~~~~~~~~~~~l~~~~~~ 243 (244)
|++... ++......++....+++++++.
T Consensus 124 ~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~ 155 (382)
T TIGR03415 124 EENVAFGLEMQGMPEAERRKRVDEQLELVGLA 155 (382)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc
Confidence 454422 1222223334456667777653
No 328
>CHL00181 cbbX CbbX; Provisional
Probab=98.96 E-value=2.6e-09 Score=92.45 Aligned_cols=118 Identities=17% Similarity=0.205 Sum_probs=68.2
Q ss_pred ccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCc-c--eEEEcCCCCChhHHHHHHhcccCC-------CeEEEEeCC-
Q psy1371 121 SVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRR-G--YLLYGPPGCGKSSFITALAGELEF-------GICVLNLSE- 189 (244)
Q Consensus 121 ~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~-g--i~l~Gp~GsGKTtl~~~la~~~~~-------~~g~i~~~~- 189 (244)
++....+.|+++.+ +...+...+.....|++.++ + ++|+|||||||||++++++..+.. +...++.++
T Consensus 24 ~l~Gl~~vK~~i~e-~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 24 ELVGLAPVKTRIRE-IAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred hcCCcHHHHHHHHH-HHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 45555556655533 33334445555567766543 3 899999999999999999887531 122222111
Q ss_pred ----CCCCHHHHHHHhhhcCCCCceehhhHhhhhcccCcCcccHHHHHHHHHHhhh
Q psy1371 190 ----RGLTDDRLNHLLSVAPQNSIILLEDIDAAFVTREESSQGLEDIDAAFVTREE 241 (244)
Q Consensus 190 ----~~~~~~~~~~~~~~~~q~~~lf~deid~~~~~r~~~~~~~~~~~~~~l~~~~ 241 (244)
.+.+....++.+..+ .+.+||+||+|.+...+... +...+....++..++
T Consensus 103 ~~~~~g~~~~~~~~~l~~a-~ggVLfIDE~~~l~~~~~~~-~~~~e~~~~L~~~me 156 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKKA-MGGVLFIDEAYYLYKPDNER-DYGSEAIEILLQVME 156 (287)
T ss_pred HHHHhccchHHHHHHHHHc-cCCEEEEEccchhccCCCcc-chHHHHHHHHHHHHh
Confidence 222333445555554 35799999999986543221 122344455555543
No 329
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.96 E-value=2.8e-10 Score=105.59 Aligned_cols=80 Identities=15% Similarity=0.197 Sum_probs=61.1
Q ss_pred CccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---H-H
Q psy1371 120 NSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT---D-D 195 (244)
Q Consensus 120 ~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~---~-~ 195 (244)
+++.+.|+. ..+++++ ++.++.++.++|+||||||||||+++|+|++.++.|.+.+++.... . .
T Consensus 2 ~nl~~~~~~-~~il~~v-----------s~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 69 (491)
T PRK10982 2 SNISKSFPG-VKALDNV-----------NLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKE 69 (491)
T ss_pred CceEEEeCC-EEeeeee-----------eEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHH
Confidence 345555543 2467777 7788888889999999999999999999999999999999885432 2 2
Q ss_pred HHHHHhhhcCCCCcee
Q psy1371 196 RLNHLLSVAPQNSIIL 211 (244)
Q Consensus 196 ~~~~~~~~~~q~~~lf 211 (244)
.+++.+++++|+..++
T Consensus 70 ~~~~~i~~v~q~~~~~ 85 (491)
T PRK10982 70 ALENGISMVHQELNLV 85 (491)
T ss_pred HHhCCEEEEecccccc
Confidence 3455688999876444
No 330
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.96 E-value=2.6e-09 Score=92.42 Aligned_cols=118 Identities=15% Similarity=0.192 Sum_probs=70.6
Q ss_pred ccccChhHHHHHHHHHHHHhcChhhhhhCCCCC---CcceEEEcCCCCChhHHHHHHhcccCC-------CeEEEEeCC-
Q psy1371 121 SVVLDSGVADRILTDIKQFVADPAWYLDRGIPY---RRGYLLYGPPGCGKSSFITALAGELEF-------GICVLNLSE- 189 (244)
Q Consensus 121 ~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~---~~gi~l~Gp~GsGKTtl~~~la~~~~~-------~~g~i~~~~- 189 (244)
++..-.+.|+.+ +.+...+...+...+.|++. +.+++|+||||||||++++++++.+.. +...++..+
T Consensus 23 ~l~Gl~~vk~~i-~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRI-REIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHH-HHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 345555566554 44444455666666777764 346999999999999999999877632 122222111
Q ss_pred ----CCCCHHHHHHHhhhcCCCCceehhhHhhhhcccCcCcccHHHHHHHHHHhhh
Q psy1371 190 ----RGLTDDRLNHLLSVAPQNSIILLEDIDAAFVTREESSQGLEDIDAAFVTREE 241 (244)
Q Consensus 190 ----~~~~~~~~~~~~~~~~q~~~lf~deid~~~~~r~~~~~~~~~~~~~~l~~~~ 241 (244)
.+.+....++.+..+ .+.+||+||++.+...+.. .+...+..+.+++.++
T Consensus 102 ~~~~~g~~~~~~~~~~~~a-~~gvL~iDEi~~L~~~~~~-~~~~~~~~~~Ll~~le 155 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRA-MGGVLFIDEAYYLYRPDNE-RDYGQEAIEILLQVME 155 (284)
T ss_pred hHhhcccchHHHHHHHHHc-cCcEEEEechhhhccCCCc-cchHHHHHHHHHHHHh
Confidence 123334455666655 3489999999988643321 1222344555555554
No 331
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=98.96 E-value=5.1e-10 Score=106.59 Aligned_cols=103 Identities=13% Similarity=0.129 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCC---eEEEEeCCCCCCHHHHHHHhhhcCC
Q psy1371 130 DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFG---ICVLNLSERGLTDDRLNHLLSVAPQ 206 (244)
Q Consensus 130 ~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~---~g~i~~~~~~~~~~~~~~~~~~~~q 206 (244)
+.+++++ ++.+++|+-++|.||||||||||+++|+|...+. .|.+.++|...+...+++.+++++|
T Consensus 38 ~~iL~~v-----------s~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q 106 (617)
T TIGR00955 38 KHLLKNV-----------SGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQ 106 (617)
T ss_pred cccccCC-----------EEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeecc
Confidence 3467777 7777888889999999999999999999998764 7999999977766678889999999
Q ss_pred CCcee-----hhhHhhhhcccCc---CcccHHHHHHHHHHhhhcC
Q psy1371 207 NSIIL-----LEDIDAAFVTREE---SSQGLEDIDAAFVTREESS 243 (244)
Q Consensus 207 ~~~lf-----~deid~~~~~r~~---~~~~~~~~~~~~l~~~~~~ 243 (244)
+..++ .|++...+..+.. ..+..++..+.+++.+++.
T Consensus 107 ~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 151 (617)
T TIGR00955 107 DDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLR 151 (617)
T ss_pred ccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCch
Confidence 87666 3444332222211 2233445667777777653
No 332
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.96 E-value=2.9e-10 Score=105.93 Aligned_cols=83 Identities=18% Similarity=0.208 Sum_probs=65.6
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT--- 193 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~--- 193 (244)
++++++.+.|+. ..+++++ ++.++.|+-++|+||||||||||+++|+|++.++.|.+.+++....
T Consensus 12 l~~~~l~~~~~~-~~il~~v-----------sl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~ 79 (510)
T PRK15439 12 LCARSISKQYSG-VEVLKGI-----------DFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLT 79 (510)
T ss_pred EEEEeEEEEeCC-ceeeeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCC
Confidence 667888888764 3477888 8888888889999999999999999999999999999999885432
Q ss_pred HHHHH-HHhhhcCCCCcee
Q psy1371 194 DDRLN-HLLSVAPQNSIIL 211 (244)
Q Consensus 194 ~~~~~-~~~~~~~q~~~lf 211 (244)
....+ +.+++++|+..++
T Consensus 80 ~~~~~~~~i~~v~q~~~~~ 98 (510)
T PRK15439 80 PAKAHQLGIYLVPQEPLLF 98 (510)
T ss_pred HHHHHhCCEEEEeccCccC
Confidence 22332 3478889876554
No 333
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.96 E-value=2.2e-10 Score=94.97 Aligned_cols=80 Identities=15% Similarity=0.150 Sum_probs=60.2
Q ss_pred CccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH----H
Q psy1371 120 NSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD----D 195 (244)
Q Consensus 120 ~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~----~ 195 (244)
++++...++.. .++++ ++.+..++-++|+||||+||||+.++|+|+|+|+.|.+.+.+.+++. +
T Consensus 8 ~~l~k~FGGl~-Al~~V-----------sl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~ 75 (250)
T COG0411 8 RGLSKRFGGLT-AVNDV-----------SLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHR 75 (250)
T ss_pred ccceeecCCEE-EEece-----------eEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHH
Confidence 44444444432 45666 77777777889999999999999999999999999999999976643 2
Q ss_pred HHHHHhhhcCCCCcee
Q psy1371 196 RLNHLLSVAPQNSIIL 211 (244)
Q Consensus 196 ~~~~~~~~~~q~~~lf 211 (244)
..+.-+...+|..-+|
T Consensus 76 iar~Gi~RTFQ~~rlF 91 (250)
T COG0411 76 IARLGIARTFQITRLF 91 (250)
T ss_pred HHhccceeeccccccc
Confidence 2334466667877776
No 334
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.96 E-value=1.4e-09 Score=90.82 Aligned_cols=59 Identities=17% Similarity=0.213 Sum_probs=49.2
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHhhhcCCCCce
Q psy1371 150 GIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRLNHLLSVAPQNSII 210 (244)
Q Consensus 150 ~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~q~~~l 210 (244)
.+.+|+.++|+||||||||||+++|+|.+.++.|.+.+++.+.. ..++.+++++|++.+
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~--~~~~~i~~v~q~~~~ 60 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG--KGWRHIGYVPQRHEF 60 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch--HhhCcEEEecccccc
Confidence 45677789999999999999999999999999999999986543 245568899987544
No 335
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.95 E-value=1.4e-09 Score=85.09 Aligned_cols=114 Identities=22% Similarity=0.216 Sum_probs=83.6
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCC--CCC---
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSER--GLT--- 193 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~--~~~--- 193 (244)
.+++.+.|+. .+.+-+| .+..+.+..+.+.||+|+|||||+|.+.-+--|..|.+.+.+. +.+
T Consensus 5 v~~in~~yg~-~q~lfdi-----------~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~ 72 (242)
T COG4161 5 LNGINCFYGA-HQALFDI-----------TLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTP 72 (242)
T ss_pred Eccccccccc-chheeee-----------eecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCc
Confidence 4555555654 3455666 7777888889999999999999999998888888999888662 221
Q ss_pred -H---HHHHHHhhhcCCCCcee-----hhhH-hhhhcccCcCcccHHHHHHHHHHhhhcCC
Q psy1371 194 -D---DRLNHLLSVAPQNSIIL-----LEDI-DAAFVTREESSQGLEDIDAAFVTREESSQ 244 (244)
Q Consensus 194 -~---~~~~~~~~~~~q~~~lf-----~dei-d~~~~~r~~~~~~~~~~~~~~l~~~~~~~ 244 (244)
+ ..+|+..++++|..-++ ++++ ++.+..++.+.+...+-...+|.|+.+.|
T Consensus 73 ~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~ 133 (242)
T COG4161 73 SDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKP 133 (242)
T ss_pred cHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhcccc
Confidence 2 35788899999875554 5555 66677777676666677778888877643
No 336
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.95 E-value=3.3e-10 Score=97.81 Aligned_cols=74 Identities=24% Similarity=0.292 Sum_probs=59.2
Q ss_pred CCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC
Q psy1371 114 KRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT 193 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~ 193 (244)
...+.++++.+.. ..+++++ ++.+++|+.++|+||||+|||||+++|+|.++++.|.+.+++
T Consensus 37 ~~~l~i~nls~~~---~~vL~~v-----------s~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g---- 98 (282)
T cd03291 37 DNNLFFSNLCLVG---APVLKNI-----------NLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG---- 98 (282)
T ss_pred CCeEEEEEEEEec---ccceeee-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC----
Confidence 3446788887742 3477888 888888888999999999999999999999999999999876
Q ss_pred HHHHHHHhhhcCCCCcee
Q psy1371 194 DDRLNHLLSVAPQNSIIL 211 (244)
Q Consensus 194 ~~~~~~~~~~~~q~~~lf 211 (244)
.+++++|.+.++
T Consensus 99 ------~i~yv~q~~~l~ 110 (282)
T cd03291 99 ------RISFSSQFSWIM 110 (282)
T ss_pred ------EEEEEeCccccc
Confidence 156666665554
No 337
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.94 E-value=2e-10 Score=97.12 Aligned_cols=81 Identities=19% Similarity=0.244 Sum_probs=60.8
Q ss_pred CCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhccc--CCCeEEEEeCCCCCCH-
Q psy1371 118 PLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGEL--EFGICVLNLSERGLTD- 194 (244)
Q Consensus 118 ~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~--~~~~g~i~~~~~~~~~- 194 (244)
.++++.+.|+.+ .+++++ ++.+.+++.++|+||||||||||+++|+|.. .++.|.+.+++.....
T Consensus 3 ~~~nl~~~~~~~-~~l~~i-----------sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~ 70 (248)
T PRK09580 3 SIKDLHVSVEDK-AILRGL-----------NLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLEL 70 (248)
T ss_pred EEEEEEEEeCCe-eeeecc-----------eeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccC
Confidence 356677666542 467888 7788888889999999999999999999995 6889999998865432
Q ss_pred --HH-HHHHhhhcCCCCce
Q psy1371 195 --DR-LNHLLSVAPQNSII 210 (244)
Q Consensus 195 --~~-~~~~~~~~~q~~~l 210 (244)
.. .++.+++++|++.+
T Consensus 71 ~~~~~~~~~i~~~~q~~~~ 89 (248)
T PRK09580 71 SPEDRAGEGIFMAFQYPVE 89 (248)
T ss_pred CHHHHhhcceEEEecCchh
Confidence 22 23457788877543
No 338
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.94 E-value=1.7e-09 Score=91.70 Aligned_cols=61 Identities=23% Similarity=0.337 Sum_probs=49.7
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC---CHHHHHHHhhhcCCCCc
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL---TDDRLNHLLSVAPQNSI 209 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~---~~~~~~~~~~~~~q~~~ 209 (244)
++.++.++.++|.||||+|||||+++|+|.++ +.|.+.+++... +...+++.+++++|...
T Consensus 16 sl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~ 79 (248)
T PRK03695 16 SAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLSQQQT 79 (248)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEecccCc
Confidence 77788888899999999999999999999985 589999988544 23445666889998653
No 339
>PLN03211 ABC transporter G-25; Provisional
Probab=98.93 E-value=5.1e-10 Score=107.09 Aligned_cols=94 Identities=18% Similarity=0.182 Sum_probs=64.8
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCC--eEEEEeCCCCCCHHHHHHHhhhcCCCCcee-----hhhHhhhhc
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFG--ICVLNLSERGLTDDRLNHLLSVAPQNSIIL-----LEDIDAAFV 220 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~--~g~i~~~~~~~~~~~~~~~~~~~~q~~~lf-----~deid~~~~ 220 (244)
++.+++|+-++|+||||+|||||+++|+|...++ .|.+.++|..... ..++.+++++|+..++ .|++...+.
T Consensus 88 s~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~ 166 (659)
T PLN03211 88 TGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK-QILKRTGFVTQDDILYPHLTVRETLVFCSL 166 (659)
T ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch-hhccceEEECcccccCCcCCHHHHHHHHHH
Confidence 6677777889999999999999999999998875 8999999966543 3445689999986665 333332222
Q ss_pred ccC---cCcccHHHHHHHHHHhhhc
Q psy1371 221 TRE---ESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 221 ~r~---~~~~~~~~~~~~~l~~~~~ 242 (244)
.+. ...++.++..+.+++++++
T Consensus 167 ~~~~~~~~~~~~~~~v~~~l~~lgL 191 (659)
T PLN03211 167 LRLPKSLTKQEKILVAESVISELGL 191 (659)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHcCC
Confidence 221 1122233455667777665
No 340
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.93 E-value=1.5e-10 Score=98.31 Aligned_cols=74 Identities=23% Similarity=0.371 Sum_probs=58.9
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHH
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDR 196 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~ 196 (244)
+.++++.+.|+. ..+++++ ++.+++++.++|+||||+|||||+++|+|++.++.|.+.+++.
T Consensus 5 l~~~~l~~~~~~-~~vl~~v-----------s~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~------ 66 (251)
T PRK09544 5 VSLENVSVSFGQ-RRVLSDV-----------SLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK------ 66 (251)
T ss_pred EEEeceEEEECC-ceEEEeE-----------EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc------
Confidence 446677776653 3467777 8888888889999999999999999999999999999998751
Q ss_pred HHHHhhhcCCCCce
Q psy1371 197 LNHLLSVAPQNSII 210 (244)
Q Consensus 197 ~~~~~~~~~q~~~l 210 (244)
..+++++|+..+
T Consensus 67 --~~i~~v~q~~~~ 78 (251)
T PRK09544 67 --LRIGYVPQKLYL 78 (251)
T ss_pred --cCEEEecccccc
Confidence 247777876544
No 341
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.93 E-value=3e-10 Score=118.58 Aligned_cols=95 Identities=15% Similarity=0.142 Sum_probs=69.1
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC--HHHHHHHhhhcCCCCcee-----hhhHhhhhc
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT--DDRLNHLLSVAPQNSIIL-----LEDIDAAFV 220 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~--~~~~~~~~~~~~q~~~lf-----~deid~~~~ 220 (244)
+++++.|+-++|.||||+|||||+|+|+|+..++.|.+.++|.+.. ....++.+++++|...++ .|++...+.
T Consensus 1959 Sf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~ 2038 (2272)
T TIGR01257 1959 CVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYAR 2038 (2272)
T ss_pred EEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHH
Confidence 5677777779999999999999999999999999999999986553 234567799999975554 344444343
Q ss_pred ccCcCcccHHHHHHHHHHhhhc
Q psy1371 221 TREESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 221 ~r~~~~~~~~~~~~~~l~~~~~ 242 (244)
.++...+..++..+.+++++++
T Consensus 2039 l~g~~~~~~~~~v~~lLe~lgL 2060 (2272)
T TIGR01257 2039 LRGVPAEEIEKVANWSIQSLGL 2060 (2272)
T ss_pred hcCCCHHHHHHHHHHHHHHcCC
Confidence 3443333344555667777765
No 342
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=98.93 E-value=4.5e-10 Score=107.50 Aligned_cols=84 Identities=17% Similarity=0.141 Sum_probs=65.5
Q ss_pred CCCCccccChhH---HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC
Q psy1371 117 RPLNSVVLDSGV---ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT 193 (244)
Q Consensus 117 ~~~~~v~~~~~~---~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~ 193 (244)
+.++++.+.|+. ...+++++ ++.+.+++.++|+||||||||||+++|+|+++++.|.+.+++.+..
T Consensus 5 l~~~nl~~~y~~~~~~~~il~~v-----------s~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~ 73 (648)
T PRK10535 5 LELKDIRRSYPSGEEQVEVLKGI-----------SLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVA 73 (648)
T ss_pred EEEeeEEEEeCCCCCCeeeeeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcC
Confidence 446677766632 12467888 8888888899999999999999999999999999999999985443
Q ss_pred ---HHHH----HHHhhhcCCCCcee
Q psy1371 194 ---DDRL----NHLLSVAPQNSIIL 211 (244)
Q Consensus 194 ---~~~~----~~~~~~~~q~~~lf 211 (244)
.+.+ ++.+++++|++.+|
T Consensus 74 ~~~~~~~~~~~~~~i~~v~q~~~l~ 98 (648)
T PRK10535 74 TLDADALAQLRREHFGFIFQRYHLL 98 (648)
T ss_pred cCCHHHHHHHHhccEEEEeCCcccC
Confidence 2222 35688999987666
No 343
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.92 E-value=4.7e-10 Score=104.07 Aligned_cols=80 Identities=20% Similarity=0.172 Sum_probs=63.5
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC---C
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL---T 193 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~---~ 193 (244)
++++++.+.|+.. .+++++ ++.++.|+.++|+||||||||||+|+|+|++.++.|.+.+++... +
T Consensus 4 l~~~~l~~~~~~~-~il~~v-----------sl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~ 71 (490)
T PRK10938 4 LQISQGTFRLSDT-KTLQLP-----------SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLS 71 (490)
T ss_pred EEEEeEEEEcCCe-eecccc-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCC
Confidence 3467788777543 478888 888888888999999999999999999999999999998876433 2
Q ss_pred HHHHHHHhhhcCCCC
Q psy1371 194 DDRLNHLLSVAPQNS 208 (244)
Q Consensus 194 ~~~~~~~~~~~~q~~ 208 (244)
....++.+++++|+.
T Consensus 72 ~~~~~~~i~~~~q~~ 86 (490)
T PRK10938 72 FEQLQKLVSDEWQRN 86 (490)
T ss_pred HHHHHHHhceeccCc
Confidence 334556688888864
No 344
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.92 E-value=2.2e-09 Score=91.42 Aligned_cols=54 Identities=26% Similarity=0.260 Sum_probs=42.8
Q ss_pred ccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEE
Q psy1371 121 SVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLN 186 (244)
Q Consensus 121 ~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~ 186 (244)
++.+.|+.+..+++++ +. +.+++.++|+||||+|||||+++|+|++.++.|.+.
T Consensus 5 ~~~~~y~~~~~~l~~i-----------~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~ 58 (255)
T cd03236 5 EPVHRYGPNSFKLHRL-----------PV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFD 58 (255)
T ss_pred CcceeecCcchhhhcC-----------CC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEe
Confidence 4555554333466777 53 667777899999999999999999999999999995
No 345
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.91 E-value=3.9e-10 Score=117.78 Aligned_cols=116 Identities=15% Similarity=0.111 Sum_probs=80.3
Q ss_pred CCCCccccChh-HHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC--
Q psy1371 117 RPLNSVVLDSG-VADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT-- 193 (244)
Q Consensus 117 ~~~~~v~~~~~-~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~-- 193 (244)
+.++++...|+ ....+++++ ++.+..++-++|.||||+|||||+++|+|+..|+.|.+.++|.+..
T Consensus 929 L~I~nLsK~y~~~~k~aL~~l-----------sl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~ 997 (2272)
T TIGR01257 929 VCVKNLVKIFEPSGRPAVDRL-----------NITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETN 997 (2272)
T ss_pred EEEEeEEEEecCCCceEEEee-----------EEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcch
Confidence 45666666663 123456677 7777777779999999999999999999999999999999986553
Q ss_pred HHHHHHHhhhcCCCCcee-----hhhHhhhhcccCcCcccHHHHHHHHHHhhhcC
Q psy1371 194 DDRLNHLLSVAPQNSIIL-----LEDIDAAFVTREESSQGLEDIDAAFVTREESS 243 (244)
Q Consensus 194 ~~~~~~~~~~~~q~~~lf-----~deid~~~~~r~~~~~~~~~~~~~~l~~~~~~ 243 (244)
...+|+.+++++|...++ .|++...+..++...+..++....+++++++.
T Consensus 998 ~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~ 1052 (2272)
T TIGR01257 998 LDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLH 1052 (2272)
T ss_pred HHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc
Confidence 234667789999987665 34444333333322233344456677777653
No 346
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.91 E-value=7.3e-10 Score=93.58 Aligned_cols=64 Identities=25% Similarity=0.350 Sum_probs=52.2
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCC-------CCCHHHHHHHhhhcCCCCcee
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSER-------GLTDDRLNHLLSVAPQNSIIL 211 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~-------~~~~~~~~~~~~~~~q~~~lf 211 (244)
++..|...-.++.|+||+||||++++|+|+..|+.|.|.+++. ++.-..-++.++||+|+.-+|
T Consensus 18 ~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLF 88 (352)
T COG4148 18 NFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLF 88 (352)
T ss_pred eccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccc
Confidence 4555554558999999999999999999999999999999982 222234578899999998777
No 347
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.91 E-value=4.3e-10 Score=104.54 Aligned_cols=81 Identities=20% Similarity=0.167 Sum_probs=61.3
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC--CeEEEEeCCCCCC---
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF--GICVLNLSERGLT--- 193 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~--~~g~i~~~~~~~~--- 193 (244)
++++.+.|+. ..+++++ ++.++.|+-++|+||||||||||+++|+|++.+ +.|.+.+++....
T Consensus 4 i~~l~~~~~~-~~il~~i-----------sl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~ 71 (500)
T TIGR02633 4 MKGIVKTFGG-VKALDGI-----------DLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASN 71 (500)
T ss_pred EEeEEEEeCC-eEeecce-----------EEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCC
Confidence 4566666643 3467888 788888888999999999999999999999986 6899999885442
Q ss_pred HH-HHHHHhhhcCCCCcee
Q psy1371 194 DD-RLNHLLSVAPQNSIIL 211 (244)
Q Consensus 194 ~~-~~~~~~~~~~q~~~lf 211 (244)
.. ..++.+++++|+..++
T Consensus 72 ~~~~~~~~i~~v~q~~~~~ 90 (500)
T TIGR02633 72 IRDTERAGIVIIHQELTLV 90 (500)
T ss_pred HHHHHhCCEEEEeeccccC
Confidence 22 2345588999876544
No 348
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.89 E-value=8.7e-10 Score=103.02 Aligned_cols=58 Identities=19% Similarity=0.167 Sum_probs=47.7
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhccc--CCCeEEEEeC
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGEL--EFGICVLNLS 188 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~--~~~~g~i~~~ 188 (244)
++++++.|+. ..+++++ ++.+..++.++|+||||||||||+++|+|+. .++.|.+.++
T Consensus 3 ~~~l~~~~~~-~~~l~~i-----------s~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~ 62 (520)
T TIGR03269 3 VKNLTKKFDG-KEVLKNI-----------SFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYH 62 (520)
T ss_pred EEEEEEEECC-eEeeece-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEe
Confidence 4566666643 3477888 7888888889999999999999999999996 6889998875
No 349
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.88 E-value=1.8e-09 Score=99.36 Aligned_cols=96 Identities=18% Similarity=0.101 Sum_probs=67.5
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCC--CC---HHHHHHHhhhcCCCCcee-------hhhH
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERG--LT---DDRLNHLLSVAPQNSIIL-------LEDI 215 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~--~~---~~~~~~~~~~~~q~~~lf-------~dei 215 (244)
++.+..|+.++|+|+|||||||++|+|+|+..|+.|.+.+++.+ .+ ....++.+.+++|++.-- .+.+
T Consensus 311 Sf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i 390 (539)
T COG1123 311 SFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDIL 390 (539)
T ss_pred eeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHH
Confidence 67778888899999999999999999999999999999998854 22 234667788888864332 3444
Q ss_pred hhhhc-ccCcCcccHHHHHHHHHHhhhcC
Q psy1371 216 DAAFV-TREESSQGLEDIDAAFVTREESS 243 (244)
Q Consensus 216 d~~~~-~r~~~~~~~~~~~~~~l~~~~~~ 243 (244)
..... .........++....++++++++
T Consensus 391 ~epL~~~~~~~~~~~~~rv~~ll~~VgL~ 419 (539)
T COG1123 391 AEPLRIHGGGSGAERRARVAELLELVGLP 419 (539)
T ss_pred HhHHhhhcccchHHHHHHHHHHHHHcCCC
Confidence 33222 22222334445677778887764
No 350
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.88 E-value=3.1e-09 Score=88.77 Aligned_cols=62 Identities=23% Similarity=0.214 Sum_probs=48.9
Q ss_pred CCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCC
Q psy1371 118 PLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERG 191 (244)
Q Consensus 118 ~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~ 191 (244)
..+++...|+. ..+++++ ++.+++++.++|.||||+|||||+++|+|++.++.|.+.+++..
T Consensus 24 ~~~~~~~~~~~-~~il~~v-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~ 85 (224)
T cd03220 24 GILGRKGEVGE-FWALKDV-----------SFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRV 85 (224)
T ss_pred hhhhhhhhcCC-eEEEeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE
Confidence 34455555543 2355666 67777888899999999999999999999999999999998743
No 351
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.86 E-value=5.1e-10 Score=106.67 Aligned_cols=61 Identities=18% Similarity=0.090 Sum_probs=50.1
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC---CHH---HHHHHhhhcCCCC
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL---TDD---RLNHLLSVAPQNS 208 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~---~~~---~~~~~~~~~~q~~ 208 (244)
++.+..|+.++|+||||||||||+++|+|++.++.|.|.+++..+ +.. .+++.+++++|++
T Consensus 344 s~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~ 410 (623)
T PRK10261 344 SFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDP 410 (623)
T ss_pred EeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCc
Confidence 677777777999999999999999999999999999999988543 222 2345688999875
No 352
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.86 E-value=6.2e-10 Score=87.72 Aligned_cols=43 Identities=26% Similarity=0.325 Sum_probs=39.7
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCC
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSER 190 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~ 190 (244)
++.+++++.++|.||||+|||||+++|+|.+.++.|.+.+++.
T Consensus 19 ~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~ 61 (157)
T cd00267 19 SLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGK 61 (157)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCE
Confidence 7778888889999999999999999999999999999998874
No 353
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.85 E-value=1.2e-09 Score=102.00 Aligned_cols=64 Identities=19% Similarity=0.261 Sum_probs=49.7
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeC-CC---CCCH------HHHHHHhhhcCCCCcee
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLS-ER---GLTD------DRLNHLLSVAPQNSIIL 211 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~-~~---~~~~------~~~~~~~~~~~q~~~lf 211 (244)
++.++.++.++|+||||||||||+++|+|++.++.|.+.++ +. ..+. ...++.+++++|+..++
T Consensus 304 s~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~ 377 (520)
T TIGR03269 304 SLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLY 377 (520)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccC
Confidence 66777777799999999999999999999999999999985 42 1111 13455689999875444
No 354
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.85 E-value=1.3e-09 Score=102.14 Aligned_cols=80 Identities=16% Similarity=0.161 Sum_probs=60.3
Q ss_pred CCCCccccChhH----------HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEE
Q psy1371 117 RPLNSVVLDSGV----------ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLN 186 (244)
Q Consensus 117 ~~~~~v~~~~~~----------~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~ 186 (244)
+.++++.+.|+. ...+++++ ++.++.++-++|+||||||||||+++|+|+++ +.|.|.
T Consensus 276 l~~~~l~~~~~~~~~~~~~~~~~~~il~~i-----------sl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~ 343 (529)
T PRK15134 276 LDVEQLQVAFPIRKGILKRTVDHNVVVKNI-----------SFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIW 343 (529)
T ss_pred ccccCcEEEeecCccccccccccceeeecc-----------eeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEE
Confidence 566777776631 12466777 77777788899999999999999999999985 899999
Q ss_pred eCCCCCC---HH---HHHHHhhhcCCCC
Q psy1371 187 LSERGLT---DD---RLNHLLSVAPQNS 208 (244)
Q Consensus 187 ~~~~~~~---~~---~~~~~~~~~~q~~ 208 (244)
+++.+.. .. .+++.+++++|+.
T Consensus 344 ~~g~~i~~~~~~~~~~~~~~i~~v~q~~ 371 (529)
T PRK15134 344 FDGQPLHNLNRRQLLPVRHRIQVVFQDP 371 (529)
T ss_pred ECCEEccccchhhHHHhhhceEEEEeCc
Confidence 9885432 22 2355688999875
No 355
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.84 E-value=6.2e-09 Score=82.87 Aligned_cols=107 Identities=14% Similarity=0.183 Sum_probs=72.0
Q ss_pred HHHHhcChhhhhhCCCCCCcc--eEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC-------------CH---HHH
Q psy1371 136 IKQFVADPAWYLDRGIPYRRG--YLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL-------------TD---DRL 197 (244)
Q Consensus 136 i~~~~~~~~~~~~~~~~~~~g--i~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~-------------~~---~~~ 197 (244)
+.+.++..+.++..++..++| +.|+|.+|+||||++|||.-+-.|+.|.|.+++..+ +. .++
T Consensus 12 lHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~ 91 (256)
T COG4598 12 LHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRL 91 (256)
T ss_pred HHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHH
Confidence 333344444444444444444 899999999999999999999999999999887221 11 357
Q ss_pred HHHhhhcCCCCcee-----hhhH-hhhhcccCcCcccHHHHHHHHHHhhhc
Q psy1371 198 NHLLSVAPQNSIIL-----LEDI-DAAFVTREESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 198 ~~~~~~~~q~~~lf-----~dei-d~~~~~r~~~~~~~~~~~~~~l~~~~~ 242 (244)
|..+++++|.--|+ ++++ +.....-+.+..+.-+..+.+|+++++
T Consensus 92 Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi 142 (256)
T COG4598 92 RTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGI 142 (256)
T ss_pred HHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCc
Confidence 88899999975554 5665 444333344445555667777877765
No 356
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.84 E-value=9.1e-10 Score=113.04 Aligned_cols=113 Identities=16% Similarity=0.155 Sum_probs=76.1
Q ss_pred CCCccccChh---HHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC---CCeEEEEeCCCC
Q psy1371 118 PLNSVVLDSG---VADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE---FGICVLNLSERG 191 (244)
Q Consensus 118 ~~~~v~~~~~---~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~---~~~g~i~~~~~~ 191 (244)
.++|+.+.+. ..+.+++++ ++.+++++-++|.||||+|||||+++|+|... ++.|.+.++|.+
T Consensus 761 ~~~nl~~~~~~~~~~~~iL~~v-----------s~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~ 829 (1394)
T TIGR00956 761 HWRNLTYEVKIKKEKRVILNNV-----------DGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRP 829 (1394)
T ss_pred EEEeeEEEecCCCCCcEeeeCC-----------EEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEE
Confidence 4566655542 123466777 67777778899999999999999999999987 567999999976
Q ss_pred CCHHHHHHHhhhcCCCCcee-----hhhHhhhhcccC---cCcccHHHHHHHHHHhhhc
Q psy1371 192 LTDDRLNHLLSVAPQNSIIL-----LEDIDAAFVTRE---ESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 192 ~~~~~~~~~~~~~~q~~~lf-----~deid~~~~~r~---~~~~~~~~~~~~~l~~~~~ 242 (244)
... .+++.+++++|+..++ .|+++..+..|. .+.+...+..+.+++++++
T Consensus 830 ~~~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L 887 (1394)
T TIGR00956 830 LDS-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEM 887 (1394)
T ss_pred CCh-hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC
Confidence 643 5678899999875433 344443333231 1222333455666776654
No 357
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.84 E-value=8.5e-09 Score=87.29 Aligned_cols=99 Identities=18% Similarity=0.307 Sum_probs=65.4
Q ss_pred CCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC
Q psy1371 113 PKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL 192 (244)
Q Consensus 113 ~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~ 192 (244)
..+|..|++...+...++ ++..++...+.- -..-..++|+||||.|||||++.+|.+++...-..+.. .-.
T Consensus 19 ~lRP~~l~efiGQ~~vk~----~L~ifI~AAk~r----~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp-~le 89 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKE----QLQIFIKAAKKR----GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGP-ALE 89 (332)
T ss_pred ccCcccHHHhcChHHHHH----HHHHHHHHHHhc----CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccc-ccc
Confidence 345667777766555444 444444322211 11223589999999999999999999998754333222 222
Q ss_pred CHHHHHHHhhhcCCCCceehhhHhhhhc
Q psy1371 193 TDDRLNHLLSVAPQNSIILLEDIDAAFV 220 (244)
Q Consensus 193 ~~~~~~~~~~~~~q~~~lf~deid~~~~ 220 (244)
....+...+.......++|+|||..+..
T Consensus 90 K~gDlaaiLt~Le~~DVLFIDEIHrl~~ 117 (332)
T COG2255 90 KPGDLAAILTNLEEGDVLFIDEIHRLSP 117 (332)
T ss_pred ChhhHHHHHhcCCcCCeEEEehhhhcCh
Confidence 3456777888888899999999988754
No 358
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.83 E-value=7.7e-10 Score=93.80 Aligned_cols=83 Identities=19% Similarity=0.244 Sum_probs=62.2
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcc--cCCCeEEEEeCCCCCCH
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGE--LEFGICVLNLSERGLTD 194 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~--~~~~~g~i~~~~~~~~~ 194 (244)
+.++++.+.++. ..+++++ ++.+.+++.++|+||||||||||+++|+|. +.++.|.+.+++.....
T Consensus 8 l~~~~l~~~~~~-~~~l~~v-----------s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~ 75 (252)
T CHL00131 8 LEIKNLHASVNE-NEILKGL-----------NLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILD 75 (252)
T ss_pred EEEEeEEEEeCC-EEeeecc-----------eeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEccc
Confidence 567888877753 2477888 888888888999999999999999999998 57889999998854322
Q ss_pred ---HHHHH-HhhhcCCCCcee
Q psy1371 195 ---DRLNH-LLSVAPQNSIIL 211 (244)
Q Consensus 195 ---~~~~~-~~~~~~q~~~lf 211 (244)
...++ .+.+++|++.++
T Consensus 76 ~~~~~~~~~~~~~~~q~~~~~ 96 (252)
T CHL00131 76 LEPEERAHLGIFLAFQYPIEI 96 (252)
T ss_pred CChhhhheeeEEEEecccccc
Confidence 22222 355677765544
No 359
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.83 E-value=1.5e-09 Score=101.72 Aligned_cols=81 Identities=14% Similarity=0.164 Sum_probs=61.8
Q ss_pred CCCCccccChhH---HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC-----CeEEEEeC
Q psy1371 117 RPLNSVVLDSGV---ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF-----GICVLNLS 188 (244)
Q Consensus 117 ~~~~~v~~~~~~---~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~-----~~g~i~~~ 188 (244)
++++++.+.|+. ...+++++ ++.+..|+.++|+||||||||||+++|+|.+++ +.|.+.++
T Consensus 6 l~~~~l~~~~~~~~~~~~~l~~i-----------sl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~ 74 (529)
T PRK15134 6 LAIENLSVAFRQQQTVRTVVNDV-----------SLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFH 74 (529)
T ss_pred EEEeceEEEecCCCCceeeeece-----------EEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEEC
Confidence 456777777642 13577888 888888888999999999999999999999986 68999998
Q ss_pred CCCCC---HHH---HH-HHhhhcCCCC
Q psy1371 189 ERGLT---DDR---LN-HLLSVAPQNS 208 (244)
Q Consensus 189 ~~~~~---~~~---~~-~~~~~~~q~~ 208 (244)
+.... ... .+ +.+++++|++
T Consensus 75 g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 75 GESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred CEecccCCHHHHHHHhcCceEEEecCc
Confidence 85442 222 22 3588999875
No 360
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.82 E-value=2.2e-09 Score=98.05 Aligned_cols=114 Identities=17% Similarity=0.217 Sum_probs=82.8
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT--- 193 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~--- 193 (244)
.++++++-.++.- ++++++ ++.+.+++-++|+|.||+|||||+|.|+|.+.|+.|.|.++|....
T Consensus 9 l~~~~i~K~FggV-~AL~~v-----------~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~s 76 (500)
T COG1129 9 LELRGISKSFGGV-KALDGV-----------SLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSS 76 (500)
T ss_pred eeeecceEEcCCc-eeeccc-----------eeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCC
Confidence 4466777666653 567888 7777777778999999999999999999999999999999995432
Q ss_pred H-HHHHHHhhhcCCCCcee--hhhHhhhhcccCcCc-------ccHHHHHHHHHHhhhc
Q psy1371 194 D-DRLNHLLSVAPQNSIIL--LEDIDAAFVTREESS-------QGLEDIDAAFVTREES 242 (244)
Q Consensus 194 ~-~~~~~~~~~~~q~~~lf--~deid~~~~~r~~~~-------~~~~~~~~~~l~~~~~ 242 (244)
. +..+.-+..+.|+.-++ +.-.+|+...|.... ....+...++|.+++.
T Consensus 77 p~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~ 135 (500)
T COG1129 77 PRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGL 135 (500)
T ss_pred HHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCC
Confidence 2 33444577788876665 555688876665433 3345666677776654
No 361
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.82 E-value=1.1e-09 Score=102.15 Aligned_cols=60 Identities=12% Similarity=0.144 Sum_probs=49.5
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---H-HHHHHHhhhcCCC
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT---D-DRLNHLLSVAPQN 207 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~---~-~~~~~~~~~~~q~ 207 (244)
++.++.++.++|+||||||||||+++|+|++.|+.|.+.+++...+ . ..+++.+++++|+
T Consensus 283 sl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~ 346 (510)
T PRK09700 283 SFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITES 346 (510)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCc
Confidence 6677777779999999999999999999999999999999885432 1 2345568899986
No 362
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.3e-09 Score=89.75 Aligned_cols=80 Identities=16% Similarity=0.253 Sum_probs=59.0
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcc--cCCCeEEEEeCCCCCCH--
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGE--LEFGICVLNLSERGLTD-- 194 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~--~~~~~g~i~~~~~~~~~-- 194 (244)
++|+...-+.++++++.+ ++.++.+...+|.||||+|||||+++|+|. |..+.|.|.+++.++.+
T Consensus 6 I~dLhv~v~~~keILkgv-----------nL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~ 74 (251)
T COG0396 6 IKDLHVEVEGKKEILKGV-----------NLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELS 74 (251)
T ss_pred EeeeEEEecCchhhhcCc-----------ceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCC
Confidence 345555544435688999 677777777799999999999999999996 46788999999966643
Q ss_pred --HHHHHHhhhcCCCCc
Q psy1371 195 --DRLNHLLSVAPQNSI 209 (244)
Q Consensus 195 --~~~~~~~~~~~q~~~ 209 (244)
.+.|.-+-.++|.+.
T Consensus 75 ~~ERAr~GifLafQ~P~ 91 (251)
T COG0396 75 PDERARAGIFLAFQYPV 91 (251)
T ss_pred HhHHHhcCCEEeecCCc
Confidence 344555666777543
No 363
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.82 E-value=6.6e-10 Score=98.09 Aligned_cols=81 Identities=15% Similarity=0.158 Sum_probs=59.4
Q ss_pred CCCccccChhH---HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC----CCeEEEEeCCC
Q psy1371 118 PLNSVVLDSGV---ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE----FGICVLNLSER 190 (244)
Q Consensus 118 ~~~~v~~~~~~---~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~----~~~g~i~~~~~ 190 (244)
.++++.+.|.. ...+++++ ++.+..|+.++|+||||||||||+++|+|+.. ++.|.+.+++.
T Consensus 5 ~v~~l~~~y~~~~~~~~~l~~v-----------sl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~ 73 (330)
T PRK15093 5 DIRNLTIEFKTSDGWVKAVDRV-----------SMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDI 73 (330)
T ss_pred EEeeeEEEEeCCCCCEEEEeee-----------EEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCE
Confidence 34555555521 12367777 78888888899999999999999999999986 47899999885
Q ss_pred CC---CHHHHH----HHhhhcCCCCc
Q psy1371 191 GL---TDDRLN----HLLSVAPQNSI 209 (244)
Q Consensus 191 ~~---~~~~~~----~~~~~~~q~~~ 209 (244)
+. +...++ +.+++++|++.
T Consensus 74 ~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 74 DLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 43 333332 35889998764
No 364
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.81 E-value=1.1e-08 Score=86.30 Aligned_cols=43 Identities=23% Similarity=0.234 Sum_probs=41.1
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCC
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSER 190 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~ 190 (244)
++.+|+|..++++||||+||||++|+|.|.+.|+.|.+.++|.
T Consensus 44 sf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~ 86 (325)
T COG4586 44 SFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGK 86 (325)
T ss_pred eeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCc
Confidence 7889999999999999999999999999999999999999994
No 365
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.81 E-value=3.3e-09 Score=93.58 Aligned_cols=96 Identities=20% Similarity=0.344 Sum_probs=64.1
Q ss_pred CCCCCCCCCCccccChhHH---HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEe
Q psy1371 111 GHPKRRRPLNSVVLDSGVA---DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNL 187 (244)
Q Consensus 111 ~~~~~~~~~~~v~~~~~~~---~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~ 187 (244)
....+|.++++++.+.... ..+.+.+ ..+.+ ....|+|||||||||++++|++..+..+..++.
T Consensus 15 A~rmRP~~lde~vGQ~HLlg~~~~lrr~v----~~~~l---------~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sA 81 (436)
T COG2256 15 AERLRPKSLDEVVGQEHLLGEGKPLRRAV----EAGHL---------HSMILWGPPGTGKTTLARLIAGTTNAAFEALSA 81 (436)
T ss_pred HHHhCCCCHHHhcChHhhhCCCchHHHHH----hcCCC---------ceeEEECCCCCCHHHHHHHHHHhhCCceEEecc
Confidence 3445678899988775422 2232222 22221 136899999999999999999999887666654
Q ss_pred CCCCCCHHHHHHHhhhcC------CCCceehhhHhhhhcc
Q psy1371 188 SERGLTDDRLNHLLSVAP------QNSIILLEDIDAAFVT 221 (244)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~------q~~~lf~deid~~~~~ 221 (244)
-. -+.+.+|+.+..+. +..+||+|||..+-..
T Consensus 82 v~--~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~ 119 (436)
T COG2256 82 VT--SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA 119 (436)
T ss_pred cc--ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh
Confidence 33 23456777666653 3589999999877543
No 366
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.81 E-value=8.3e-09 Score=83.12 Aligned_cols=68 Identities=18% Similarity=0.183 Sum_probs=49.4
Q ss_pred CCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCC---------CCHHHHHH---HhhhcCCCCceehhhHh
Q psy1371 149 RGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERG---------LTDDRLNH---LLSVAPQNSIILLEDID 216 (244)
Q Consensus 149 ~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~---------~~~~~~~~---~~~~~~q~~~lf~deid 216 (244)
+.+++++.++|+||||+|||||+++|+|++.++.|.+.+++.. .+....++ ....+.++.++++||--
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPt 99 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPS 99 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 3556677789999999999999999999999999999987621 22211111 12334567888888863
No 367
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.80 E-value=1.8e-09 Score=102.98 Aligned_cols=63 Identities=14% Similarity=0.095 Sum_probs=52.4
Q ss_pred CCCCCccccChhH---HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC
Q psy1371 116 RRPLNSVVLDSGV---ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE 189 (244)
Q Consensus 116 ~~~~~~v~~~~~~---~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~ 189 (244)
-++++++.+.|+. ...+++++ ++.++.|+.++|+||||||||||+++|+|++.++.|.+.+++
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~i-----------s~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g 77 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNL-----------SFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDK 77 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEee-----------EEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECC
Confidence 3567888777642 12477888 888888888999999999999999999999999999998766
No 368
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.80 E-value=1.4e-09 Score=101.41 Aligned_cols=81 Identities=9% Similarity=0.118 Sum_probs=59.5
Q ss_pred CCCCccccChh--HHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC-CCeEEEEeCCCCCC
Q psy1371 117 RPLNSVVLDSG--VADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE-FGICVLNLSERGLT 193 (244)
Q Consensus 117 ~~~~~v~~~~~--~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~-~~~g~i~~~~~~~~ 193 (244)
+.++++.+.|+ ....+++++ ++.++.|+.++|+||||||||||+++|+|++. ++.|.+.+++.+.+
T Consensus 260 l~~~~l~~~~~~~~~~~vl~~v-----------sl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~ 328 (506)
T PRK13549 260 LEVRNLTAWDPVNPHIKRVDDV-----------SFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVK 328 (506)
T ss_pred EEEecCccccccccccccccce-----------eeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECC
Confidence 44566666552 112356666 67777788899999999999999999999998 48999999885432
Q ss_pred ---H-HHHHHHhhhcCCCC
Q psy1371 194 ---D-DRLNHLLSVAPQNS 208 (244)
Q Consensus 194 ---~-~~~~~~~~~~~q~~ 208 (244)
. +..++.+++++|+.
T Consensus 329 ~~~~~~~~~~~i~~v~q~~ 347 (506)
T PRK13549 329 IRNPQQAIAQGIAMVPEDR 347 (506)
T ss_pred CCCHHHHHHCCCEEeCcch
Confidence 1 23445588899874
No 369
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.80 E-value=1.6e-08 Score=89.11 Aligned_cols=99 Identities=19% Similarity=0.302 Sum_probs=65.4
Q ss_pred CCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCC
Q psy1371 112 HPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERG 191 (244)
Q Consensus 112 ~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~ 191 (244)
...+|..|+++......++.+...+...... -.+...++|+||||+|||+++++++..++.+.........
T Consensus 17 ~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~- 87 (328)
T PRK00080 17 RSLRPKSLDEFIGQEKVKENLKIFIEAAKKR--------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPAL- 87 (328)
T ss_pred hhcCcCCHHHhcCcHHHHHHHHHHHHHHHhc--------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccc-
Confidence 3456678999888776655543333221111 1234568999999999999999999998876544433221
Q ss_pred CCHHHHHHHhhhcCCCCceehhhHhhhh
Q psy1371 192 LTDDRLNHLLSVAPQNSIILLEDIDAAF 219 (244)
Q Consensus 192 ~~~~~~~~~~~~~~q~~~lf~deid~~~ 219 (244)
.....+...+....+..++|+||+|.+.
T Consensus 88 ~~~~~l~~~l~~l~~~~vl~IDEi~~l~ 115 (328)
T PRK00080 88 EKPGDLAAILTNLEEGDVLFIDEIHRLS 115 (328)
T ss_pred cChHHHHHHHHhcccCCEEEEecHhhcc
Confidence 1223455555556677899999999875
No 370
>KOG0060|consensus
Probab=98.80 E-value=4.8e-09 Score=96.15 Aligned_cols=90 Identities=23% Similarity=0.378 Sum_probs=70.3
Q ss_pred CCCCCCccccChhH-HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC
Q psy1371 115 RRRPLNSVVLDSGV-ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT 193 (244)
Q Consensus 115 ~~~~~~~v~~~~~~-~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~ 193 (244)
..+.+++|.+..+. ...+++++ ++.++.++.++|.||||||||+|+|+++++.+...|.+.....+..
T Consensus 432 n~i~~e~v~l~tPt~g~~lie~L-----------s~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~ 500 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTNGDLLIENL-----------SLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP 500 (659)
T ss_pred ceEEeeeeeecCCCCCceeeeee-----------eeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC
Confidence 45788999988655 55677778 8899999999999999999999999999999989999887654432
Q ss_pred HHHHHHHhhhcCCCCceehhhH-hhhhc
Q psy1371 194 DDRLNHLLSVAPQNSIILLEDI-DAAFV 220 (244)
Q Consensus 194 ~~~~~~~~~~~~q~~~lf~dei-d~~~~ 220 (244)
+.+=++||.++.-..++ |.+.+
T Consensus 501 -----~~lfflPQrPYmt~GTLRdQvIY 523 (659)
T KOG0060|consen 501 -----KDLFFLPQRPYMTLGTLRDQVIY 523 (659)
T ss_pred -----CceEEecCCCCccccchhheeec
Confidence 22447888877776666 55443
No 371
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.79 E-value=2e-09 Score=99.82 Aligned_cols=80 Identities=20% Similarity=0.222 Sum_probs=57.9
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC-CeEEEEeCCCCC---
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF-GICVLNLSERGL--- 192 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~-~~g~i~~~~~~~--- 192 (244)
++++++.+.|+. ..+++++ ++.++.++.++|+||||||||||+++|+|..++ +.|.+.+++...
T Consensus 261 l~~~~l~~~~~~-~~il~~v-----------sl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~ 328 (490)
T PRK10938 261 IVLNNGVVSYND-RPILHNL-----------SWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSG 328 (490)
T ss_pred EEEeceEEEECC-eeEEeec-----------eEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCC
Confidence 345555555543 2355666 677777788999999999999999999998764 589999987533
Q ss_pred -CHHHHHHHhhhcCCCC
Q psy1371 193 -TDDRLNHLLSVAPQNS 208 (244)
Q Consensus 193 -~~~~~~~~~~~~~q~~ 208 (244)
.....++.+++++|+.
T Consensus 329 ~~~~~~~~~i~~v~q~~ 345 (490)
T PRK10938 329 ETIWDIKKHIGYVSSSL 345 (490)
T ss_pred CCHHHHHhhceEECHHH
Confidence 1223566788888864
No 372
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.79 E-value=1.1e-08 Score=87.79 Aligned_cols=96 Identities=14% Similarity=0.151 Sum_probs=74.9
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC---CHHH----HHHHhhhcCCCCcee-----hhhH
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL---TDDR----LNHLLSVAPQNSIIL-----LEDI 215 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~---~~~~----~~~~~~~~~q~~~lf-----~dei 215 (244)
++.++.++-..|.|-||||||||+|++.++..|+.|++.+++.++ +.+. .|+.+++|+|.--|+ +|++
T Consensus 48 sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv 127 (386)
T COG4175 48 SLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENV 127 (386)
T ss_pred eeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhh
Confidence 445555666899999999999999999999999999999999544 4433 345689999975555 6666
Q ss_pred hhhhcccCcCcccHHHHHHHHHHhhhcC
Q psy1371 216 DAAFVTREESSQGLEDIDAAFVTREESS 243 (244)
Q Consensus 216 d~~~~~r~~~~~~~~~~~~~~l~~~~~~ 243 (244)
..-+.-++-+..+.++.....++.+++.
T Consensus 128 ~fGLev~Gv~~~er~~~a~~~l~~VgL~ 155 (386)
T COG4175 128 AFGLEVQGVPKAEREERALEALELVGLE 155 (386)
T ss_pred hcceeecCCCHHHHHHHHHHHHHHcCch
Confidence 6666667777777888888888888764
No 373
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.79 E-value=3.1e-09 Score=98.61 Aligned_cols=60 Identities=13% Similarity=0.202 Sum_probs=48.5
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---H-HHHHHHhhhcCCC
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT---D-DRLNHLLSVAPQN 207 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~---~-~~~~~~~~~~~q~ 207 (244)
++.++.|+.++|+||||||||||+++|+|+..++.|.+.+++.... . ..+++.+++++|+
T Consensus 268 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~ 331 (491)
T PRK10982 268 SFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEE 331 (491)
T ss_pred eEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCc
Confidence 6667777779999999999999999999999999999999884432 2 2334557788875
No 374
>PRK04195 replication factor C large subunit; Provisional
Probab=98.79 E-value=2.3e-08 Score=92.66 Aligned_cols=101 Identities=29% Similarity=0.509 Sum_probs=69.3
Q ss_pred cCCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC
Q psy1371 110 FGHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE 189 (244)
Q Consensus 110 ~~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~ 189 (244)
|.++++|.+++++.++....+.+.+.+..+.. + .+++.++|+||||+||||+++++++.++.+...++.++
T Consensus 4 W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd 74 (482)
T PRK04195 4 WVEKYRPKTLSDVVGNEKAKEQLREWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASD 74 (482)
T ss_pred chhhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccc
Confidence 45678889999999988776666555543321 1 12567999999999999999999999987766665544
Q ss_pred CCCCHHHHHHHhhhc--------CCCCceehhhHhhhhc
Q psy1371 190 RGLTDDRLNHLLSVA--------PQNSIILLEDIDAAFV 220 (244)
Q Consensus 190 ~~~~~~~~~~~~~~~--------~q~~~lf~deid~~~~ 220 (244)
.. +...+++.+..+ .+..++++||+|.+..
T Consensus 75 ~r-~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~ 112 (482)
T PRK04195 75 QR-TADVIERVAGEAATSGSLFGARRKLILLDEVDGIHG 112 (482)
T ss_pred cc-cHHHHHHHHHHhhccCcccCCCCeEEEEecCccccc
Confidence 21 222333332221 1356889999999864
No 375
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.78 E-value=7.6e-10 Score=104.23 Aligned_cols=76 Identities=20% Similarity=0.101 Sum_probs=60.8
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHH
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDR 196 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~ 196 (244)
++++++.+.|+..+.+++++ ++.++.|+.++|+||||||||||+++|+|.+.++.|.+.++..
T Consensus 7 l~i~~l~~~y~~~~~il~~v-----------s~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~------ 69 (556)
T PRK11819 7 YTMNRVSKVVPPKKQILKDI-----------SLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG------ 69 (556)
T ss_pred EEEeeEEEEeCCCCeeeeCc-----------eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC------
Confidence 45778887775224578888 8888888889999999999999999999999999999987642
Q ss_pred HHHHhhhcCCCCcee
Q psy1371 197 LNHLLSVAPQNSIIL 211 (244)
Q Consensus 197 ~~~~~~~~~q~~~lf 211 (244)
..+++++|.+.++
T Consensus 70 --~~i~~v~Q~~~~~ 82 (556)
T PRK11819 70 --IKVGYLPQEPQLD 82 (556)
T ss_pred --CEEEEEecCCCCC
Confidence 2467888865443
No 376
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=98.78 E-value=4.9e-09 Score=92.35 Aligned_cols=84 Identities=17% Similarity=0.234 Sum_probs=55.8
Q ss_pred EEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH-HHHHHHhhhcCCCCceehh-hH-hhhhcc---cCcCcccHHHH
Q psy1371 159 LYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD-DRLNHLLSVAPQNSIILLE-DI-DAAFVT---REESSQGLEDI 232 (244)
Q Consensus 159 l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~-~~~~~~~~~~~q~~~lf~d-ei-d~~~~~---r~~~~~~~~~~ 232 (244)
|+||||||||||+++|+|++.++.|.+.+++..... ...++.+++++|+..+|.. ++ |++... +.......++.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 579999999999999999999999999998854432 1235568899998766632 44 554422 11122222334
Q ss_pred HHHHHHhhhc
Q psy1371 233 DAAFVTREES 242 (244)
Q Consensus 233 ~~~~l~~~~~ 242 (244)
...+++++++
T Consensus 81 ~~~~l~~~~l 90 (325)
T TIGR01187 81 VLEALRLVQL 90 (325)
T ss_pred HHHHHHHcCC
Confidence 4556666654
No 377
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=8e-09 Score=96.81 Aligned_cols=71 Identities=25% Similarity=0.388 Sum_probs=52.3
Q ss_pred cceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCC-CCCHH--HHHHHhhhcC------------CCCceehhhHhhhh
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELEFGICVLNLSER-GLTDD--RLNHLLSVAP------------QNSIILLEDIDAAF 219 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~-~~~~~--~~~~~~~~~~------------q~~~lf~deid~~~ 219 (244)
.-+||+||||.|||+|.+.||..++..+..++++|. ++++- ..|..++..| .++++++||||-+.
T Consensus 351 pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ 430 (782)
T COG0466 351 PILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMG 430 (782)
T ss_pred cEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCCeEEeechhhcc
Confidence 448999999999999999999999999999999983 33221 1222233333 46888899999987
Q ss_pred cc-cCcC
Q psy1371 220 VT-REES 225 (244)
Q Consensus 220 ~~-r~~~ 225 (244)
.. |+++
T Consensus 431 ss~rGDP 437 (782)
T COG0466 431 SSFRGDP 437 (782)
T ss_pred CCCCCCh
Confidence 64 4443
No 378
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.77 E-value=8e-10 Score=103.97 Aligned_cols=76 Identities=20% Similarity=0.096 Sum_probs=59.9
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHH
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDR 196 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~ 196 (244)
++++++++.|+....+++++ ++.++.|+.++|+||||||||||+++|+|++.|+.|.+.+++.
T Consensus 5 i~~~nls~~~~~~~~il~~i-----------s~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~------ 67 (552)
T TIGR03719 5 YTMNRVSKVVPPKKEILKDI-----------SLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG------ 67 (552)
T ss_pred EEEeeEEEecCCCCeeecCc-----------eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC------
Confidence 45677877775223578888 8888888889999999999999999999999999999987641
Q ss_pred HHHHhhhcCCCCcee
Q psy1371 197 LNHLLSVAPQNSIIL 211 (244)
Q Consensus 197 ~~~~~~~~~q~~~lf 211 (244)
..+++++|++.++
T Consensus 68 --~~i~~v~Q~~~~~ 80 (552)
T TIGR03719 68 --IKVGYLPQEPQLD 80 (552)
T ss_pred --CEEEEEeccCCCC
Confidence 2477888765443
No 379
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.76 E-value=1.8e-09 Score=100.34 Aligned_cols=61 Identities=11% Similarity=0.141 Sum_probs=49.3
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCC-CeEEEEeCCCCCC---H-HHHHHHhhhcCCCC
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEF-GICVLNLSERGLT---D-DRLNHLLSVAPQNS 208 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~-~~g~i~~~~~~~~---~-~~~~~~~~~~~q~~ 208 (244)
++.+..++.++|+||||||||||+++|+|.+.| +.|.+.+++.... . ..+++.+++++|+.
T Consensus 280 s~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 345 (500)
T TIGR02633 280 SFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDR 345 (500)
T ss_pred eeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcch
Confidence 666777777999999999999999999999985 7999999885442 1 34456688999874
No 380
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.76 E-value=7.4e-09 Score=86.01 Aligned_cols=42 Identities=19% Similarity=0.194 Sum_probs=38.8
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE 189 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~ 189 (244)
++.+..+..++|+|+||+|||||+|+|+|.++|+.|.+...+
T Consensus 47 sf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G 88 (249)
T COG1134 47 SFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG 88 (249)
T ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcc
Confidence 667777777999999999999999999999999999999887
No 381
>PLN03140 ABC transporter G family member; Provisional
Probab=98.76 E-value=2.9e-09 Score=109.46 Aligned_cols=95 Identities=17% Similarity=0.057 Sum_probs=65.5
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCC--CeEEEEeCCCCCCHHHHHHHhhhcCCCCcee-----hhhHhhhhc
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEF--GICVLNLSERGLTDDRLNHLLSVAPQNSIIL-----LEDIDAAFV 220 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~--~~g~i~~~~~~~~~~~~~~~~~~~~q~~~lf-----~deid~~~~ 220 (244)
++.+.+|+-++|.||||+|||||+++|+|...+ ..|.+.+++........++.+++++|+..++ .|++...+.
T Consensus 900 s~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~ 979 (1470)
T PLN03140 900 TGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAF 979 (1470)
T ss_pred EEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHH
Confidence 666777777999999999999999999998753 5789999987665556677889999875544 344443232
Q ss_pred ccC---cCcccHHHHHHHHHHhhhc
Q psy1371 221 TRE---ESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 221 ~r~---~~~~~~~~~~~~~l~~~~~ 242 (244)
.|. ...+...+..+.+++.+++
T Consensus 980 lr~~~~~~~~~~~~~v~~vl~~lgL 1004 (1470)
T PLN03140 980 LRLPKEVSKEEKMMFVDEVMELVEL 1004 (1470)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHCCC
Confidence 221 1122233455667777665
No 382
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.73 E-value=2.5e-08 Score=86.84 Aligned_cols=94 Identities=18% Similarity=0.281 Sum_probs=58.4
Q ss_pred CCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHHH
Q psy1371 118 PLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRL 197 (244)
Q Consensus 118 ~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~~ 197 (244)
+|+++......++.+...+...... -.....++|+||||+|||+++++++..+..+......... .....+
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~-~~~~~l 72 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR--------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPAL-EKPGDL 72 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchh-cCchhH
Confidence 4667766655555443333221111 1223458999999999999999999998876544332211 122344
Q ss_pred HHHhhhcCCCCceehhhHhhhhc
Q psy1371 198 NHLLSVAPQNSIILLEDIDAAFV 220 (244)
Q Consensus 198 ~~~~~~~~q~~~lf~deid~~~~ 220 (244)
...+....+..++|+||+|.+..
T Consensus 73 ~~~l~~~~~~~vl~iDEi~~l~~ 95 (305)
T TIGR00635 73 AAILTNLEEGDVLFIDEIHRLSP 95 (305)
T ss_pred HHHHHhcccCCEEEEehHhhhCH
Confidence 44455556778999999998753
No 383
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.73 E-value=7.7e-09 Score=96.24 Aligned_cols=61 Identities=16% Similarity=0.245 Sum_probs=48.8
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC----HHHHHHHhhhcCCCC
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT----DDRLNHLLSVAPQNS 208 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~----~~~~~~~~~~~~q~~ 208 (244)
++.+..++.++|+||||||||||+++|+|+++++.|.+.+++.... ....++.+++++|+.
T Consensus 273 sl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~ 337 (501)
T PRK11288 273 SFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDR 337 (501)
T ss_pred eEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCH
Confidence 4556667779999999999999999999999999999999875432 123455688899874
No 384
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.73 E-value=6.1e-08 Score=87.80 Aligned_cols=88 Identities=27% Similarity=0.387 Sum_probs=57.8
Q ss_pred CcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCC------CCCH-HHHHHHhhhc------CCCCceehhhHhhhhc
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSER------GLTD-DRLNHLLSVA------PQNSIILLEDIDAAFV 220 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~------~~~~-~~~~~~~~~~------~q~~~lf~deid~~~~ 220 (244)
...++|+||||||||+++++++..++.+...++.... +... ..+...+... .+++++|+||||.+..
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~ 187 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIAR 187 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhcc
Confidence 4569999999999999999999988877766654331 1111 2233322211 2568999999999987
Q ss_pred ccCcCc----ccHHHHHHHHHHhhh
Q psy1371 221 TREESS----QGLEDIDAAFVTREE 241 (244)
Q Consensus 221 ~r~~~~----~~~~~~~~~~l~~~~ 241 (244)
.+++.+ -+.+.+..+||+.+|
T Consensus 188 ~~~~~~~~~d~s~~~vQ~~LL~~Le 212 (412)
T PRK05342 188 KSENPSITRDVSGEGVQQALLKILE 212 (412)
T ss_pred ccCCCCcCCCcccHHHHHHHHHHHh
Confidence 643221 122456777777776
No 385
>KOG0061|consensus
Probab=98.71 E-value=6.9e-09 Score=98.53 Aligned_cols=103 Identities=18% Similarity=0.230 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC---CeEEEEeCCCCCCHHHHHHHhhhcCC
Q psy1371 130 DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF---GICVLNLSERGLTDDRLNHLLSVAPQ 206 (244)
Q Consensus 130 ~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~---~~g~i~~~~~~~~~~~~~~~~~~~~q 206 (244)
+.++++| +....+++-.++.||+|+|||||+++|+|.... ..|.+.++|.....+.+++..++|.|
T Consensus 43 k~iL~~v-----------sg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~Q 111 (613)
T KOG0061|consen 43 KTILKGV-----------SGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQ 111 (613)
T ss_pred ceeeeCc-----------EEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcc
Confidence 5677888 666667777899999999999999999999864 58999999977778889999999999
Q ss_pred CCcee-----hhhHhhhhcccCc---CcccHHHHHHHHHHhhhcC
Q psy1371 207 NSIIL-----LEDIDAAFVTREE---SSQGLEDIDAAFVTREESS 243 (244)
Q Consensus 207 ~~~lf-----~deid~~~~~r~~---~~~~~~~~~~~~l~~~~~~ 243 (244)
+..++ -|++...+.-|-. +..+.+...+..+..+++.
T Consensus 112 dD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~ 156 (613)
T KOG0061|consen 112 DDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE 156 (613)
T ss_pred cccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh
Confidence 87665 3444444444422 3455667777887777654
No 386
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.70 E-value=3.3e-09 Score=101.38 Aligned_cols=60 Identities=23% Similarity=0.339 Sum_probs=51.7
Q ss_pred CCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC
Q psy1371 118 PLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE 189 (244)
Q Consensus 118 ~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~ 189 (244)
.++++++.|+. ..+++++ ++.+..|..++|+||||||||||+|+|+|.+.|+.|.|.+++
T Consensus 3 ~i~nls~~~g~-~~~l~~v-----------s~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~ 62 (638)
T PRK10636 3 VFSSLQIRRGV-RVLLDNA-----------TATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPG 62 (638)
T ss_pred EEEEEEEEeCC-ceeecCc-----------EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC
Confidence 45677777764 3578888 888888888999999999999999999999999999998866
No 387
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.70 E-value=1.4e-08 Score=85.78 Aligned_cols=45 Identities=22% Similarity=0.237 Sum_probs=42.1
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL 192 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~ 192 (244)
++.+..++.++|+|.|||||||+.|+|.++..|+.|.|.+.+.++
T Consensus 33 sf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i 77 (268)
T COG4608 33 SFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDI 77 (268)
T ss_pred eEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcch
Confidence 888888888999999999999999999999999999999998654
No 388
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.69 E-value=5.7e-08 Score=94.86 Aligned_cols=69 Identities=28% Similarity=0.338 Sum_probs=50.8
Q ss_pred CCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCC--------------CCHHHHHHHhhhcC-CCCceehhhHhh
Q psy1371 153 YRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERG--------------LTDDRLNHLLSVAP-QNSIILLEDIDA 217 (244)
Q Consensus 153 ~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~--------------~~~~~~~~~~~~~~-q~~~lf~deid~ 217 (244)
.+..++|+||||||||+++++||+.+..+.+.+..++.. .....+.+.+..+. .++++++||||.
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~villDEidk 425 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDK 425 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCCEEEEechhh
Confidence 344699999999999999999999999988888765521 11123444444433 457899999999
Q ss_pred hhcc
Q psy1371 218 AFVT 221 (244)
Q Consensus 218 ~~~~ 221 (244)
+...
T Consensus 426 ~~~~ 429 (775)
T TIGR00763 426 IGSS 429 (775)
T ss_pred cCCc
Confidence 9864
No 389
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.69 E-value=2e-08 Score=79.30 Aligned_cols=96 Identities=16% Similarity=0.183 Sum_probs=69.9
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC-------CH----HHHHHHhhhcCCC-----Ccee
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL-------TD----DRLNHLLSVAPQN-----SIIL 211 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~-------~~----~~~~~~~~~~~q~-----~~lf 211 (244)
++.+..++-+.|.||||+||||++|+|-+-|.++.|.|.+.-.+. .. .-.++.++|+.|- -+--
T Consensus 31 slsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~a 110 (235)
T COG4778 31 SLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSA 110 (235)
T ss_pred eEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcch
Confidence 666666666799999999999999999999999999988743211 11 1234668888873 2222
Q ss_pred hhhHhhhhcccCcCcccHHHHHHHHHHhhhcC
Q psy1371 212 LEDIDAAFVTREESSQGLEDIDAAFVTREESS 243 (244)
Q Consensus 212 ~deid~~~~~r~~~~~~~~~~~~~~l~~~~~~ 243 (244)
+|-+...+..++...+...+....+|+|+.+.
T Consensus 111 LdVvaePll~~gv~~~~a~~~a~~Ll~rLnlp 142 (235)
T COG4778 111 LDVVAEPLLARGVPREVARAKAADLLTRLNLP 142 (235)
T ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCC
Confidence 56665556667777777788888999998764
No 390
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.69 E-value=6.8e-09 Score=80.37 Aligned_cols=64 Identities=25% Similarity=0.364 Sum_probs=52.4
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCC---eEEEEeCCCCCCH-HHHHHHhhhcCCCCcee
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFG---ICVLNLSERGLTD-DRLNHLLSVAPQNSIIL 211 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~---~g~i~~~~~~~~~-~~~~~~~~~~~q~~~lf 211 (244)
++.+.++.-+-+.||+|||||||+.-+.|.+.+. .|++.+++...+. ..-++.++..+|+..+|
T Consensus 22 n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLF 89 (213)
T COG4136 22 NFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLF 89 (213)
T ss_pred eEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccc
Confidence 6777777778999999999999999999998775 4888888865543 23567889999998887
No 391
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1.5e-08 Score=80.98 Aligned_cols=58 Identities=17% Similarity=0.248 Sum_probs=46.2
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH--HHHHHHhhhcC
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD--DRLNHLLSVAP 205 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~--~~~~~~~~~~~ 205 (244)
++.+.+++-+-+.||||+|||||+|+|||++.|+.|.+.+.+.+.+. +..++.+-|.-
T Consensus 22 ~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLG 81 (209)
T COG4133 22 SFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLG 81 (209)
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhh
Confidence 56666777789999999999999999999999999999999855543 23455555553
No 392
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.68 E-value=3e-08 Score=90.15 Aligned_cols=96 Identities=19% Similarity=0.347 Sum_probs=61.4
Q ss_pred CCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCC
Q psy1371 112 HPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERG 191 (244)
Q Consensus 112 ~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~ 191 (244)
+..+|.++++++.+...... .+.+...+... ....++|+|||||||||++++++.....+...+.....
T Consensus 4 ~~~RP~~l~d~vGq~~~v~~-~~~L~~~i~~~---------~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~- 72 (413)
T PRK13342 4 ERMRPKTLDEVVGQEHLLGP-GKPLRRMIEAG---------RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS- 72 (413)
T ss_pred hhhCCCCHHHhcCcHHHhCc-chHHHHHHHcC---------CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc-
Confidence 45667889998877643221 01122222211 12358999999999999999999988877666654432
Q ss_pred CCHHHHHHHhhhcC------CCCceehhhHhhhh
Q psy1371 192 LTDDRLNHLLSVAP------QNSIILLEDIDAAF 219 (244)
Q Consensus 192 ~~~~~~~~~~~~~~------q~~~lf~deid~~~ 219 (244)
..+.+++.+..+. +..++|+||+|.+.
T Consensus 73 -~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~ 105 (413)
T PRK13342 73 -GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN 105 (413)
T ss_pred -cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC
Confidence 2334555544432 45789999999774
No 393
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.67 E-value=2.8e-08 Score=89.78 Aligned_cols=75 Identities=15% Similarity=0.199 Sum_probs=59.1
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC----CHHHHHHHhhhcCCCCcee--hhhHhhhhcc
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL----TDDRLNHLLSVAPQNSIIL--LEDIDAAFVT 221 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~----~~~~~~~~~~~~~q~~~lf--~deid~~~~~ 221 (244)
++.+.++.-.+|.|.||+|||||+++|.|.|.|+.|+|.++|+.. +.+.++.-+++|.|...|+ +--.+|+...
T Consensus 24 ~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg 103 (501)
T COG3845 24 SLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILG 103 (501)
T ss_pred eeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhc
Confidence 777777777899999999999999999999999999999999433 3456777899999976665 2223555444
Q ss_pred c
Q psy1371 222 R 222 (244)
Q Consensus 222 r 222 (244)
.
T Consensus 104 ~ 104 (501)
T COG3845 104 L 104 (501)
T ss_pred C
Confidence 3
No 394
>PLN03025 replication factor C subunit; Provisional
Probab=98.67 E-value=4.3e-08 Score=86.14 Aligned_cols=98 Identities=26% Similarity=0.372 Sum_probs=58.8
Q ss_pred cCCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCC---eEEEE
Q psy1371 110 FGHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFG---ICVLN 186 (244)
Q Consensus 110 ~~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~---~g~i~ 186 (244)
|.++++|.+++++..+.+..+.+ ...+..+ .+ ..++|+||||+||||+++++++.+... ...+.
T Consensus 3 w~~kyrP~~l~~~~g~~~~~~~L----~~~~~~~------~~---~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~e 69 (319)
T PLN03025 3 WVEKYRPTKLDDIVGNEDAVSRL----QVIARDG------NM---PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLE 69 (319)
T ss_pred hhhhcCCCCHHHhcCcHHHHHHH----HHHHhcC------CC---ceEEEECCCCCCHHHHHHHHHHHHhcccCccceee
Confidence 45678899999998776544433 2222211 11 248999999999999999999886322 12333
Q ss_pred eCCCCC-CHHHHHHHhhh---c------CCCCceehhhHhhhhc
Q psy1371 187 LSERGL-TDDRLNHLLSV---A------PQNSIILLEDIDAAFV 220 (244)
Q Consensus 187 ~~~~~~-~~~~~~~~~~~---~------~q~~~lf~deid~~~~ 220 (244)
++..+. ....++..+.. . .+..++++||+|.+..
T Consensus 70 ln~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~ 113 (319)
T PLN03025 70 LNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS 113 (319)
T ss_pred ecccccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH
Confidence 333211 22234433221 1 1246889999998853
No 395
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.66 E-value=5e-09 Score=100.17 Aligned_cols=61 Identities=20% Similarity=0.243 Sum_probs=51.8
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE 189 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~ 189 (244)
++++++++.++. ..+++++ ++.++.|..++|+||||||||||+++|+|.+.++.|.|.+++
T Consensus 4 l~i~~ls~~~~~-~~il~~i-----------s~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~ 64 (635)
T PRK11147 4 ISIHGAWLSFSD-APLLDNA-----------ELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQ 64 (635)
T ss_pred EEEeeEEEEeCC-ceeEeCc-----------EEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCC
Confidence 346677777754 3577888 888888888999999999999999999999999999998765
No 396
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.65 E-value=6.4e-09 Score=76.48 Aligned_cols=64 Identities=20% Similarity=0.191 Sum_probs=45.9
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---HHHHHHHhhhcCCCCceehhhH-hhhh
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT---DDRLNHLLSVAPQNSIILLEDI-DAAF 219 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~---~~~~~~~~~~~~q~~~lf~dei-d~~~ 219 (244)
++.+..++.++|.||||||||||++++. .|.+.+.+.+.. ....++...+++|+ +|.+.+ |++.
T Consensus 9 sl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~Ni~ 76 (107)
T cd00820 9 LVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRLNIF 76 (107)
T ss_pred EEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHhhce
Confidence 5566777889999999999999999987 455666664432 23344556677777 777777 6664
No 397
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.64 E-value=1e-08 Score=84.96 Aligned_cols=42 Identities=21% Similarity=0.218 Sum_probs=37.6
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEE-eCC
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLN-LSE 189 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~-~~~ 189 (244)
++.++.++.++|.||||||||||+++|+|.+.++.|.+. +++
T Consensus 7 s~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~ 49 (213)
T PRK15177 7 DFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRG 49 (213)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecC
Confidence 677788888999999999999999999999999999986 554
No 398
>PLN03140 ABC transporter G family member; Provisional
Probab=98.64 E-value=1.5e-08 Score=104.20 Aligned_cols=70 Identities=27% Similarity=0.327 Sum_probs=54.5
Q ss_pred CCCCCCcceEEEcCCCCChhHHHHHHhcccCCC---eEEEEeCCCCCCHHHHHHHhhhcCCCCcee-----hhhHhhh
Q psy1371 149 RGIPYRRGYLLYGPPGCGKSSFITALAGELEFG---ICVLNLSERGLTDDRLNHLLSVAPQNSIIL-----LEDIDAA 218 (244)
Q Consensus 149 ~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~---~g~i~~~~~~~~~~~~~~~~~~~~q~~~lf-----~deid~~ 218 (244)
+.+++++-++|.||||||||||+++|+|.+.++ .|.+.++|.+..+...++.+++++|+..++ .|+++..
T Consensus 186 ~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~ 263 (1470)
T PLN03140 186 GIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFS 263 (1470)
T ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHH
Confidence 346667779999999999999999999999887 899999986654433466789999875444 4555543
No 399
>KOG2004|consensus
Probab=98.64 E-value=1.3e-07 Score=88.80 Aligned_cols=70 Identities=20% Similarity=0.360 Sum_probs=52.3
Q ss_pred CCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCC-CCCH-------------HHHHHHhhhcC-CCCceehhhHh
Q psy1371 152 PYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSER-GLTD-------------DRLNHLLSVAP-QNSIILLEDID 216 (244)
Q Consensus 152 ~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~-~~~~-------------~~~~~~~~~~~-q~~~lf~deid 216 (244)
..|+-++|+||||.|||+++|.||+.++..+..++++|. ++.+ .++-+.+..+. +++++++||||
T Consensus 436 ~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvD 515 (906)
T KOG2004|consen 436 VQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVD 515 (906)
T ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCceEEeehhh
Confidence 345668999999999999999999999999999999882 2221 12222233332 57899999999
Q ss_pred hhhcc
Q psy1371 217 AAFVT 221 (244)
Q Consensus 217 ~~~~~ 221 (244)
.+...
T Consensus 516 KlG~g 520 (906)
T KOG2004|consen 516 KLGSG 520 (906)
T ss_pred hhCCC
Confidence 99853
No 400
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.63 E-value=4e-08 Score=89.86 Aligned_cols=59 Identities=19% Similarity=0.375 Sum_probs=42.7
Q ss_pred cCCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 110 FGHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 110 ~~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
+.++++|.+|++|.++......+...+ ..+. .+..++|+||+||||||+++++++.+..
T Consensus 8 L~~KyRP~~f~dvVGQe~iv~~L~~~i----~~~r--------i~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 8 LSRKYRPQFFRDVIHQDLAIGALQNAL----KSGK--------IGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred hHHHhCCCCHHHHhChHHHHHHHHHHH----HcCC--------CCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 456678899999988876555443333 2211 1234799999999999999999998765
No 401
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.63 E-value=7.4e-08 Score=77.00 Aligned_cols=60 Identities=20% Similarity=0.230 Sum_probs=50.1
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC--H-HHHHHHhhhcCCC
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT--D-DRLNHLLSVAPQN 207 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~--~-~~~~~~~~~~~q~ 207 (244)
+|.+..+++++++|.||+|||||+|+|+|...|+.|.+.+++.... + ....+.+.+++|+
T Consensus 33 SFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQD 95 (267)
T COG4167 33 SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQD 95 (267)
T ss_pred EEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecC
Confidence 7778888899999999999999999999999999999999995432 2 2344667788875
No 402
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.63 E-value=1.5e-08 Score=94.35 Aligned_cols=61 Identities=15% Similarity=0.160 Sum_probs=49.4
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---H-HHHHHHhhhcCCCC
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT---D-DRLNHLLSVAPQNS 208 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~---~-~~~~~~~~~~~q~~ 208 (244)
++.+..++.++|+||||||||||+++|+|+..++.|.+.+++.... . ..+++.+++++|+.
T Consensus 272 sl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~ 336 (501)
T PRK10762 272 SFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDR 336 (501)
T ss_pred eEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCcc
Confidence 5566677779999999999999999999999999999999885432 1 23455689999874
No 403
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.63 E-value=5.5e-08 Score=89.60 Aligned_cols=58 Identities=24% Similarity=0.393 Sum_probs=41.4
Q ss_pred CCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 111 GHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 111 ~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
...++|.+|+++.++......+.+.+ ..+. .+..++|+||||+||||+++++++.+..
T Consensus 5 ~~kyRP~~~~divGq~~i~~~L~~~i----~~~~--------l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 5 YRKYRPKTFSEVVGQDHVKKLIINAL----KKNS--------ISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred HHHHCCCCHHHccCcHHHHHHHHHHH----HcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 34577889999998876544443322 2221 2345799999999999999999987654
No 404
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.62 E-value=1.2e-07 Score=92.08 Aligned_cols=69 Identities=28% Similarity=0.481 Sum_probs=49.6
Q ss_pred CcceEEEcCCCCChhHHHHHHhccc----------CCCeEEEEeCC-------CCCCHHHHHHHhhhcC--CCCceehhh
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAGEL----------EFGICVLNLSE-------RGLTDDRLNHLLSVAP--QNSIILLED 214 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~~~----------~~~~g~i~~~~-------~~~~~~~~~~~~~~~~--q~~~lf~de 214 (244)
+..++|+||||||||++++.++..+ +.....+++.. .+..++.+++.+..+. .+++||+||
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDE 282 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDE 282 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEec
Confidence 4568999999999999999999876 22333333222 2233467888888764 478999999
Q ss_pred Hhhhhccc
Q psy1371 215 IDAAFVTR 222 (244)
Q Consensus 215 id~~~~~r 222 (244)
+|.+...+
T Consensus 283 ih~l~~~g 290 (731)
T TIGR02639 283 IHTIVGAG 290 (731)
T ss_pred HHHHhccC
Confidence 99987643
No 405
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.62 E-value=6.5e-09 Score=97.40 Aligned_cols=60 Identities=27% Similarity=0.472 Sum_probs=50.2
Q ss_pred CCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC
Q psy1371 118 PLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE 189 (244)
Q Consensus 118 ~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~ 189 (244)
+++++++.|+. ..+++++ ++.+..++.++|+||||||||||+++|+|++.++.|.+.+++
T Consensus 3 ~i~~ls~~~~~-~~il~~v-----------sl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~ 62 (530)
T PRK15064 3 STANITMQFGA-KPLFENI-----------SVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDP 62 (530)
T ss_pred EEEEEEEEeCC-cEeEeCC-----------EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC
Confidence 35667766653 3477888 788888888999999999999999999999999999998875
No 406
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.60 E-value=1.1e-08 Score=95.74 Aligned_cols=73 Identities=16% Similarity=0.242 Sum_probs=59.7
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHH
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDD 195 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~ 195 (244)
.+.++++.+.|+. ..+++++ ++.+..|+.++|+||||||||||+++|+|.+.|+.|.+.+++.
T Consensus 319 ~l~~~~l~~~~~~-~~~l~~i-----------s~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~----- 381 (530)
T PRK15064 319 ALEVENLTKGFDN-GPLFKNL-----------NLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN----- 381 (530)
T ss_pred eEEEEeeEEeeCC-ceeecCc-----------EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----
Confidence 3567888888754 3477888 7888888889999999999999999999999999999998762
Q ss_pred HHHHHhhhcCCCC
Q psy1371 196 RLNHLLSVAPQNS 208 (244)
Q Consensus 196 ~~~~~~~~~~q~~ 208 (244)
+.+++++|+.
T Consensus 382 ---~~i~~~~q~~ 391 (530)
T PRK15064 382 ---ANIGYYAQDH 391 (530)
T ss_pred ---eEEEEEcccc
Confidence 3467777754
No 407
>KOG0927|consensus
Probab=98.60 E-value=2.5e-08 Score=90.93 Aligned_cols=65 Identities=23% Similarity=0.363 Sum_probs=56.9
Q ss_pred CCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeC
Q psy1371 113 PKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLS 188 (244)
Q Consensus 113 ~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~ 188 (244)
+.+.+.++||.|.|.....+.+++ ++++.....++++||||||||||+|++.+.+.|..|.+...
T Consensus 386 p~pvi~~~nv~F~y~~~~~iy~~l-----------~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~ 450 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNPMIYKKL-----------NFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRH 450 (614)
T ss_pred CCCeEEEeccccCCCCcchhhhhh-----------hcccCcccceeEecCCCCchhhhHHHHhhcccccccccccc
Confidence 344577899999998766788888 99999999999999999999999999999999988887643
No 408
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.60 E-value=2.1e-07 Score=84.15 Aligned_cols=87 Identities=29% Similarity=0.399 Sum_probs=54.9
Q ss_pred cceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC------CCCC-HHHHHHHhhhc------CCCCceehhhHhhhhcc
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE------RGLT-DDRLNHLLSVA------PQNSIILLEDIDAAFVT 221 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~------~~~~-~~~~~~~~~~~------~q~~~lf~deid~~~~~ 221 (244)
..++|+||||||||+++++|+..++.+...++... .+.. +..+.+.+... .++.++|+||+|.+...
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~ 196 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRK 196 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchh
Confidence 45999999999999999999998877665544322 1111 12233332221 25679999999988875
Q ss_pred cCcCcc----cHHHHHHHHHHhhh
Q psy1371 222 REESSQ----GLEDIDAAFVTREE 241 (244)
Q Consensus 222 r~~~~~----~~~~~~~~~l~~~~ 241 (244)
+...+- +.+.+.++||+-++
T Consensus 197 ~~~~s~~~dvsg~~vq~~LL~iLe 220 (413)
T TIGR00382 197 SENPSITRDVSGEGVQQALLKIIE 220 (413)
T ss_pred hccccccccccchhHHHHHHHHhh
Confidence 432211 12356666666654
No 409
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.59 E-value=3e-08 Score=85.55 Aligned_cols=102 Identities=13% Similarity=0.137 Sum_probs=68.2
Q ss_pred HHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC-C----CeEEEEeCCC---CCCHHHHH----
Q psy1371 131 RILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE-F----GICVLNLSER---GLTDDRLN---- 198 (244)
Q Consensus 131 ~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~-~----~~g~i~~~~~---~~~~~~~~---- 198 (244)
.+++++ ++.+..++.++|+|.||||||+++++|+++++ + ..|++.+++. ..+++.++
T Consensus 19 ~av~~v-----------s~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG 87 (316)
T COG0444 19 KAVDGV-----------SFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRG 87 (316)
T ss_pred EEEece-----------eEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcC
Confidence 466788 77888888899999999999999999999997 3 2478888885 34555433
Q ss_pred HHhhhcCCCCcee-------hhhH-hhhhcccCc-CcccHHHHHHHHHHhhhcC
Q psy1371 199 HLLSVAPQNSIIL-------LEDI-DAAFVTREE-SSQGLEDIDAAFVTREESS 243 (244)
Q Consensus 199 ~~~~~~~q~~~lf-------~dei-d~~~~~r~~-~~~~~~~~~~~~l~~~~~~ 243 (244)
+.+++++|++.-- -+-+ +.+...... ...+..+....+|+++++.
T Consensus 88 ~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~ 141 (316)
T COG0444 88 KEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIP 141 (316)
T ss_pred ceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCC
Confidence 3588899874322 2223 333322222 2334456667777777664
No 410
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.5e-07 Score=81.02 Aligned_cols=87 Identities=28% Similarity=0.371 Sum_probs=59.9
Q ss_pred cceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC------CCCCHH-HHHHHhhhcC------CCCceehhhHhhhhcc
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE------RGLTDD-RLNHLLSVAP------QNSIILLEDIDAAFVT 221 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~------~~~~~~-~~~~~~~~~~------q~~~lf~deid~~~~~ 221 (244)
+.++++||+|||||.|++.||+.++.++..-+... .++.-. -+-+++..+. |..++|+||||.+++.
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIark 177 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARK 177 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhcc
Confidence 44999999999999999999999998865544322 233222 2344444332 6789999999999987
Q ss_pred cCcCcc----cHHHHHHHHHHhhh
Q psy1371 222 REESSQ----GLEDIDAAFVTREE 241 (244)
Q Consensus 222 r~~~~~----~~~~~~~~~l~~~~ 241 (244)
.++.+- +.+-+..++|.-++
T Consensus 178 SeN~SITRDVSGEGVQQALLKiiE 201 (408)
T COG1219 178 SENPSITRDVSGEGVQQALLKIIE 201 (408)
T ss_pred CCCCCcccccCchHHHHHHHHHHc
Confidence 654432 23556667776554
No 411
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=8.3e-08 Score=85.85 Aligned_cols=57 Identities=19% Similarity=0.304 Sum_probs=40.9
Q ss_pred CCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC
Q psy1371 111 GHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 111 ~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
.++++|.+|+++.++....+.+.+.+ ..+. .+..++|+||+|+||||++++++..+.
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~~l~~~~----~~~~--------~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVTAISNGL----SLGR--------IHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred HHHhCCCchhhccChHHHHHHHHHHH----HcCC--------CCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 45677889999988776555443333 2211 223479999999999999999998765
No 412
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.58 E-value=2.1e-08 Score=84.98 Aligned_cols=41 Identities=29% Similarity=0.386 Sum_probs=36.2
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCC
Q psy1371 150 GIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSER 190 (244)
Q Consensus 150 ~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~ 190 (244)
.+..++.++|+||||||||||+++|+|.+.++.|.+.+++.
T Consensus 21 ~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~ 61 (246)
T cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD 61 (246)
T ss_pred CcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc
Confidence 34566779999999999999999999999999999988763
No 413
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.58 E-value=2.1e-08 Score=85.82 Aligned_cols=42 Identities=19% Similarity=0.143 Sum_probs=38.6
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE 189 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~ 189 (244)
++.+++++.++|.||||+|||||+++|+|++.++.|.+.+++
T Consensus 44 s~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g 85 (264)
T PRK13546 44 SLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG 85 (264)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECC
Confidence 677778888999999999999999999999999999998876
No 414
>KOG0059|consensus
Probab=98.57 E-value=7e-08 Score=95.40 Aligned_cols=95 Identities=16% Similarity=0.150 Sum_probs=76.7
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC----HHHHHHHhhhcCCCCcee-----hhhHhhh
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT----DDRLNHLLSVAPQNSIIL-----LEDIDAA 218 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~----~~~~~~~~~~~~q~~~lf-----~deid~~ 218 (244)
++.+++++-.++.||||+||||+.+++.|...++.|.+.+.+.+.. ..+.++.+++.||...++ .|..+..
T Consensus 585 s~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~ 664 (885)
T KOG0059|consen 585 SFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFY 664 (885)
T ss_pred EEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHH
Confidence 4556666668999999999999999999999999999999875543 345889999999976555 5666888
Q ss_pred hcccCcCcccHHHHHHHHHHhhhc
Q psy1371 219 FVTREESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 219 ~~~r~~~~~~~~~~~~~~l~~~~~ 242 (244)
+.-|+-.....++..+.+++.+++
T Consensus 665 arlrG~~~~di~~~v~~ll~~~~L 688 (885)
T KOG0059|consen 665 ARLRGLPRSDIGSAIEKLLRLVGL 688 (885)
T ss_pred HHHcCCChhHHHHHHHHHHHHcCC
Confidence 888887766777778888887765
No 415
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.57 E-value=1.5e-07 Score=82.44 Aligned_cols=95 Identities=17% Similarity=0.245 Sum_probs=61.9
Q ss_pred cCCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC
Q psy1371 110 FGHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE 189 (244)
Q Consensus 110 ~~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~ 189 (244)
|.++++|.+++++.++....+.+...+ ..+. .+..++++||||+|||+++++++.....+...++...
T Consensus 11 w~~kyrP~~~~~~~~~~~~~~~l~~~~----~~~~--------~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~ 78 (316)
T PHA02544 11 WEQKYRPSTIDECILPAADKETFKSIV----KKGR--------IPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD 78 (316)
T ss_pred ceeccCCCcHHHhcCcHHHHHHHHHHH----hcCC--------CCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc
Confidence 456788899999998887665554444 2111 1234566899999999999999998876666665544
Q ss_pred CCCCHHHHHHH----hhhc---CCCCceehhhHhhh
Q psy1371 190 RGLTDDRLNHL----LSVA---PQNSIILLEDIDAA 218 (244)
Q Consensus 190 ~~~~~~~~~~~----~~~~---~q~~~lf~deid~~ 218 (244)
+ ....++.. .... ....++++||+|.+
T Consensus 79 -~-~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l 112 (316)
T PHA02544 79 -C-RIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRL 112 (316)
T ss_pred -c-cHHHHHHHHHHHHHhhcccCCCeEEEEECcccc
Confidence 1 12222221 1112 24578899999877
No 416
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.57 E-value=1.1e-08 Score=94.54 Aligned_cols=63 Identities=19% Similarity=0.210 Sum_probs=52.8
Q ss_pred CCCCccccChhHH--HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCC
Q psy1371 117 RPLNSVVLDSGVA--DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSER 190 (244)
Q Consensus 117 ~~~~~v~~~~~~~--~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~ 190 (244)
+.++++.+.++.. ..+++++ ++.+++|+.++|+||||+|||||+++|+|++.|+.|.+.+++.
T Consensus 22 L~lknL~~~~~~~~~~~IL~nV-----------SfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~ 86 (549)
T PRK13545 22 DKLKDLFFRSKDGEYHYALNNI-----------SFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGS 86 (549)
T ss_pred eEEEEEEEecCCCccceEEeee-----------EEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 5577887776542 2467777 8888888889999999999999999999999999999998773
No 417
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.56 E-value=8e-08 Score=72.32 Aligned_cols=68 Identities=28% Similarity=0.403 Sum_probs=45.5
Q ss_pred CcceEEEcCCCCChhHHHHHHhcccCCCe-EEEEeCCC--C-------------------CCHHHHHHHhhhcCC--CCc
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAGELEFGI-CVLNLSER--G-------------------LTDDRLNHLLSVAPQ--NSI 209 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~~~~~~~-g~i~~~~~--~-------------------~~~~~~~~~~~~~~q--~~~ 209 (244)
+..++|+|||||||||+++.+++.+.... ..+.++.. . ......+..+..+.. ..+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 35589999999999999999999987763 23333321 0 112234445555543 388
Q ss_pred eehhhHhhhhcc
Q psy1371 210 ILLEDIDAAFVT 221 (244)
Q Consensus 210 lf~deid~~~~~ 221 (244)
+++||++.+...
T Consensus 82 iiiDei~~~~~~ 93 (148)
T smart00382 82 LILDEITSLLDA 93 (148)
T ss_pred EEEECCcccCCH
Confidence 999999887654
No 418
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.55 E-value=2.7e-08 Score=102.37 Aligned_cols=96 Identities=16% Similarity=0.128 Sum_probs=62.1
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhccc----CCCeEEEEeCCCCCCH--HHHHHHhhhcCCCCcee-----hhhHh
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGEL----EFGICVLNLSERGLTD--DRLNHLLSVAPQNSIIL-----LEDID 216 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~----~~~~g~i~~~~~~~~~--~~~~~~~~~~~q~~~lf-----~deid 216 (244)
++.+.+|+-++|.||||+|||||+|+|+|.. .+..|.+.++|.+..+ ...++.+++++|+..++ .|+++
T Consensus 81 s~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~ 160 (1394)
T TIGR00956 81 DGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLD 160 (1394)
T ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHH
Confidence 3456666679999999999999999999986 4578999999865532 22345578889875444 34454
Q ss_pred hhhcccC-------cCccc-HHHHHHHHHHhhhcC
Q psy1371 217 AAFVTRE-------ESSQG-LEDIDAAFVTREESS 243 (244)
Q Consensus 217 ~~~~~r~-------~~~~~-~~~~~~~~l~~~~~~ 243 (244)
..+..|. ...++ .++..+.+++.+++.
T Consensus 161 f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~ 195 (1394)
T TIGR00956 161 FAARCKTPQNRPDGVSREEYAKHIADVYMATYGLS 195 (1394)
T ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcc
Confidence 3332221 11112 223445677777664
No 419
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.55 E-value=3.9e-07 Score=88.79 Aligned_cols=69 Identities=23% Similarity=0.294 Sum_probs=50.2
Q ss_pred CCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC-H-------------HHHHHHhhhcC-CCCceehhhHhh
Q psy1371 153 YRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT-D-------------DRLNHLLSVAP-QNSIILLEDIDA 217 (244)
Q Consensus 153 ~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~-~-------------~~~~~~~~~~~-q~~~lf~deid~ 217 (244)
.+..++|+||||+||||+++.+++.++.+.+.+++++.... + ..+.+.+..+. .++++++||+|.
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk 427 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDK 427 (784)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhh
Confidence 44558999999999999999999999999888887763211 0 12223333333 467899999998
Q ss_pred hhcc
Q psy1371 218 AFVT 221 (244)
Q Consensus 218 ~~~~ 221 (244)
+...
T Consensus 428 ~~~~ 431 (784)
T PRK10787 428 MSSD 431 (784)
T ss_pred cccc
Confidence 8754
No 420
>PLN03073 ABC transporter F family; Provisional
Probab=98.54 E-value=1.3e-08 Score=98.13 Aligned_cols=73 Identities=19% Similarity=0.296 Sum_probs=57.8
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHH
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDR 196 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~ 196 (244)
+.++++.+.|+....+++++ ++.+..+..++|+||||||||||+++|+|++.|+.|.+.++..
T Consensus 509 L~~~~ls~~y~~~~~il~~v-----------sl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~------ 571 (718)
T PLN03073 509 ISFSDASFGYPGGPLLFKNL-----------NFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK------ 571 (718)
T ss_pred EEEEeeEEEeCCCCeeEecc-----------EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc------
Confidence 56788888875333467888 8888888889999999999999999999999999999987541
Q ss_pred HHHHhhhcCCCC
Q psy1371 197 LNHLLSVAPQNS 208 (244)
Q Consensus 197 ~~~~~~~~~q~~ 208 (244)
..+++++|..
T Consensus 572 --~~igyv~Q~~ 581 (718)
T PLN03073 572 --VRMAVFSQHH 581 (718)
T ss_pred --eeEEEEeccc
Confidence 2355666643
No 421
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.54 E-value=1.6e-08 Score=96.65 Aligned_cols=61 Identities=30% Similarity=0.301 Sum_probs=52.4
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE 189 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~ 189 (244)
+.++++.+.|+. ..+++++ ++.+..|..++|+||||||||||+++|+|.+.|+.|.+.++.
T Consensus 313 l~~~~l~~~y~~-~~il~~i-----------sl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~ 373 (638)
T PRK10636 313 LKMEKVSAGYGD-RIILDSI-----------KLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAK 373 (638)
T ss_pred EEEEeeEEEeCC-eeeeccc-----------eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC
Confidence 567888887754 3477888 888888888999999999999999999999999999998863
No 422
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.54 E-value=1.6e-07 Score=89.65 Aligned_cols=98 Identities=17% Similarity=0.282 Sum_probs=61.7
Q ss_pred CCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCe--------
Q psy1371 111 GHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGI-------- 182 (244)
Q Consensus 111 ~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~-------- 182 (244)
.+++++.+|++|+++....+.+.+.+ ..+. ....++|+||+|+||||+++++++.+....
T Consensus 7 arKYRPqtFdEVIGQe~Vv~~L~~aL----~~gR--------L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG 74 (830)
T PRK07003 7 ARKWRPKDFASLVGQEHVVRALTHAL----DGGR--------LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCG 74 (830)
T ss_pred HHHhCCCcHHHHcCcHHHHHHHHHHH----hcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCc
Confidence 45678899999998876555443333 2211 223479999999999999999998775421
Q ss_pred --------------EEEEeCCC-CCCHHHHHHHhhhc---C---CCCceehhhHhhhhc
Q psy1371 183 --------------CVLNLSER-GLTDDRLNHLLSVA---P---QNSIILLEDIDAAFV 220 (244)
Q Consensus 183 --------------g~i~~~~~-~~~~~~~~~~~~~~---~---q~~~lf~deid~~~~ 220 (244)
..+.++.. ....+.+|+.+..+ + ...++++||+|.+..
T Consensus 75 ~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~ 133 (830)
T PRK07003 75 VCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN 133 (830)
T ss_pred ccHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH
Confidence 12333321 12234455555443 2 235888999998843
No 423
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=1.1e-07 Score=88.54 Aligned_cols=99 Identities=18% Similarity=0.274 Sum_probs=62.7
Q ss_pred cCCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeE------
Q psy1371 110 FGHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGIC------ 183 (244)
Q Consensus 110 ~~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g------ 183 (244)
+.++++|.+|++|+++....+.+.+.+ ..+. .+..++|+||+|+||||+++++++.+....+
T Consensus 6 l~~kyRP~~f~divGq~~v~~~L~~~~----~~~~--------l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pC 73 (509)
T PRK14958 6 LARKWRPRCFQEVIGQAPVVRALSNAL----DQQY--------LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPC 73 (509)
T ss_pred HHHHHCCCCHHHhcCCHHHHHHHHHHH----HhCC--------CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccC
Confidence 345678899999998876655544443 2211 1234799999999999999999997754211
Q ss_pred ----------------EEEeCC-CCCCHHHHHHHhh---hcCC---CCceehhhHhhhhc
Q psy1371 184 ----------------VLNLSE-RGLTDDRLNHLLS---VAPQ---NSIILLEDIDAAFV 220 (244)
Q Consensus 184 ----------------~i~~~~-~~~~~~~~~~~~~---~~~q---~~~lf~deid~~~~ 220 (244)
.+.++. ....-+.+|+.+. +.+. ..++++||+|.+..
T Consensus 74 g~C~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~ 133 (509)
T PRK14958 74 NDCENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG 133 (509)
T ss_pred CCCHHHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH
Confidence 222332 1223344555544 3342 25888999998853
No 424
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.53 E-value=3.8e-07 Score=74.70 Aligned_cols=82 Identities=23% Similarity=0.271 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH---HHHHHHhhhcCC
Q psy1371 130 DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD---DRLNHLLSVAPQ 206 (244)
Q Consensus 130 ~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~---~~~~~~~~~~~q 206 (244)
+.+++.+ ++.++.+.-+-+.|.||+||||++++|+|.+.++.|.|.+++.+++. ......++.|+|
T Consensus 19 k~~l~~~-----------sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQ 87 (263)
T COG1101 19 KRALNGL-----------SLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQ 87 (263)
T ss_pred HHHHhcC-----------ceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhc
Confidence 5678888 78888888889999999999999999999999999999999976654 334456778888
Q ss_pred CC------ceehhhHhhhhccc
Q psy1371 207 NS------IILLEDIDAAFVTR 222 (244)
Q Consensus 207 ~~------~lf~deid~~~~~r 222 (244)
++ -+-++|=-.++..|
T Consensus 88 dp~~gt~~~lTieENl~la~~R 109 (263)
T COG1101 88 DPLAGTAPELTIEENLALAESR 109 (263)
T ss_pred chhhCCcccccHHHHHHHHHhc
Confidence 63 33355544455444
No 425
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=1.7e-07 Score=90.95 Aligned_cols=59 Identities=22% Similarity=0.323 Sum_probs=41.7
Q ss_pred CCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCC
Q psy1371 111 GHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFG 181 (244)
Q Consensus 111 ~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~ 181 (244)
.++++|.+|++|.++....+.+.+. +..+. .+..++|+||+||||||++|++++.+...
T Consensus 7 aeKyRP~tFddIIGQe~Iv~~Lkna----I~~~r--------l~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 7 ARKWRPATFEQMVGQSHVLHALTNA----LTQQR--------LHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHH----HHhCC--------CCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 4567788999999877655444333 32221 12346899999999999999999887653
No 426
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.53 E-value=3.2e-08 Score=92.32 Aligned_cols=60 Identities=18% Similarity=0.169 Sum_probs=48.0
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---HH-HHHHHhhhcCCC
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT---DD-RLNHLLSVAPQN 207 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~---~~-~~~~~~~~~~q~ 207 (244)
++.++.++.++|+||||||||||+++|+|.+.|+.|.+.+++.+.. .. ..++.+++++|+
T Consensus 283 sl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~ 346 (510)
T PRK15439 283 SLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPED 346 (510)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCC
Confidence 5666677779999999999999999999999999999999885432 22 234458889886
No 427
>KOG2028|consensus
Probab=98.52 E-value=1.2e-07 Score=83.07 Aligned_cols=65 Identities=20% Similarity=0.439 Sum_probs=48.2
Q ss_pred eEEEcCCCCChhHHHHHHhcccCCC-eEEEEeCCCCCCHHHHHHHhhhcC-------CCCceehhhHhhhhcc
Q psy1371 157 YLLYGPPGCGKSSFITALAGELEFG-ICVLNLSERGLTDDRLNHLLSVAP-------QNSIILLEDIDAAFVT 221 (244)
Q Consensus 157 i~l~Gp~GsGKTtl~~~la~~~~~~-~g~i~~~~~~~~~~~~~~~~~~~~-------q~~~lf~deid~~~~~ 221 (244)
+.|+||||||||||+|.|+.-...+ ...|.++...-....+|..|..+. ...+||+|||..+-..
T Consensus 165 mIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNks 237 (554)
T KOG2028|consen 165 MILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKS 237 (554)
T ss_pred eEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhh
Confidence 7899999999999999999876654 335666654444556777665543 4589999999877543
No 428
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.51 E-value=2.6e-08 Score=93.79 Aligned_cols=72 Identities=18% Similarity=0.266 Sum_probs=58.8
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHH
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDR 196 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~ 196 (244)
++++++.+.|+. ..+++++ ++.+..|+.++|+||||||||||+++|+|...++.|.+.+++. .
T Consensus 323 l~~~~l~~~~~~-~~~l~~i-----------sl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~-~---- 385 (552)
T TIGR03719 323 IEAENLSKGFGD-KLLIDDL-----------SFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGET-V---- 385 (552)
T ss_pred EEEeeEEEEECC-eeeeccc-----------eEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCc-e----
Confidence 667888887754 3577888 8888888889999999999999999999999999999988431 1
Q ss_pred HHHHhhhcCCCC
Q psy1371 197 LNHLLSVAPQNS 208 (244)
Q Consensus 197 ~~~~~~~~~q~~ 208 (244)
.+++++|+.
T Consensus 386 ---~i~~v~q~~ 394 (552)
T TIGR03719 386 ---KLAYVDQSR 394 (552)
T ss_pred ---EEEEEeCCc
Confidence 477888764
No 429
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.51 E-value=2.6e-08 Score=92.62 Aligned_cols=63 Identities=25% Similarity=0.297 Sum_probs=54.2
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE 189 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~ 189 (244)
.+.++++.+.|+..+.+++++ ++.+..+..++|+||||+|||||+|.|+|...+..|.+....
T Consensus 321 vl~~~~~~~~y~~~~~l~~~~-----------s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~ 383 (530)
T COG0488 321 VLEFENVSKGYDGGRLLLKDL-----------SFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE 383 (530)
T ss_pred eEEEeccccccCCCceeecCc-----------eEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC
Confidence 356889999886555678888 889999999999999999999999999999998888887544
No 430
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.51 E-value=2.2e-08 Score=95.83 Aligned_cols=71 Identities=18% Similarity=0.332 Sum_probs=56.9
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHH
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDR 196 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~ 196 (244)
+.++++.+.|+. ..+++++ ++.+..|..++|+||||||||||+++|+|.+.|+.|.+.++ ...
T Consensus 320 l~~~~l~~~~~~-~~il~~v-----------sl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~-~~~---- 382 (635)
T PRK11147 320 FEMENVNYQIDG-KQLVKDF-----------SAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCG-TKL---- 382 (635)
T ss_pred EEEeeeEEEECC-eEEEcCc-----------EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEC-CCc----
Confidence 567888887754 3477888 78888888899999999999999999999999999999873 221
Q ss_pred HHHHhhhcCCC
Q psy1371 197 LNHLLSVAPQN 207 (244)
Q Consensus 197 ~~~~~~~~~q~ 207 (244)
.+++++|.
T Consensus 383 ---~i~y~~q~ 390 (635)
T PRK11147 383 ---EVAYFDQH 390 (635)
T ss_pred ---EEEEEeCc
Confidence 36667764
No 431
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=1.7e-07 Score=88.39 Aligned_cols=97 Identities=20% Similarity=0.336 Sum_probs=62.0
Q ss_pred CCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCe--------
Q psy1371 111 GHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGI-------- 182 (244)
Q Consensus 111 ~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~-------- 182 (244)
..+++|.+|++|.++....+.+.+.+ .. + ..+..++|+||+|+||||+++++|+.+....
T Consensus 6 arKyRPktFddVIGQe~vv~~L~~aI----~~-------g-rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg 73 (702)
T PRK14960 6 ARKYRPRNFNELVGQNHVSRALSSAL----ER-------G-RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCE 73 (702)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHH----Hc-------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCc
Confidence 45677889999998876655554444 21 1 1234579999999999999999998875421
Q ss_pred --------------EEEEeCCC-CCCHHHHHHHhhhc---C---CCCceehhhHhhhh
Q psy1371 183 --------------CVLNLSER-GLTDDRLNHLLSVA---P---QNSIILLEDIDAAF 219 (244)
Q Consensus 183 --------------g~i~~~~~-~~~~~~~~~~~~~~---~---q~~~lf~deid~~~ 219 (244)
-.+.++.. ....+.+|+.+..+ + ...++++||+|.+.
T Consensus 74 ~C~sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS 131 (702)
T PRK14960 74 VCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS 131 (702)
T ss_pred cCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC
Confidence 11222221 12334566655544 2 23588899999874
No 432
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.50 E-value=2.5e-08 Score=93.96 Aligned_cols=72 Identities=18% Similarity=0.276 Sum_probs=59.0
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHH
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDR 196 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~ 196 (244)
++++++.+.|+.+ .+++++ ++.+..|+.++|+||||||||||+++|+|...++.|.+.+++. .
T Consensus 325 l~~~~l~~~~~~~-~~l~~i-----------sl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-~---- 387 (556)
T PRK11819 325 IEAENLSKSFGDR-LLIDDL-----------SFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGET-V---- 387 (556)
T ss_pred EEEEeEEEEECCe-eeecce-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-e----
Confidence 6678888877543 477888 8888888889999999999999999999999999999988431 1
Q ss_pred HHHHhhhcCCCC
Q psy1371 197 LNHLLSVAPQNS 208 (244)
Q Consensus 197 ~~~~~~~~~q~~ 208 (244)
.+++++|+.
T Consensus 388 ---~i~~v~q~~ 396 (556)
T PRK11819 388 ---KLAYVDQSR 396 (556)
T ss_pred ---EEEEEeCch
Confidence 377888764
No 433
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.50 E-value=2.8e-08 Score=92.44 Aligned_cols=61 Identities=26% Similarity=0.323 Sum_probs=52.3
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE 189 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~ 189 (244)
+.++++++.++. +.+++++ ++.+.++..++|+|+||+|||||+|+|+|...++.|.|....
T Consensus 4 i~~~~ls~~~g~-~~l~~~~-----------~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~ 64 (530)
T COG0488 4 ITLENLSLAYGD-RPLLENV-----------SLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK 64 (530)
T ss_pred EEEeeeEEeeCC-ceeecCC-----------cceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecC
Confidence 456777777754 4678888 888888888999999999999999999999999999988764
No 434
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.50 E-value=6.3e-08 Score=78.08 Aligned_cols=87 Identities=18% Similarity=0.295 Sum_probs=63.5
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC-CCC---CH
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE-RGL---TD 194 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~-~~~---~~ 194 (244)
+++|+.+.++-. .++++ ++.+.++.--.++||||+||||++.+|+|..+|+.|++.+.+ .++ ++
T Consensus 8 ~~~vsVsF~GF~-Aln~l-----------s~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e 75 (249)
T COG4674 8 LDGVSVSFGGFK-ALNDL-----------SFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPE 75 (249)
T ss_pred EeceEEEEccee-eeeee-----------EEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCH
Confidence 455555554432 45777 666666666799999999999999999999999999999988 433 34
Q ss_pred HHH-HHHhhhcCCCCcee-----hhhHhh
Q psy1371 195 DRL-NHLLSVAPQNSIIL-----LEDIDA 217 (244)
Q Consensus 195 ~~~-~~~~~~~~q~~~lf-----~deid~ 217 (244)
..+ |.-++.-+|.+-+| .|++|.
T Consensus 76 ~~IAr~GIGRKFQ~PtVfe~ltV~eNLel 104 (249)
T COG4674 76 HRIARAGIGRKFQKPTVFENLTVRENLEL 104 (249)
T ss_pred HHHHHhccCccccCCeehhhccHHHHHHH
Confidence 343 44577778877777 566654
No 435
>PRK13409 putative ATPase RIL; Provisional
Probab=98.49 E-value=2.8e-08 Score=94.12 Aligned_cols=36 Identities=25% Similarity=0.304 Sum_probs=32.5
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEE
Q psy1371 151 IPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLN 186 (244)
Q Consensus 151 ~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~ 186 (244)
+.+|+-++|+||||+|||||+++|+|++.|+.|.+.
T Consensus 96 i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~ 131 (590)
T PRK13409 96 PKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYE 131 (590)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccCCCcccc
Confidence 445556899999999999999999999999999997
No 436
>PRK13409 putative ATPase RIL; Provisional
Probab=98.47 E-value=4.7e-08 Score=92.59 Aligned_cols=51 Identities=27% Similarity=0.266 Sum_probs=41.9
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHhhhcCCCC
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRLNHLLSVAPQNS 208 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~q~~ 208 (244)
++.+..++-++|+||||+|||||+++|+|++.|+.|.+.++ ..+++++|..
T Consensus 359 s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~----------~~i~y~~Q~~ 409 (590)
T PRK13409 359 GGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE----------LKISYKPQYI 409 (590)
T ss_pred ceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe----------eeEEEecccc
Confidence 55667777799999999999999999999999999998864 1356677653
No 437
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=3e-07 Score=86.69 Aligned_cols=58 Identities=22% Similarity=0.361 Sum_probs=42.4
Q ss_pred CCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 111 GHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 111 ~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
.+++++.+|++|+++....+.+.+.+ ..+++ +..++|+||+|+||||+++++++.+..
T Consensus 7 arKYRPqtFddVIGQe~vv~~L~~al----~~gRL--------pHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 7 ARKWRPRDFTTLVGQEHVVRALTHAL----EQQRL--------HHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred HHHhCCCcHHHHcCcHHHHHHHHHHH----HhCCC--------ceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45678889999998876655443333 22221 234799999999999999999998765
No 438
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.44 E-value=2.9e-07 Score=85.00 Aligned_cols=102 Identities=19% Similarity=0.212 Sum_probs=73.0
Q ss_pred HHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCC----eEEEEeCCC---CCCHHHHH----H
Q psy1371 131 RILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFG----ICVLNLSER---GLTDDRLN----H 199 (244)
Q Consensus 131 ~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~----~g~i~~~~~---~~~~~~~~----~ 199 (244)
.+++++ +|.+.+|+.++|+|.|||||||++++|.|+++.+ .|.+.+++. +.++..++ +
T Consensus 23 ~~v~~v-----------sf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~ 91 (539)
T COG1123 23 PAVRDV-----------SFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGK 91 (539)
T ss_pred eeeecc-----------eEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccc
Confidence 467888 8888888889999999999999999999999887 699988885 33443332 5
Q ss_pred HhhhcCCCCcee-------hhhHhhhhcccC-cCcccHHHHHHHHHHhhhcC
Q psy1371 200 LLSVAPQNSIIL-------LEDIDAAFVTRE-ESSQGLEDIDAAFVTREESS 243 (244)
Q Consensus 200 ~~~~~~q~~~lf-------~deid~~~~~r~-~~~~~~~~~~~~~l~~~~~~ 243 (244)
.+++++|++.=- -+-|......+. .+.++.++..-++|+++++.
T Consensus 92 ~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~ 143 (539)
T COG1123 92 RIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLP 143 (539)
T ss_pred cEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCC
Confidence 588889864322 333433332222 33556667777888888775
No 439
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=5.2e-07 Score=81.40 Aligned_cols=99 Identities=22% Similarity=0.327 Sum_probs=61.4
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC------------------
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF------------------ 180 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~------------------ 180 (244)
|++|..+...++.+.+.+..... .+..++...+..++|+||+|+|||++++.+++.+..
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~---~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARA---DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccc---cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 67777666555544444422111 122334445667999999999999999999875533
Q ss_pred -----CeEEEEeCCCCCCHHHHHHHhhhcCC------CCceehhhHhhhhc
Q psy1371 181 -----GICVLNLSERGLTDDRLNHLLSVAPQ------NSIILLEDIDAAFV 220 (244)
Q Consensus 181 -----~~g~i~~~~~~~~~~~~~~~~~~~~q------~~~lf~deid~~~~ 220 (244)
+...+..++....-..+|+.+..+.. ..++++||+|.+..
T Consensus 81 ~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~ 131 (394)
T PRK07940 81 AGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE 131 (394)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH
Confidence 23334444444555567766655432 24889999998843
No 440
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.43 E-value=4.6e-07 Score=84.05 Aligned_cols=62 Identities=21% Similarity=0.315 Sum_probs=43.9
Q ss_pred eeecCCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 107 WRPFGHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 107 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
+..+..+++|.+|+++..+......+...+ ..+ ..+..++|+||+|+||||+++++++.+..
T Consensus 8 y~~la~kyRP~~f~dliGq~~vv~~L~~ai----~~~--------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 8 YIPFARKYRPSNFAELQGQEVLVKVLSYTI----LND--------RLAGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred ccchhhhhCCCCHHHhcCcHHHHHHHHHHH----HcC--------CCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 444567788999999988776544332222 211 12345899999999999999999988754
No 441
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.43 E-value=2e-07 Score=74.70 Aligned_cols=87 Identities=26% Similarity=0.458 Sum_probs=55.9
Q ss_pred ceEEEcCCCCChhHHHHHHhcccCC----CeEEEEeCCCCC---CHHHHHHHhhhcC------CCCceehhhHhhhhccc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGELEF----GICVLNLSERGL---TDDRLNHLLSVAP------QNSIILLEDIDAAFVTR 222 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~~~----~~g~i~~~~~~~---~~~~~~~~~~~~~------q~~~lf~deid~~~~~r 222 (244)
.++|+||+|+|||.++++|+..+.. +...++...... ....+.+..+..+ +..++|+||||......
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~~~ 84 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHPSN 84 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhccccc
Confidence 4799999999999999999999883 444555444211 0112333333332 34699999999887642
Q ss_pred CcCc-ccHHHHHHHHHHhhhc
Q psy1371 223 EESS-QGLEDIDAAFVTREES 242 (244)
Q Consensus 223 ~~~~-~~~~~~~~~~l~~~~~ 242 (244)
.... -..+.+.+.||.-+|-
T Consensus 85 ~~~~~v~~~~V~~~LL~~le~ 105 (171)
T PF07724_consen 85 SGGADVSGEGVQNSLLQLLEG 105 (171)
T ss_dssp TTCSHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHhcc
Confidence 2222 2345778888887764
No 442
>KOG1969|consensus
Probab=98.43 E-value=6.6e-07 Score=84.25 Aligned_cols=107 Identities=21% Similarity=0.363 Sum_probs=71.6
Q ss_pred cCCCCCCCCCCccccChhHHHHHHHHHHHHh----c-------------Chhhhh----hCCCCCCcceEEEcCCCCChh
Q psy1371 110 FGHPKRRRPLNSVVLDSGVADRILTDIKQFV----A-------------DPAWYL----DRGIPYRRGYLLYGPPGCGKS 168 (244)
Q Consensus 110 ~~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~----~-------------~~~~~~----~~~~~~~~gi~l~Gp~GsGKT 168 (244)
|.+++++..|.++-.++.....++.+++.+= + ..+.++ ..+-|..+-++|+||||-|||
T Consensus 261 WVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKT 340 (877)
T KOG1969|consen 261 WVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKT 340 (877)
T ss_pred eecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChh
Confidence 4567788889998888777677888877661 1 112221 123444555889999999999
Q ss_pred HHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHhhhc----------CCCCceehhhHhh
Q psy1371 169 SFITALAGELEFGICVLNLSERGLTDDRLNHLLSVA----------PQNSIILLEDIDA 217 (244)
Q Consensus 169 tl~~~la~~~~~~~g~i~~~~~~~~~~~~~~~~~~~----------~q~~~lf~deid~ 217 (244)
||++.+|+..+....+|+.++.- +...+++.+..+ .+|.+|++||||-
T Consensus 341 TLAHViAkqaGYsVvEINASDeR-t~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 341 TLAHVIAKQAGYSVVEINASDER-TAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDG 398 (877)
T ss_pred HHHHHHHHhcCceEEEecccccc-cHHHHHHHHHHHHhhccccccCCCcceEEEecccC
Confidence 99999999998877777766521 222333332221 3578899999974
No 443
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=3.8e-07 Score=84.15 Aligned_cols=98 Identities=13% Similarity=0.209 Sum_probs=59.9
Q ss_pred CCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCC---------
Q psy1371 111 GHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFG--------- 181 (244)
Q Consensus 111 ~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~--------- 181 (244)
..+++|.+|+++.+++...+.+.+.+ .. + ..+..++|+||+|+||||+++++|+.+...
T Consensus 4 a~KyRP~~f~dliGQe~vv~~L~~a~----~~-------~-ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg 71 (491)
T PRK14964 4 ALKYRPSSFKDLVGQDVLVRILRNAF----TL-------N-KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCG 71 (491)
T ss_pred hHHhCCCCHHHhcCcHHHHHHHHHHH----Hc-------C-CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcc
Confidence 35677899999998876544432222 21 1 123468999999999999999999754211
Q ss_pred -------------eEEEEeCCC-CCCHHHHHHHhhhc---C---CCCceehhhHhhhhc
Q psy1371 182 -------------ICVLNLSER-GLTDDRLNHLLSVA---P---QNSIILLEDIDAAFV 220 (244)
Q Consensus 182 -------------~g~i~~~~~-~~~~~~~~~~~~~~---~---q~~~lf~deid~~~~ 220 (244)
.-.+.++.. ...-+.+|..+..+ | +..++++||+|.+..
T Consensus 72 ~C~~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~ 130 (491)
T PRK14964 72 TCHNCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN 130 (491)
T ss_pred ccHHHHHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH
Confidence 111233321 22334555554433 3 235788999988743
No 444
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.42 E-value=2.7e-07 Score=88.96 Aligned_cols=97 Identities=19% Similarity=0.315 Sum_probs=57.2
Q ss_pred CCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCC
Q psy1371 111 GHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSER 190 (244)
Q Consensus 111 ~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~ 190 (244)
.+..+|.+++++.++.....+ ...+...+... ....++|+||||+||||+++++++........++....
T Consensus 19 aek~RP~tldd~vGQe~ii~~-~~~L~~~i~~~---------~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~ 88 (725)
T PRK13341 19 ADRLRPRTLEEFVGQDHILGE-GRLLRRAIKAD---------RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA 88 (725)
T ss_pred HHhcCCCcHHHhcCcHHHhhh-hHHHHHHHhcC---------CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh
Confidence 455678889999877543321 01122222211 11247999999999999999999987665544433222
Q ss_pred CCCHHHHHHHhhh-------cCCCCceehhhHhhhh
Q psy1371 191 GLTDDRLNHLLSV-------APQNSIILLEDIDAAF 219 (244)
Q Consensus 191 ~~~~~~~~~~~~~-------~~q~~~lf~deid~~~ 219 (244)
+. +.+++.+.. ..+..++|+||+|.+.
T Consensus 89 ~i--~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln 122 (725)
T PRK13341 89 GV--KDLRAEVDRAKERLERHGKRTILFIDEVHRFN 122 (725)
T ss_pred hh--HHHHHHHHHHHHHhhhcCCceEEEEeChhhCC
Confidence 22 222322221 1235689999998774
No 445
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.41 E-value=1.9e-07 Score=88.56 Aligned_cols=65 Identities=23% Similarity=0.336 Sum_probs=46.4
Q ss_pred ecCCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCC
Q psy1371 109 PFGHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFG 181 (244)
Q Consensus 109 ~~~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~ 181 (244)
.|.++++|..++++.++....+.+...+ ... .++..+++.++|+|||||||||+++++++.+...
T Consensus 73 pW~eKyrP~~ldel~~~~~ki~~l~~~l----~~~----~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~ 137 (637)
T TIGR00602 73 PWVEKYKPETQHELAVHKKKIEEVETWL----KAQ----VLENAPKRILLITGPSGCGKSTTIKILSKELGIQ 137 (637)
T ss_pred chHHHhCCCCHHHhcCcHHHHHHHHHHH----Hhc----ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhH
Confidence 4567788999999998875544433332 211 2334445568999999999999999999987653
No 446
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.41 E-value=6e-07 Score=88.26 Aligned_cols=72 Identities=21% Similarity=0.399 Sum_probs=50.9
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHhcccC----------CCeEEEEeCC-------CCCCHHHHHHHhhhcC--CCCcee
Q psy1371 151 IPYRRGYLLYGPPGCGKSSFITALAGELE----------FGICVLNLSE-------RGLTDDRLNHLLSVAP--QNSIIL 211 (244)
Q Consensus 151 ~~~~~gi~l~Gp~GsGKTtl~~~la~~~~----------~~~g~i~~~~-------~~~~~~~~~~~~~~~~--q~~~lf 211 (244)
-..+.+++|+||||+|||++++.+|.... .....++... .+..+..+++.+..+. .+++||
T Consensus 197 r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILf 276 (821)
T CHL00095 197 RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILV 276 (821)
T ss_pred ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEE
Confidence 33456789999999999999999998763 2334444321 2233457788887664 367999
Q ss_pred hhhHhhhhccc
Q psy1371 212 LEDIDAAFVTR 222 (244)
Q Consensus 212 ~deid~~~~~r 222 (244)
+||++.+....
T Consensus 277 iDEih~l~~~g 287 (821)
T CHL00095 277 IDEVHTLIGAG 287 (821)
T ss_pred EecHHHHhcCC
Confidence 99999987643
No 447
>KOG0989|consensus
Probab=98.40 E-value=2.2e-07 Score=79.53 Aligned_cols=59 Identities=25% Similarity=0.425 Sum_probs=43.9
Q ss_pred ecCCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 109 PFGHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 109 ~~~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
.|.++++|+.++++.+.......+.+.+. + .-...++||||||||||+.+++.++.+.+
T Consensus 25 swteKYrPkt~de~~gQe~vV~~L~~a~~----------~---~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 25 SWTEKYRPKTFDELAGQEHVVQVLKNALL----------R---RILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred chHHHhCCCcHHhhcchHHHHHHHHHHHh----------h---cCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 35678899999999888765544444431 1 11234799999999999999999998865
No 448
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=6.1e-07 Score=80.30 Aligned_cols=97 Identities=20% Similarity=0.395 Sum_probs=61.3
Q ss_pred CCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCC---------
Q psy1371 111 GHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFG--------- 181 (244)
Q Consensus 111 ~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~--------- 181 (244)
.++++|.+|+++.++....+.+.+.+ .. + ..+..++|+||||+||||+++++++.+...
T Consensus 8 ~~k~rP~~~~~iig~~~~~~~l~~~i----~~-------~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~ 75 (367)
T PRK14970 8 ARKYRPQTFDDVVGQSHITNTLLNAI----EN-------N-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDF 75 (367)
T ss_pred HHHHCCCcHHhcCCcHHHHHHHHHHH----Hc-------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 35577889999988876555554444 22 1 223568999999999999999999876541
Q ss_pred -eEEEEeCCCC-CCHHHHHHHhhh---cC---CCCceehhhHhhhh
Q psy1371 182 -ICVLNLSERG-LTDDRLNHLLSV---AP---QNSIILLEDIDAAF 219 (244)
Q Consensus 182 -~g~i~~~~~~-~~~~~~~~~~~~---~~---q~~~lf~deid~~~ 219 (244)
...+.++..+ .....+++.+.. .| ...++++||+|.+.
T Consensus 76 ~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~ 121 (367)
T PRK14970 76 SFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS 121 (367)
T ss_pred CcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC
Confidence 1122233211 223455555543 23 23588899998764
No 449
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.37 E-value=7.3e-07 Score=79.15 Aligned_cols=58 Identities=22% Similarity=0.411 Sum_probs=41.7
Q ss_pred cCCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC
Q psy1371 110 FGHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 110 ~~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
+.++.+|.+|+++..+....+.+.+.+ ..+. .+..++|+||||+||||+++++++.+.
T Consensus 4 ~~~~~rp~~~~~iig~~~~~~~l~~~~----~~~~--------~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 4 LARKYRPQTFEDVIGQEHIVQTLKNAI----KNGR--------IAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred HHHHhCCCcHhhccCcHHHHHHHHHHH----HcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456677889999987766555544443 2211 234579999999999999999998764
No 450
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=5.9e-07 Score=81.31 Aligned_cols=58 Identities=16% Similarity=0.300 Sum_probs=42.0
Q ss_pred CCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 111 GHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 111 ~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
.+.++|.+|++|.++....+.+.+.+ ..+ ..+..++|+||+|+||||+++++|+.+..
T Consensus 7 ~~k~RP~~~~eiiGq~~~~~~L~~~~----~~~--------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 7 ARKYRPKKFADITAQEHITRTIQNSL----RMG--------RVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred HHhcCCCcHhhccChHHHHHHHHHHH----HhC--------CcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45678889999998776655443333 221 12334799999999999999999987754
No 451
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=3.9e-07 Score=85.11 Aligned_cols=58 Identities=19% Similarity=0.301 Sum_probs=41.4
Q ss_pred CCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 111 GHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 111 ~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
.++++|.+|+++.++....+.+.+.+ ..++ .+..++|+||+|+||||+++++++.+..
T Consensus 7 a~KyRP~~f~diiGq~~~v~~L~~~i----~~~r--------l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 7 ARKYRPQSFAEVAGQQHALNSLVHAL----ETQK--------VHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred HHHHCcCcHHHhcCcHHHHHHHHHHH----HcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45677889999998876555544443 2211 1234789999999999999999987653
No 452
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.36 E-value=1.2e-06 Score=86.42 Aligned_cols=68 Identities=24% Similarity=0.466 Sum_probs=47.3
Q ss_pred cceEEEcCCCCChhHHHHHHhccc----------CCCeEEEEeCC-------CCCCHHHHHHHhhhc---CCCCceehhh
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGEL----------EFGICVLNLSE-------RGLTDDRLNHLLSVA---PQNSIILLED 214 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~----------~~~~g~i~~~~-------~~~~~~~~~~~~~~~---~q~~~lf~de 214 (244)
..++|+||||+|||++++.++... +.....++++. .+..+..+++.+..+ ..+++||+||
T Consensus 200 ~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDE 279 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDE 279 (857)
T ss_pred CceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEec
Confidence 347999999999999999999876 22333333332 122345677777653 3568999999
Q ss_pred Hhhhhccc
Q psy1371 215 IDAAFVTR 222 (244)
Q Consensus 215 id~~~~~r 222 (244)
++.+...+
T Consensus 280 ih~l~~~~ 287 (857)
T PRK10865 280 LHTMVGAG 287 (857)
T ss_pred HHHhccCC
Confidence 99997543
No 453
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.36 E-value=3.6e-07 Score=82.16 Aligned_cols=80 Identities=20% Similarity=0.275 Sum_probs=53.4
Q ss_pred CCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC------CCC-CHHHHHHHhhhcCCCCceehhhHhhhhcccCcC
Q psy1371 153 YRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE------RGL-TDDRLNHLLSVAPQNSIILLEDIDAAFVTREES 225 (244)
Q Consensus 153 ~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~------~~~-~~~~~~~~~~~~~q~~~lf~deid~~~~~r~~~ 225 (244)
.+++++|+||||||||+++++|+..++.+...++... .+. .+..+++.+..+.. ++ ++|.++..|...
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~----~i-~~d~i~~~r~~a 120 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVK----LV-KEEAIEKVRDRA 120 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHHHH----HH-HHHHHhHHHHHH
Confidence 3478999999999999999999999998877776432 222 23556666665543 23 467777776443
Q ss_pred cccH-HHHHHHHH
Q psy1371 226 SQGL-EDIDAAFV 237 (244)
Q Consensus 226 ~~~~-~~~~~~~l 237 (244)
.... +++.++++
T Consensus 121 ~~~ae~riv~~Ll 133 (441)
T TIGR00390 121 EELAEERIVDVLL 133 (441)
T ss_pred HHHHHHHHHHHhc
Confidence 3332 35555554
No 454
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.35 E-value=1.2e-06 Score=86.27 Aligned_cols=68 Identities=21% Similarity=0.386 Sum_probs=47.7
Q ss_pred cceEEEcCCCCChhHHHHHHhcccC----------CCeEEEEeCC-------CCCCHHHHHHHhhhcC---CCCceehhh
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELE----------FGICVLNLSE-------RGLTDDRLNHLLSVAP---QNSIILLED 214 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~----------~~~g~i~~~~-------~~~~~~~~~~~~~~~~---q~~~lf~de 214 (244)
...+|+||||||||++++.++..+. .....++++. .+..+..+++.+..+. ++++||+||
T Consensus 209 ~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDE 288 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDE 288 (852)
T ss_pred CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeC
Confidence 3579999999999999999998652 2222333221 2223457777887664 468999999
Q ss_pred Hhhhhccc
Q psy1371 215 IDAAFVTR 222 (244)
Q Consensus 215 id~~~~~r 222 (244)
++.+...+
T Consensus 289 ih~l~~~g 296 (852)
T TIGR03345 289 AHTLIGAG 296 (852)
T ss_pred hHHhccCC
Confidence 99997644
No 455
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=1.3e-06 Score=81.17 Aligned_cols=56 Identities=23% Similarity=0.382 Sum_probs=40.3
Q ss_pred CCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC
Q psy1371 112 HPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 112 ~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
.+++|.+|++|..+....+.+.+.+ ..+ ..+..++|+||||+||||+++++++.+.
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i----~~~--------~l~ha~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAAL----RQG--------RLGHAYLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHH----HcC--------CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4577889999988776555443333 221 1123369999999999999999998774
No 456
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.34 E-value=9.8e-07 Score=66.98 Aligned_cols=66 Identities=32% Similarity=0.477 Sum_probs=42.1
Q ss_pred CCcceEEEcCCCCChhHHHHHHhccc---CCCeEEEEeCCCCCCH--H--------HHHHHhhhcCCCCceehhhHhhh
Q psy1371 153 YRRGYLLYGPPGCGKSSFITALAGEL---EFGICVLNLSERGLTD--D--------RLNHLLSVAPQNSIILLEDIDAA 218 (244)
Q Consensus 153 ~~~gi~l~Gp~GsGKTtl~~~la~~~---~~~~g~i~~~~~~~~~--~--------~~~~~~~~~~q~~~lf~deid~~ 218 (244)
.++.++++||||+|||++++.+++.+ ..+...+......... . ..........+..++++||++.+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~ 96 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSL 96 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhh
Confidence 34568999999999999999999987 4444444433311111 0 01112223345688999999876
No 457
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.34 E-value=4.6e-07 Score=86.08 Aligned_cols=97 Identities=19% Similarity=0.342 Sum_probs=61.6
Q ss_pred CCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeE-------
Q psy1371 111 GHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGIC------- 183 (244)
Q Consensus 111 ~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g------- 183 (244)
..++++.+|++++++....+.+.+.+ ..+ ..+..++|+||+|+||||+++++++.+....+
T Consensus 7 arKYRP~tFddIIGQe~vv~~L~~ai----~~~--------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg 74 (709)
T PRK08691 7 ARKWRPKTFADLVGQEHVVKALQNAL----DEG--------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCG 74 (709)
T ss_pred HHHhCCCCHHHHcCcHHHHHHHHHHH----HcC--------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCc
Confidence 45678899999998876655443333 221 22355899999999999999999997654211
Q ss_pred ---------------EEEeCC-CCCCHHHHHHHhhhc---C---CCCceehhhHhhhh
Q psy1371 184 ---------------VLNLSE-RGLTDDRLNHLLSVA---P---QNSIILLEDIDAAF 219 (244)
Q Consensus 184 ---------------~i~~~~-~~~~~~~~~~~~~~~---~---q~~~lf~deid~~~ 219 (244)
.+.++. .....+.+|+.+..+ + ...++++||+|.+.
T Consensus 75 ~C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls 132 (709)
T PRK08691 75 VCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS 132 (709)
T ss_pred ccHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC
Confidence 122222 122334566665533 2 23688899998763
No 458
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=1.2e-06 Score=82.64 Aligned_cols=59 Identities=19% Similarity=0.260 Sum_probs=41.7
Q ss_pred cCCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 110 FGHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 110 ~~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
+..++++.+|++|..+...++.+.+.+ ..+. ....++|+||+|+||||+++++++.+..
T Consensus 6 la~KyRP~sf~dIiGQe~v~~~L~~ai----~~~r--------i~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 6 LTARYRPQTFAEVAGQETVKAILSRAA----QENR--------VAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HHHHhCCCCHHHhcCCHHHHHHHHHHH----HcCC--------CCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 345678899999987765544443333 2211 1235799999999999999999988754
No 459
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.34 E-value=6.3e-07 Score=78.87 Aligned_cols=58 Identities=29% Similarity=0.402 Sum_probs=40.4
Q ss_pred cCCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 110 FGHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 110 ~~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
|.++++|.+|+++..+....+.+ ...+.. + ....++|+||||+||||+++++++.+..
T Consensus 5 w~~ky~P~~~~~~~g~~~~~~~L----~~~~~~-------~--~~~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 5 WTEKYRPALLEDILGQDEVVERL----SRAVDS-------P--NLPHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred hHHhhCCCcHHHhcCCHHHHHHH----HHHHhC-------C--CCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45667888999998765544443 333322 1 1125899999999999999999987753
No 460
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.34 E-value=5.2e-07 Score=74.94 Aligned_cols=92 Identities=22% Similarity=0.271 Sum_probs=52.5
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCC-eEEEEeCCCCCCHH
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFG-ICVLNLSERGLTDD 195 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~-~g~i~~~~~~~~~~ 195 (244)
.+|++..- +..+.+++.+..... ...+..++|+||+|||||+++++++...... .-.+.++......
T Consensus 12 ~~~~~~~~--~~~~~~~~~l~~~~~---------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~- 79 (226)
T TIGR03420 12 PTFDNFYA--GGNAELLAALRQLAA---------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ- 79 (226)
T ss_pred hhhcCcCc--CCcHHHHHHHHHHHh---------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHH-
Confidence 45666652 223445555544322 1234568999999999999999999876421 1122222211111
Q ss_pred HHHHHhhhcCCCCceehhhHhhhhc
Q psy1371 196 RLNHLLSVAPQNSIILLEDIDAAFV 220 (244)
Q Consensus 196 ~~~~~~~~~~q~~~lf~deid~~~~ 220 (244)
.....+.......++++||+|.+..
T Consensus 80 ~~~~~~~~~~~~~lLvIDdi~~l~~ 104 (226)
T TIGR03420 80 ADPEVLEGLEQADLVCLDDVEAIAG 104 (226)
T ss_pred hHHHHHhhcccCCEEEEeChhhhcC
Confidence 1123344444556899999998743
No 461
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.33 E-value=8.4e-07 Score=82.57 Aligned_cols=67 Identities=24% Similarity=0.446 Sum_probs=46.5
Q ss_pred cCCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEE
Q psy1371 110 FGHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICV 184 (244)
Q Consensus 110 ~~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~ 184 (244)
|.+.+.|.+.+++..+....+++.+.+...+ .+-...+-++|.|||||||||++++||.++++...+
T Consensus 9 W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~--------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 9 WVEKYAPKTLDELAVHKKKVEEVRSWLEEMF--------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred cchhcCCCCHHHhhccHHHHHHHHHHHHHHh--------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 4677888999999988654444444443221 122233457889999999999999999998765433
No 462
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.32 E-value=5.4e-07 Score=85.57 Aligned_cols=98 Identities=17% Similarity=0.266 Sum_probs=60.7
Q ss_pred CCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeE-------
Q psy1371 111 GHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGIC------- 183 (244)
Q Consensus 111 ~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g------- 183 (244)
..+++|.+|++|+++....+.+.+.+ ..+. .+..++|+||+|+||||+++++++.+....+
T Consensus 7 a~KyRP~~f~divGQe~vv~~L~~~l----~~~r--------l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg 74 (647)
T PRK07994 7 ARKWRPQTFAEVVGQEHVLTALANAL----DLGR--------LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCG 74 (647)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHH----HcCC--------CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCC
Confidence 35567889999998876555443333 2222 2233699999999999999999988765211
Q ss_pred ---------------EEEeCCC-CCCHHHHHHHhhhc---C---CCCceehhhHhhhhc
Q psy1371 184 ---------------VLNLSER-GLTDDRLNHLLSVA---P---QNSIILLEDIDAAFV 220 (244)
Q Consensus 184 ---------------~i~~~~~-~~~~~~~~~~~~~~---~---q~~~lf~deid~~~~ 220 (244)
.+.++.. ....+.+|+....+ + ...++++||+|.+..
T Consensus 75 ~C~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~ 133 (647)
T PRK07994 75 ECDNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR 133 (647)
T ss_pred CCHHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH
Confidence 1222322 12334455544333 2 235888999998753
No 463
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.31 E-value=5e-07 Score=71.79 Aligned_cols=96 Identities=13% Similarity=0.150 Sum_probs=60.2
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCC--------CCCHHH----HHHHhhhcCCCCce-----
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSER--------GLTDDR----LNHLLSVAPQNSII----- 210 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~--------~~~~~~----~~~~~~~~~q~~~l----- 210 (244)
+|.+-+++-++++|.+|+|||||+++|++.+.|+.|.+..... ..++.. +|.-.+++.|++.=
T Consensus 26 sF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~ 105 (258)
T COG4107 26 SFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQ 105 (258)
T ss_pred ceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceee
Confidence 6666677778999999999999999999999999999887441 112222 34456777776420
Q ss_pred --ehhhH-hhhhcccCcCcccHHHHHHHHHHhhhcC
Q psy1371 211 --LLEDI-DAAFVTREESSQGLEDIDAAFVTREESS 243 (244)
Q Consensus 211 --f~dei-d~~~~~r~~~~~~~~~~~~~~l~~~~~~ 243 (244)
--.+| +.+...-..--..+++....+|++++|.
T Consensus 106 VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~ 141 (258)
T COG4107 106 VSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEID 141 (258)
T ss_pred eccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccC
Confidence 01122 1111110001113556677788888774
No 464
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.31 E-value=8.7e-07 Score=83.24 Aligned_cols=58 Identities=19% Similarity=0.358 Sum_probs=42.2
Q ss_pred cCCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC
Q psy1371 110 FGHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 110 ~~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
|.+.++|.+|+++.++....+.+.+.+ .-+ ..+..++|+||+|+||||+++++|+.+.
T Consensus 6 ~~~KyRP~~F~dIIGQe~iv~~L~~aI-----------~~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 6 FYRKYRPHNFKQIIGQELIKKILVNAI-----------LNN-KLTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHH-----------HcC-CCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 345678899999998876655444433 111 2235589999999999999999998764
No 465
>PLN03073 ABC transporter F family; Provisional
Probab=98.30 E-value=1.1e-07 Score=91.99 Aligned_cols=61 Identities=20% Similarity=0.332 Sum_probs=49.2
Q ss_pred CCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhccc---CCCeEEEEe
Q psy1371 115 RRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGEL---EFGICVLNL 187 (244)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~---~~~~g~i~~ 187 (244)
..+.++++++.|+.+ .+++++ ++.++.|+.++|+||||||||||+|+|+|.. .|+.|.+..
T Consensus 176 ~~I~i~nls~~y~~~-~ll~~i-----------sl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~ 239 (718)
T PLN03073 176 KDIHMENFSISVGGR-DLIVDA-----------SVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILH 239 (718)
T ss_pred eeEEEceEEEEeCCC-EEEECC-----------EEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEE
Confidence 347788999888653 478888 8888888889999999999999999999864 345566653
No 466
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=1.7e-06 Score=81.57 Aligned_cols=57 Identities=28% Similarity=0.443 Sum_probs=41.0
Q ss_pred CCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 112 HPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 112 ~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
.+++|.+|+++.++....+.+.+.+ ..+. .+..++|+||+|+||||+++++++.+..
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i----~~~r--------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSAL----DAGR--------INHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHH----HcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4577889999998876555544333 2211 2223699999999999999999987653
No 467
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=9.2e-07 Score=83.62 Aligned_cols=57 Identities=21% Similarity=0.297 Sum_probs=41.8
Q ss_pred CCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 112 HPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 112 ~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
.+++|.+|+++.++....+.+.+.+ ..+ ..+..++|+||+|+||||+++++++.+..
T Consensus 8 ~k~RP~~f~~iiGq~~v~~~L~~~i----~~~--------~~~hayLf~Gp~G~GKtt~A~~lak~l~c 64 (576)
T PRK14965 8 RKYRPQTFSDLTGQEHVSRTLQNAI----DTG--------RVAHAFLFTGARGVGKTSTARILAKALNC 64 (576)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHH----HcC--------CCCeEEEEECCCCCCHHHHHHHHHHhhcC
Confidence 4567889999998876655554444 221 12345799999999999999999988754
No 468
>KOG0064|consensus
Probab=98.30 E-value=3.9e-07 Score=83.13 Aligned_cols=64 Identities=27% Similarity=0.337 Sum_probs=48.4
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHhhhcCCCC----------ceehhhHhh
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRLNHLLSVAPQNS----------IILLEDIDA 217 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~q~~----------~lf~deid~ 217 (244)
.+.+.+|..++|.||||||||+|.|.|+|+.+...|.+...... .+-++||.+ +++-|.+|.
T Consensus 502 tf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~--------~mFYIPQRPYms~gtlRDQIIYPdS~e~ 573 (728)
T KOG0064|consen 502 TFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPN--------NIFYIPQRPYMSGGTLRDQIIYPDSSEQ 573 (728)
T ss_pred eEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCc--------ceEeccCCCccCcCcccceeecCCcHHH
Confidence 67788888899999999999999999999999887877765421 145666643 556666655
Q ss_pred hh
Q psy1371 218 AF 219 (244)
Q Consensus 218 ~~ 219 (244)
+.
T Consensus 574 ~~ 575 (728)
T KOG0064|consen 574 MK 575 (728)
T ss_pred HH
Confidence 54
No 469
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.29 E-value=1.1e-06 Score=85.85 Aligned_cols=57 Identities=28% Similarity=0.450 Sum_probs=42.0
Q ss_pred CCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 112 HPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 112 ~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
.++++.+|++|+++....+.+.+.+ ..+. .+..++|+||+||||||+++++++.+.+
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i----~~~r--------i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C 63 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTAL----DSGR--------INHAYLFSGPRGCGKTSSARILARSLNC 63 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHH----HhCC--------CCceEEEECCCCCCHHHHHHHHHHHhCc
Confidence 5677889999998876655554444 2211 1234799999999999999999998864
No 470
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=8.5e-07 Score=83.96 Aligned_cols=58 Identities=22% Similarity=0.365 Sum_probs=40.6
Q ss_pred CCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 111 GHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 111 ~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
.+++++.+|+++.++....+.+ ...+..+.+ +..++|+||+|+||||+++++++.+..
T Consensus 7 a~KyRP~~f~dviGQe~vv~~L----~~~l~~~rl--------~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 7 ARKYRPRSFSEMVGQEHVVQAL----TNALTQQRL--------HHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred HHHHCCCCHHHhcCcHHHHHHH----HHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4567788999999766544333 333332221 234699999999999999999987753
No 471
>KOG0745|consensus
Probab=98.29 E-value=2.2e-06 Score=76.67 Aligned_cols=87 Identities=25% Similarity=0.393 Sum_probs=59.2
Q ss_pred cceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC------CCCC-HHHHHHHhhhcC------CCCceehhhHhhhhcc
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE------RGLT-DDRLNHLLSVAP------QNSIILLEDIDAAFVT 221 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~------~~~~-~~~~~~~~~~~~------q~~~lf~deid~~~~~ 221 (244)
..++++||+|+|||.|++.||+.++.++...+... .++. +.-+.+++..+. |..|+|+||+|.+...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 45899999999999999999999998876655432 2322 234555555443 7789999999999844
Q ss_pred cCcC----cccHHHHHHHHHHhhh
Q psy1371 222 REES----SQGLEDIDAAFVTREE 241 (244)
Q Consensus 222 r~~~----~~~~~~~~~~~l~~~~ 241 (244)
.... .-+.+-+..++|..++
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllE 330 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLE 330 (564)
T ss_pred CccccccccccchhHHHHHHHHhc
Confidence 3221 1123455666666654
No 472
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=9.8e-07 Score=82.57 Aligned_cols=97 Identities=18% Similarity=0.338 Sum_probs=59.7
Q ss_pred CCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeE-------
Q psy1371 111 GHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGIC------- 183 (244)
Q Consensus 111 ~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g------- 183 (244)
..+++|.+|+++.++....+.+.+.+ ..+. .+..++|+||+|+||||++++++..+....+
T Consensus 7 ~~k~rP~~f~divGq~~v~~~L~~~i----~~~~--------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg 74 (527)
T PRK14969 7 ARKWRPKSFSELVGQEHVVRALTNAL----EQQR--------LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCG 74 (527)
T ss_pred HHHhCCCcHHHhcCcHHHHHHHHHHH----HcCC--------CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 34567789999988776554443333 2211 2234799999999999999999987754211
Q ss_pred ---------------EEEeCCC-CCCHHHHHHHhhhc---C---CCCceehhhHhhhh
Q psy1371 184 ---------------VLNLSER-GLTDDRLNHLLSVA---P---QNSIILLEDIDAAF 219 (244)
Q Consensus 184 ---------------~i~~~~~-~~~~~~~~~~~~~~---~---q~~~lf~deid~~~ 219 (244)
.+.++.. ....+.+|+.+..+ + ...++++||+|.+.
T Consensus 75 ~C~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls 132 (527)
T PRK14969 75 VCSACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS 132 (527)
T ss_pred CCHHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC
Confidence 1112211 22334566555444 2 23588899998774
No 473
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.28 E-value=9.2e-07 Score=80.59 Aligned_cols=42 Identities=21% Similarity=0.350 Sum_probs=35.5
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeE-EEEeCCCC
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGIC-VLNLSERG 191 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g-~i~~~~~~ 191 (244)
++.++.|+-++|+||||||||||++ ++...++.| .+.+++..
T Consensus 26 sl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~ 68 (504)
T TIGR03238 26 NKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATH 68 (504)
T ss_pred ceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEE
Confidence 6777788889999999999999999 677777777 79988843
No 474
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.27 E-value=3.2e-07 Score=73.84 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=25.9
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHh
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALA 175 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la 175 (244)
++.+++++.++|.||||||||||++++.
T Consensus 15 sl~i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 15 DVSIPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 7788888889999999999999999996
No 475
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.27 E-value=1.1e-06 Score=75.48 Aligned_cols=53 Identities=28% Similarity=0.506 Sum_probs=41.1
Q ss_pred cceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC----HHHHHHHhhhcCCC
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT----DDRLNHLLSVAPQN 207 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~----~~~~~~~~~~~~q~ 207 (244)
++++++|||||||||+++++++.+.+..|.+.+++..+. ...+...+..++|.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~ 168 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQH 168 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccc
Confidence 568999999999999999999999999999999885442 23344445555553
No 476
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=1.4e-06 Score=82.69 Aligned_cols=57 Identities=26% Similarity=0.360 Sum_probs=41.8
Q ss_pred CCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC
Q psy1371 111 GHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 111 ~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
.+++++.+|+++.++...++.+.+.+ ..+ ..+..++|+||+|+||||+++++++.+.
T Consensus 7 ~~kyRP~~~~eiiGq~~~~~~L~~~i----~~~--------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 7 YRKWRSQTFAELVGQEHVVQTLRNAI----AEG--------RVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHH----HhC--------CCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35678889999998877665554444 211 1233479999999999999999998764
No 477
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.26 E-value=1.8e-06 Score=72.33 Aligned_cols=92 Identities=24% Similarity=0.343 Sum_probs=62.3
Q ss_pred CCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCe-EEEEeCCCCCC
Q psy1371 115 RRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGI-CVLNLSERGLT 193 (244)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~-g~i~~~~~~~~ 193 (244)
.++.++++..-+..++.++++...++.. . +...++|+|+.|||||+++|++...+.... -.|.+...++.
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G--------~-pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~ 92 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFLQG--------L-PANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG 92 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHcC--------C-CCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc
Confidence 4577888877777788888988776543 2 234589999999999999999999886543 33444432221
Q ss_pred -HHHHHHHhhhcCCCCceehhhH
Q psy1371 194 -DDRLNHLLSVAPQNSIILLEDI 215 (244)
Q Consensus 194 -~~~~~~~~~~~~q~~~lf~dei 215 (244)
-..+-+.+..-+..-++|+|++
T Consensus 93 ~l~~l~~~l~~~~~kFIlf~DDL 115 (249)
T PF05673_consen 93 DLPELLDLLRDRPYKFILFCDDL 115 (249)
T ss_pred cHHHHHHHHhcCCCCEEEEecCC
Confidence 1233344444556678888875
No 478
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.26 E-value=5.1e-07 Score=80.12 Aligned_cols=60 Identities=18% Similarity=0.182 Sum_probs=50.3
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---H---HHHHHHhhhcCCCC
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT---D---DRLNHLLSVAPQNS 208 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~---~---~~~~~~~~~~~q~~ 208 (244)
++.+..+++++++|.|||||||+.++|.+++... |.|.+.|.++. . ..+|+.+..|+|++
T Consensus 307 sl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDP 372 (534)
T COG4172 307 SLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDP 372 (534)
T ss_pred eeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCC
Confidence 5667788889999999999999999999999877 99999885543 2 34788889999864
No 479
>PRK06893 DNA replication initiation factor; Validated
Probab=98.25 E-value=4.8e-07 Score=75.82 Aligned_cols=62 Identities=19% Similarity=0.277 Sum_probs=40.3
Q ss_pred ceEEEcCCCCChhHHHHHHhcccC---CCeEEEEeCCCCCCHHHHHHHhhhcCCCCceehhhHhhhhc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGELE---FGICVLNLSERGLTDDRLNHLLSVAPQNSIILLEDIDAAFV 220 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~~---~~~g~i~~~~~~~~~~~~~~~~~~~~q~~~lf~deid~~~~ 220 (244)
.+.|+||||||||+|++++++.+. .....+..+.... ...+.+....+..++++||++.+..
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~---~~~~~~~~~~~~dlLilDDi~~~~~ 105 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY---FSPAVLENLEQQDLVCLDDLQAVIG 105 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhh---hhHHHHhhcccCCEEEEeChhhhcC
Confidence 468999999999999999998752 2333333332111 1123333444567899999998753
No 480
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.25 E-value=2.3e-06 Score=74.69 Aligned_cols=57 Identities=32% Similarity=0.530 Sum_probs=40.3
Q ss_pred cCCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC
Q psy1371 110 FGHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 110 ~~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
|.++++|.+|+++..+....+.+. ..+..+ .. ..++|+||||+||||+++++++.+.
T Consensus 7 w~~kyrP~~~~~~~g~~~~~~~l~----~~i~~~------~~---~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 7 WVEKYRPRTLDEIVGQEEIVERLK----SYVKEK------NM---PHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred cchhhCCCcHHHhcCcHHHHHHHH----HHHhCC------CC---CeEEEECCCCCCHHHHHHHHHHHHc
Confidence 467788899999886665444443 333221 11 2379999999999999999998764
No 481
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=2.9e-06 Score=78.02 Aligned_cols=57 Identities=18% Similarity=0.283 Sum_probs=41.0
Q ss_pred CCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC
Q psy1371 111 GHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 111 ~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
.+.++|.+|+++.++....+.+.+.+ ..+. .+..++|+||+|+||||+++++++.+.
T Consensus 8 ~~kyRP~~~~diiGq~~~v~~L~~~i----~~~~--------i~ha~Lf~Gp~G~GKtt~A~~lAk~l~ 64 (451)
T PRK06305 8 SRKYRPQTFSEILGQDAVVAVLKNAL----RFNR--------AAHAYLFSGIRGTGKTTLARIFAKALN 64 (451)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHH----HcCC--------CceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34567889999998876555444444 2221 234479999999999999999998764
No 482
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.23 E-value=1.2e-06 Score=73.80 Aligned_cols=63 Identities=19% Similarity=0.239 Sum_probs=38.3
Q ss_pred cceEEEcCCCCChhHHHHHHhcccCCC---eEEEEeCCCCCCHHHHHHHhhhcCCCCceehhhHhhhhc
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELEFG---ICVLNLSERGLTDDRLNHLLSVAPQNSIILLEDIDAAFV 220 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~~~---~g~i~~~~~~~~~~~~~~~~~~~~q~~~lf~deid~~~~ 220 (244)
..+.|+||+|||||+|+++++...... ...+..+........+.+. ..+-.++++||++.+..
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~---~~~~dlliiDdi~~~~~ 111 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWFVPEVLEG---MEQLSLVCIDNIECIAG 111 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhhhHHHHHH---hhhCCEEEEeChhhhcC
Confidence 458999999999999999999765422 2333333211111122222 22335788999988753
No 483
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.23 E-value=8.1e-07 Score=72.03 Aligned_cols=40 Identities=20% Similarity=0.421 Sum_probs=33.7
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC
Q psy1371 150 GIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE 189 (244)
Q Consensus 150 ~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~ 189 (244)
.+..++.+++.||+||||||++++|+++++++.+.+.+.+
T Consensus 21 ~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied 60 (186)
T cd01130 21 AVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIED 60 (186)
T ss_pred HHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECC
Confidence 3445666899999999999999999999988877777755
No 484
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=2e-06 Score=79.71 Aligned_cols=58 Identities=22% Similarity=0.342 Sum_probs=41.6
Q ss_pred cCCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC
Q psy1371 110 FGHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 110 ~~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
|...++|..|+++.++......+.+.+ ..+. .+..++|+||+|+||||++++++..+.
T Consensus 6 ~~~kyRP~~f~diiGq~~i~~~L~~~i----~~~~--------i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 6 FARKYRPKFFKEVIGQEIVVRILKNAV----KLQR--------VSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred HHHhhCCCcHHHccChHHHHHHHHHHH----HcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 455677889999987776555554444 2211 223478999999999999999998765
No 485
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.22 E-value=2.1e-06 Score=82.22 Aligned_cols=59 Identities=22% Similarity=0.372 Sum_probs=42.3
Q ss_pred cCCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 110 FGHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 110 ~~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
+...++|.+|++|.++....+.+.+.+ ..+ ..+..++|+||+|+||||+++++|..+.+
T Consensus 8 l~~KyRP~~f~dIiGQe~~v~~L~~aI----~~~--------rl~HAYLF~GP~GtGKTt~AriLAk~LnC 66 (725)
T PRK07133 8 LYRKYRPKTFDDIVGQDHIVQTLKNII----KSN--------KISHAYLFSGPRGTGKTSVAKIFANALNC 66 (725)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHH----HcC--------CCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 345678889999998876554444444 222 12344799999999999999999987644
No 486
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.21 E-value=5.2e-06 Score=73.50 Aligned_cols=62 Identities=23% Similarity=0.298 Sum_probs=42.2
Q ss_pred CCC-ccccChhHHHHHHHHHHHHhcChhhhhhCCCC-CCcceEEEcCCCCChhHHHHHHhcccCC-------CeEEEEe
Q psy1371 118 PLN-SVVLDSGVADRILTDIKQFVADPAWYLDRGIP-YRRGYLLYGPPGCGKSSFITALAGELEF-------GICVLNL 187 (244)
Q Consensus 118 ~~~-~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~-~~~gi~l~Gp~GsGKTtl~~~la~~~~~-------~~g~i~~ 187 (244)
-|+ ++...++..+.+.+.+.... .+.. .++.++|+|||||||||++++|++.+.. +.+.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 355 66666655555555554332 2222 3455899999999999999999998865 5666766
No 487
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.21 E-value=2.8e-06 Score=70.87 Aligned_cols=89 Identities=17% Similarity=0.316 Sum_probs=50.8
Q ss_pred CCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhccc-CCCeEEEEeCCCCCC
Q psy1371 115 RRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGEL-EFGICVLNLSERGLT 193 (244)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~-~~~~g~i~~~~~~~~ 193 (244)
++.+|++..... .+.++..+..... +...++.++|+||+|+|||+|+++++... ......+.++....
T Consensus 13 ~~~~~d~f~~~~--~~~~~~~l~~~~~--------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~- 81 (227)
T PRK08903 13 PPPTFDNFVAGE--NAELVARLRELAA--------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP- 81 (227)
T ss_pred ChhhhcccccCC--cHHHHHHHHHHHh--------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh-
Confidence 346788865222 1234444433322 23345568999999999999999999875 22222223322111
Q ss_pred HHHHHHHhhhcCCCCceehhhHhhh
Q psy1371 194 DDRLNHLLSVAPQNSIILLEDIDAA 218 (244)
Q Consensus 194 ~~~~~~~~~~~~q~~~lf~deid~~ 218 (244)
...+.......++++||+|.+
T Consensus 82 ----~~~~~~~~~~~~liiDdi~~l 102 (227)
T PRK08903 82 ----LLAFDFDPEAELYAVDDVERL 102 (227)
T ss_pred ----HHHHhhcccCCEEEEeChhhc
Confidence 112233344567889999876
No 488
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=3e-06 Score=80.66 Aligned_cols=99 Identities=20% Similarity=0.317 Sum_probs=62.6
Q ss_pred ecCCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCe------
Q psy1371 109 PFGHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGI------ 182 (244)
Q Consensus 109 ~~~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~------ 182 (244)
++.+++++..|+++.++......+.+.+ ..+. ....++|+||+|+||||+++++++.+....
T Consensus 5 pl~~kyRP~~f~~liGq~~i~~~L~~~l----~~~r--------l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~ 72 (620)
T PRK14948 5 PLHHKYRPQRFDELVGQEAIATTLKNAL----ISNR--------IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTP 72 (620)
T ss_pred hHHHHhCCCcHhhccChHHHHHHHHHHH----HcCC--------CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCC
Confidence 3456678889999988776555544333 2211 123589999999999999999998875421
Q ss_pred ------------------EEEEeCC-CCCCHHHHHHHhhhcC------CCCceehhhHhhhh
Q psy1371 183 ------------------CVLNLSE-RGLTDDRLNHLLSVAP------QNSIILLEDIDAAF 219 (244)
Q Consensus 183 ------------------g~i~~~~-~~~~~~~~~~~~~~~~------q~~~lf~deid~~~ 219 (244)
..+.++. .....+.+|+.+..+. ...++++||+|.+.
T Consensus 73 ~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt 134 (620)
T PRK14948 73 EPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS 134 (620)
T ss_pred CCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC
Confidence 1112222 1233456666665443 23588899998773
No 489
>KOG0991|consensus
Probab=98.20 E-value=7.3e-07 Score=73.86 Aligned_cols=98 Identities=26% Similarity=0.429 Sum_probs=59.9
Q ss_pred cCCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCe---EEEE
Q psy1371 110 FGHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGI---CVLN 186 (244)
Q Consensus 110 ~~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~---g~i~ 186 (244)
|.++++|..++|++.+++..+.+ +....++ +.| .+.+.||||+||||.+.+||+.+-.+. +.+.
T Consensus 17 wVeKYrP~~l~dIVGNe~tv~rl----~via~~g------nmP---~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLE 83 (333)
T KOG0991|consen 17 WVEKYRPSVLQDIVGNEDTVERL----SVIAKEG------NMP---NLIISGPPGTGKTTSILCLARELLGDSYKEAVLE 83 (333)
T ss_pred HHHhhCchHHHHhhCCHHHHHHH----HHHHHcC------CCC---ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhh
Confidence 45678888899998887654433 2222222 222 378999999999999999999775432 3344
Q ss_pred eCCCCCCH-HHHHHHhhh-cC--------CCCceehhhHhhhhc
Q psy1371 187 LSERGLTD-DRLNHLLSV-AP--------QNSIILLEDIDAAFV 220 (244)
Q Consensus 187 ~~~~~~~~-~~~~~~~~~-~~--------q~~~lf~deid~~~~ 220 (244)
++..+... +.+|..+.. +. ..-++.+||+|+...
T Consensus 84 LNASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~ 127 (333)
T KOG0991|consen 84 LNASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA 127 (333)
T ss_pred ccCccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhh
Confidence 44322211 234433222 11 125788999999854
No 490
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.18 E-value=4.9e-06 Score=80.76 Aligned_cols=69 Identities=28% Similarity=0.466 Sum_probs=45.5
Q ss_pred CcceEEEcCCCCChhHHHHHHhccc----------CCCeEEEEeCC-------CCCCHHHHHHHhhhcC--CCCceehhh
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAGEL----------EFGICVLNLSE-------RGLTDDRLNHLLSVAP--QNSIILLED 214 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~~~----------~~~~g~i~~~~-------~~~~~~~~~~~~~~~~--q~~~lf~de 214 (244)
+..++|+||||+|||++++.++... ......++... .+..+..+++.+..+. ++.+||+||
T Consensus 207 ~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDE 286 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDE 286 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEecc
Confidence 4457999999999999999999653 11112221111 1223445666666553 468999999
Q ss_pred Hhhhhccc
Q psy1371 215 IDAAFVTR 222 (244)
Q Consensus 215 id~~~~~r 222 (244)
++.+...+
T Consensus 287 Ih~L~g~g 294 (758)
T PRK11034 287 IHTIIGAG 294 (758)
T ss_pred HHHHhccC
Confidence 99997654
No 491
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=2.4e-06 Score=80.40 Aligned_cols=96 Identities=19% Similarity=0.303 Sum_probs=61.3
Q ss_pred CCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCe---------
Q psy1371 112 HPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGI--------- 182 (244)
Q Consensus 112 ~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~--------- 182 (244)
.+++|.+|+++.++....+.+.+.+ ..+. .+..++|+||+|+||||+++++++.+....
T Consensus 8 ~kyRP~~f~diiGqe~iv~~L~~~i----~~~~--------i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~ 75 (563)
T PRK06647 8 TKRRPRDFNSLEGQDFVVETLKHSI----ESNK--------IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGE 75 (563)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHH----HcCC--------CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCcc
Confidence 4567889999998876655554444 2211 234589999999999999999999875421
Q ss_pred -------------EEEEeCCCC-CCHHHHHHHh---hhcC---CCCceehhhHhhhh
Q psy1371 183 -------------CVLNLSERG-LTDDRLNHLL---SVAP---QNSIILLEDIDAAF 219 (244)
Q Consensus 183 -------------g~i~~~~~~-~~~~~~~~~~---~~~~---q~~~lf~deid~~~ 219 (244)
..+.+++.. ..-+.+|+.. .+.| ...++++||+|.+.
T Consensus 76 C~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls 132 (563)
T PRK06647 76 CSSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS 132 (563)
T ss_pred chHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC
Confidence 122333322 3334555544 3333 34578899988774
No 492
>KOG0066|consensus
Probab=98.17 E-value=8.5e-07 Score=79.51 Aligned_cols=59 Identities=25% Similarity=0.372 Sum_probs=52.9
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEE
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLN 186 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~ 186 (244)
.-+.+|.|.|.+...+...+ +||+...+.++|+||||.|||||+++|.|.+.|..|...
T Consensus 587 LGlH~VtFgy~gqkpLFkkl-----------dFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~R 645 (807)
T KOG0066|consen 587 LGLHDVTFGYPGQKPLFKKL-----------DFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELR 645 (807)
T ss_pred eecccccccCCCCCchhhcc-----------cccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhh
Confidence 45789999998888888888 999999999999999999999999999999998776554
No 493
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=5.8e-06 Score=77.09 Aligned_cols=57 Identities=19% Similarity=0.302 Sum_probs=42.1
Q ss_pred CCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC
Q psy1371 111 GHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 111 ~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
.++++|.+|+++.++....+.+...+ ..+ ..+..++|+||+|+||||+++++++.+.
T Consensus 5 ~~KyRP~~fdeiiGqe~v~~~L~~~I----~~g--------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~ 61 (535)
T PRK08451 5 ALKYRPKHFDELIGQESVSKTLSLAL----DNN--------RLAHAYLFSGLRGSGKTSSARIFARALV 61 (535)
T ss_pred HHHHCCCCHHHccCcHHHHHHHHHHH----HcC--------CCCeeEEEECCCCCcHHHHHHHHHHHhc
Confidence 45678899999999877655554444 222 1234479999999999999999998763
No 494
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.15 E-value=4.2e-06 Score=73.25 Aligned_cols=38 Identities=32% Similarity=0.519 Sum_probs=33.3
Q ss_pred CCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC
Q psy1371 152 PYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE 189 (244)
Q Consensus 152 ~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~ 189 (244)
..++.++|.|||||||||+++.+|..++.+...+.++.
T Consensus 62 ~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~ 99 (327)
T TIGR01650 62 AYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDS 99 (327)
T ss_pred hcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecC
Confidence 34567999999999999999999999999888887755
No 495
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.15 E-value=6.5e-06 Score=81.33 Aligned_cols=68 Identities=22% Similarity=0.472 Sum_probs=45.9
Q ss_pred CcceEEEcCCCCChhHHHHHHhcccC----------CCeEEEEeCC-------CCCCHHHHHHHhhhcC---CCCceehh
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAGELE----------FGICVLNLSE-------RGLTDDRLNHLLSVAP---QNSIILLE 213 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~~~~----------~~~g~i~~~~-------~~~~~~~~~~~~~~~~---q~~~lf~d 213 (244)
....+|+||||+|||++++.++.... .....+++.. .+..+..+++.+..+. .+++||+|
T Consensus 194 ~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfID 273 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFID 273 (852)
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEec
Confidence 34579999999999999999998652 2223333221 1223345667766552 47899999
Q ss_pred hHhhhhcc
Q psy1371 214 DIDAAFVT 221 (244)
Q Consensus 214 eid~~~~~ 221 (244)
|++.+...
T Consensus 274 Eih~l~~~ 281 (852)
T TIGR03346 274 ELHTLVGA 281 (852)
T ss_pred cHHHhhcC
Confidence 99998753
No 496
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=3.2e-06 Score=79.69 Aligned_cols=56 Identities=23% Similarity=0.369 Sum_probs=40.9
Q ss_pred CCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC
Q psy1371 112 HPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 112 ~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
..++|.+|+++.++....+.+.+.+ ..+ ..+..++|+||+|+||||+++++++.+.
T Consensus 8 ~k~rP~~f~~viGq~~v~~~L~~~i----~~~--------~~~hayLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 8 RKWRPQTFEDVVGQEHITKTLKNAI----KQG--------KISHAYLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred HHhCCCcHHhccCcHHHHHHHHHHH----HcC--------CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567889999998876655554443 211 1234579999999999999999998764
No 497
>KOG2355|consensus
Probab=98.10 E-value=6.5e-07 Score=72.92 Aligned_cols=62 Identities=24% Similarity=0.401 Sum_probs=50.0
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE 189 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~ 189 (244)
+....+.|.|....++..++ ++.+|.+...+++|.||+|||||+|+|+|..-...+.+.+.+
T Consensus 14 ievsgl~f~y~~~dP~~~Df-----------nldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~Vlg 75 (291)
T KOG2355|consen 14 IEVSGLQFKYKVSDPIFFDF-----------NLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLG 75 (291)
T ss_pred EEEeccEEecccCCceEEEE-----------eeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcC
Confidence 45667778877666676666 888999999999999999999999999998765556666655
No 498
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.08 E-value=7.2e-06 Score=77.70 Aligned_cols=63 Identities=16% Similarity=0.352 Sum_probs=45.1
Q ss_pred ceeecCCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 106 EWRPFGHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 106 ~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
.++.+..+++|.+|+++.++....+.+.+.+ ..+. .+..++|+||+|+||||+++++++.+..
T Consensus 10 ~y~~la~KyRP~~f~dliGq~~~v~~L~~~~----~~gr--------i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c 72 (598)
T PRK09111 10 PYRVLARKYRPQTFDDLIGQEAMVRTLTNAF----ETGR--------IAQAFMLTGVRGVGKTTTARILARALNY 72 (598)
T ss_pred cchhHHhhhCCCCHHHhcCcHHHHHHHHHHH----HcCC--------CCceEEEECCCCCCHHHHHHHHHHhhCc
Confidence 3444566788999999998876555443333 2221 2345899999999999999999997753
No 499
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.08 E-value=2.1e-05 Score=76.44 Aligned_cols=63 Identities=24% Similarity=0.488 Sum_probs=41.6
Q ss_pred ceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHhh----------------hc--CCCCceehhhHhh
Q psy1371 156 GYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRLNHLLS----------------VA--PQNSIILLEDIDA 217 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~~~~~~~----------------~~--~q~~~lf~deid~ 217 (244)
.++|+||||||||++++++|..+..+...++.+...... ...+.++ .+ ...+++|+||+|.
T Consensus 490 ~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~-~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEiek 568 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERH-TVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEK 568 (758)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccc-cHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhh
Confidence 389999999999999999999987666555544311100 1111211 11 1347999999998
Q ss_pred hh
Q psy1371 218 AF 219 (244)
Q Consensus 218 ~~ 219 (244)
+.
T Consensus 569 a~ 570 (758)
T PRK11034 569 AH 570 (758)
T ss_pred hh
Confidence 74
No 500
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=7.9e-06 Score=77.63 Aligned_cols=57 Identities=16% Similarity=0.295 Sum_probs=40.7
Q ss_pred CCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 112 HPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 112 ~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
..++|.+|+++.++....+.+.+.+ ..+ ..+..++|+||+|+||||+++++|+.+..
T Consensus 8 ~kyRP~~f~eivGQe~i~~~L~~~i----~~~--------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 8 RKYRPSKFADITAQEHITHTIQNSL----RMD--------RVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHH----HcC--------CCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4567888999998766554443333 222 22234799999999999999999988755
Done!