Query psy1371
Match_columns 244
No_of_seqs 318 out of 2763
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 18:30:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1371.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1371hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 99.8 5.5E-21 1.9E-25 170.0 8.8 129 114-242 142-281 (405)
2 4b4t_M 26S protease regulatory 99.8 1.6E-20 5.6E-25 169.0 8.8 129 114-242 175-314 (434)
3 4b4t_I 26S protease regulatory 99.8 3.6E-20 1.2E-24 165.5 8.5 129 114-242 176-315 (437)
4 4b4t_K 26S protease regulatory 99.8 4.9E-20 1.7E-24 165.7 9.5 129 114-242 166-305 (428)
5 4b4t_L 26S protease subunit RP 99.8 4.9E-20 1.7E-24 166.0 9.1 129 114-242 175-314 (437)
6 4b4t_H 26S protease regulatory 99.8 9.2E-20 3.2E-24 164.2 8.8 129 114-242 203-342 (467)
7 3qf4_B Uncharacterized ABC tra 99.8 1.2E-19 4.1E-24 170.3 2.0 178 18-222 272-453 (598)
8 3b5x_A Lipid A export ATP-bind 99.8 3.1E-19 1E-23 167.1 4.4 179 16-222 258-441 (582)
9 4a82_A Cystic fibrosis transme 99.7 1.5E-19 5.1E-24 169.1 1.7 181 17-223 255-440 (578)
10 4f4c_A Multidrug resistance pr 99.7 3.1E-19 1.1E-23 180.3 1.7 183 17-224 330-518 (1321)
11 2yl4_A ATP-binding cassette SU 99.7 4E-19 1.4E-23 166.7 1.5 179 18-222 257-442 (595)
12 3b60_A Lipid A export ATP-bind 99.7 3.9E-19 1.3E-23 166.3 0.7 179 16-222 258-441 (582)
13 3qf4_A ABC transporter, ATP-bi 99.7 3.8E-19 1.3E-23 166.6 0.4 182 16-223 256-442 (587)
14 3cf2_A TER ATPase, transitiona 99.7 1.5E-17 5E-22 159.6 9.6 129 114-242 198-334 (806)
15 4f4c_A Multidrug resistance pr 99.7 5.4E-18 1.8E-22 171.3 3.3 192 16-233 989-1188(1321)
16 3cf2_A TER ATPase, transitiona 99.7 1.8E-17 6.2E-22 159.0 5.1 129 114-242 471-610 (806)
17 3g5u_A MCG1178, multidrug resi 99.6 4.7E-17 1.6E-21 164.1 4.1 180 16-223 301-489 (1284)
18 2x8a_A Nuclear valosin-contain 99.6 8.9E-16 3E-20 130.8 6.4 127 115-243 5-141 (274)
19 1xwi_A SKD1 protein; VPS4B, AA 99.6 7.1E-15 2.4E-19 127.9 12.0 126 115-241 7-141 (322)
20 3nh6_A ATP-binding cassette SU 99.6 1.4E-16 4.8E-21 137.6 -1.4 98 114-222 51-152 (306)
21 3cf0_A Transitional endoplasmi 99.6 2.3E-15 7.8E-20 129.7 5.6 128 114-241 9-147 (301)
22 3g5u_A MCG1178, multidrug resi 99.6 3.3E-16 1.1E-20 157.9 0.3 174 17-222 945-1131(1284)
23 2ce7_A Cell division protein F 99.5 2.4E-14 8.4E-19 130.5 10.6 127 114-241 10-147 (476)
24 1lv7_A FTSH; alpha/beta domain 99.5 3.5E-14 1.2E-18 119.1 10.6 127 114-241 6-143 (257)
25 3eie_A Vacuolar protein sortin 99.5 1.5E-14 5.1E-19 125.7 7.2 128 113-241 11-146 (322)
26 2qp9_X Vacuolar protein sortin 99.5 3E-14 1E-18 125.6 8.6 128 113-241 44-179 (355)
27 3h4m_A Proteasome-activating n 99.5 4.9E-14 1.7E-18 119.8 9.6 111 114-224 11-128 (285)
28 1ixz_A ATP-dependent metallopr 99.5 8.9E-14 3E-18 116.5 10.3 127 113-242 9-148 (254)
29 2dhr_A FTSH; AAA+ protein, hex 99.5 1.4E-13 4.7E-18 126.2 12.4 128 115-243 26-164 (499)
30 2qz4_A Paraplegin; AAA+, SPG7, 99.5 1.2E-13 4.2E-18 115.6 8.0 107 116-223 2-115 (262)
31 3hu3_A Transitional endoplasmi 99.4 1.4E-13 4.9E-18 126.0 8.2 126 116-241 200-333 (489)
32 3b9p_A CG5977-PA, isoform A; A 99.4 2.9E-13 9.9E-18 115.7 9.5 128 113-241 14-149 (297)
33 1ypw_A Transitional endoplasmi 99.4 1.7E-13 5.8E-18 132.5 8.6 128 114-241 198-333 (806)
34 1iy2_A ATP-dependent metallopr 99.4 5.2E-13 1.8E-17 113.4 10.3 125 115-242 35-172 (278)
35 3gfo_A Cobalt import ATP-bindi 99.4 5.9E-15 2E-19 125.7 -2.0 116 117-243 8-134 (275)
36 2zan_A Vacuolar protein sortin 99.4 1.3E-13 4.4E-18 125.0 6.4 129 113-242 127-264 (444)
37 3d8b_A Fidgetin-like protein 1 99.4 4.9E-13 1.7E-17 117.8 8.9 128 113-241 77-212 (357)
38 2ff7_A Alpha-hemolysin translo 99.4 3.4E-14 1.2E-18 119.2 0.5 95 116-221 7-106 (247)
39 3t15_A Ribulose bisphosphate c 99.4 1.7E-13 5.8E-18 117.6 4.5 94 148-241 30-137 (293)
40 3vfd_A Spastin; ATPase, microt 99.4 8.5E-13 2.9E-17 117.4 9.2 128 113-241 108-243 (389)
41 2pcj_A ABC transporter, lipopr 99.4 3E-14 1E-18 117.8 -0.6 115 117-243 5-131 (224)
42 3tui_C Methionine import ATP-b 99.4 3.1E-14 1.1E-18 125.4 -0.7 117 116-243 24-154 (366)
43 2olj_A Amino acid ABC transpor 99.4 5.4E-14 1.8E-18 119.0 0.3 115 116-242 24-149 (263)
44 3tif_A Uncharacterized ABC tra 99.4 8.6E-14 2.9E-18 115.9 0.9 113 119-242 4-134 (235)
45 1ypw_A Transitional endoplasmi 99.4 2.5E-13 8.6E-18 131.3 4.0 128 114-241 471-609 (806)
46 1b0u_A Histidine permease; ABC 99.4 8.9E-14 3E-18 117.7 0.6 114 117-242 7-142 (262)
47 1sgw_A Putative ABC transporte 99.3 3.4E-14 1.2E-18 116.7 -2.0 110 116-242 10-124 (214)
48 1vpl_A ABC transporter, ATP-bi 99.3 7.3E-14 2.5E-18 117.8 -0.1 117 114-242 13-136 (256)
49 3fvq_A Fe(3+) IONS import ATP- 99.3 1.6E-14 5.5E-19 127.1 -4.4 115 117-243 5-129 (359)
50 1ji0_A ABC transporter; ATP bi 99.3 1.1E-13 3.9E-18 115.5 0.4 112 117-240 7-126 (240)
51 3rlf_A Maltose/maltodextrin im 99.3 2.5E-14 8.6E-19 126.7 -3.9 115 117-243 4-124 (381)
52 1g6h_A High-affinity branched- 99.3 9.7E-14 3.3E-18 117.1 -0.3 83 117-211 8-94 (257)
53 4g1u_C Hemin import ATP-bindin 99.3 2.1E-13 7.1E-18 115.6 1.2 115 117-243 12-132 (266)
54 1z47_A CYSA, putative ABC-tran 99.3 3.6E-14 1.2E-18 124.8 -3.8 115 116-242 14-135 (355)
55 2ixe_A Antigen peptide transpo 99.3 1.3E-13 4.3E-18 117.3 -0.5 94 116-220 16-115 (271)
56 2yz2_A Putative ABC transporte 99.3 9.5E-14 3.3E-18 117.7 -1.7 95 148-242 27-126 (266)
57 2qi9_C Vitamin B12 import ATP- 99.3 3.8E-13 1.3E-17 113.0 1.9 92 148-242 20-116 (249)
58 1mv5_A LMRA, multidrug resista 99.3 3.8E-14 1.3E-18 118.6 -4.3 93 118-221 3-99 (243)
59 2it1_A 362AA long hypothetical 99.3 7.2E-14 2.5E-18 123.2 -2.9 115 117-243 4-124 (362)
60 2ihy_A ABC transporter, ATP-bi 99.3 6.7E-14 2.3E-18 119.4 -3.2 81 117-209 22-107 (279)
61 2r62_A Cell division protease 99.3 5.4E-13 1.8E-17 112.4 2.0 108 114-222 5-119 (268)
62 3d31_A Sulfate/molybdate ABC t 99.3 1.3E-13 4.3E-18 121.1 -2.1 109 119-243 4-118 (348)
63 2yyz_A Sugar ABC transporter, 99.3 6.7E-14 2.3E-18 123.3 -4.5 114 117-242 4-123 (359)
64 1v43_A Sugar-binding transport 99.3 8E-14 2.7E-18 123.3 -4.1 115 117-243 12-132 (372)
65 3gd7_A Fusion complex of cysti 99.3 2.3E-13 8E-18 121.1 -1.1 93 115-219 18-115 (390)
66 2ghi_A Transport protein; mult 99.3 3.2E-13 1.1E-17 114.1 -0.4 93 116-220 17-115 (260)
67 1oxx_K GLCV, glucose, ABC tran 99.3 4.6E-14 1.6E-18 124.2 -5.9 115 117-243 4-131 (353)
68 1g29_1 MALK, maltose transport 99.3 6.4E-14 2.2E-18 124.0 -5.4 113 118-242 5-129 (372)
69 2onk_A Molybdate/tungstate ABC 99.2 4.6E-13 1.6E-17 111.9 -1.6 109 119-242 4-116 (240)
70 2pze_A Cystic fibrosis transme 99.2 5.3E-13 1.8E-17 110.6 -2.3 83 117-220 7-91 (229)
71 2cbz_A Multidrug resistance-as 99.2 3.4E-13 1.2E-17 112.4 -3.6 83 117-220 4-88 (237)
72 2d2e_A SUFC protein; ABC-ATPas 99.1 3.7E-12 1.3E-16 106.9 0.1 82 118-211 5-92 (250)
73 2nq2_C Hypothetical ABC transp 99.1 7.4E-13 2.5E-17 111.4 -4.4 74 117-211 5-78 (253)
74 2c9o_A RUVB-like 1; hexameric 99.1 4E-11 1.4E-15 108.9 5.4 101 116-225 33-145 (456)
75 2zu0_C Probable ATP-dependent 99.1 8.5E-12 2.9E-16 105.7 -0.2 84 116-211 20-109 (267)
76 2v9p_A Replication protein E1; 99.1 1.8E-11 6.3E-16 105.4 1.4 68 117-215 102-169 (305)
77 2pjz_A Hypothetical protein ST 99.0 8.8E-13 3E-17 111.6 -8.1 60 148-210 25-86 (263)
78 3syl_A Protein CBBX; photosynt 99.0 8.1E-10 2.8E-14 94.5 9.4 118 121-241 32-164 (309)
79 2bbs_A Cystic fibrosis transme 99.0 1.1E-11 3.9E-16 106.1 -2.5 80 116-219 40-120 (290)
80 3pfi_A Holliday junction ATP-d 99.0 3.5E-09 1.2E-13 91.8 12.0 100 111-219 20-119 (338)
81 3hws_A ATP-dependent CLP prote 99.0 5.4E-10 1.8E-14 98.3 6.6 89 153-241 50-155 (363)
82 1d2n_A N-ethylmaleimide-sensit 99.0 5.4E-09 1.8E-13 88.1 11.9 94 148-241 58-159 (272)
83 1ofh_A ATP-dependent HSL prote 98.8 5.8E-09 2E-13 88.9 7.5 120 122-241 17-153 (310)
84 1g41_A Heat shock protein HSLU 98.8 5.5E-09 1.9E-13 94.2 7.1 117 121-241 16-140 (444)
85 1um8_A ATP-dependent CLP prote 98.8 1.9E-08 6.4E-13 88.8 10.2 89 153-241 71-176 (376)
86 1htw_A HI0065; nucleotide-bind 98.8 3.4E-09 1.2E-13 82.7 3.8 59 121-192 12-70 (158)
87 1sxj_A Activator 1 95 kDa subu 98.8 8.6E-09 2.9E-13 94.9 7.0 110 111-221 30-163 (516)
88 1hqc_A RUVB; extended AAA-ATPa 98.8 2.4E-08 8.1E-13 85.8 9.1 98 113-219 5-103 (324)
89 3m6a_A ATP-dependent protease 98.8 3.6E-09 1.2E-13 98.1 4.0 70 153-222 107-191 (543)
90 3uk6_A RUVB-like 2; hexameric 98.8 1.6E-08 5.4E-13 88.6 7.9 59 115-181 38-97 (368)
91 3pvs_A Replication-associated 98.8 9.8E-09 3.3E-13 93.0 6.7 94 112-220 18-120 (447)
92 1in4_A RUVB, holliday junction 98.7 3.8E-08 1.3E-12 85.6 9.1 98 113-219 18-115 (334)
93 3ec2_A DNA replication protein 98.7 1.7E-08 5.8E-13 79.7 5.6 60 115-180 5-64 (180)
94 2gza_A Type IV secretion syste 98.7 8.1E-09 2.8E-13 91.0 3.8 61 118-189 137-210 (361)
95 2pt7_A CAG-ALFA; ATPase, prote 98.7 7.4E-09 2.5E-13 90.2 3.5 56 119-189 151-206 (330)
96 3u61_B DNA polymerase accessor 98.7 1.2E-08 4E-13 88.1 4.5 95 111-219 17-118 (324)
97 2p65_A Hypothetical protein PF 98.7 2.9E-08 1E-12 77.7 5.9 93 116-221 18-130 (187)
98 1svm_A Large T antigen; AAA+ f 98.6 3.7E-08 1.3E-12 87.2 7.1 68 148-220 163-230 (377)
99 1jbk_A CLPB protein; beta barr 98.6 4.1E-08 1.4E-12 76.9 6.6 93 116-221 18-130 (195)
100 3n70_A Transport activator; si 98.6 3.7E-08 1.3E-12 75.3 5.9 64 154-220 24-90 (145)
101 2chg_A Replication factor C sm 98.6 4.4E-08 1.5E-12 78.6 6.2 96 110-219 7-115 (226)
102 3co5_A Putative two-component 98.6 9.4E-09 3.2E-13 78.5 1.9 63 154-220 27-89 (143)
103 2dpy_A FLII, flagellum-specifi 98.6 7.2E-09 2.5E-13 93.6 1.0 64 115-190 130-193 (438)
104 2kjq_A DNAA-related protein; s 98.6 2E-08 6.8E-13 77.5 3.2 60 153-219 35-96 (149)
105 2eyu_A Twitching motility prot 98.6 1.8E-08 6E-13 84.9 2.2 55 117-189 6-61 (261)
106 1sxj_C Activator 1 40 kDa subu 98.5 1.7E-08 5.8E-13 87.8 1.5 96 111-219 16-123 (340)
107 3sop_A Neuronal-specific septi 98.5 4.5E-09 1.5E-13 89.0 -2.5 55 156-210 4-58 (270)
108 1sxj_D Activator 1 41 kDa subu 98.5 5.3E-08 1.8E-12 84.5 4.1 57 110-179 27-83 (353)
109 2chq_A Replication factor C sm 98.5 4.8E-08 1.6E-12 83.4 3.7 100 107-219 4-115 (319)
110 3aez_A Pantothenate kinase; tr 98.5 2.1E-08 7.1E-13 86.6 1.4 65 114-181 41-117 (312)
111 1sxj_E Activator 1 40 kDa subu 98.5 4.9E-08 1.7E-12 84.9 3.8 88 110-210 4-94 (354)
112 1njg_A DNA polymerase III subu 98.5 9.6E-08 3.3E-12 77.4 5.3 96 111-218 14-138 (250)
113 1z6g_A Guanylate kinase; struc 98.5 4.7E-08 1.6E-12 80.0 2.7 37 148-187 17-53 (218)
114 3b85_A Phosphate starvation-in 98.5 3.3E-09 1.1E-13 86.4 -4.5 55 153-208 21-75 (208)
115 4a74_A DNA repair and recombin 98.5 1.1E-07 3.8E-12 77.4 4.3 43 149-191 20-69 (231)
116 3bos_A Putative DNA replicatio 98.5 4.4E-08 1.5E-12 80.0 1.9 92 116-220 24-118 (242)
117 1l8q_A Chromosomal replication 98.4 1.1E-07 3.9E-12 81.9 4.5 66 153-220 36-112 (324)
118 2bjv_A PSP operon transcriptio 98.4 2.8E-07 9.7E-12 77.1 6.8 89 118-219 4-113 (265)
119 3cmw_A Protein RECA, recombina 98.4 1.1E-07 3.9E-12 97.3 5.1 126 117-242 1017-1203(1706)
120 2npi_A Protein CLP1; CLP1-PCF1 98.4 6.3E-09 2.1E-13 94.5 -3.8 57 148-210 132-190 (460)
121 2w58_A DNAI, primosome compone 98.4 7.3E-08 2.5E-12 77.3 2.7 59 115-179 20-79 (202)
122 2obl_A ESCN; ATPase, hydrolase 98.4 7.7E-08 2.6E-12 84.3 3.1 64 115-190 44-107 (347)
123 1r6b_X CLPA protein; AAA+, N-t 98.4 4.9E-07 1.7E-11 86.7 8.6 96 115-223 181-295 (758)
124 2qm8_A GTPase/ATPase; G protei 98.4 2.6E-08 9E-13 86.9 -0.7 82 118-211 31-119 (337)
125 2iw3_A Elongation factor 3A; a 98.4 1E-08 3.4E-13 100.2 -4.2 62 117-189 672-734 (986)
126 1qvr_A CLPB protein; coiled co 98.4 4.5E-07 1.5E-11 88.2 7.4 94 116-222 166-279 (854)
127 1sq5_A Pantothenate kinase; P- 98.4 1.2E-07 4E-12 81.7 2.8 85 116-204 37-134 (308)
128 1zp6_A Hypothetical protein AT 98.4 2.2E-07 7.7E-12 73.6 4.3 38 150-189 5-42 (191)
129 3b9q_A Chloroplast SRP recepto 98.4 2.2E-07 7.6E-12 79.8 4.4 81 129-209 73-164 (302)
130 3nwj_A ATSK2; P loop, shikimat 98.4 1.2E-07 4.3E-12 79.2 2.7 55 116-181 17-75 (250)
131 4fcw_A Chaperone protein CLPB; 98.4 7.8E-07 2.7E-11 75.8 7.5 26 156-181 49-74 (311)
132 1jr3_A DNA polymerase III subu 98.3 7.4E-07 2.5E-11 77.7 7.3 58 111-180 7-64 (373)
133 3c8u_A Fructokinase; YP_612366 98.3 5.1E-07 1.7E-11 73.0 5.7 42 151-192 19-63 (208)
134 2f1r_A Molybdopterin-guanine d 98.3 1E-07 3.5E-12 75.2 1.5 58 155-212 3-74 (171)
135 1sxj_B Activator 1 37 kDa subu 98.3 2.5E-07 8.7E-12 78.9 3.8 95 112-219 13-120 (323)
136 2v1u_A Cell division control p 98.3 1.6E-06 5.6E-11 75.6 8.9 27 152-178 42-68 (387)
137 1pzn_A RAD51, DNA repair and r 98.3 5.6E-07 1.9E-11 78.8 5.8 72 148-222 125-204 (349)
138 2yhs_A FTSY, cell division pro 98.3 2.9E-07 1E-11 83.8 4.0 62 148-209 287-357 (503)
139 1iqp_A RFCS; clamp loader, ext 98.3 4.9E-07 1.7E-11 77.3 5.2 95 112-219 17-123 (327)
140 3te6_A Regulatory protein SIR3 98.3 2.8E-07 9.4E-12 79.7 3.5 68 152-219 43-145 (318)
141 3k1j_A LON protease, ATP-depen 98.3 2.2E-07 7.6E-12 87.1 3.1 59 114-187 35-94 (604)
142 2qgz_A Helicase loader, putati 98.3 6.4E-07 2.2E-11 77.1 5.6 58 116-179 120-177 (308)
143 2og2_A Putative signal recogni 98.3 4.4E-07 1.5E-11 79.7 4.3 80 130-209 131-221 (359)
144 1yqt_A RNAse L inhibitor; ATP- 98.3 5.3E-08 1.8E-12 90.1 -2.3 36 150-185 43-78 (538)
145 3vaa_A Shikimate kinase, SK; s 98.2 5.4E-07 1.8E-11 72.3 3.8 43 129-182 11-53 (199)
146 3pxg_A Negative regulator of g 98.2 1E-06 3.4E-11 80.2 5.4 87 114-213 174-274 (468)
147 2jeo_A Uridine-cytidine kinase 98.2 4.3E-07 1.5E-11 75.3 2.7 39 130-179 12-50 (245)
148 3euj_A Chromosome partition pr 98.2 2.6E-07 9E-12 84.1 1.4 44 148-192 24-67 (483)
149 1fnn_A CDC6P, cell division co 98.2 4.6E-06 1.6E-10 72.9 9.2 60 120-188 17-80 (389)
150 1znw_A Guanylate kinase, GMP k 98.2 5.3E-07 1.8E-11 72.8 2.9 30 150-179 16-45 (207)
151 1cr0_A DNA primase/helicase; R 98.2 6.5E-07 2.2E-11 76.2 3.4 52 148-199 29-81 (296)
152 3ozx_A RNAse L inhibitor; ATP 98.2 4.3E-07 1.5E-11 84.0 2.4 39 151-189 291-329 (538)
153 1tf7_A KAIC; homohexamer, hexa 98.2 8.9E-07 3E-11 81.6 4.5 65 131-207 26-96 (525)
154 3tr0_A Guanylate kinase, GMP k 98.2 6.4E-07 2.2E-11 71.7 3.1 29 151-179 4-32 (205)
155 1tq4_A IIGP1, interferon-induc 98.2 2.3E-07 7.9E-12 83.0 0.5 35 156-190 71-105 (413)
156 2oap_1 GSPE-2, type II secreti 98.2 6E-07 2.1E-11 82.5 3.2 42 148-189 254-295 (511)
157 2qby_B CDC6 homolog 3, cell di 98.2 2.5E-06 8.7E-11 74.6 7.1 50 120-178 20-69 (384)
158 3pxi_A Negative regulator of g 98.2 5.6E-06 1.9E-10 79.5 9.7 62 156-218 523-591 (758)
159 1lvg_A Guanylate kinase, GMP k 98.2 9.3E-07 3.2E-11 71.0 3.6 28 152-179 2-29 (198)
160 1s96_A Guanylate kinase, GMP k 98.2 5.8E-07 2E-11 73.6 2.4 60 150-210 12-73 (219)
161 2j41_A Guanylate kinase; GMP, 98.2 1.1E-06 3.7E-11 70.3 3.9 34 150-183 2-35 (207)
162 3bk7_A ABC transporter ATP-bin 98.2 1E-07 3.4E-12 89.4 -2.6 36 150-185 113-148 (607)
163 2r44_A Uncharacterized protein 98.1 8.5E-07 2.9E-11 76.5 2.9 33 155-187 47-79 (331)
164 1r6b_X CLPA protein; AAA+, N-t 98.1 6.2E-06 2.1E-10 79.1 9.2 62 156-218 490-569 (758)
165 1rj9_A FTSY, signal recognitio 98.1 8E-07 2.7E-11 76.4 2.7 57 153-209 101-166 (304)
166 3szr_A Interferon-induced GTP- 98.1 1E-06 3.4E-11 82.7 3.5 69 117-189 11-81 (608)
167 3a00_A Guanylate kinase, GMP k 98.1 9.7E-07 3.3E-11 70.0 2.9 26 155-180 2-27 (186)
168 1ojl_A Transcriptional regulat 98.1 2.4E-06 8.2E-11 73.3 5.4 65 153-219 24-109 (304)
169 2ehv_A Hypothetical protein PH 98.1 9.7E-07 3.3E-11 72.6 2.8 40 150-189 26-67 (251)
170 3pxi_A Negative regulator of g 98.1 2.1E-06 7.3E-11 82.4 5.4 87 114-213 174-274 (758)
171 2qby_A CDC6 homolog 1, cell di 98.1 4.6E-06 1.6E-10 72.6 7.1 26 153-178 44-69 (386)
172 1p9r_A General secretion pathw 98.1 2.3E-06 7.8E-11 76.7 5.1 60 116-189 143-202 (418)
173 1yqt_A RNAse L inhibitor; ATP- 98.1 7E-07 2.4E-11 82.6 1.4 37 151-187 309-345 (538)
174 3asz_A Uridine kinase; cytidin 98.1 1.5E-06 5E-11 70.0 3.1 37 152-188 4-40 (211)
175 4gp7_A Metallophosphoesterase; 98.1 6.6E-07 2.3E-11 70.2 1.0 25 148-172 3-27 (171)
176 2z4s_A Chromosomal replication 98.1 2.3E-06 7.9E-11 77.1 4.6 64 154-220 130-208 (440)
177 3lnc_A Guanylate kinase, GMP k 98.1 1E-06 3.5E-11 72.2 1.8 31 148-178 21-52 (231)
178 3bk7_A ABC transporter ATP-bin 98.0 8.5E-07 2.9E-11 83.1 1.2 48 151-208 379-426 (607)
179 4eun_A Thermoresistant glucoki 98.0 3.5E-06 1.2E-10 67.5 4.6 27 152-178 27-53 (200)
180 2w0m_A SSO2452; RECA, SSPF, un 98.0 1.3E-06 4.4E-11 70.9 1.9 47 150-196 19-65 (235)
181 3e70_C DPA, signal recognition 98.0 1.6E-06 5.6E-11 75.2 2.6 40 152-191 127-166 (328)
182 1ye8_A Protein THEP1, hypothet 98.0 1.7E-06 5.7E-11 68.6 2.4 25 156-180 2-26 (178)
183 2ewv_A Twitching motility prot 98.0 1E-06 3.4E-11 77.9 1.2 44 144-187 126-170 (372)
184 3ozx_A RNAse L inhibitor; ATP 98.0 1.2E-06 4E-11 81.1 1.7 32 154-185 25-56 (538)
185 2i3b_A HCR-ntpase, human cance 98.0 6.7E-07 2.3E-11 71.6 -0.0 25 155-179 2-26 (189)
186 2qag_B Septin-6, protein NEDD5 98.0 2.4E-06 8.2E-11 76.6 3.4 48 117-178 17-66 (427)
187 2gno_A DNA polymerase III, gam 98.0 1E-05 3.6E-10 69.4 7.2 65 155-219 19-95 (305)
188 1u0l_A Probable GTPase ENGC; p 98.0 3E-06 1E-10 72.6 3.5 40 153-192 168-210 (301)
189 1a5t_A Delta prime, HOLB; zinc 98.0 1.3E-05 4.6E-10 69.4 7.3 65 155-219 25-121 (334)
190 3j16_B RLI1P; ribosome recycli 98.0 2.8E-06 9.5E-11 79.6 3.1 36 150-185 99-134 (608)
191 2vhj_A Ntpase P4, P4; non- hyd 98.0 1.4E-06 4.7E-11 75.3 0.9 73 150-222 119-198 (331)
192 1kgd_A CASK, peripheral plasma 98.0 3.4E-06 1.1E-10 66.6 3.0 26 154-179 5-30 (180)
193 1kag_A SKI, shikimate kinase I 98.0 3.4E-06 1.2E-10 65.5 3.0 27 154-180 4-30 (173)
194 2rcn_A Probable GTPase ENGC; Y 98.0 1.6E-06 5.6E-11 76.0 1.1 56 154-210 215-272 (358)
195 1lw7_A Transcriptional regulat 97.9 2.3E-06 8E-11 75.1 1.7 40 148-187 162-207 (365)
196 1n0w_A DNA repair protein RAD5 97.9 1.1E-05 3.7E-10 66.0 5.5 42 149-190 19-67 (243)
197 3tau_A Guanylate kinase, GMP k 97.9 6.4E-06 2.2E-10 66.5 4.0 29 152-180 6-34 (208)
198 1tue_A Replication protein E1; 97.9 4.2E-06 1.4E-10 67.7 2.4 30 150-179 54-83 (212)
199 3nbx_X ATPase RAVA; AAA+ ATPas 97.9 1.5E-05 5.1E-10 73.0 6.3 27 154-180 41-67 (500)
200 1qhl_A Protein (cell division 97.9 5.9E-07 2E-11 74.0 -3.2 36 157-192 30-65 (227)
201 4akg_A Glutathione S-transfera 97.8 3.1E-05 1.1E-09 82.7 8.4 69 153-222 1266-1352(2695)
202 3uie_A Adenylyl-sulfate kinase 97.8 6.8E-06 2.3E-10 65.8 2.6 29 151-179 22-50 (200)
203 2bbw_A Adenylate kinase 4, AK4 97.8 5E-06 1.7E-10 68.8 1.8 34 154-187 27-63 (246)
204 2bdt_A BH3686; alpha-beta prot 97.8 5E-06 1.7E-10 65.8 1.6 24 155-178 3-26 (189)
205 3jvv_A Twitching mobility prot 97.8 3.5E-06 1.2E-10 74.0 0.6 27 155-181 124-150 (356)
206 3ney_A 55 kDa erythrocyte memb 97.8 1.1E-05 3.7E-10 64.9 3.2 29 151-179 16-44 (197)
207 3kta_A Chromosome segregation 97.8 5.9E-06 2E-10 64.9 1.6 25 156-180 28-52 (182)
208 1t9h_A YLOQ, probable GTPase E 97.8 2.7E-06 9.2E-11 73.1 -0.4 37 151-187 170-206 (307)
209 3j16_B RLI1P; ribosome recycli 97.8 1.1E-05 3.8E-10 75.5 3.7 30 155-184 379-408 (608)
210 1pui_A ENGB, probable GTP-bind 97.8 3.6E-06 1.2E-10 67.3 0.3 31 148-178 20-50 (210)
211 1rz3_A Hypothetical protein rb 97.8 1.4E-05 4.9E-10 64.0 3.9 33 151-183 19-51 (201)
212 1qvr_A CLPB protein; coiled co 97.8 3.3E-05 1.1E-09 75.1 7.0 32 156-187 590-624 (854)
213 2yv5_A YJEQ protein; hydrolase 97.8 9.7E-06 3.3E-10 69.5 2.6 54 154-208 165-224 (302)
214 1knq_A Gluconate kinase; ALFA/ 97.8 1.1E-05 3.8E-10 62.8 2.8 26 154-179 8-33 (175)
215 2cvh_A DNA repair and recombin 97.8 2.6E-05 8.8E-10 62.7 5.0 27 150-176 16-42 (220)
216 1qhx_A CPT, protein (chloramph 97.7 1.5E-05 5.3E-10 62.1 3.5 32 155-186 4-35 (178)
217 4aby_A DNA repair protein RECN 97.7 4.7E-06 1.6E-10 74.1 0.5 31 148-179 55-85 (415)
218 4e22_A Cytidylate kinase; P-lo 97.7 8.4E-06 2.9E-10 67.9 1.7 35 152-186 25-62 (252)
219 3lda_A DNA repair protein RAD5 97.7 5.4E-05 1.8E-09 67.4 6.9 42 150-191 174-222 (400)
220 2p5t_B PEZT; postsegregational 97.7 3.3E-05 1.1E-09 64.2 5.2 36 151-186 29-64 (253)
221 1cke_A CK, MSSA, protein (cyti 97.7 1.8E-05 6.3E-10 64.1 3.3 25 155-179 6-30 (227)
222 1vma_A Cell division protein F 97.7 2.1E-05 7.3E-10 67.5 3.6 58 130-188 81-138 (306)
223 1g8p_A Magnesium-chelatase 38 97.7 2.6E-05 8.9E-10 67.3 3.9 52 115-179 19-70 (350)
224 3tqc_A Pantothenate kinase; bi 97.7 6.3E-05 2.2E-09 65.0 6.2 35 156-190 94-133 (321)
225 1gvn_B Zeta; postsegregational 97.7 7.5E-05 2.6E-09 63.4 6.6 33 154-186 33-65 (287)
226 2rhm_A Putative kinase; P-loop 97.7 3E-05 1E-09 61.1 3.8 30 152-181 3-32 (193)
227 2qt1_A Nicotinamide riboside k 97.6 2.5E-05 8.7E-10 62.6 3.2 28 151-178 18-45 (207)
228 1oix_A RAS-related protein RAB 97.6 3.7E-05 1.3E-09 60.8 4.1 25 156-180 31-55 (191)
229 1y63_A LMAJ004144AAA protein; 97.6 3.1E-05 1E-09 61.1 3.5 32 148-179 4-36 (184)
230 3trf_A Shikimate kinase, SK; a 97.6 3.2E-05 1.1E-09 60.7 3.6 29 154-182 5-33 (185)
231 3kb2_A SPBC2 prophage-derived 97.6 3E-05 1E-09 59.8 3.3 26 156-181 3-28 (173)
232 3ice_A Transcription terminati 97.6 8.9E-06 3.1E-10 71.8 0.2 54 114-178 131-198 (422)
233 3cmu_A Protein RECA, recombina 97.6 3.2E-05 1.1E-09 80.5 4.3 92 150-241 1423-1547(2050)
234 2qor_A Guanylate kinase; phosp 97.6 3.1E-05 1.1E-09 62.1 3.3 29 151-179 9-37 (204)
235 3hr8_A Protein RECA; alpha and 97.6 1.7E-05 5.9E-10 69.5 1.8 33 149-181 56-88 (356)
236 2qnr_A Septin-2, protein NEDD5 97.6 1.1E-05 3.7E-10 69.1 0.4 32 157-189 21-53 (301)
237 3f9v_A Minichromosome maintena 97.6 8.3E-06 2.8E-10 76.3 -0.6 26 156-181 329-354 (595)
238 3t61_A Gluconokinase; PSI-biol 97.6 4.4E-05 1.5E-09 60.9 3.7 26 155-180 19-44 (202)
239 1nij_A Hypothetical protein YJ 97.5 1.7E-05 5.9E-10 68.3 1.1 34 156-189 6-47 (318)
240 1via_A Shikimate kinase; struc 97.5 4.4E-05 1.5E-09 59.5 3.2 26 156-181 6-31 (175)
241 1jjv_A Dephospho-COA kinase; P 97.5 4.7E-05 1.6E-09 60.9 3.4 21 156-176 4-24 (206)
242 3iij_A Coilin-interacting nucl 97.5 6.1E-05 2.1E-09 58.9 3.8 29 152-180 9-37 (180)
243 2dr3_A UPF0273 protein PH0284; 97.5 3.9E-05 1.3E-09 62.7 2.6 30 148-177 17-46 (247)
244 3ux8_A Excinuclease ABC, A sub 97.5 2.8E-05 9.6E-10 73.6 1.9 38 148-185 38-96 (670)
245 1u0j_A DNA replication protein 97.5 4.7E-05 1.6E-09 64.0 3.0 28 152-179 102-129 (267)
246 3cm0_A Adenylate kinase; ATP-b 97.5 3.9E-05 1.3E-09 60.2 2.4 27 154-180 4-30 (186)
247 2if2_A Dephospho-COA kinase; a 97.5 5.2E-05 1.8E-09 60.5 3.2 23 156-179 3-25 (204)
248 2pez_A Bifunctional 3'-phospho 97.5 8.1E-05 2.8E-09 58.2 4.0 25 154-178 5-29 (179)
249 1m7g_A Adenylylsulfate kinase; 97.5 3.3E-05 1.1E-09 62.2 1.8 33 151-183 22-54 (211)
250 1nlf_A Regulatory protein REPA 97.5 3.9E-05 1.3E-09 64.6 2.3 30 150-179 26-55 (279)
251 1ls1_A Signal recognition part 97.5 0.00011 3.6E-09 62.7 4.9 58 131-190 77-134 (295)
252 2fna_A Conserved hypothetical 97.4 0.00036 1.2E-08 59.8 8.2 33 155-187 31-63 (357)
253 1w5s_A Origin recognition comp 97.4 9E-05 3.1E-09 65.2 4.3 25 155-179 51-77 (412)
254 1zu4_A FTSY; GTPase, signal re 97.4 6.6E-05 2.2E-09 64.8 3.3 61 130-190 76-141 (320)
255 2f9l_A RAB11B, member RAS onco 97.4 7.6E-05 2.6E-09 59.2 3.4 23 156-178 7-29 (199)
256 1ni3_A YCHF GTPase, YCHF GTP-b 97.4 0.00012 4.1E-09 64.9 5.0 38 152-189 18-67 (392)
257 3lw7_A Adenylate kinase relate 97.4 7.2E-05 2.4E-09 57.5 3.1 24 156-180 3-26 (179)
258 2ze6_A Isopentenyl transferase 97.4 6.2E-05 2.1E-09 62.7 2.9 26 156-181 3-28 (253)
259 3umf_A Adenylate kinase; rossm 97.4 7.2E-05 2.5E-09 61.0 3.2 33 148-180 23-55 (217)
260 2iyv_A Shikimate kinase, SK; t 97.4 9E-05 3.1E-09 58.0 3.6 26 156-181 4-29 (184)
261 1ly1_A Polynucleotide kinase; 97.4 6.9E-05 2.4E-09 58.1 2.8 22 155-176 3-24 (181)
262 2ga8_A Hypothetical 39.9 kDa p 97.4 0.00012 4.1E-09 63.9 4.5 42 129-181 8-51 (359)
263 1kht_A Adenylate kinase; phosp 97.4 5.6E-05 1.9E-09 59.3 2.2 25 155-179 4-28 (192)
264 3cr8_A Sulfate adenylyltranfer 97.4 3.1E-05 1.1E-09 71.7 0.7 39 151-189 366-406 (552)
265 2c95_A Adenylate kinase 1; tra 97.4 9.3E-05 3.2E-09 58.3 3.4 27 154-180 9-35 (196)
266 2vp4_A Deoxynucleoside kinase; 97.4 6.2E-05 2.1E-09 61.6 2.4 26 152-177 18-43 (230)
267 2cdn_A Adenylate kinase; phosp 97.4 0.00012 3.9E-09 58.4 3.9 27 155-181 21-47 (201)
268 2v54_A DTMP kinase, thymidylat 97.4 0.00018 6E-09 57.1 5.0 25 154-178 4-28 (204)
269 2yvu_A Probable adenylyl-sulfa 97.4 5.8E-05 2E-09 59.4 2.1 30 152-181 11-40 (186)
270 2jaq_A Deoxyguanosine kinase; 97.3 7.7E-05 2.7E-09 59.1 2.6 24 157-180 3-26 (205)
271 1qf9_A UMP/CMP kinase, protein 97.3 0.00012 4E-09 57.4 3.5 26 155-180 7-32 (194)
272 3dl0_A Adenylate kinase; phosp 97.3 0.00011 3.8E-09 59.1 3.5 25 157-181 3-27 (216)
273 1zuh_A Shikimate kinase; alpha 97.3 0.00012 4.2E-09 56.4 3.5 28 155-182 8-35 (168)
274 2r2a_A Uncharacterized protein 97.3 7.2E-05 2.5E-09 60.2 2.2 19 156-174 7-25 (199)
275 3fb4_A Adenylate kinase; psych 97.3 0.00011 3.8E-09 59.0 3.4 25 157-181 3-27 (216)
276 1tev_A UMP-CMP kinase; ploop, 97.3 8.4E-05 2.9E-09 58.4 2.5 26 155-180 4-29 (196)
277 2vli_A Antibiotic resistance p 97.3 9.3E-05 3.2E-09 57.7 2.8 27 155-181 6-32 (183)
278 2iw3_A Elongation factor 3A; a 97.3 5.4E-05 1.9E-09 74.2 1.6 48 117-176 436-483 (986)
279 2z0h_A DTMP kinase, thymidylat 97.3 0.00019 6.4E-09 56.6 4.5 22 157-178 3-24 (197)
280 2bwj_A Adenylate kinase 5; pho 97.3 9.2E-05 3.2E-09 58.5 2.6 27 154-180 12-38 (199)
281 1zak_A Adenylate kinase; ATP:A 97.3 9.9E-05 3.4E-09 59.8 2.8 27 154-180 5-31 (222)
282 1nks_A Adenylate kinase; therm 97.3 8.4E-05 2.9E-09 58.3 2.3 24 156-179 3-26 (194)
283 2plr_A DTMP kinase, probable t 97.3 0.0001 3.5E-09 58.8 2.8 26 155-180 5-30 (213)
284 1tf7_A KAIC; homohexamer, hexa 97.3 0.00012 4E-09 67.3 3.4 34 148-181 275-308 (525)
285 1aky_A Adenylate kinase; ATP:A 97.3 0.00013 4.6E-09 58.9 3.4 26 155-180 5-30 (220)
286 1zd8_A GTP:AMP phosphotransfer 97.3 0.00013 4.4E-09 59.3 3.2 27 154-180 7-33 (227)
287 1e6c_A Shikimate kinase; phosp 97.3 0.00013 4.5E-09 56.3 3.0 26 156-181 4-29 (173)
288 2pbr_A DTMP kinase, thymidylat 97.3 0.00025 8.5E-09 55.6 4.7 22 157-178 3-24 (195)
289 2p67_A LAO/AO transport system 97.3 0.00014 4.8E-09 63.2 3.3 32 148-179 50-81 (341)
290 3thx_A DNA mismatch repair pro 97.3 0.00033 1.1E-08 68.5 6.3 24 151-174 659-682 (934)
291 1odf_A YGR205W, hypothetical 3 97.2 0.00012 4E-09 62.4 2.7 28 153-180 30-57 (290)
292 3sr0_A Adenylate kinase; phosp 97.2 0.00014 4.9E-09 58.7 3.0 25 157-181 3-27 (206)
293 2pt5_A Shikimate kinase, SK; a 97.2 0.00019 6.6E-09 55.1 3.5 25 157-181 3-27 (168)
294 3tlx_A Adenylate kinase 2; str 97.2 0.00017 5.8E-09 59.5 3.3 28 153-180 28-55 (243)
295 2px0_A Flagellar biosynthesis 97.2 9.1E-05 3.1E-09 63.2 1.7 28 153-180 104-131 (296)
296 1ex7_A Guanylate kinase; subst 97.2 0.00022 7.5E-09 56.7 3.8 24 156-179 3-26 (186)
297 1e69_A Chromosome segregation 97.2 0.00038 1.3E-08 59.9 5.5 23 156-178 26-48 (322)
298 2wwf_A Thymidilate kinase, put 97.2 0.00015 5.3E-09 57.8 2.9 26 154-179 10-35 (212)
299 1udx_A The GTP-binding protein 97.2 0.00013 4.5E-09 65.2 2.6 30 148-177 151-180 (416)
300 3r20_A Cytidylate kinase; stru 97.2 0.00018 6.3E-09 59.2 3.2 26 155-180 10-35 (233)
301 1f2t_A RAD50 ABC-ATPase; DNA d 97.2 0.00011 3.7E-09 56.2 1.7 21 157-177 26-46 (149)
302 1ukz_A Uridylate kinase; trans 97.2 0.00023 8E-09 56.5 3.8 26 155-180 16-41 (203)
303 3be4_A Adenylate kinase; malar 97.2 0.00018 6E-09 58.2 2.9 26 155-180 6-31 (217)
304 1nn5_A Similar to deoxythymidy 97.2 0.00016 5.6E-09 57.7 2.6 27 153-179 8-34 (215)
305 2ffh_A Protein (FFH); SRP54, s 97.2 0.00041 1.4E-08 62.1 5.4 58 130-189 76-133 (425)
306 1uf9_A TT1252 protein; P-loop, 97.1 0.00028 9.7E-09 55.8 3.9 23 155-177 9-31 (203)
307 1v5w_A DMC1, meiotic recombina 97.1 0.0017 5.9E-08 56.3 9.1 28 150-177 118-145 (343)
308 4eaq_A DTMP kinase, thymidylat 97.1 0.00023 7.8E-09 58.3 3.2 28 153-180 25-52 (229)
309 1f6b_A SAR1; gtpases, N-termin 97.1 0.00039 1.3E-08 55.1 4.4 21 156-176 27-47 (198)
310 1e4v_A Adenylate kinase; trans 97.1 0.00024 8.4E-09 57.1 3.2 25 157-181 3-27 (214)
311 1q3t_A Cytidylate kinase; nucl 97.1 0.00026 8.9E-09 58.0 3.4 28 152-179 14-41 (236)
312 1ak2_A Adenylate kinase isoenz 97.1 0.00027 9.1E-09 57.8 3.5 26 155-180 17-42 (233)
313 1gtv_A TMK, thymidylate kinase 97.1 7.6E-05 2.6E-09 59.7 0.2 24 157-180 3-26 (214)
314 3ake_A Cytidylate kinase; CMP 97.1 0.00027 9.1E-09 56.2 3.4 26 156-181 4-29 (208)
315 2www_A Methylmalonic aciduria 97.1 0.00014 4.8E-09 63.4 1.7 28 154-181 74-101 (349)
316 1w1w_A Structural maintenance 97.1 0.0002 6.9E-09 64.0 2.7 31 151-181 23-53 (430)
317 3ux8_A Excinuclease ABC, A sub 97.1 9.2E-05 3.1E-09 70.1 0.2 28 148-175 342-369 (670)
318 3qf7_A RAD50; ABC-ATPase, ATPa 97.0 0.00015 5.2E-09 63.6 1.4 20 157-176 26-45 (365)
319 1vht_A Dephospho-COA kinase; s 97.0 0.00037 1.3E-08 56.1 3.6 22 155-176 5-26 (218)
320 2z43_A DNA repair and recombin 97.0 0.0012 4.2E-08 56.7 7.1 29 150-178 103-131 (324)
321 2qag_C Septin-7; cell cycle, c 97.0 0.00026 8.7E-09 63.4 2.8 46 116-179 11-56 (418)
322 2xb4_A Adenylate kinase; ATP-b 97.0 0.0003 1E-08 57.1 3.1 24 157-180 3-26 (223)
323 2o5v_A DNA replication and rep 97.0 0.00016 5.5E-09 63.4 1.3 26 150-176 23-48 (359)
324 2wji_A Ferrous iron transport 97.0 0.00034 1.2E-08 53.6 2.8 22 156-177 5-26 (165)
325 2qtf_A Protein HFLX, GTP-bindi 97.0 0.0011 3.9E-08 58.0 6.4 23 157-179 182-204 (364)
326 1np6_A Molybdopterin-guanine d 97.0 0.00036 1.2E-08 54.9 2.8 35 155-189 7-44 (174)
327 1wb9_A DNA mismatch repair pro 97.0 0.00032 1.1E-08 67.6 3.0 26 152-177 605-630 (800)
328 2zr9_A Protein RECA, recombina 97.0 0.00029 9.9E-09 61.5 2.4 30 149-178 56-85 (349)
329 2qmh_A HPR kinase/phosphorylas 96.9 0.00044 1.5E-08 55.6 3.2 25 154-178 34-58 (205)
330 1j8m_F SRP54, signal recogniti 96.9 0.00043 1.5E-08 59.0 3.4 57 130-187 74-131 (297)
331 1uj2_A Uridine-cytidine kinase 96.9 0.00034 1.2E-08 57.9 2.6 26 155-180 23-48 (252)
332 2gj8_A MNME, tRNA modification 96.9 0.00038 1.3E-08 53.9 2.7 25 154-178 4-28 (172)
333 3crm_A TRNA delta(2)-isopenten 96.9 0.00041 1.4E-08 59.9 3.1 26 155-180 6-31 (323)
334 2grj_A Dephospho-COA kinase; T 96.9 0.00045 1.6E-08 55.1 3.0 24 157-180 15-38 (192)
335 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.00042 1.4E-08 57.7 2.9 23 155-177 5-27 (260)
336 2zej_A Dardarin, leucine-rich 96.9 0.00043 1.5E-08 54.0 2.7 22 156-177 4-25 (184)
337 1m2o_B GTP-binding protein SAR 96.9 0.0008 2.7E-08 52.8 4.1 21 156-176 25-45 (190)
338 2r6a_A DNAB helicase, replicat 96.9 0.00062 2.1E-08 61.4 3.8 31 149-179 198-228 (454)
339 3thx_B DNA mismatch repair pro 96.9 0.0003 1E-08 68.7 1.8 28 149-176 668-695 (918)
340 3upu_A ATP-dependent DNA helic 96.9 0.00083 2.8E-08 60.6 4.6 55 111-178 15-69 (459)
341 3qks_A DNA double-strand break 96.8 0.00034 1.1E-08 56.2 1.7 21 157-177 26-46 (203)
342 2ohf_A Protein OLA1, GTP-bindi 96.8 0.0012 4E-08 58.6 5.2 25 153-177 21-45 (396)
343 3tqf_A HPR(Ser) kinase; transf 96.8 0.0005 1.7E-08 54.0 2.4 24 153-176 15-38 (181)
344 3qkt_A DNA double-strand break 96.8 0.00033 1.1E-08 60.8 1.4 19 157-175 26-44 (339)
345 1ewq_A DNA mismatch repair pro 96.8 0.00046 1.6E-08 66.2 2.6 25 154-178 576-600 (765)
346 3kl4_A SRP54, signal recogniti 96.8 0.00066 2.3E-08 60.9 3.3 28 154-181 97-124 (433)
347 2wjg_A FEOB, ferrous iron tran 96.8 0.00061 2.1E-08 52.9 2.8 22 156-177 9-30 (188)
348 2ged_A SR-beta, signal recogni 96.8 0.0014 4.8E-08 51.1 4.7 25 154-178 48-72 (193)
349 2zts_A Putative uncharacterize 96.7 0.00062 2.1E-08 55.5 2.6 26 150-175 26-51 (251)
350 2h92_A Cytidylate kinase; ross 96.7 0.00091 3.1E-08 53.7 3.4 26 155-180 4-29 (219)
351 1ltq_A Polynucleotide kinase; 96.7 0.00069 2.4E-08 57.2 2.8 23 155-177 3-25 (301)
352 3gmt_A Adenylate kinase; ssgci 96.7 0.00073 2.5E-08 55.5 2.8 26 156-181 10-35 (230)
353 1a7j_A Phosphoribulokinase; tr 96.7 0.00056 1.9E-08 58.1 2.1 34 156-189 7-43 (290)
354 1mky_A Probable GTP-binding pr 96.7 0.0012 4.1E-08 59.2 4.4 23 156-178 182-204 (439)
355 3d3q_A TRNA delta(2)-isopenten 96.7 0.0012 4E-08 57.4 4.0 25 155-179 8-32 (340)
356 2vf7_A UVRA2, excinuclease ABC 96.7 0.00033 1.1E-08 67.8 0.4 31 148-178 517-548 (842)
357 2f6r_A COA synthase, bifunctio 96.7 0.00085 2.9E-08 56.6 3.0 21 156-176 77-97 (281)
358 3dzd_A Transcriptional regulat 96.6 0.0014 4.9E-08 57.4 4.4 64 156-219 154-235 (368)
359 1xjc_A MOBB protein homolog; s 96.6 0.00076 2.6E-08 52.7 2.4 33 156-188 6-41 (169)
360 3zvl_A Bifunctional polynucleo 96.6 0.0012 4.2E-08 58.8 4.0 25 155-179 259-283 (416)
361 3a8t_A Adenylate isopentenyltr 96.6 0.00087 3E-08 58.1 2.8 25 155-179 41-65 (339)
362 3bh0_A DNAB-like replicative h 96.6 0.0015 5.2E-08 55.9 4.3 29 149-177 63-91 (315)
363 2o8b_B DNA mismatch repair pro 96.6 0.00082 2.8E-08 66.5 2.7 24 154-178 789-812 (1022)
364 3k53_A Ferrous iron transport 96.6 0.00093 3.2E-08 55.8 2.6 24 155-178 4-27 (271)
365 2dyk_A GTP-binding protein; GT 96.6 0.001 3.4E-08 50.1 2.5 23 156-178 3-25 (161)
366 2nzj_A GTP-binding protein REM 96.5 0.0012 4E-08 50.4 2.8 23 156-178 6-28 (175)
367 1u94_A RECA protein, recombina 96.5 0.00095 3.3E-08 58.4 2.5 30 149-178 58-87 (356)
368 2i1q_A DNA repair and recombin 96.5 0.00086 3E-08 57.5 2.2 29 149-177 93-121 (322)
369 3lxx_A GTPase IMAP family memb 96.5 0.0014 4.7E-08 53.5 3.2 24 156-179 31-54 (239)
370 1z2a_A RAS-related protein RAB 96.5 0.0011 3.9E-08 50.0 2.6 22 156-177 7-28 (168)
371 3q72_A GTP-binding protein RAD 96.5 0.0011 3.6E-08 50.3 2.3 23 156-178 4-26 (166)
372 1kao_A RAP2A; GTP-binding prot 96.5 0.0012 4.2E-08 49.6 2.6 22 156-177 5-26 (167)
373 2v3c_C SRP54, signal recogniti 96.5 0.0028 9.5E-08 56.9 5.3 25 155-179 100-124 (432)
374 1ega_A Protein (GTP-binding pr 96.5 0.0012 4.1E-08 56.2 2.8 22 156-177 10-31 (301)
375 2lkc_A Translation initiation 96.5 0.0016 5.6E-08 49.8 3.3 23 154-176 8-30 (178)
376 1ny5_A Transcriptional regulat 96.5 0.0063 2.2E-07 53.6 7.5 65 155-219 161-244 (387)
377 2erx_A GTP-binding protein DI- 96.5 0.0014 4.8E-08 49.7 2.8 21 156-176 5-25 (172)
378 3io5_A Recombination and repai 96.5 0.0014 4.9E-08 56.4 3.1 28 149-177 24-51 (333)
379 3q85_A GTP-binding protein REM 96.5 0.0014 4.8E-08 49.7 2.8 21 157-177 5-25 (169)
380 4akg_A Glutathione S-transfera 96.5 0.0016 5.5E-08 69.9 4.0 65 154-219 645-710 (2695)
381 2qen_A Walker-type ATPase; unk 96.5 0.0033 1.1E-07 53.5 5.4 24 155-178 32-55 (350)
382 4ag6_A VIRB4 ATPase, type IV s 96.4 0.0014 4.9E-08 57.6 3.1 33 154-186 35-67 (392)
383 2ce2_X GTPase HRAS; signaling 96.4 0.0013 4.4E-08 49.4 2.4 22 156-177 5-26 (166)
384 3foz_A TRNA delta(2)-isopenten 96.4 0.0015 5E-08 56.1 2.9 26 154-179 10-35 (316)
385 1u8z_A RAS-related protein RAL 96.4 0.0014 4.8E-08 49.4 2.6 22 156-177 6-27 (168)
386 1z0j_A RAB-22, RAS-related pro 96.4 0.0015 5E-08 49.5 2.6 23 156-178 8-30 (170)
387 1svi_A GTP-binding protein YSX 96.4 0.0021 7.3E-08 50.1 3.6 23 155-177 24-46 (195)
388 3iev_A GTP-binding protein ERA 96.4 0.0014 4.9E-08 55.9 2.8 26 152-177 7-33 (308)
389 3tw8_B RAS-related protein RAB 96.4 0.0014 5E-08 50.1 2.6 22 156-177 11-32 (181)
390 1wms_A RAB-9, RAB9, RAS-relate 96.4 0.0015 5.1E-08 50.0 2.6 22 156-177 9-30 (177)
391 1ek0_A Protein (GTP-binding pr 96.4 0.0015 5.1E-08 49.4 2.6 22 156-177 5-26 (170)
392 1g16_A RAS-related protein SEC 96.4 0.0014 4.9E-08 49.6 2.4 22 156-177 5-26 (170)
393 1z08_A RAS-related protein RAB 96.4 0.0016 5.3E-08 49.4 2.7 22 156-177 8-29 (170)
394 3exa_A TRNA delta(2)-isopenten 96.4 0.0016 5.5E-08 55.9 2.9 24 156-179 5-28 (322)
395 1ky3_A GTP-binding protein YPT 96.4 0.0016 5.5E-08 49.9 2.6 22 156-177 10-31 (182)
396 1ko7_A HPR kinase/phosphatase; 96.3 0.0026 8.9E-08 54.6 4.0 35 153-187 143-181 (314)
397 3pqc_A Probable GTP-binding pr 96.3 0.0021 7.2E-08 49.9 3.3 23 156-178 25-47 (195)
398 1c1y_A RAS-related protein RAP 96.3 0.0016 5.6E-08 49.1 2.6 22 156-177 5-26 (167)
399 2fn4_A P23, RAS-related protei 96.3 0.002 7E-08 49.2 3.1 22 156-177 11-32 (181)
400 1nrj_B SR-beta, signal recogni 96.3 0.0019 6.6E-08 51.5 3.0 23 156-178 14-36 (218)
401 2hxs_A RAB-26, RAS-related pro 96.3 0.0019 6.6E-08 49.4 2.9 22 156-177 8-29 (178)
402 1r2q_A RAS-related protein RAB 96.3 0.0018 6E-08 49.0 2.6 21 156-176 8-28 (170)
403 1upt_A ARL1, ADP-ribosylation 96.3 0.0021 7.3E-08 48.7 3.0 22 155-176 8-29 (171)
404 3vkg_A Dynein heavy chain, cyt 96.3 0.015 5.2E-07 63.3 10.3 129 100-239 1254-1407(3245)
405 3b1v_A Ferrous iron uptake tra 96.3 0.002 6.8E-08 54.1 2.8 22 156-177 5-26 (272)
406 1fzq_A ADP-ribosylation factor 96.3 0.0017 6E-08 50.4 2.3 23 155-177 17-39 (181)
407 3bc1_A RAS-related protein RAB 96.3 0.0019 6.7E-08 49.9 2.6 21 156-176 13-33 (195)
408 2cxx_A Probable GTP-binding pr 96.2 0.0019 6.4E-08 50.0 2.5 22 156-177 3-24 (190)
409 4dsu_A GTPase KRAS, isoform 2B 96.2 0.002 6.9E-08 49.7 2.6 22 156-177 6-27 (189)
410 3iby_A Ferrous iron transport 96.2 0.002 6.9E-08 53.5 2.7 22 156-177 3-24 (256)
411 3auy_A DNA double-strand break 96.2 0.00095 3.3E-08 58.5 0.8 27 150-176 20-47 (371)
412 3clv_A RAB5 protein, putative; 96.2 0.0027 9.2E-08 49.4 3.3 22 156-177 9-30 (208)
413 1r8s_A ADP-ribosylation factor 96.2 0.0021 7.1E-08 48.5 2.6 20 157-176 3-22 (164)
414 4a1f_A DNAB helicase, replicat 96.2 0.0028 9.5E-08 55.0 3.6 31 148-178 40-70 (338)
415 2y8e_A RAB-protein 6, GH09086P 96.2 0.002 6.8E-08 49.2 2.4 21 156-176 16-36 (179)
416 2b6h_A ADP-ribosylation factor 96.2 0.0029 1E-07 49.6 3.5 22 155-176 30-51 (192)
417 2oil_A CATX-8, RAS-related pro 96.2 0.0021 7.1E-08 50.2 2.6 22 156-177 27-48 (193)
418 3t1o_A Gliding protein MGLA; G 96.2 0.0023 7.7E-08 49.8 2.7 23 156-178 16-38 (198)
419 1xp8_A RECA protein, recombina 96.2 0.0018 6.3E-08 56.8 2.4 30 149-178 69-98 (366)
420 1moz_A ARL1, ADP-ribosylation 96.2 0.0022 7.4E-08 49.4 2.5 23 154-176 18-40 (183)
421 2efe_B Small GTP-binding prote 96.2 0.0024 8.3E-08 49.0 2.7 22 156-177 14-35 (181)
422 4ad8_A DNA repair protein RECN 96.2 0.0011 3.8E-08 60.7 0.8 30 148-177 53-83 (517)
423 1z0f_A RAB14, member RAS oncog 96.2 0.0023 8E-08 48.8 2.6 22 156-177 17-38 (179)
424 2ocp_A DGK, deoxyguanosine kin 96.1 0.0023 7.9E-08 52.3 2.6 25 155-179 3-27 (241)
425 2a9k_A RAS-related protein RAL 96.1 0.0024 8.3E-08 49.1 2.6 22 156-177 20-41 (187)
426 3con_A GTPase NRAS; structural 96.1 0.0025 8.5E-08 49.5 2.6 22 156-177 23-44 (190)
427 2g6b_A RAS-related protein RAB 96.1 0.0025 8.6E-08 48.8 2.6 22 156-177 12-33 (180)
428 3v9p_A DTMP kinase, thymidylat 96.1 0.0024 8.1E-08 52.3 2.5 26 154-179 25-50 (227)
429 2bme_A RAB4A, RAS-related prot 96.1 0.0024 8.1E-08 49.3 2.4 22 156-177 12-33 (186)
430 2atv_A RERG, RAS-like estrogen 96.1 0.0027 9.2E-08 49.8 2.8 23 155-177 29-51 (196)
431 1m7b_A RND3/RHOE small GTP-bin 96.1 0.0024 8.2E-08 49.5 2.4 22 156-177 9-30 (184)
432 4edh_A DTMP kinase, thymidylat 96.1 0.0024 8.3E-08 51.7 2.5 26 154-179 6-31 (213)
433 1ksh_A ARF-like protein 2; sma 96.1 0.0027 9.3E-08 49.1 2.6 23 155-177 19-41 (186)
434 3cmu_A Protein RECA, recombina 96.1 0.0031 1.1E-07 65.9 3.7 31 150-180 728-758 (2050)
435 1p5z_B DCK, deoxycytidine kina 96.1 0.0017 5.8E-08 53.9 1.5 25 155-179 25-49 (263)
436 2gf9_A RAS-related protein RAB 96.1 0.0027 9.4E-08 49.3 2.6 22 156-177 24-45 (189)
437 2p5s_A RAS and EF-hand domain 96.1 0.0028 9.6E-08 49.9 2.6 23 155-177 29-51 (199)
438 3dm5_A SRP54, signal recogniti 96.0 0.0053 1.8E-07 55.1 4.7 26 154-179 100-125 (443)
439 3eph_A TRNA isopentenyltransfe 96.0 0.0025 8.7E-08 56.5 2.5 26 155-180 3-28 (409)
440 3fdi_A Uncharacterized protein 96.0 0.0035 1.2E-07 50.1 3.1 27 156-182 8-34 (201)
441 1zbd_A Rabphilin-3A; G protein 96.0 0.0031 1.1E-07 49.6 2.8 23 155-177 9-31 (203)
442 3tkl_A RAS-related protein RAB 96.0 0.0029 9.8E-08 49.3 2.6 22 156-177 18-39 (196)
443 3ihw_A Centg3; RAS, centaurin, 96.0 0.003 1E-07 49.2 2.7 20 157-176 23-42 (184)
444 3lxw_A GTPase IMAP family memb 96.0 0.003 1E-07 52.0 2.8 23 156-178 23-45 (247)
445 3kkq_A RAS-related protein M-R 96.0 0.003 1E-07 48.7 2.6 22 156-177 20-41 (183)
446 2fg5_A RAB-22B, RAS-related pr 96.0 0.0028 9.7E-08 49.5 2.5 22 156-177 25-46 (192)
447 2dy1_A Elongation factor G; tr 96.0 0.0026 8.8E-08 60.2 2.6 32 149-180 4-35 (665)
448 1mh1_A RAC1; GTP-binding, GTPa 96.0 0.003 1E-07 48.6 2.6 21 156-176 7-27 (186)
449 3t34_A Dynamin-related protein 96.0 0.0026 8.9E-08 55.4 2.5 22 156-177 36-57 (360)
450 2aka_B Dynamin-1; fusion prote 96.0 0.005 1.7E-07 51.6 4.1 23 156-178 28-50 (299)
451 1vg8_A RAS-related protein RAB 96.0 0.003 1E-07 49.7 2.6 22 156-177 10-31 (207)
452 3a1s_A Iron(II) transport prot 96.0 0.0032 1.1E-07 52.3 2.8 22 156-177 7-28 (258)
453 4bas_A ADP-ribosylation factor 96.0 0.0029 1E-07 49.3 2.4 23 155-177 18-40 (199)
454 2bov_A RAla, RAS-related prote 96.0 0.0031 1.1E-07 49.5 2.6 22 156-177 16-37 (206)
455 3cbq_A GTP-binding protein REM 96.0 0.0024 8.3E-08 50.3 1.9 22 156-177 25-46 (195)
456 2ygr_A Uvrabc system protein A 96.0 0.0013 4.4E-08 64.5 0.3 28 148-175 662-689 (993)
457 3bwd_D RAC-like GTP-binding pr 96.0 0.0037 1.3E-07 48.0 2.9 23 155-177 9-31 (182)
458 2wsm_A Hydrogenase expression/ 96.0 0.0031 1.1E-07 50.4 2.5 24 155-178 31-54 (221)
459 1z06_A RAS-related protein RAB 96.0 0.0033 1.1E-07 48.9 2.6 21 156-176 22-42 (189)
460 2q6t_A DNAB replication FORK h 96.0 0.004 1.4E-07 55.9 3.4 30 149-178 195-224 (444)
461 1jal_A YCHF protein; nucleotid 96.0 0.0046 1.6E-07 54.1 3.7 21 156-176 4-24 (363)
462 3dz8_A RAS-related protein RAB 95.9 0.0031 1.1E-07 49.2 2.4 23 156-178 25-47 (191)
463 1x3s_A RAS-related protein RAB 95.9 0.0034 1.2E-07 48.7 2.6 22 156-177 17-38 (195)
464 2gf0_A GTP-binding protein DI- 95.9 0.0033 1.1E-07 49.1 2.5 21 156-176 10-30 (199)
465 3t5g_A GTP-binding protein RHE 95.9 0.0033 1.1E-07 48.3 2.4 21 156-176 8-28 (181)
466 3t5d_A Septin-7; GTP-binding p 95.9 0.0031 1.1E-07 52.7 2.4 21 157-177 11-31 (274)
467 3oes_A GTPase rhebl1; small GT 95.9 0.0033 1.1E-07 49.5 2.4 23 155-177 25-47 (201)
468 3tmk_A Thymidylate kinase; pho 95.9 0.0039 1.3E-07 50.6 2.9 28 154-181 5-32 (216)
469 1zd9_A ADP-ribosylation factor 95.9 0.0036 1.2E-07 48.8 2.6 21 156-176 24-44 (188)
470 2a5j_A RAS-related protein RAB 95.9 0.0036 1.2E-07 48.8 2.6 21 157-177 24-44 (191)
471 2bcg_Y Protein YP2, GTP-bindin 95.9 0.0034 1.2E-07 49.5 2.4 22 156-177 10-31 (206)
472 1zj6_A ADP-ribosylation factor 95.9 0.0038 1.3E-07 48.4 2.7 22 155-176 17-38 (187)
473 2o52_A RAS-related protein RAB 95.9 0.0038 1.3E-07 49.2 2.7 22 156-177 27-48 (200)
474 3cph_A RAS-related protein SEC 95.9 0.0037 1.3E-07 49.4 2.6 23 155-177 21-43 (213)
475 2il1_A RAB12; G-protein, GDP, 95.9 0.0036 1.2E-07 49.0 2.5 22 156-177 28-49 (192)
476 3reg_A RHO-like small GTPase; 95.9 0.0038 1.3E-07 48.8 2.6 22 156-177 25-46 (194)
477 3lv8_A DTMP kinase, thymidylat 95.9 0.0037 1.3E-07 51.4 2.6 26 154-179 27-52 (236)
478 2qu8_A Putative nucleolar GTP- 95.9 0.0043 1.5E-07 50.1 2.9 23 155-177 30-52 (228)
479 2cjw_A GTP-binding protein GEM 95.9 0.0038 1.3E-07 49.0 2.6 21 156-176 8-28 (192)
480 1knx_A Probable HPR(Ser) kinas 95.9 0.0037 1.3E-07 53.6 2.6 24 153-176 146-169 (312)
481 3c5c_A RAS-like protein 12; GD 95.9 0.0039 1.3E-07 48.6 2.6 21 156-176 23-43 (187)
482 2xtp_A GTPase IMAP family memb 95.8 0.004 1.4E-07 51.3 2.8 22 156-177 24-45 (260)
483 2ew1_A RAS-related protein RAB 95.8 0.0037 1.3E-07 49.6 2.4 22 156-177 28-49 (201)
484 4b3f_X DNA-binding protein smu 95.8 0.008 2.7E-07 56.5 5.0 22 157-178 208-230 (646)
485 3p32_A Probable GTPase RV1496/ 95.8 0.0066 2.2E-07 52.8 4.2 24 155-178 80-103 (355)
486 2r6f_A Excinuclease ABC subuni 95.8 0.0013 4.4E-08 64.3 -0.4 28 148-175 644-671 (972)
487 2h57_A ADP-ribosylation factor 95.8 0.0031 1.1E-07 49.1 1.9 23 156-178 23-45 (190)
488 2f7s_A C25KG, RAS-related prot 95.8 0.0044 1.5E-07 49.3 2.8 22 156-177 27-48 (217)
489 2h17_A ADP-ribosylation factor 95.8 0.0035 1.2E-07 48.4 2.2 22 156-177 23-44 (181)
490 3i8s_A Ferrous iron transport 95.8 0.0041 1.4E-07 52.1 2.7 22 156-177 5-26 (274)
491 2iwr_A Centaurin gamma 1; ANK 95.8 0.0035 1.2E-07 48.0 2.1 22 156-177 9-30 (178)
492 2fu5_C RAS-related protein RAB 95.8 0.0028 9.6E-08 48.8 1.5 23 155-177 9-31 (183)
493 1gwn_A RHO-related GTP-binding 95.8 0.0039 1.3E-07 49.6 2.4 22 156-177 30-51 (205)
494 2orw_A Thymidine kinase; TMTK, 95.8 0.0041 1.4E-07 49.0 2.5 22 155-176 4-25 (184)
495 2q3h_A RAS homolog gene family 95.8 0.0046 1.6E-07 48.5 2.8 22 156-177 22-43 (201)
496 1jwy_B Dynamin A GTPase domain 95.8 0.008 2.7E-07 50.9 4.3 23 156-178 26-48 (315)
497 2fv8_A H6, RHO-related GTP-bin 95.7 0.0043 1.5E-07 49.1 2.5 23 155-177 26-48 (207)
498 2j1l_A RHO-related GTP-binding 95.7 0.0047 1.6E-07 49.3 2.7 22 156-177 36-57 (214)
499 2x77_A ADP-ribosylation factor 95.7 0.0044 1.5E-07 48.1 2.4 23 154-176 22-44 (189)
500 2fh5_B SR-beta, signal recogni 95.7 0.0046 1.6E-07 49.1 2.6 22 156-177 9-30 (214)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=5.5e-21 Score=170.04 Aligned_cols=129 Identities=24% Similarity=0.309 Sum_probs=111.2
Q ss_pred CCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC----
Q psy1371 114 KRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE---- 189 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~---- 189 (244)
.+.++|+||.+-.+.++.+.+.|..++.++++|.++|+++++|++|+||||||||++++++|+.++.+...+..+.
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk 221 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQK 221 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhcc
Confidence 3568899998888888889889999999999999999999999999999999999999999999999988888765
Q ss_pred -CCCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCcCcc----cHHHHHHHHHHhhhc
Q psy1371 190 -RGLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREESSQ----GLEDIDAAFVTREES 242 (244)
Q Consensus 190 -~~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~~~~----~~~~~~~~~l~~~~~ 242 (244)
.+.+++.+|+.|..+. ++|++|+||+|+++..|..... ...+....+|..+|.
T Consensus 222 ~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 281 (405)
T 4b4t_J 222 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDG 281 (405)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhc
Confidence 4556788999998875 6899999999999988754332 346788889988874
No 2
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.6e-20 Score=168.96 Aligned_cols=129 Identities=20% Similarity=0.288 Sum_probs=111.1
Q ss_pred CCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC----
Q psy1371 114 KRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE---- 189 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~---- 189 (244)
.+..+|+||.+....++.+.+.|..++.++++|.++|+++++|++||||||||||++++++|+.++.+...++.+.
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~ 254 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQM 254 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSS
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhc
Confidence 4568899999999889999999999999999999999999999999999999999999999999999988888765
Q ss_pred -CCCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCcCcc----cHHHHHHHHHHhhhc
Q psy1371 190 -RGLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREESSQ----GLEDIDAAFVTREES 242 (244)
Q Consensus 190 -~~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~~~~----~~~~~~~~~l~~~~~ 242 (244)
.+.+++.+|..|..+. ++|++|+||+|+++..|..... ...+....+|..+|.
T Consensus 255 ~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg 314 (434)
T 4b4t_M 255 YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDG 314 (434)
T ss_dssp CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhc
Confidence 3556678899988775 6899999999999998865433 245677888888764
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.81 E-value=3.6e-20 Score=165.50 Aligned_cols=129 Identities=21% Similarity=0.297 Sum_probs=110.3
Q ss_pred CCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC----
Q psy1371 114 KRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE---- 189 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~---- 189 (244)
.+.++|+||..-.+.++.+.+.+..++.++++|..+++++++|++||||||||||++++++|+.++.+...++.++
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk 255 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQK 255 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCS
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhc
Confidence 4568899998888888899999999999999999999999999999999999999999999999999988888655
Q ss_pred -CCCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCcCcc----cHHHHHHHHHHhhhc
Q psy1371 190 -RGLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREESSQ----GLEDIDAAFVTREES 242 (244)
Q Consensus 190 -~~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~~~~----~~~~~~~~~l~~~~~ 242 (244)
.+.+++.+|..|..+. ++|++|+||+|+++..|..... ...+....+|..+|.
T Consensus 256 ~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg 315 (437)
T 4b4t_I 256 YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG 315 (437)
T ss_dssp SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhC
Confidence 3556678899988775 6899999999999998854332 346777888887763
No 4
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.81 E-value=4.9e-20 Score=165.69 Aligned_cols=129 Identities=24% Similarity=0.334 Sum_probs=111.2
Q ss_pred CCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC----
Q psy1371 114 KRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE---- 189 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~---- 189 (244)
.+.++|+||.+-...++.+.+.+..++.++++|..+|+++++|++|+||||||||++++++|+.++.+...+....
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~ 245 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHK 245 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCS
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhcc
Confidence 4567899999888888999999999999999999999999999999999999999999999999999988888765
Q ss_pred -CCCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCcCc----ccHHHHHHHHHHhhhc
Q psy1371 190 -RGLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREESS----QGLEDIDAAFVTREES 242 (244)
Q Consensus 190 -~~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~~~----~~~~~~~~~~l~~~~~ 242 (244)
.+.+++.+++.|..+. ++|++|+||+|.++..|.... ....++.+.||..+|.
T Consensus 246 ~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg 305 (428)
T 4b4t_K 246 YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDG 305 (428)
T ss_dssp SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhC
Confidence 3456678999998775 689999999999998874332 2356888999988874
No 5
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.81 E-value=4.9e-20 Score=165.99 Aligned_cols=129 Identities=19% Similarity=0.295 Sum_probs=110.2
Q ss_pred CCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC----
Q psy1371 114 KRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE---- 189 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~---- 189 (244)
.+.++|+||.+-.+.++.+.+.|..++.++++|..+|+++++|++||||||||||++++++|+.++.+...+..++
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk 254 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDK 254 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCS
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccc
Confidence 4567899999888888889999999999999999999999999999999999999999999999999988888765
Q ss_pred -CCCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCcCc----ccHHHHHHHHHHhhhc
Q psy1371 190 -RGLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREESS----QGLEDIDAAFVTREES 242 (244)
Q Consensus 190 -~~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~~~----~~~~~~~~~~l~~~~~ 242 (244)
.+.+++.++..|..+. ++|++|+||+|+++..|.... ....+....||..+|.
T Consensus 255 ~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 314 (437)
T 4b4t_L 255 YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDG 314 (437)
T ss_dssp SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHS
T ss_pred cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhc
Confidence 3445677888888775 689999999999998875432 2356778889988874
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.80 E-value=9.2e-20 Score=164.24 Aligned_cols=129 Identities=22% Similarity=0.299 Sum_probs=109.6
Q ss_pred CCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC----
Q psy1371 114 KRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE---- 189 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~---- 189 (244)
.+.++|+||.+-...++.+.+.|..++.++++|..+|+++++|++|+||||||||++++++|+.++.+...+....
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk 282 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQK 282 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCC
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcc
Confidence 4568999999888888888888999999999999999999999999999999999999999999999988888655
Q ss_pred -CCCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCcCcc----cHHHHHHHHHHhhhc
Q psy1371 190 -RGLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREESSQ----GLEDIDAAFVTREES 242 (244)
Q Consensus 190 -~~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~~~~----~~~~~~~~~l~~~~~ 242 (244)
.+.+++.+|..|..+. ++|++|+||+|.++..|..... ...+....+|..+|.
T Consensus 283 ~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 342 (467)
T 4b4t_H 283 YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDG 342 (467)
T ss_dssp SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhc
Confidence 3556778999988775 6899999999999988854432 245667778877763
No 7
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.75 E-value=1.2e-19 Score=170.31 Aligned_cols=178 Identities=13% Similarity=0.110 Sum_probs=125.2
Q ss_pred chhHHHhhhhHHHHhhhcccccCeeecCCCCCcchhhHhhhhcCCCCccchhhhhhhHHHHHHHHHHHHHHHHHhhcCce
Q psy1371 18 AGFGLFGLGAGAAILRKGKFRPGRESLPPPNVSMPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKARTLALKQYEGKT 97 (244)
Q Consensus 18 ~~~~~~~~~~g~~~v~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 97 (244)
.+..++++++|++++..|.+++| .+++++.+...+ ..|+..+...+..+.....-.++..+.... +...
T Consensus 272 ~~~~~~~~~~g~~l~~~g~ls~g--------~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~--~~~~ 340 (598)
T 3qf4_B 272 NLGFALISGFGGWLALKDIITVG--------TIATFIGYSRQF-TRPLNELSNQFNMIQMALASAERIFEILDL--EEEK 340 (598)
T ss_dssp HHHHHHHHHHHHHHGGGTSSCHH--------HHHHHHTTTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--CCCC
T ss_pred HHHHHHHHHHHHHHHHcCCCCHH--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCCC
Confidence 34556778899999999999999 888888888777 777555554333333322222221111111 0000
Q ss_pred EEEecCCCceeecCCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcc
Q psy1371 98 VMYTALGSEWRPFGHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
. ...-.......+.+++++|++.|+....+++++ ++.+++|+.++++||||||||||+++|+|+
T Consensus 341 ---~--~~~~~~~~~~~~~i~~~~v~~~y~~~~~~l~~i-----------sl~i~~G~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 341 ---D--DPDAVELREVRGEIEFKNVWFSYDKKKPVLKDI-----------TFHIKPGQKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp ---C--CSSCCCCCSCCCCEEEEEEECCSSSSSCSCCSE-----------EEECCTTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred ---C--CCCCCCCCCCCCeEEEEEEEEECCCCCccccce-----------EEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 0 000000112234578999999996544567777 888999999999999999999999999999
Q ss_pred cCCCeEEEEeCCCC---CCHHHHHHHhhhcCCCCceehhhH-hhhhccc
Q psy1371 178 LEFGICVLNLSERG---LTDDRLNHLLSVAPQNSIILLEDI-DAAFVTR 222 (244)
Q Consensus 178 ~~~~~g~i~~~~~~---~~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r 222 (244)
++|+.|.+.++|.+ .+...+|+.+++++|++.+|-+++ |++...+
T Consensus 405 ~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~ 453 (598)
T 3qf4_B 405 YDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGN 453 (598)
T ss_dssp SCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSS
T ss_pred cCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCC
Confidence 99999999999944 455778999999999999997777 7776543
No 8
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.75 E-value=3.1e-19 Score=167.09 Aligned_cols=179 Identities=13% Similarity=0.072 Sum_probs=128.8
Q ss_pred ccchhHHHhhhhHHHHhhhcccccCeeecCCCCCcchhhHhhhhcCCCCccchhhhhhhHHHHHHHHHHHHHHHHHhhcC
Q psy1371 16 FGAGFGLFGLGAGAAILRKGKFRPGRESLPPPNVSMPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKARTLALKQYEG 95 (244)
Q Consensus 16 ~~~~~~~~~~~~g~~~v~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 95 (244)
+..+..++++++|+|++.+|.+|+| .+++++.+...+ ..|+..+...+..+.+....+++..+......+.
T Consensus 258 ~~~~~~~~i~~~g~~~v~~g~lt~g--------~l~~~~~~~~~~-~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~ 328 (582)
T 3b5x_A 258 IASLALFAVLFLASVDSIRAELTPG--------TFTVVFSAMFGL-MRPLKALTSVTSEFQRGMAACQTLFGLMDLETER 328 (582)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHH--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcC
Confidence 3444556778899999999999999 999999988888 8887776655555444332222222211110000
Q ss_pred ceEEEecCCCceeecCCCCCCCCCCccccChhHH-HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHH
Q psy1371 96 KTVMYTALGSEWRPFGHPKRRRPLNSVVLDSGVA-DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITAL 174 (244)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~l 174 (244)
. .... +.......+++++|.+.|+.. +.+++++ ++.+++|+.++|+||||||||||+++|
T Consensus 329 ~-----~~~~---~~~~~~~~i~~~~v~~~y~~~~~~~l~~i-----------~l~i~~G~~~~ivG~sGsGKSTll~~l 389 (582)
T 3b5x_A 329 D-----NGKY---EAERVNGEVDVKDVTFTYQGKEKPALSHV-----------SFSIPQGKTVALVGRSGSGKSTIANLF 389 (582)
T ss_pred C-----CCCC---CCCCCCCeEEEEEEEEEcCCCCccccccc-----------eEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 0 0000 001113357899999998642 4588999 889999999999999999999999999
Q ss_pred hcccCCCeEEEEeCCCCC---CHHHHHHHhhhcCCCCceehhhH-hhhhccc
Q psy1371 175 AGELEFGICVLNLSERGL---TDDRLNHLLSVAPQNSIILLEDI-DAAFVTR 222 (244)
Q Consensus 175 a~~~~~~~g~i~~~~~~~---~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r 222 (244)
+|+++|+.|.+.++|.+. +...+|+.+++++|++.+|-+++ |++...+
T Consensus 390 ~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~ 441 (582)
T 3b5x_A 390 TRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAA 441 (582)
T ss_pred hcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccC
Confidence 999999999999998544 34567888999999999987777 7776543
No 9
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.75 E-value=1.5e-19 Score=169.07 Aligned_cols=181 Identities=18% Similarity=0.232 Sum_probs=129.6
Q ss_pred cchhHHHhhhhHHHHhhhcccccCeeecCCCCCcchhhHhhhhcCCCCccchhhhhhhHHHHHHHHHHHHHHHHHhhcCc
Q psy1371 17 GAGFGLFGLGAGAAILRKGKFRPGRESLPPPNVSMPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKARTLALKQYEGK 96 (244)
Q Consensus 17 ~~~~~~~~~~~g~~~v~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 96 (244)
..+..++++++|++++..|.+|+| .+++++.+...+ ..|+..+...+..+.+...-+++..+......+..
T Consensus 255 ~~~~~~~v~~~g~~~v~~g~lt~g--------~l~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 325 (578)
T 4a82_A 255 TDIGPIIVIGVGAYLAISGSITVG--------TLAAFVGYLELL-FGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIK 325 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCHH--------HHHHHHHTHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSC
T ss_pred HHHHHHHHHHHHHHHHHcCCcCHH--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 344556788899999999999999 999999998888 88977766554444442222222222111100000
Q ss_pred eEEEecCCCceeecCCCCCCCCCCccccChhH-HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHh
Q psy1371 97 TVMYTALGSEWRPFGHPKRRRPLNSVVLDSGV-ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALA 175 (244)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la 175 (244)
............+.+++++|++.|+. ...+++++ ++.+++|+.++++||||||||||+++|+
T Consensus 326 ------~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i-----------sl~i~~G~~~~ivG~sGsGKSTll~~l~ 388 (578)
T 4a82_A 326 ------NGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDI-----------NLSIEKGETVAFVGMSGGGKSTLINLIP 388 (578)
T ss_dssp ------CCTTCCCCCCCSCCEEEEEEEECSCSSSCCSEEEE-----------EEEECTTCEEEEECSTTSSHHHHHTTTT
T ss_pred ------CCCCccccCCCCCeEEEEEEEEEcCCCCCcceeee-----------EEEECCCCEEEEECCCCChHHHHHHHHh
Confidence 00000011122345789999999864 23467777 8888999999999999999999999999
Q ss_pred cccCCCeEEEEeCCCC---CCHHHHHHHhhhcCCCCceehhhH-hhhhcccC
Q psy1371 176 GELEFGICVLNLSERG---LTDDRLNHLLSVAPQNSIILLEDI-DAAFVTRE 223 (244)
Q Consensus 176 ~~~~~~~g~i~~~~~~---~~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r~ 223 (244)
|+++|+.|.+.++|.+ .+...+|+.+++++|++.+|-+++ |++...+.
T Consensus 389 g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~ 440 (578)
T 4a82_A 389 RFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP 440 (578)
T ss_dssp TSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCS
T ss_pred cCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCC
Confidence 9999999999999954 355678899999999999998888 88876543
No 10
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.73 E-value=3.1e-19 Score=180.29 Aligned_cols=183 Identities=15% Similarity=0.087 Sum_probs=131.6
Q ss_pred cchhHHHhhhhHHHHhhhcccccCeeecCCCCCcchhhHhhhhcCCCCccchhhhhhhHHHHHHHHHHHHHHHHHhhcCc
Q psy1371 17 GAGFGLFGLGAGAAILRKGKFRPGRESLPPPNVSMPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKARTLALKQYEGK 96 (244)
Q Consensus 17 ~~~~~~~~~~~g~~~v~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 96 (244)
..+..++++++|++++..|.+|+| .+++++.++..+ ..|+..++..+..+.....-+++..+..+......
T Consensus 330 ~~~~~~~~~~~g~~~v~~g~lt~g--------~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 400 (1321)
T 4f4c_A 330 NFISFALAFYIGVGWVHDGSLNFG--------DMLTTFSSVMMG-SMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVID 400 (1321)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCHH--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcHH--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 345666788899999999999999 988888888887 77865555444333332222221111111100000
Q ss_pred eEEEecCCCceeecCCCCCCCCCCccccChhHH--HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHH
Q psy1371 97 TVMYTALGSEWRPFGHPKRRRPLNSVVLDSGVA--DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITAL 174 (244)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~l 174 (244)
.....-.......+.+.|+||+|.|+.. ..+++++ ++.+++|+.++|+||+|||||||+++|
T Consensus 401 -----~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~i-----------sl~i~~G~~vaivG~sGsGKSTll~ll 464 (1321)
T 4f4c_A 401 -----SSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGM-----------NLRVNAGQTVALVGSSGCGKSTIISLL 464 (1321)
T ss_dssp -----CSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEE-----------EEEECTTCEEEEEECSSSCHHHHHHHH
T ss_pred -----ccccccccCCCCCCcEEEEEeeeeCCCCCCCceeece-----------EEeecCCcEEEEEecCCCcHHHHHHHh
Confidence 0000000011224468899999998642 3577888 899999999999999999999999999
Q ss_pred hcccCCCeEEEEeCC---CCCCHHHHHHHhhhcCCCCceehhhH-hhhhcccCc
Q psy1371 175 AGELEFGICVLNLSE---RGLTDDRLNHLLSVAPQNSIILLEDI-DAAFVTREE 224 (244)
Q Consensus 175 a~~~~~~~g~i~~~~---~~~~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r~~ 224 (244)
.|+++|..|.+.++| .+.+.+.+|+.+++|+|++.+|-++| ||+...++.
T Consensus 465 ~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~ 518 (1321)
T 4f4c_A 465 LRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEG 518 (1321)
T ss_dssp TTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTT
T ss_pred ccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhccc
Confidence 999999999999999 45567889999999999999999999 999877643
No 11
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.73 E-value=4e-19 Score=166.71 Aligned_cols=179 Identities=15% Similarity=0.077 Sum_probs=124.1
Q ss_pred chhHHHhhhhHHHHhhhcccccCeeecCCCCCcchhhHhhhhcCCCCccchhhhhhhHHHHHHHHHHHHHHHHHhhcCce
Q psy1371 18 AGFGLFGLGAGAAILRKGKFRPGRESLPPPNVSMPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKARTLALKQYEGKT 97 (244)
Q Consensus 18 ~~~~~~~~~~g~~~v~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 97 (244)
.+..++++++|++++..|.+|+| .+++++.+...+ ..|+..+...+..+.+...-+++..+......+..
T Consensus 257 ~~~~~~~~~~g~~~v~~g~lt~g--------~l~~~~~~~~~~-~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~- 326 (595)
T 2yl4_A 257 NLIVLSVLYKGGLLMGSAHMTVG--------ELSSFLMYAFWV-GISIGGLSSFYSELMKGLGAGGRLWELLEREPKLP- 326 (595)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCHH--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSC-
T ss_pred HHHHHHHHHHHHHHHHcCCCCHH--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccC-
Confidence 34556678899999999999999 999898888887 78866666444444332222222222111100000
Q ss_pred EEEecCCCceeecCCCCCC-CCCCccccChhHH--HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHH
Q psy1371 98 VMYTALGSEWRPFGHPKRR-RPLNSVVLDSGVA--DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITAL 174 (244)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~--~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~l 174 (244)
....-.......+. +++++|++.|+.. ..+++++ ++.+++|+.++|+||||||||||+++|
T Consensus 327 -----~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~i-----------sl~i~~G~~~~ivG~sGsGKSTLl~~l 390 (595)
T 2yl4_A 327 -----FNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDF-----------SLSIPSGSVTALVGPSGSGKSTVLSLL 390 (595)
T ss_dssp -----SSCSBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEE-----------EEEECTTCEEEEECCTTSSSTHHHHHH
T ss_pred -----CCCCCCCCcCCCCCeEEEEEEEEEeCCCCCCccccce-----------EEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 00000000112334 7889999988532 2366777 888899999999999999999999999
Q ss_pred hcccCCCeEEEEeCCCCC---CHHHHHHHhhhcCCCCceehhhH-hhhhccc
Q psy1371 175 AGELEFGICVLNLSERGL---TDDRLNHLLSVAPQNSIILLEDI-DAAFVTR 222 (244)
Q Consensus 175 a~~~~~~~g~i~~~~~~~---~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r 222 (244)
+|+++|+.|.+.++|.+. +...+|+.+++++|++.+|-+++ |++...+
T Consensus 391 ~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~ 442 (595)
T 2yl4_A 391 LRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGA 442 (595)
T ss_dssp TTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTS
T ss_pred hcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcC
Confidence 999999999999999543 45678888999999998887777 7776543
No 12
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.72 E-value=3.9e-19 Score=166.34 Aligned_cols=179 Identities=15% Similarity=0.111 Sum_probs=128.1
Q ss_pred ccchhHHHhhhhHHHHhhhcccccCeeecCCCCCcchhhHhhhhcCCCCccchhhhhhhHHHHHHHHHHHHHHHHHhhcC
Q psy1371 16 FGAGFGLFGLGAGAAILRKGKFRPGRESLPPPNVSMPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKARTLALKQYEG 95 (244)
Q Consensus 16 ~~~~~~~~~~~~g~~~v~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 95 (244)
+..+..++++++|++++..|.+|+| .+++++.+...+ ..|+..+...+..+.+....+++..+......+.
T Consensus 258 ~~~~~~~~~~~~g~~~v~~g~lt~g--------~l~~~~~~~~~~-~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~ 328 (582)
T 3b60_A 258 IASLALAFVLYAASFPSVMDSLTAG--------TITVVFSSMIAL-MRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEK 328 (582)
T ss_dssp HHHHHHHHHHHHHHSSSTTSSSHHH--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHH--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 3344556778899999999999999 999999988888 8887776655555444333333322222111110
Q ss_pred ceEEEecCCCceeecCCCCCCCCCCccccChhHH-HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHH
Q psy1371 96 KTVMYTALGSEWRPFGHPKRRRPLNSVVLDSGVA-DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITAL 174 (244)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~l 174 (244)
. +.. .........+++++|++.|+.. +.+++++ ++.+++|+.++|+||||||||||+++|
T Consensus 329 ~-------~~~-~~~~~~~~~i~~~~v~~~y~~~~~~~l~~v-----------~~~i~~G~~~~ivG~sGsGKSTLl~~l 389 (582)
T 3b60_A 329 D-------EGK-RVIDRATGDLEFRNVTFTYPGREVPALRNI-----------NLKIPAGKTVALVGRSGSGKSTIASLI 389 (582)
T ss_dssp C-------CCC-BCCSCCCCCEEEEEEEECSSSSSCCSEEEE-----------EEEECTTCEEEEEECTTSSHHHHHHHH
T ss_pred c-------CCC-CCCCCCCCcEEEEEEEEEcCCCCCccccce-----------eEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 0 000 0011123457899999998632 3467777 888899999999999999999999999
Q ss_pred hcccCCCeEEEEeCCCCC---CHHHHHHHhhhcCCCCceehhhH-hhhhccc
Q psy1371 175 AGELEFGICVLNLSERGL---TDDRLNHLLSVAPQNSIILLEDI-DAAFVTR 222 (244)
Q Consensus 175 a~~~~~~~g~i~~~~~~~---~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r 222 (244)
+|+++|+.|.+.++|.+. +...+|+.+++++|++.+|-+++ |++...+
T Consensus 390 ~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~ 441 (582)
T 3b60_A 390 TRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYAR 441 (582)
T ss_dssp TTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTT
T ss_pred hhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccC
Confidence 999999999999998543 45678889999999998887777 7776543
No 13
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.72 E-value=3.8e-19 Score=166.59 Aligned_cols=182 Identities=13% Similarity=0.110 Sum_probs=127.9
Q ss_pred ccchhHHHhhhhHHHHhhhcccccCeeecCCCCCcchhhHhhhhcCCCCccchhhhhhhHHHHHHHHHHHHHHHHHhhcC
Q psy1371 16 FGAGFGLFGLGAGAAILRKGKFRPGRESLPPPNVSMPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKARTLALKQYEG 95 (244)
Q Consensus 16 ~~~~~~~~~~~~g~~~v~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 95 (244)
+..+..++++++|++++..|.+++| .+++++.+...+ ..|+..+...+..+.+...-.++..+........
T Consensus 256 ~~~~~~~~vl~~g~~~v~~g~lt~g--------~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~ 326 (587)
T 3qf4_A 256 IVNMGMIAVLWFGGVLVRNNQMEIG--------SIMAYTNYLMQI-MFSLMMIGNILNFIVRASASAKRVLEVLNEKPAI 326 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSCHH--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSC
T ss_pred HHHHHHHHHHHHHHHHHHcCCcCHH--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 3344556778899999999999999 999998888887 7786665544444433222222222211111000
Q ss_pred ceEEEecCCCceeecCCCCCCCCCCccccChhH-HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHH
Q psy1371 96 KTVMYTALGSEWRPFGHPKRRRPLNSVVLDSGV-ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITAL 174 (244)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~l 174 (244)
. ....-.........+++++|++.|+. .+.+++++ ++.+++++.++++||||||||||+++|
T Consensus 327 ~------~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i-----------sl~i~~Ge~~~ivG~sGsGKSTll~~l 389 (587)
T 3qf4_A 327 E------EADNALALPNVEGSVSFENVEFRYFENTDPVLSGV-----------NFSVKPGSLVAVLGETGSGKSTLMNLI 389 (587)
T ss_dssp C------CCTTCBCCSCCCCCEEEEEEEECSSSSSCCSEEEE-----------EEEECTTCEEEEECSSSSSHHHHHHTT
T ss_pred C------CCCCccccCCCCCcEEEEEEEEEcCCCCCcceece-----------EEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 0 00000001122346889999999853 23467777 888999999999999999999999999
Q ss_pred hcccCCCeEEEEeCCCCC---CHHHHHHHhhhcCCCCceehhhH-hhhhcccC
Q psy1371 175 AGELEFGICVLNLSERGL---TDDRLNHLLSVAPQNSIILLEDI-DAAFVTRE 223 (244)
Q Consensus 175 a~~~~~~~g~i~~~~~~~---~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r~ 223 (244)
+|+++|+.|.+.++|.+. +...+|+.+++++|++.+|-+++ |++...+.
T Consensus 390 ~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~ 442 (587)
T 3qf4_A 390 PRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRE 442 (587)
T ss_dssp TTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCS
T ss_pred hCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCC
Confidence 999999999999999654 45678999999999999998788 77765543
No 14
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.71 E-value=1.5e-17 Score=159.60 Aligned_cols=129 Identities=24% Similarity=0.324 Sum_probs=108.9
Q ss_pred CCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC----
Q psy1371 114 KRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE---- 189 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~---- 189 (244)
.+.+.|+||..-...++.+.+.+...+.++++|..+++.+++|++|+||||||||+++|++|+.++.+...++..+
T Consensus 198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk 277 (806)
T 3cf2_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS
T ss_pred CCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcc
Confidence 3457788888777788888888888999999999999999999999999999999999999999998888777533
Q ss_pred -CCCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCcCccc-HHHHHHHHHHhhhc
Q psy1371 190 -RGLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREESSQG-LEDIDAAFVTREES 242 (244)
Q Consensus 190 -~~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~~~~~-~~~~~~~~l~~~~~ 242 (244)
.+.+++.+++.|..+. +++++|+||+|.++..|+..... .+++.++|+..+|.
T Consensus 278 ~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg 334 (806)
T 3cf2_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDG 334 (806)
T ss_dssp CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhc
Confidence 4456678999998876 68999999999999988655443 46888889888764
No 15
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.69 E-value=5.4e-18 Score=171.25 Aligned_cols=192 Identities=13% Similarity=0.049 Sum_probs=127.1
Q ss_pred ccchhHHHhhhhHHHHhhhcccccCeeecCCCCCcchh--hHhhhhcCCCCccchhhhhhhHHHHHHHHHHHHHHHHHhh
Q psy1371 16 FGAGFGLFGLGAGAAILRKGKFRPGRESLPPPNVSMPF--MELIDSLSTNPYFGAGFGLFGLGAGAAILRKARTLALKQY 93 (244)
Q Consensus 16 ~~~~~~~~~~~~g~~~v~~g~~~~G~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 93 (244)
+..+...+++++|++++..|..++| ....+ +.++... ..|+..+......+.....-.++..+..+...
T Consensus 989 ~~~~~~~~~~~~g~~lv~~~~~~~~--------~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~ 1059 (1321)
T 4f4c_A 989 VLYLLNTCAYRMGLALIITDPPTMQ--------PMRVLRVMYAITIS-TSTLGFATSYFPEYAKATFAGGIIFGMLRKIS 1059 (1321)
T ss_dssp HHHHHHHHHHHHHHHTTSSSSCSSC--------HHHHHHHHHHHHTT-TSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhHHHHhcCccccc--------hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcc
Confidence 3445566778899999999998888 43322 3333333 55655555433333332222222212111111
Q ss_pred cCceEEEecCCCceeecCCCCCCCCCCccccChhHH--HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHH
Q psy1371 94 EGKTVMYTALGSEWRPFGHPKRRRPLNSVVLDSGVA--DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFI 171 (244)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~ 171 (244)
+... ....... ....+.+.|+||+|.|+.. .++++++ ++.+++|+.++|+||+|||||||+
T Consensus 1060 ~~~~--~~~~~~~----~~~~g~I~f~nVsf~Y~~~~~~~VL~~i-----------sl~I~~Ge~vaIVG~SGsGKSTL~ 1122 (1321)
T 4f4c_A 1060 KIDS--LSLAGEK----KKLYGKVIFKNVRFAYPERPEIEILKGL-----------SFSVEPGQTLALVGPSGCGKSTVV 1122 (1321)
T ss_dssp SSCT--TCCCSBC----CCCCCCEEEEEEEECCTTSCSSCSEEEE-----------EEEECTTCEEEEECSTTSSTTSHH
T ss_pred cCCC--ccCCCCC----CCCCCeEEEEEEEEeCCCCCCCccccce-----------eEEECCCCEEEEECCCCChHHHHH
Confidence 1000 0000111 1234568899999999643 2477888 899999999999999999999999
Q ss_pred HHHhcccCCCeEEEEeCCC---CCCHHHHHHHhhhcCCCCceehhhH-hhhhcccCcCcccHHHHH
Q psy1371 172 TALAGELEFGICVLNLSER---GLTDDRLNHLLSVAPQNSIILLEDI-DAAFVTREESSQGLEDID 233 (244)
Q Consensus 172 ~~la~~~~~~~g~i~~~~~---~~~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r~~~~~~~~~~~ 233 (244)
++|.|+++|+.|.|.++|. .++.+.+|+.++++||++.+|-++| ||+....+......+++.
T Consensus 1123 ~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~ 1188 (1321)
T 4f4c_A 1123 ALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVE 1188 (1321)
T ss_dssp HHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHH
T ss_pred HHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHH
Confidence 9999999999999999994 4566889999999999999999999 898766543333333433
No 16
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.67 E-value=1.8e-17 Score=158.95 Aligned_cols=129 Identities=19% Similarity=0.350 Sum_probs=104.9
Q ss_pred CCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC----
Q psy1371 114 KRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE---- 189 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~---- 189 (244)
.+.+.|+++..-.+.++.+.+.+...+.+++.|.++++.+++|++|+||||||||++++++|++++.+...+...+
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~ 550 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTT
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcc
Confidence 4567899998888888888888888899999999999999999999999999999999999999998877766433
Q ss_pred -CCCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCcC----cccHHHHHHHHHHhhhc
Q psy1371 190 -RGLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREES----SQGLEDIDAAFVTREES 242 (244)
Q Consensus 190 -~~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~~----~~~~~~~~~~~l~~~~~ 242 (244)
.+.+++.+|+.|..+. ++|++|+||+|+++..|+.. ....+++.++||..+|.
T Consensus 551 ~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg 610 (806)
T 3cf2_A 551 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG 610 (806)
T ss_dssp TCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHS
T ss_pred ccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhC
Confidence 6778999999999886 58999999999999988532 22356899999999874
No 17
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.64 E-value=4.7e-17 Score=164.07 Aligned_cols=180 Identities=12% Similarity=0.146 Sum_probs=122.2
Q ss_pred ccchhHHHhhhhHHHHhhhcccccCeeecCCCCCcchhhHhhhhcCCCCccchhhhhhhHHHHHHHHHHHHHHHHHhh--
Q psy1371 16 FGAGFGLFGLGAGAAILRKGKFRPGRESLPPPNVSMPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKARTLALKQY-- 93 (244)
Q Consensus 16 ~~~~~~~~~~~~g~~~v~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~l~~~~~~~~~~~-- 93 (244)
+..+..++++++|++++..|.+++| .+++++.++... ..|+..+. .....++.+.....+..
T Consensus 301 ~~~~~~~~~~~~g~~lv~~g~~~~g--------~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~a~~ri~~~ 364 (1284)
T 3g5u_A 301 LIYASYALAFWYGTSLVISKEYSIG--------QVLTVFFSVLIG-AFSVGQAS-------PNIEAFANARGAAYEVFKI 364 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCSS--------CHHHHHHHHHHH-HHHHHHHH-------HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHH--------HHHHHHHHHHHH-HHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 3445666788999999999999999 877766655444 44533332 22222222222222211
Q ss_pred -cCceEEEecCCCceeecCCCCCCCCCCccccChhHH--HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHH
Q psy1371 94 -EGKTVMYTALGSEWRPFGHPKRRRPLNSVVLDSGVA--DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSF 170 (244)
Q Consensus 94 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl 170 (244)
+..... ......-.......+.+++++|+|.|+.. ..+++++ ++.+++|+.++|+||||||||||
T Consensus 365 l~~~~~~-~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~i-----------sl~i~~G~~~~ivG~sGsGKSTl 432 (1284)
T 3g5u_A 365 IDNKPSI-DSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGL-----------NLKVKSGQTVALVGNSGCGKSTT 432 (1284)
T ss_dssp TSCCCCC-SSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEE-----------EEEECTTCEEEEECCSSSSHHHH
T ss_pred HcCCCcC-CcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecc-----------eEEEcCCCEEEEECCCCCCHHHH
Confidence 110000 00000000011223468899999998643 2467887 88999999999999999999999
Q ss_pred HHHHhcccCCCeEEEEeCCC---CCCHHHHHHHhhhcCCCCceehhhH-hhhhcccC
Q psy1371 171 ITALAGELEFGICVLNLSER---GLTDDRLNHLLSVAPQNSIILLEDI-DAAFVTRE 223 (244)
Q Consensus 171 ~~~la~~~~~~~g~i~~~~~---~~~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r~ 223 (244)
+++|+|+++|+.|.|.++|. ..+...+|+.+++++|++.+|-+++ |++...+.
T Consensus 433 ~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~ 489 (1284)
T 3g5u_A 433 VQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRE 489 (1284)
T ss_dssp HHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCS
T ss_pred HHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCC
Confidence 99999999999999999994 3456788999999999999998888 88876554
No 18
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.59 E-value=8.9e-16 Score=130.78 Aligned_cols=127 Identities=19% Similarity=0.347 Sum_probs=86.0
Q ss_pred CCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC--
Q psy1371 115 RRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL-- 192 (244)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~-- 192 (244)
+.++|+||....+.++.+.+.+...+.+++.++++++..++|++|+||||||||||+++|++.++++ .+.+++...
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~--~i~i~g~~l~~ 82 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLN--FISVKGPELLN 82 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCE--EEEEETTTTCS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCC--EEEEEcHHHHh
Confidence 4567999987777777777778889999999999999999999999999999999999999999874 555555322
Q ss_pred -----CHHHHHHHhhhc--CCCCceehhhHhhhhcccCcCcc-cHHHHHHHHHHhhhcC
Q psy1371 193 -----TDDRLNHLLSVA--PQNSIILLEDIDAAFVTREESSQ-GLEDIDAAFVTREESS 243 (244)
Q Consensus 193 -----~~~~~~~~~~~~--~q~~~lf~deid~~~~~r~~~~~-~~~~~~~~~l~~~~~~ 243 (244)
..+.++..|..+ ..++++|+||+|.++..|..... ...++.+.++..++..
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg 141 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGL 141 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTC
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcc
Confidence 123455556554 35689999999998766532211 1234556677666643
No 19
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.59 E-value=7.1e-15 Score=127.90 Aligned_cols=126 Identities=24% Similarity=0.374 Sum_probs=100.2
Q ss_pred CCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhccc-CCCeEEEEeCC----
Q psy1371 115 RRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGEL-EFGICVLNLSE---- 189 (244)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~-~~~~g~i~~~~---- 189 (244)
++..|+++......++.+.+.+...+.+++++.. +..++++++|+||||||||++++++++.+ ..+...+...+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~ 85 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 85 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCS
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhh
Confidence 4678999999888888888889899999999853 46677999999999999999999999988 55555666543
Q ss_pred -CCCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCcCc-ccHHHHHHHHHHhhh
Q psy1371 190 -RGLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREESS-QGLEDIDAAFVTREE 241 (244)
Q Consensus 190 -~~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~~~-~~~~~~~~~~l~~~~ 241 (244)
.+.+++.++..|..+. +++++|+||+|.++..|.... ...+++.+.++..++
T Consensus 86 ~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld 141 (322)
T 1xwi_A 86 WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQ 141 (322)
T ss_dssp SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHh
Confidence 3456777888887664 578999999999988775443 335677888888776
No 20
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.56 E-value=1.4e-16 Score=137.62 Aligned_cols=98 Identities=21% Similarity=0.335 Sum_probs=83.0
Q ss_pred CCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCC--
Q psy1371 114 KRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERG-- 191 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~-- 191 (244)
...+.+++|+|.|+....+++++ ++.+++++.++|+||||||||||+++|+|++.|+.|.|.+++.+
T Consensus 51 ~~~i~~~~vs~~y~~~~~vL~~i-----------sl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~ 119 (306)
T 3nh6_A 51 KGRIEFENVHFSYADGRETLQDV-----------SFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDIS 119 (306)
T ss_dssp SCCEEEEEEEEESSTTCEEEEEE-----------EEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETT
T ss_pred CCeEEEEEEEEEcCCCCceeeee-----------eEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcc
Confidence 34578999999985434567777 88889999999999999999999999999999999999999943
Q ss_pred -CCHHHHHHHhhhcCCCCceehhhH-hhhhccc
Q psy1371 192 -LTDDRLNHLLSVAPQNSIILLEDI-DAAFVTR 222 (244)
Q Consensus 192 -~~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r 222 (244)
.+...+|+.+++++|++.+|-+++ |++...+
T Consensus 120 ~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~ 152 (306)
T 3nh6_A 120 QVTQASLRSHIGVVPQDTVLFNDTIADNIRYGR 152 (306)
T ss_dssp SBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTS
T ss_pred cCCHHHHhcceEEEecCCccCcccHHHHHHhhc
Confidence 455678899999999999997777 7777654
No 21
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.56 E-value=2.3e-15 Score=129.73 Aligned_cols=128 Identities=19% Similarity=0.351 Sum_probs=97.3
Q ss_pred CCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC----
Q psy1371 114 KRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE---- 189 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~---- 189 (244)
.++..|+++......++.+.+.+...+.+++.+.+++++++++++|+||||||||++++++++.++.+...+...+
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 88 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence 4567899999888888888888888899999999999999999999999999999999999999876554443221
Q ss_pred -CCCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCcC----cccHHHHHHHHHHhhh
Q psy1371 190 -RGLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREES----SQGLEDIDAAFVTREE 241 (244)
Q Consensus 190 -~~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~~----~~~~~~~~~~~l~~~~ 241 (244)
.+.+.+.++..|..+. +++++|+||+|.+...++.. ....+++...+++.++
T Consensus 89 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~ 147 (301)
T 3cf0_A 89 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMD 147 (301)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHH
T ss_pred hcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhh
Confidence 1233445666666653 56899999999998765422 1223456667777665
No 22
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.56 E-value=3.3e-16 Score=157.89 Aligned_cols=174 Identities=13% Similarity=0.036 Sum_probs=117.8
Q ss_pred cchhHHHhhhhHHHHhhhcccccCeeecCCCCCcchhhHhhhhcCCCCccc-------hhhhhhhHHHHHHHHHHHHHHH
Q psy1371 17 GAGFGLFGLGAGAAILRKGKFRPGRESLPPPNVSMPFMELIDSLSTNPYFG-------AGFGLFGLGAGAAILRKARTLA 89 (244)
Q Consensus 17 ~~~~~~~~~~~g~~~v~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~-------~~~~~~~~~~i~~~l~~~~~~~ 89 (244)
..+...+++++|++++..|.+++| .++.++.++... ..|+.. +.....+..++.++++...+
T Consensus 945 ~~~~~~~~~~~g~~lv~~~~~~~~--------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~-- 1013 (1284)
T 3g5u_A 945 MYFSYAAAFRFGAYLVTQQLMTFE--------NVLLVFSAIVFG-AMAVGQVSSFAPDYAKATVSASHIIRIIEKTPE-- 1013 (1284)
T ss_dssp HHHHHHHHHHHHHCCCSSSCSCST--------THHHHHHHHHHH-HHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCS--
T ss_pred HHHHHHHHHHHHHHHHHhCCccHH--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc--
Confidence 334566788899999999999999 666554443332 222222 22223334444444432110
Q ss_pred HHhhcCceEEEecCCCceeecCCCCCCCCCCccccChhHH--HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCCh
Q psy1371 90 LKQYEGKTVMYTALGSEWRPFGHPKRRRPLNSVVLDSGVA--DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGK 167 (244)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGK 167 (244)
... ....-.......+.+.+++|.+.|+.. ..+++++ ++.+++|+.++|+|||||||
T Consensus 1014 -----~~~-----~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~v-----------sl~i~~Ge~v~ivG~sGsGK 1072 (1284)
T 3g5u_A 1014 -----IDS-----YSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGL-----------SLEVKKGQTLALVGSSGCGK 1072 (1284)
T ss_dssp -----SSS-----CCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSC-----------CEEECSSSEEEEECSSSTTH
T ss_pred -----ccc-----cccccccccCCCCcEEEEEEEEECCCCCCCeeecce-----------eEEEcCCCEEEEECCCCCCH
Confidence 000 000000001123457899999998643 2467777 88889999999999999999
Q ss_pred hHHHHHHhcccCCCeEEEEeCCCCC---CHHHHHHHhhhcCCCCceehhhH-hhhhccc
Q psy1371 168 SSFITALAGELEFGICVLNLSERGL---TDDRLNHLLSVAPQNSIILLEDI-DAAFVTR 222 (244)
Q Consensus 168 Ttl~~~la~~~~~~~g~i~~~~~~~---~~~~~~~~~~~~~q~~~lf~dei-d~~~~~r 222 (244)
|||+++|+|+++|+.|.|.++|.+. +...+|+.+++++|++.+|-+++ |++...+
T Consensus 1073 STl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~ 1131 (1284)
T 3g5u_A 1073 STVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGD 1131 (1284)
T ss_dssp HHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCC
T ss_pred HHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccC
Confidence 9999999999999999999999654 45678888999999999998888 7876554
No 23
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.53 E-value=2.4e-14 Score=130.46 Aligned_cols=127 Identities=24% Similarity=0.401 Sum_probs=96.3
Q ss_pred CCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCC---
Q psy1371 114 KRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSER--- 190 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~--- 190 (244)
....+|++|......++.+ +++...+..++.+.+++...+++++|+||||||||++++++++..+.+...++..+.
T Consensus 10 ~~~~~f~di~G~~~~~~~l-~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEEL-KEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHH-HHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHH-HHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 3457899998888777665 555566888999999999999999999999999999999999999888877775541
Q ss_pred --CCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCcC----cccHHHHHHHHHHhhh
Q psy1371 191 --GLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREES----SQGLEDIDAAFVTREE 241 (244)
Q Consensus 191 --~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~~----~~~~~~~~~~~l~~~~ 241 (244)
+.....++..|..+. +++++|+||+|.+...|+.. ....++..+.++..++
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld 147 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMD 147 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHh
Confidence 223456777777664 67999999999998876532 2334567777877665
No 24
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.53 E-value=3.5e-14 Score=119.12 Aligned_cols=127 Identities=20% Similarity=0.376 Sum_probs=89.8
Q ss_pred CCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC----
Q psy1371 114 KRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE---- 189 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~---- 189 (244)
.++..|+++......++.+.+ +...+.+++.+..++.+.+++++|+|||||||||+++++++.++.+...++...
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~ 84 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAE-LVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 84 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHH-HHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS
T ss_pred CCCCCHHHhcCcHHHHHHHHH-HHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH
Confidence 456789999988877776644 445577888888889999999999999999999999999999987765554333
Q ss_pred -CCCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCcC----cccHHHHHHHHHHhhh
Q psy1371 190 -RGLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREES----SQGLEDIDAAFVTREE 241 (244)
Q Consensus 190 -~~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~~----~~~~~~~~~~~l~~~~ 241 (244)
.+.....++..+..+. .++++|+||+|.+...+... .....+..+.++..++
T Consensus 85 ~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~ 143 (257)
T 1lv7_A 85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMD 143 (257)
T ss_dssp CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhh
Confidence 2334566777776654 35799999999998766432 2233466777777765
No 25
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.51 E-value=1.5e-14 Score=125.71 Aligned_cols=128 Identities=26% Similarity=0.354 Sum_probs=97.4
Q ss_pred CCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC---
Q psy1371 113 PKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE--- 189 (244)
Q Consensus 113 ~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~--- 189 (244)
..++..|+++......++.+.+.+...+..++.+.. +..++++++|+||||||||+++++++..++.+...+....
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 89 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 89 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHT
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhh
Confidence 345678999999988888888888888899988855 5667789999999999999999999999988777776533
Q ss_pred --CCCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCcC-cccHHHHHHHHHHhhh
Q psy1371 190 --RGLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREES-SQGLEDIDAAFVTREE 241 (244)
Q Consensus 190 --~~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~~-~~~~~~~~~~~l~~~~ 241 (244)
.+..+..++..|..+. +++++|+||+|.+...+... ....+++.+.++..++
T Consensus 90 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~ 146 (322)
T 3eie_A 90 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMN 146 (322)
T ss_dssp TTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHG
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhc
Confidence 2334556777777664 56899999999998876432 2344577777777765
No 26
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.51 E-value=3e-14 Score=125.60 Aligned_cols=128 Identities=25% Similarity=0.349 Sum_probs=95.0
Q ss_pred CCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC---
Q psy1371 113 PKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE--- 189 (244)
Q Consensus 113 ~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~--- 189 (244)
..++..|+++......++.+.+.+...+..++.+.. +..++++++|+||||||||+++++++..++.+...+....
T Consensus 44 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~ 122 (355)
T 2qp9_X 44 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 122 (355)
T ss_dssp ---CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHS
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhh
Confidence 345678999988888888888888888899998855 6677889999999999999999999999988777776433
Q ss_pred --CCCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCcCc-ccHHHHHHHHHHhhh
Q psy1371 190 --RGLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREESS-QGLEDIDAAFVTREE 241 (244)
Q Consensus 190 --~~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~~~-~~~~~~~~~~l~~~~ 241 (244)
.+..+..++..|..+. +++++|+||+|.+...|.... ....++.++++..++
T Consensus 123 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~ 179 (355)
T 2qp9_X 123 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMN 179 (355)
T ss_dssp CC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhh
Confidence 3445667777777664 678999999999987765433 234577788887775
No 27
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.50 E-value=4.9e-14 Score=119.77 Aligned_cols=111 Identities=25% Similarity=0.347 Sum_probs=90.0
Q ss_pred CCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC----
Q psy1371 114 KRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE---- 189 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~---- 189 (244)
.++..|+++......++.+.+.+...+..++.++.+++..+++++|+||||||||++++++++.++.+...+....
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 90 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKK 90 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHh
Confidence 4467899999888888888888888899999999999999999999999999999999999999988777776544
Q ss_pred -CCCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCc
Q psy1371 190 -RGLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREE 224 (244)
Q Consensus 190 -~~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~ 224 (244)
.+.....++..+..+. +++++|+||+|.+...+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~ 128 (285)
T 3h4m_A 91 FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTD 128 (285)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSS
T ss_pred ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCcc
Confidence 1222345666666554 4589999999999877654
No 28
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.50 E-value=8.9e-14 Score=116.48 Aligned_cols=127 Identities=24% Similarity=0.424 Sum_probs=89.2
Q ss_pred CCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC---
Q psy1371 113 PKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE--- 189 (244)
Q Consensus 113 ~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~--- 189 (244)
..++.+|+++......+.. ++++...+..+..+.++++..++|++|+||||||||||++++++..... .+.+++
T Consensus 9 ~~~~~~~~~i~g~~~~~~~-l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~--~i~~~~~~~ 85 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEE-LKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP--FITASGSDF 85 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHH-HHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEHHHH
T ss_pred CCCCCCHHHhCCcHHHHHH-HHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--EEEeeHHHH
Confidence 3456789999887766554 4677777888888989999999999999999999999999999998744 444433
Q ss_pred ----CCCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCc----CcccHHHHHHHHHHhhhc
Q psy1371 190 ----RGLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREE----SSQGLEDIDAAFVTREES 242 (244)
Q Consensus 190 ----~~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~----~~~~~~~~~~~~l~~~~~ 242 (244)
.+.....++..+..+. .++++++||+|.+...+.. ......+..+.++..++.
T Consensus 86 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g 148 (254)
T 1ixz_A 86 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 148 (254)
T ss_dssp HHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhC
Confidence 1112234555666554 3578999999998866542 123345666777777664
No 29
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.50 E-value=1.4e-13 Score=126.18 Aligned_cols=128 Identities=23% Similarity=0.401 Sum_probs=96.4
Q ss_pred CCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCC----
Q psy1371 115 RRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSER---- 190 (244)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~---- 190 (244)
++.+|++|......+..+ +++...+..++.+.++++..++|++|+||||||||||+++|++....+...++..+.
T Consensus 26 ~~~~f~dv~G~~~~k~~l-~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEEL-KEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHH-HHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHH-HHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 567899998887776654 667777888899999999999999999999999999999999998766555554331
Q ss_pred -CCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCc----CcccHHHHHHHHHHhhhcC
Q psy1371 191 -GLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREE----SSQGLEDIDAAFVTREESS 243 (244)
Q Consensus 191 -~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~----~~~~~~~~~~~~l~~~~~~ 243 (244)
+.....++..|..+. .++++|+||+|.+...+.. ..+..++..+.++..++..
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~ 164 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 164 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGC
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccc
Confidence 112345667777664 3689999999999876643 2334456778888877643
No 30
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.45 E-value=1.2e-13 Score=115.57 Aligned_cols=107 Identities=26% Similarity=0.435 Sum_probs=71.3
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCC-----
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSER----- 190 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~----- 190 (244)
+.+|+++......++.+ +++...+..++.+..++.+.+++++|+||||||||++++++++.++.+...+.....
T Consensus 2 ~~~~~~i~G~~~~~~~l-~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEV-REFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCTTSSCSCHHHHHHH-HHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCHHHhCCHHHHHHHH-HHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 45788988887776665 444455788888888999999999999999999999999999999888777776541
Q ss_pred CCCHHHHHHHhhhcC--CCCceehhhHhhhhcccC
Q psy1371 191 GLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTRE 223 (244)
Q Consensus 191 ~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~ 223 (244)
+.....++..+..+. +++++|+||+|.+...+.
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~ 115 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRS 115 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC--------
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhcccc
Confidence 122345566665553 468999999999987664
No 31
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.44 E-value=1.4e-13 Score=125.99 Aligned_cols=126 Identities=25% Similarity=0.335 Sum_probs=100.0
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC-----C
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE-----R 190 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~-----~ 190 (244)
+..|+++.......+.+.+.+...+.+++++..++.+.+++++|+||||||||+++++++...+.+...++... .
T Consensus 200 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~ 279 (489)
T 3hu3_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (489)
T ss_dssp CCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCT
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhc
Confidence 45688888887777888888888899999999999999999999999999999999999999887776666433 2
Q ss_pred CCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCcCccc-HHHHHHHHHHhhh
Q psy1371 191 GLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREESSQG-LEDIDAAFVTREE 241 (244)
Q Consensus 191 ~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~~~~~-~~~~~~~~l~~~~ 241 (244)
+.....++..|..+. ++++||+||+|.+...+...... ..++.+.|++.++
T Consensus 280 g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld 333 (489)
T 3hu3_A 280 GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMD 333 (489)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhh
Confidence 233455677776664 46799999999999887654333 4577888888776
No 32
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.44 E-value=2.9e-13 Score=115.71 Aligned_cols=128 Identities=20% Similarity=0.313 Sum_probs=90.8
Q ss_pred CCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC---
Q psy1371 113 PKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE--- 189 (244)
Q Consensus 113 ~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~--- 189 (244)
..++..|+++......++.+.+.+.....+++.+.... .++++++|+|||||||||+++++++.+..+...+....
T Consensus 14 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 92 (297)
T 3b9p_A 14 GGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTS 92 (297)
T ss_dssp CSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSS
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhh
Confidence 34567899999888887778777877777888776554 45688999999999999999999999987776666544
Q ss_pred --CCCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCcCc-ccHHHHHHHHHHhhh
Q psy1371 190 --RGLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREESS-QGLEDIDAAFVTREE 241 (244)
Q Consensus 190 --~~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~~~-~~~~~~~~~~l~~~~ 241 (244)
.+.....++..+..+. +++++|+||+|.+...+.... ....++.+.++..++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~ 149 (297)
T 3b9p_A 93 KYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFD 149 (297)
T ss_dssp SSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHh
Confidence 1223445666665553 578999999999987664321 122445555555443
No 33
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.43 E-value=1.7e-13 Score=132.52 Aligned_cols=128 Identities=25% Similarity=0.326 Sum_probs=100.7
Q ss_pred CCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC----
Q psy1371 114 KRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE---- 189 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~---- 189 (244)
.+++.|+++......++.+.+.+...+.+++++++++++++++++|+|||||||||++++|++.++.+...++...
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 3457788888888888889899999999999999999999999999999999999999999999987766665322
Q ss_pred -CCCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCcCccc-HHHHHHHHHHhhh
Q psy1371 190 -RGLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREESSQG-LEDIDAAFVTREE 241 (244)
Q Consensus 190 -~~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~~~~~-~~~~~~~~l~~~~ 241 (244)
.+.....++..|..+. .++++|+||+|.++..++..... ..++.+.+++.++
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~ 333 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMD 333 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhh
Confidence 2223345666666553 46899999999999887655444 3577777777765
No 34
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.43 E-value=5.2e-13 Score=113.41 Aligned_cols=125 Identities=24% Similarity=0.438 Sum_probs=87.7
Q ss_pred CCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCC----
Q psy1371 115 RRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSER---- 190 (244)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~---- 190 (244)
++.+|+++......+.. ++++...+..+..++++++..++|++|+||||||||||+++|++..... .+.+++.
T Consensus 35 ~~~~~~~i~g~~~~~~~-l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~--~i~~~~~~~~~ 111 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEE-LKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP--FITASGSDFVE 111 (278)
T ss_dssp CCCCGGGSSSCHHHHHH-HHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEHHHHHH
T ss_pred CCCCHHHhCChHHHHHH-HHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCC--EEEecHHHHHH
Confidence 56789999888776654 4777778888888989999999999999999999999999999998744 4444431
Q ss_pred ---CCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCc----CcccHHHHHHHHHHhhhc
Q psy1371 191 ---GLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREE----SSQGLEDIDAAFVTREES 242 (244)
Q Consensus 191 ---~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~----~~~~~~~~~~~~l~~~~~ 242 (244)
+.....++..+..+. .++++++||+|.+...+.. ......+....++..++.
T Consensus 112 ~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsg 172 (278)
T 1iy2_A 112 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 172 (278)
T ss_dssp STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhC
Confidence 111233445555442 4578999999998765532 122344566667766654
No 35
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.42 E-value=5.9e-15 Score=125.71 Aligned_cols=116 Identities=12% Similarity=0.159 Sum_probs=81.7
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC--CH
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL--TD 194 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~--~~ 194 (244)
++++++++.|+....+++++ ++.++.++-++|+||||||||||+++|+|++.|+.|.|.+++.+. ..
T Consensus 8 l~i~~ls~~y~~~~~~L~~i-----------sl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~ 76 (275)
T 3gfo_A 8 LKVEELNYNYSDGTHALKGI-----------NMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSR 76 (275)
T ss_dssp EEEEEEEEECTTSCEEEEEE-----------EEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSH
T ss_pred EEEEEEEEEECCCCeEEEee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCccc
Confidence 55778888875433366777 778888888999999999999999999999999999999999655 22
Q ss_pred ---HHHHHHhhhcCCCC--ceehhhH-hhhh---cccCcCcccHHHHHHHHHHhhhcC
Q psy1371 195 ---DRLNHLLSVAPQNS--IILLEDI-DAAF---VTREESSQGLEDIDAAFVTREESS 243 (244)
Q Consensus 195 ---~~~~~~~~~~~q~~--~lf~dei-d~~~---~~r~~~~~~~~~~~~~~l~~~~~~ 243 (244)
..+++.+++++|++ .+|..++ |++. ..++.......+....++.++++.
T Consensus 77 ~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~ 134 (275)
T 3gfo_A 77 KGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIE 134 (275)
T ss_dssp HHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG
T ss_pred ccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc
Confidence 34667799999975 3442233 3333 222223333445566677777653
No 36
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.42 E-value=1.3e-13 Score=125.01 Aligned_cols=129 Identities=23% Similarity=0.372 Sum_probs=93.3
Q ss_pred CCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhccc-CCCeEEEEeCC--
Q psy1371 113 PKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGEL-EFGICVLNLSE-- 189 (244)
Q Consensus 113 ~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~-~~~~g~i~~~~-- 189 (244)
..++..|+++......++.+.+.+...+.+++++.. +..++++++|+||||||||++++++++.+ ..+...+...+
T Consensus 127 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~ 205 (444)
T 2zan_A 127 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 205 (444)
T ss_dssp CCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence 355678999988888888888888888888888743 35567899999999999999999999988 55444444332
Q ss_pred ---CCCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCcCc-ccHHHHHHHHHHhhhc
Q psy1371 190 ---RGLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREESS-QGLEDIDAAFVTREES 242 (244)
Q Consensus 190 ---~~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~~~-~~~~~~~~~~l~~~~~ 242 (244)
.+.++..++..|..+. +++++|+||+|.+...|.... ....++.+.|+..++.
T Consensus 206 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~ 264 (444)
T 2zan_A 206 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQG 264 (444)
T ss_dssp ------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTC
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhC
Confidence 1222334566666553 578999999999987765432 3346778888887753
No 37
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.40 E-value=4.9e-13 Score=117.80 Aligned_cols=128 Identities=19% Similarity=0.278 Sum_probs=93.1
Q ss_pred CCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCC--
Q psy1371 113 PKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSER-- 190 (244)
Q Consensus 113 ~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~-- 190 (244)
..++..|+++......++.+.+.+...+..++.+.... ..+++++|+||||||||+++++++..++.+...+.....
T Consensus 77 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~ 155 (357)
T 3d8b_A 77 HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 155 (357)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhc
Confidence 34567899998888888888888888788888775554 567889999999999999999999999887777766541
Q ss_pred ---CCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCcCc-ccHHHHHHHHHHhhh
Q psy1371 191 ---GLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREESS-QGLEDIDAAFVTREE 241 (244)
Q Consensus 191 ---~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~~~-~~~~~~~~~~l~~~~ 241 (244)
+.....++..+..+. +++++|+||+|.+...+.... ....++.+.++..++
T Consensus 156 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~ 212 (357)
T 3d8b_A 156 KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLD 212 (357)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHh
Confidence 223345666666553 578999999999987764332 234466677776665
No 38
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.39 E-value=3.4e-14 Score=119.20 Aligned_cols=95 Identities=17% Similarity=0.174 Sum_probs=74.7
Q ss_pred CCCCCccccChh-HHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC--
Q psy1371 116 RRPLNSVVLDSG-VADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL-- 192 (244)
Q Consensus 116 ~~~~~~v~~~~~-~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~-- 192 (244)
.+.+++|++.|. ....+++++ ++.++.++-++|+||||||||||+++|+|++.|+.|.+.+++.+.
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~v-----------sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~ 75 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNI-----------NLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLAL 75 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEE-----------EEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT
T ss_pred ceeEEEEEEEeCCCCcceeeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhh
Confidence 456788888872 223466777 788888888999999999999999999999999999999998543
Q ss_pred -CHHHHHHHhhhcCCCCceehhhH-hhhhcc
Q psy1371 193 -TDDRLNHLLSVAPQNSIILLEDI-DAAFVT 221 (244)
Q Consensus 193 -~~~~~~~~~~~~~q~~~lf~dei-d~~~~~ 221 (244)
+...+++.+++++|++.+|..++ |++...
T Consensus 76 ~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~ 106 (247)
T 2ff7_A 76 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLA 106 (247)
T ss_dssp SCHHHHHHHEEEECSSCCCTTSBHHHHHTTT
T ss_pred CCHHHHHhcEEEEeCCCccccccHHHHHhcc
Confidence 34567788999999887775566 666543
No 39
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.39 E-value=1.7e-13 Score=117.65 Aligned_cols=94 Identities=15% Similarity=0.150 Sum_probs=62.7
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC-----CCCCHHHHHHHhhhc------CCCCceehhhHh
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE-----RGLTDDRLNHLLSVA------PQNSIILLEDID 216 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~-----~~~~~~~~~~~~~~~------~q~~~lf~deid 216 (244)
..+.+.+++++|+||||||||++++++|+.++.+...++.++ .+.+...+++.|..+ .+++++|+||+|
T Consensus 30 ~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD 109 (293)
T 3t15_A 30 LPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLD 109 (293)
T ss_dssp CTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechh
Confidence 346677889999999999999999999999998888877544 233445667777666 257999999999
Q ss_pred hhhcccCcCcc---cHHHHHHHHHHhhh
Q psy1371 217 AAFVTREESSQ---GLEDIDAAFVTREE 241 (244)
Q Consensus 217 ~~~~~r~~~~~---~~~~~~~~~l~~~~ 241 (244)
.+...++.... ....+.+.++..+|
T Consensus 110 ~~~~~~~~~~~~~~~~~~v~~~Ll~~ld 137 (293)
T 3t15_A 110 AGAGRMGGTTQYTVNNQMVNATLMNIAD 137 (293)
T ss_dssp --------------CHHHHHHHHHHHHH
T ss_pred hhcCCCCCCccccchHHHHHHHHHHHhc
Confidence 98875543222 23456677777665
No 40
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.38 E-value=8.5e-13 Score=117.44 Aligned_cols=128 Identities=20% Similarity=0.325 Sum_probs=90.5
Q ss_pred CCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC---
Q psy1371 113 PKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE--- 189 (244)
Q Consensus 113 ~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~--- 189 (244)
..++..|+++......++.+.+.+.....+++++...+ .++++++|+||||||||+++++++..++.+...+....
T Consensus 108 ~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 186 (389)
T 3vfd_A 108 NGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTS 186 (389)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC--
T ss_pred cCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhc
Confidence 34567899999988888888888888778888776665 44688999999999999999999999887766665544
Q ss_pred --CCCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCcC-cccHHHHHHHHHHhhh
Q psy1371 190 --RGLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREES-SQGLEDIDAAFVTREE 241 (244)
Q Consensus 190 --~~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~~-~~~~~~~~~~~l~~~~ 241 (244)
.+.....++..|..+. ++++||+||+|.+...+... .....++...++..++
T Consensus 187 ~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~ 243 (389)
T 3vfd_A 187 KYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFD 243 (389)
T ss_dssp -----CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhh
Confidence 2234455666666553 56899999999997765432 2234566667766654
No 41
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.38 E-value=3e-14 Score=117.82 Aligned_cols=115 Identities=13% Similarity=0.068 Sum_probs=77.4
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC---C
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL---T 193 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~---~ 193 (244)
+.++++++.|+. ..+++++ ++.++.++-++|+||||||||||+++|+|++.|+.|.+.+++.+. +
T Consensus 5 l~~~~l~~~y~~-~~~l~~v-----------sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~ 72 (224)
T 2pcj_A 5 LRAENIKKVIRG-YEILKGI-----------SLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTN 72 (224)
T ss_dssp EEEEEEEEEETT-EEEEEEE-----------EEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSC
T ss_pred EEEEeEEEEECC-EeeEeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCC
Confidence 346677777653 2356666 777888888999999999999999999999999999999998543 2
Q ss_pred HH---HHH-HHhhhcCCCCceehh-hH-hhhhc---ccCcCcccHHHHHHHHHHhhhcC
Q psy1371 194 DD---RLN-HLLSVAPQNSIILLE-DI-DAAFV---TREESSQGLEDIDAAFVTREESS 243 (244)
Q Consensus 194 ~~---~~~-~~~~~~~q~~~lf~d-ei-d~~~~---~r~~~~~~~~~~~~~~l~~~~~~ 243 (244)
.. .++ +.+++++|++.++.+ ++ |++.. .++......++....+++++++.
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 131 (224)
T 2pcj_A 73 EKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLG 131 (224)
T ss_dssp HHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCc
Confidence 22 233 679999998766532 22 33322 12212222334455677777653
No 42
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.38 E-value=3.1e-14 Score=125.40 Aligned_cols=117 Identities=11% Similarity=0.109 Sum_probs=84.4
Q ss_pred CCCCCccccChhHH---HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC
Q psy1371 116 RRPLNSVVLDSGVA---DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL 192 (244)
Q Consensus 116 ~~~~~~v~~~~~~~---~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~ 192 (244)
-++++++++.|+.. ..+++++ ++.++.++-++|+||||||||||+|+|+|++.|+.|.|.+++.+.
T Consensus 24 mi~v~~ls~~y~~~~~~~~aL~~v-----------sl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i 92 (366)
T 3tui_C 24 MIKLSNITKVFHQGTRTIQALNNV-----------SLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQEL 92 (366)
T ss_dssp CEEEEEEEEEEECSSSEEEEEEEE-----------EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred eEEEEeEEEEeCCCCCCeEEEEee-----------EEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEEC
Confidence 46788998887531 2356777 788888888999999999999999999999999999999999544
Q ss_pred ---CHHH---HHHHhhhcCCCCcee-----hhhHhhhhcccCcCcccHHHHHHHHHHhhhcC
Q psy1371 193 ---TDDR---LNHLLSVAPQNSIIL-----LEDIDAAFVTREESSQGLEDIDAAFVTREESS 243 (244)
Q Consensus 193 ---~~~~---~~~~~~~~~q~~~lf-----~deid~~~~~r~~~~~~~~~~~~~~l~~~~~~ 243 (244)
+... +|+.+++++|+..++ .|++......++......++....+|.++++.
T Consensus 93 ~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~ 154 (366)
T 3tui_C 93 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG 154 (366)
T ss_dssp SSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG
T ss_pred CcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc
Confidence 3333 456799999987666 33443322223333344455667778887763
No 43
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.37 E-value=5.4e-14 Score=119.03 Aligned_cols=115 Identities=15% Similarity=0.174 Sum_probs=81.7
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC---
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL--- 192 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~--- 192 (244)
-++++++.+.|+. ..+++++ ++.++.++-++|+||||||||||+++|+|++.|+.|.+.+++.+.
T Consensus 24 ~l~i~~l~~~y~~-~~vL~~v-----------sl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~ 91 (263)
T 2olj_A 24 MIDVHQLKKSFGS-LEVLKGI-----------NVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAK 91 (263)
T ss_dssp SEEEEEEEEEETT-EEEEEEE-----------EEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSST
T ss_pred eEEEEeEEEEECC-EEEEEee-----------EEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCc
Confidence 3678888888853 2466777 788888888999999999999999999999999999999998543
Q ss_pred --CHHHHHHHhhhcCCCCceehh-hH-hhhhc----ccCcCcccHHHHHHHHHHhhhc
Q psy1371 193 --TDDRLNHLLSVAPQNSIILLE-DI-DAAFV----TREESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 193 --~~~~~~~~~~~~~q~~~lf~d-ei-d~~~~----~r~~~~~~~~~~~~~~l~~~~~ 242 (244)
....+++.+++++|+..+|.+ ++ |++.. .++......++....+++++++
T Consensus 92 ~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L 149 (263)
T 2olj_A 92 DTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGL 149 (263)
T ss_dssp TCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTC
T ss_pred cccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 234567789999998766532 33 44332 1122222233445567777765
No 44
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.36 E-value=8.6e-14 Score=115.89 Aligned_cols=113 Identities=13% Similarity=0.092 Sum_probs=75.2
Q ss_pred CCccccChhHH---HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC---
Q psy1371 119 LNSVVLDSGVA---DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL--- 192 (244)
Q Consensus 119 ~~~v~~~~~~~---~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~--- 192 (244)
++++++.|+.. ..+++++ ++.++.++-++|+||||||||||+++|+|++.|+.|.+.+++.+.
T Consensus 4 ~~~l~~~y~~~~~~~~~L~~i-----------sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~ 72 (235)
T 3tif_A 4 LKNVTKTYKMGEEIIYALKNV-----------NLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDL 72 (235)
T ss_dssp EEEEEEEEEETTEEEEEEEEE-----------EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTC
T ss_pred EEEEEEEeCCCCcceeeEEee-----------eEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccC
Confidence 45666665421 1255666 778888888999999999999999999999999999999998433
Q ss_pred CHHH----HHHHhhhcCCCCceehh-hH-hhhhcc---c---CcCcccHHHHHHHHHHhhhc
Q psy1371 193 TDDR----LNHLLSVAPQNSIILLE-DI-DAAFVT---R---EESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 193 ~~~~----~~~~~~~~~q~~~lf~d-ei-d~~~~~---r---~~~~~~~~~~~~~~l~~~~~ 242 (244)
+... .++.+++++|++.++.. ++ |++... + ........+....++.++++
T Consensus 73 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 134 (235)
T 3tif_A 73 DDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL 134 (235)
T ss_dssp CHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCC
Confidence 3332 24569999998776633 33 444321 1 11222333444556666654
No 45
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.35 E-value=2.5e-13 Score=131.33 Aligned_cols=128 Identities=19% Similarity=0.346 Sum_probs=99.0
Q ss_pred CCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC----
Q psy1371 114 KRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE---- 189 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~---- 189 (244)
.+...|+++......++.+.+.+...+.+++.+.++++.++++++|+|||||||||+++++++.++.+...+...+
T Consensus 471 ~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~ 550 (806)
T 1ypw_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTC
T ss_pred CccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhh
Confidence 3456788888777777777777766777888888899999999999999999999999999999987665555433
Q ss_pred -CCCCHHHHHHHhhhcC--CCCceehhhHhhhhcccCcCc----ccHHHHHHHHHHhhh
Q psy1371 190 -RGLTDDRLNHLLSVAP--QNSIILLEDIDAAFVTREESS----QGLEDIDAAFVTREE 241 (244)
Q Consensus 190 -~~~~~~~~~~~~~~~~--q~~~lf~deid~~~~~r~~~~----~~~~~~~~~~l~~~~ 241 (244)
.+.++..++..|..+. .++++|+||+|.++..|.... ...+++.+++|+.+|
T Consensus 551 ~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld 609 (806)
T 1ypw_A 551 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMD 609 (806)
T ss_dssp CTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC
T ss_pred hcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHh
Confidence 2344567777777765 468999999999988775432 235677888888776
No 46
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.35 E-value=8.9e-14 Score=117.65 Aligned_cols=114 Identities=11% Similarity=0.097 Sum_probs=79.8
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT--- 193 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~--- 193 (244)
++++++++.|+. ..+++++ ++.++.++-++|+||||||||||+++|+|++.|+.|.+.+++.+..
T Consensus 7 l~i~~l~~~y~~-~~vl~~v-----------sl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~ 74 (262)
T 1b0u_A 7 LHVIDLHKRYGG-HEVLKGV-----------SLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVR 74 (262)
T ss_dssp EEEEEEEEEETT-EEEEEEE-----------EEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEE
T ss_pred EEEeeEEEEECC-EEEEEee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccc
Confidence 567788877753 2456777 7788888889999999999999999999999999999999985443
Q ss_pred ----------H---HHHHHHhhhcCCCCceehh-hH-hhhhc----ccCcCcccHHHHHHHHHHhhhc
Q psy1371 194 ----------D---DRLNHLLSVAPQNSIILLE-DI-DAAFV----TREESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 194 ----------~---~~~~~~~~~~~q~~~lf~d-ei-d~~~~----~r~~~~~~~~~~~~~~l~~~~~ 242 (244)
. ..+++.+++++|+..+|.+ ++ |++.. .++......++....+++++++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L 142 (262)
T 1b0u_A 75 DKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGI 142 (262)
T ss_dssp CTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC
T ss_pred cccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 2 2456789999998766532 23 44332 1121222233445567777765
No 47
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.35 E-value=3.4e-14 Score=116.74 Aligned_cols=110 Identities=13% Similarity=0.117 Sum_probs=78.6
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHH
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDD 195 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~ 195 (244)
.++++++++.|+. .+++++ ++.++.++-++|+||||||||||+++|+|++.|+.|.+.+++.+..
T Consensus 10 ~l~~~~ls~~y~~--~il~~v-----------sl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-- 74 (214)
T 1sgw_A 10 KLEIRDLSVGYDK--PVLERI-----------TMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-- 74 (214)
T ss_dssp EEEEEEEEEESSS--EEEEEE-----------EEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG--
T ss_pred eEEEEEEEEEeCC--eEEeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh--
Confidence 3567788887754 466777 7788888889999999999999999999999999999999986554
Q ss_pred HHHHHhhhcCCCCceehh-hH-hhhhcc---cCcCcccHHHHHHHHHHhhhc
Q psy1371 196 RLNHLLSVAPQNSIILLE-DI-DAAFVT---REESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 196 ~~~~~~~~~~q~~~lf~d-ei-d~~~~~---r~~~~~~~~~~~~~~l~~~~~ 242 (244)
..++.+++++|++.+|.+ ++ |++... ++. ... ++....+++++++
T Consensus 75 ~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~-~~~~~~~l~~~gl 124 (214)
T 1sgw_A 75 KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVN-KNEIMDALESVEV 124 (214)
T ss_dssp GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCC-HHHHHHHHHHTTC
T ss_pred hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-chH-HHHHHHHHHHcCC
Confidence 346678999998766632 33 443321 111 122 3334556676665
No 48
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.35 E-value=7.3e-14 Score=117.77 Aligned_cols=117 Identities=15% Similarity=0.148 Sum_probs=81.2
Q ss_pred CCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC
Q psy1371 114 KRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT 193 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~ 193 (244)
.+.++++++++.|+. ..+++++ ++.++.|+-++|+||||||||||+++|+|++.|+.|.+.+++.+..
T Consensus 13 ~~~l~i~~l~~~y~~-~~vl~~v-----------sl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~ 80 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGK-KEILKGI-----------SFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVV 80 (256)
T ss_dssp -CCEEEEEEEEEETT-EEEEEEE-----------EEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETT
T ss_pred CCeEEEEEEEEEECC-EEEEEee-----------EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECC
Confidence 445778888888853 3466777 7888888889999999999999999999999999999999985442
Q ss_pred --HHHHHHHhhhcCCCCceehh-hH-hhhhc---ccCcCcccHHHHHHHHHHhhhc
Q psy1371 194 --DDRLNHLLSVAPQNSIILLE-DI-DAAFV---TREESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 194 --~~~~~~~~~~~~q~~~lf~d-ei-d~~~~---~r~~~~~~~~~~~~~~l~~~~~ 242 (244)
...+++.+++++|++.++.+ ++ |++.. .++......++....+++++++
T Consensus 81 ~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL 136 (256)
T 1vpl_A 81 EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGL 136 (256)
T ss_dssp TCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
T ss_pred ccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC
Confidence 34466778999998766532 33 33322 1121222223344556666655
No 49
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.35 E-value=1.6e-14 Score=127.07 Aligned_cols=115 Identities=16% Similarity=0.168 Sum_probs=81.4
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC----
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL---- 192 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~---- 192 (244)
++++++++.|+. ..+++++ ++.++.++-++|+||||||||||+|+|+|+..|+.|.|.+++.+.
T Consensus 5 l~i~~ls~~y~~-~~~L~~v-----------sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~ 72 (359)
T 3fvq_A 5 LHIGHLSKSFQN-TPVLNDI-----------SLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKN 72 (359)
T ss_dssp EEEEEEEEEETT-EEEEEEE-----------EEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSS
T ss_pred EEEEeEEEEECC-EEEEEee-----------EEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccc
Confidence 456777777754 3456777 778888888999999999999999999999999999999998543
Q ss_pred C-HHHHHHHhhhcCCCCceehh-hH-hhhhc---ccCcCcccHHHHHHHHHHhhhcC
Q psy1371 193 T-DDRLNHLLSVAPQNSIILLE-DI-DAAFV---TREESSQGLEDIDAAFVTREESS 243 (244)
Q Consensus 193 ~-~~~~~~~~~~~~q~~~lf~d-ei-d~~~~---~r~~~~~~~~~~~~~~l~~~~~~ 243 (244)
. ....++.+++++|+..+|.. ++ |+++. .+.......++....+++++++.
T Consensus 73 ~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~ 129 (359)
T 3fvq_A 73 TNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGIS 129 (359)
T ss_dssp CBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCG
T ss_pred cccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCc
Confidence 1 12235679999998777732 33 44443 23333344455566777777653
No 50
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.34 E-value=1.1e-13 Score=115.50 Aligned_cols=112 Identities=15% Similarity=0.227 Sum_probs=76.9
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC---C
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL---T 193 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~---~ 193 (244)
++++++.+.|+. ..+++++ ++.++.++-++|+||||||||||+|+|+|++.|+.|.+.+++.+. +
T Consensus 7 l~~~~l~~~y~~-~~vl~~v-----------sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~ 74 (240)
T 1ji0_A 7 LEVQSLHVYYGA-IHAIKGI-----------DLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKP 74 (240)
T ss_dssp EEEEEEEEEETT-EEEEEEE-----------EEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCC
T ss_pred EEEEeEEEEECC-eeEEeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC
Confidence 456778777754 2356666 777888888999999999999999999999999999999998544 2
Q ss_pred HHHH-HHHhhhcCCCCceehh-hH-hhhhccc--CcCcccHHHHHHHHHHhh
Q psy1371 194 DDRL-NHLLSVAPQNSIILLE-DI-DAAFVTR--EESSQGLEDIDAAFVTRE 240 (244)
Q Consensus 194 ~~~~-~~~~~~~~q~~~lf~d-ei-d~~~~~r--~~~~~~~~~~~~~~l~~~ 240 (244)
.... ++.+++++|++.+|.+ ++ |++...+ .......++....+++++
T Consensus 75 ~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~ 126 (240)
T 1ji0_A 75 AHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLF 126 (240)
T ss_dssp HHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHC
T ss_pred HHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHc
Confidence 3333 3448999998766643 34 4443322 111223333445566665
No 51
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.33 E-value=2.5e-14 Score=126.70 Aligned_cols=115 Identities=17% Similarity=0.182 Sum_probs=81.2
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHH-
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDD- 195 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~- 195 (244)
++++++.+.|+. ..+++++ ++.++.++-++|+||||||||||+|+|+|++.++.|.|.+++.+....
T Consensus 4 l~~~~l~~~yg~-~~~L~~v-----------sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~ 71 (381)
T 3rlf_A 4 VQLQNVTKAWGE-VVVSKDI-----------NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTP 71 (381)
T ss_dssp EEEEEEEEEETT-EEEEEEE-----------EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC
T ss_pred EEEEeEEEEECC-EEEEeee-----------EEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCC
Confidence 456677777753 2356677 778888888999999999999999999999999999999998544321
Q ss_pred HHHHHhhhcCCCCceehh-hH-hhhh---cccCcCcccHHHHHHHHHHhhhcC
Q psy1371 196 RLNHLLSVAPQNSIILLE-DI-DAAF---VTREESSQGLEDIDAAFVTREESS 243 (244)
Q Consensus 196 ~~~~~~~~~~q~~~lf~d-ei-d~~~---~~r~~~~~~~~~~~~~~l~~~~~~ 243 (244)
..++.+++++|+..+|.. ++ |+++ ..+.......++....+++++++.
T Consensus 72 ~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~ 124 (381)
T 3rlf_A 72 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLA 124 (381)
T ss_dssp GGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCG
T ss_pred HHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc
Confidence 123568999998777632 23 4443 333334444555667777777653
No 52
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.33 E-value=9.7e-14 Score=117.07 Aligned_cols=83 Identities=19% Similarity=0.210 Sum_probs=66.1
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT--- 193 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~--- 193 (244)
++++++.+.|+. ..+++++ ++.++.++-++|+||||||||||+|+|+|++.|+.|.+.+++.+..
T Consensus 8 l~i~~l~~~y~~-~~vl~~v-----------sl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~ 75 (257)
T 1g6h_A 8 LRTENIVKYFGE-FKALDGV-----------SISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKE 75 (257)
T ss_dssp EEEEEEEEEETT-EEEEEEE-----------CCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCC
T ss_pred EEEeeeEEEECC-EeeEeee-----------EEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC
Confidence 567788887754 2356666 7777888889999999999999999999999999999999985442
Q ss_pred H-HHHHHHhhhcCCCCcee
Q psy1371 194 D-DRLNHLLSVAPQNSIIL 211 (244)
Q Consensus 194 ~-~~~~~~~~~~~q~~~lf 211 (244)
. ...++.+++++|++.+|
T Consensus 76 ~~~~~~~~i~~v~q~~~l~ 94 (257)
T 1g6h_A 76 PAELYHYGIVRTFQTPQPL 94 (257)
T ss_dssp HHHHHHHTEEECCCCCGGG
T ss_pred HHHHHhCCEEEEccCCccC
Confidence 2 23466799999987665
No 53
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.32 E-value=2.1e-13 Score=115.64 Aligned_cols=115 Identities=16% Similarity=0.150 Sum_probs=81.8
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC---C
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL---T 193 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~---~ 193 (244)
++++++++.|+. ..+++++ ++.++.++-++|+||||||||||+|+|+|++.++.|.+.+++.+. +
T Consensus 12 l~~~~l~~~~~~-~~vL~~v-----------sl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~ 79 (266)
T 4g1u_C 12 LEASHLHYHVQQ-QALINDV-----------SLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQ 79 (266)
T ss_dssp EEEEEEEEEETT-EEEEEEE-----------EEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSC
T ss_pred EEEEeEEEEeCC-eeEEEee-----------EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCC
Confidence 567888888764 3466777 788888888999999999999999999999999999999998543 4
Q ss_pred HHHHHHHhhhcCCCCcee-hhhH-hhhhcccC-cCcccHHHHHHHHHHhhhcC
Q psy1371 194 DDRLNHLLSVAPQNSIIL-LEDI-DAAFVTRE-ESSQGLEDIDAAFVTREESS 243 (244)
Q Consensus 194 ~~~~~~~~~~~~q~~~lf-~dei-d~~~~~r~-~~~~~~~~~~~~~l~~~~~~ 243 (244)
...+++.+++++|+..++ .-.+ |++...+. ......++....++.++++.
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~ 132 (266)
T 4g1u_C 80 PKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCL 132 (266)
T ss_dssp HHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCS
T ss_pred HHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCCh
Confidence 556778899999876553 2233 44433221 12223344455667776653
No 54
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.32 E-value=3.6e-14 Score=124.75 Aligned_cols=115 Identities=14% Similarity=0.129 Sum_probs=80.8
Q ss_pred CCCCCccccCh-hHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH
Q psy1371 116 RRPLNSVVLDS-GVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD 194 (244)
Q Consensus 116 ~~~~~~v~~~~-~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~ 194 (244)
.+.++++.+.| +. ..+++++ ++.++.++-++|+||||||||||+|+|+|+..|+.|.|.+++.+.+.
T Consensus 14 ~l~~~~l~~~y~g~-~~vl~~v-----------sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~ 81 (355)
T 1z47_A 14 TIEFVGVEKIYPGG-ARSVRGV-----------SFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTD 81 (355)
T ss_dssp EEEEEEEEECCTTS-TTCEEEE-----------EEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTT
T ss_pred eEEEEEEEEEEcCC-CEEEeee-----------EEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCc
Confidence 36678888888 43 3456777 77788888899999999999999999999999999999999854432
Q ss_pred -HHHHHHhhhcCCCCcee-----hhhHhhhhcccCcCcccHHHHHHHHHHhhhc
Q psy1371 195 -DRLNHLLSVAPQNSIIL-----LEDIDAAFVTREESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 195 -~~~~~~~~~~~q~~~lf-----~deid~~~~~r~~~~~~~~~~~~~~l~~~~~ 242 (244)
...++.+++++|+..+| .|++......++......++....+++++++
T Consensus 82 ~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL 135 (355)
T 1z47_A 82 LPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRL 135 (355)
T ss_dssp CCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTC
T ss_pred CChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 12346689999987666 3444332222222333334455667777765
No 55
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.32 E-value=1.3e-13 Score=117.28 Aligned_cols=94 Identities=15% Similarity=0.123 Sum_probs=75.6
Q ss_pred CCCCCccccChhH--HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC-
Q psy1371 116 RRPLNSVVLDSGV--ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL- 192 (244)
Q Consensus 116 ~~~~~~v~~~~~~--~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~- 192 (244)
.+.+++|++.|+. ...+++++ ++.++.++-++|+||||||||||+++|+|++.|+.|.|.+++.+.
T Consensus 16 ~l~~~~l~~~y~~~~~~~vl~~v-----------sl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~ 84 (271)
T 2ixe_A 16 LVKFQDVSFAYPNHPNVQVLQGL-----------TFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLV 84 (271)
T ss_dssp CEEEEEEEECCTTCTTSCCEEEE-----------EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG
T ss_pred eEEEEEEEEEeCCCCCceeeEee-----------EEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 4778999998854 13466777 788888888999999999999999999999999999999998543
Q ss_pred --CHHHHHHHhhhcCCCCceehhhH-hhhhc
Q psy1371 193 --TDDRLNHLLSVAPQNSIILLEDI-DAAFV 220 (244)
Q Consensus 193 --~~~~~~~~~~~~~q~~~lf~dei-d~~~~ 220 (244)
+...+++.+++++|++.+|-..+ |++..
T Consensus 85 ~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~ 115 (271)
T 2ixe_A 85 QYDHHYLHTQVAAVGQEPLLFGRSFRENIAY 115 (271)
T ss_dssp GBCHHHHHHHEEEECSSCCCCSSBHHHHHHT
T ss_pred cCCHHHHhccEEEEecCCccccccHHHHHhh
Confidence 34567788999999887775555 56544
No 56
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.31 E-value=9.5e-14 Score=117.71 Aligned_cols=95 Identities=15% Similarity=0.086 Sum_probs=66.1
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHhhhcCCCC--ceehhhH-hhhhcccC-
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRLNHLLSVAPQNS--IILLEDI-DAAFVTRE- 223 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~q~~--~lf~dei-d~~~~~r~- 223 (244)
++.++.++-++|+||||||||||+++|+|++.|+.|.+.+++.+.....+++.+++++|++ .++...+ |++.....
T Consensus 27 sl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~ 106 (266)
T 2yz2_A 27 SLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKN 106 (266)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTT
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHh
Confidence 7778888889999999999999999999999999999999996665444566789999974 3342233 44432211
Q ss_pred -cCcccHHHHHHHHHHhhhc
Q psy1371 224 -ESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 224 -~~~~~~~~~~~~~l~~~~~ 242 (244)
......++....+++++++
T Consensus 107 ~~~~~~~~~~~~~~l~~~gl 126 (266)
T 2yz2_A 107 FYPDRDPVPLVKKAMEFVGL 126 (266)
T ss_dssp TCTTSCSHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHHcCc
Confidence 1112222334556666655
No 57
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.31 E-value=3.8e-13 Score=112.95 Aligned_cols=92 Identities=13% Similarity=0.153 Sum_probs=66.6
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC---CHHHHHHHhhhcCCCCceehh-hH-hhhhccc
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL---TDDRLNHLLSVAPQNSIILLE-DI-DAAFVTR 222 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~---~~~~~~~~~~~~~q~~~lf~d-ei-d~~~~~r 222 (244)
++.++.++-++|+||||||||||+++|+|++.++ |.+.+++.+. +...+++.+++++|++.+|.+ .+ |++...+
T Consensus 20 sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 98 (249)
T 2qi9_C 20 SGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQ 98 (249)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTC
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhh
Confidence 6777778889999999999999999999999999 9999998543 345677889999998766633 44 5554332
Q ss_pred CcCcccHHHHHHHHHHhhhc
Q psy1371 223 EESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 223 ~~~~~~~~~~~~~~l~~~~~ 242 (244)
.... . ++....+++++++
T Consensus 99 ~~~~-~-~~~~~~~l~~~~l 116 (249)
T 2qi9_C 99 HDKT-R-TELLNDVAGALAL 116 (249)
T ss_dssp SSTT-C-HHHHHHHHHHTTC
T ss_pred ccCC-c-HHHHHHHHHHcCC
Confidence 1111 1 3334556666654
No 58
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.30 E-value=3.8e-14 Score=118.57 Aligned_cols=93 Identities=17% Similarity=0.209 Sum_probs=70.1
Q ss_pred CCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH---
Q psy1371 118 PLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD--- 194 (244)
Q Consensus 118 ~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~--- 194 (244)
.++++++.|+....+++++ ++.+++++.++|+||||||||||+++|+|++.|+.|.+.+++.+...
T Consensus 3 ~~~~l~~~y~~~~~vl~~v-----------sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 71 (243)
T 1mv5_A 3 SARHVDFAYDDSEQILRDI-----------SFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISL 71 (243)
T ss_dssp EEEEEEECSSSSSCSEEEE-----------EEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSC
T ss_pred EEEEEEEEeCCCCceEEEe-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCH
Confidence 3556666663223356666 78888888899999999999999999999999999999998854322
Q ss_pred HHHHHHhhhcCCCCceehhhH-hhhhcc
Q psy1371 195 DRLNHLLSVAPQNSIILLEDI-DAAFVT 221 (244)
Q Consensus 195 ~~~~~~~~~~~q~~~lf~dei-d~~~~~ 221 (244)
..+++.+++++|++.+|-.++ |++...
T Consensus 72 ~~~~~~i~~v~q~~~l~~~tv~enl~~~ 99 (243)
T 1mv5_A 72 ENWRSQIGFVSQDSAIMAGTIRENLTYG 99 (243)
T ss_dssp SCCTTTCCEECCSSCCCCEEHHHHTTSC
T ss_pred HHHHhhEEEEcCCCccccccHHHHHhhh
Confidence 234667899999887775566 666543
No 59
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.30 E-value=7.2e-14 Score=123.20 Aligned_cols=115 Identities=17% Similarity=0.197 Sum_probs=78.8
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH-H
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD-D 195 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~-~ 195 (244)
++++++.+.|+. ..+++++ ++.++.++-++|+||||||||||+|+|+|++.|+.|.+.+++.+.+. .
T Consensus 4 l~~~~l~~~y~~-~~vl~~v-----------sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~ 71 (362)
T 2it1_A 4 IKLENIVKKFGN-FTALNNI-----------NLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELP 71 (362)
T ss_dssp EEEEEEEEESSS-SEEEEEE-----------EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC
T ss_pred EEEEeEEEEECC-EEEEEee-----------EEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCC
Confidence 345666666643 2355666 77788888899999999999999999999999999999999854432 1
Q ss_pred HHHHHhhhcCCCCceehh-hH-hhhhc---ccCcCcccHHHHHHHHHHhhhcC
Q psy1371 196 RLNHLLSVAPQNSIILLE-DI-DAAFV---TREESSQGLEDIDAAFVTREESS 243 (244)
Q Consensus 196 ~~~~~~~~~~q~~~lf~d-ei-d~~~~---~r~~~~~~~~~~~~~~l~~~~~~ 243 (244)
..++.+++++|+..+|.. ++ |++.. .++......++....+++++++.
T Consensus 72 ~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~ 124 (362)
T 2it1_A 72 PKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHID 124 (362)
T ss_dssp GGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT
T ss_pred HhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc
Confidence 124568999998777632 23 44432 22223333344556677777764
No 60
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.30 E-value=6.7e-14 Score=119.42 Aligned_cols=81 Identities=17% Similarity=0.225 Sum_probs=66.8
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC---
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT--- 193 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~--- 193 (244)
++++++.+.|+. ..+++++ ++.++.++.++|+||||||||||+|+|+|++.|+.|.+.+++.+..
T Consensus 22 l~~~~l~~~y~~-~~vL~~i-----------sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~ 89 (279)
T 2ihy_A 22 IQLDQIGRMKQG-KTILKKI-----------SWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVG 89 (279)
T ss_dssp EEEEEEEEEETT-EEEEEEE-----------EEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---
T ss_pred EEEEeEEEEECC-EEEEEee-----------eEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEccccc
Confidence 668888888864 3466777 7888888889999999999999999999999999999999986543
Q ss_pred --HHHHHHHhhhcCCCCc
Q psy1371 194 --DDRLNHLLSVAPQNSI 209 (244)
Q Consensus 194 --~~~~~~~~~~~~q~~~ 209 (244)
...+++.+++++|++.
T Consensus 90 ~~~~~~~~~i~~v~Q~~~ 107 (279)
T 2ihy_A 90 YSAETVRQHIGFVSHSLL 107 (279)
T ss_dssp CCHHHHHTTEEEECHHHH
T ss_pred CCHHHHcCcEEEEEcCcc
Confidence 3456677899998754
No 61
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.29 E-value=5.4e-13 Score=112.39 Aligned_cols=108 Identities=30% Similarity=0.480 Sum_probs=76.3
Q ss_pred CCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC----
Q psy1371 114 KRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE---- 189 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~---- 189 (244)
.++..|+++......++.+.+ +...+..++.+..++.+.+++++|+||||||||++++++++....+...+....
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVE-IVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHH-HHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred CCCCCHHHhCCcHHHHHHHHH-HHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 345678999888877776654 445578889998999999999999999999999999999998876655444322
Q ss_pred -CCCCHHHHHHHhhhc--CCCCceehhhHhhhhccc
Q psy1371 190 -RGLTDDRLNHLLSVA--PQNSIILLEDIDAAFVTR 222 (244)
Q Consensus 190 -~~~~~~~~~~~~~~~--~q~~~lf~deid~~~~~r 222 (244)
.+.....++..+..+ .+++++|+||+|.+...+
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~ 119 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSR 119 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC--
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccc
Confidence 111111222223222 256899999999987654
No 62
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.29 E-value=1.3e-13 Score=121.09 Aligned_cols=109 Identities=15% Similarity=0.158 Sum_probs=75.0
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH-HHH
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD-DRL 197 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~-~~~ 197 (244)
++++++.|+.. +++++ ++.++.++-++|+||||||||||+|+|+|++.|+.|.|.+++...+. ...
T Consensus 4 ~~~l~~~y~~~--~l~~v-----------sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~ 70 (348)
T 3d31_A 4 IESLSRKWKNF--SLDNL-----------SLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE 70 (348)
T ss_dssp EEEEEEECSSC--EEEEE-----------EEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH
T ss_pred EEEEEEEECCE--EEeee-----------EEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchh
Confidence 45566666432 55666 77788888899999999999999999999999999999999855432 234
Q ss_pred HHHhhhcCCCCceehh-hH-hhhhc---ccCcCcccHHHHHHHHHHhhhcC
Q psy1371 198 NHLLSVAPQNSIILLE-DI-DAAFV---TREESSQGLEDIDAAFVTREESS 243 (244)
Q Consensus 198 ~~~~~~~~q~~~lf~d-ei-d~~~~---~r~~~~~~~~~~~~~~l~~~~~~ 243 (244)
++.+++++|+..+|.. ++ |++.. .++.... +....+++++++.
T Consensus 71 ~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~---~~v~~~l~~~~L~ 118 (348)
T 3d31_A 71 KHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIE 118 (348)
T ss_dssp HHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCT
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHH---HHHHHHHHHcCCc
Confidence 6779999998777632 23 44332 2221111 3345566776653
No 63
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.28 E-value=6.7e-14 Score=123.30 Aligned_cols=114 Identities=15% Similarity=0.132 Sum_probs=77.0
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH-H
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD-D 195 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~-~ 195 (244)
+.++++.+.|+. ..+++++ ++.++.++-++|+||||||||||+|+|+|+..|+.|.|.+++.+.+. .
T Consensus 4 l~~~~l~~~y~~-~~vl~~v-----------sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~ 71 (359)
T 2yyz_A 4 IRVVNLKKYFGK-VKAVDGV-----------SFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIP 71 (359)
T ss_dssp EEEEEEEEEETT-EEEEEEE-----------EEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC
T ss_pred EEEEEEEEEECC-EEEEeee-----------EEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCC
Confidence 345667666643 2355666 77788888899999999999999999999999999999999854432 1
Q ss_pred HHHHHhhhcCCCCceehh-hH-hhhhcc---cCcCcccHHHHHHHHHHhhhc
Q psy1371 196 RLNHLLSVAPQNSIILLE-DI-DAAFVT---REESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 196 ~~~~~~~~~~q~~~lf~d-ei-d~~~~~---r~~~~~~~~~~~~~~l~~~~~ 242 (244)
..++.+++++|+..+|.. ++ |++... ++......++....+++++++
T Consensus 72 ~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L 123 (359)
T 2yyz_A 72 PKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLI 123 (359)
T ss_dssp GGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTC
T ss_pred hhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 124668999998777632 33 444432 221222223345566777665
No 64
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.28 E-value=8e-14 Score=123.34 Aligned_cols=115 Identities=15% Similarity=0.155 Sum_probs=76.4
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH-H
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD-D 195 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~-~ 195 (244)
+.++++.+.|+. ..+++++ ++.++.++-++|+||||||||||+|+|+|++.|+.|.+.+++...+. .
T Consensus 12 l~~~~l~~~y~~-~~vl~~v-----------sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~ 79 (372)
T 1v43_A 12 VKLENLTKRFGN-FTAVNKL-----------NLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLP 79 (372)
T ss_dssp EEEEEEEEEETT-EEEEEEE-----------EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC
T ss_pred EEEEEEEEEECC-EEEEeee-----------EEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCC
Confidence 567788887753 2356667 77888888899999999999999999999999999999999854432 1
Q ss_pred HHHHHhhhcCCCCceehh-hH-hhhhcc---cCcCcccHHHHHHHHHHhhhcC
Q psy1371 196 RLNHLLSVAPQNSIILLE-DI-DAAFVT---REESSQGLEDIDAAFVTREESS 243 (244)
Q Consensus 196 ~~~~~~~~~~q~~~lf~d-ei-d~~~~~---r~~~~~~~~~~~~~~l~~~~~~ 243 (244)
..++.+++++|+..+|.. ++ |++... ++......++....+++++++.
T Consensus 80 ~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~ 132 (372)
T 1v43_A 80 PKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE 132 (372)
T ss_dssp GGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCG
T ss_pred hhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh
Confidence 124568999998777632 33 454432 2222233344556677777653
No 65
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.28 E-value=2.3e-13 Score=121.06 Aligned_cols=93 Identities=18% Similarity=0.213 Sum_probs=75.9
Q ss_pred CCCCCCccccChh-HHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC-
Q psy1371 115 RRRPLNSVVLDSG-VADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL- 192 (244)
Q Consensus 115 ~~~~~~~v~~~~~-~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~- 192 (244)
..+.++++.+.|+ ....+++++ ++.++.++-++|+||||||||||+|+|+|++. +.|.|.+++.++
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~v-----------sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~ 85 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENI-----------SFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWD 85 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEE-----------EEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTT
T ss_pred CeEEEEEEEEEecCCCeEEeece-----------eEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECC
Confidence 4577899998884 223467777 88888888899999999999999999999998 899999999654
Q ss_pred --CHHHHHHHhhhcCCCCceehhhH-hhhh
Q psy1371 193 --TDDRLNHLLSVAPQNSIILLEDI-DAAF 219 (244)
Q Consensus 193 --~~~~~~~~~~~~~q~~~lf~dei-d~~~ 219 (244)
+...+++.+++++|+..+|-..+ |++.
T Consensus 86 ~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~ 115 (390)
T 3gd7_A 86 SITLEQWRKAFGVIPQKVFIFSGTFRKNLD 115 (390)
T ss_dssp SSCHHHHHHTEEEESCCCCCCSEEHHHHHC
T ss_pred cCChHHHhCCEEEEcCCcccCccCHHHHhh
Confidence 44567888999999988886566 6665
No 66
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.27 E-value=3.2e-13 Score=114.07 Aligned_cols=93 Identities=19% Similarity=0.284 Sum_probs=72.9
Q ss_pred CCCCCccccChhHH--HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC-
Q psy1371 116 RRPLNSVVLDSGVA--DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL- 192 (244)
Q Consensus 116 ~~~~~~v~~~~~~~--~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~- 192 (244)
.+.++++.+.|+.. ..+++++ ++.++.++.++|+||||||||||+++|+|++.+ .|.+.+++.+.
T Consensus 17 ~l~i~~l~~~y~~~~~~~vl~~v-----------sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~ 84 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQTNHRTLKSI-----------NFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVN 84 (260)
T ss_dssp CEEEEEEEECCTTCCSSCSEEEE-----------EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGG
T ss_pred eEEEEEEEEEeCCCCcCceeEee-----------EEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhh
Confidence 36678888888542 2356666 788888888999999999999999999999985 89999998543
Q ss_pred --CHHHHHHHhhhcCCCCceehhhH-hhhhc
Q psy1371 193 --TDDRLNHLLSVAPQNSIILLEDI-DAAFV 220 (244)
Q Consensus 193 --~~~~~~~~~~~~~q~~~lf~dei-d~~~~ 220 (244)
+...+++.+++++|++.+|-.++ |++..
T Consensus 85 ~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~ 115 (260)
T 2ghi_A 85 KYNRNSIRSIIGIVPQDTILFNETIKYNILY 115 (260)
T ss_dssp GBCHHHHHTTEEEECSSCCCCSEEHHHHHHT
T ss_pred hcCHHHHhccEEEEcCCCcccccCHHHHHhc
Confidence 34556778999999887775556 66554
No 67
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.27 E-value=4.6e-14 Score=124.18 Aligned_cols=115 Identities=13% Similarity=0.137 Sum_probs=79.5
Q ss_pred CCCCccccChhHHHH--HHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH
Q psy1371 117 RPLNSVVLDSGVADR--ILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD 194 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~--~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~ 194 (244)
+.++++.+.|+. .. +++++ ++.++.++-++|+||||||||||+|+|+|+..|+.|.|.+++...+.
T Consensus 4 l~i~~l~~~y~~-~~~~vl~~v-----------sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~ 71 (353)
T 1oxx_K 4 IIVKNVSKVFKK-GKVVALDNV-----------NINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVAS 71 (353)
T ss_dssp EEEEEEEEEEGG-GTEEEEEEE-----------EEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEE
T ss_pred EEEEeEEEEECC-EeeeeEece-----------EEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcc
Confidence 346677777754 23 55666 77788888899999999999999999999999999999998854321
Q ss_pred ------HHHHHHhhhcCCCCceehh-hH-hhhhcc---cCcCcccHHHHHHHHHHhhhcC
Q psy1371 195 ------DRLNHLLSVAPQNSIILLE-DI-DAAFVT---REESSQGLEDIDAAFVTREESS 243 (244)
Q Consensus 195 ------~~~~~~~~~~~q~~~lf~d-ei-d~~~~~---r~~~~~~~~~~~~~~l~~~~~~ 243 (244)
...++.+++++|+..+|.. ++ |++... ++......++....+++++++.
T Consensus 72 ~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~ 131 (353)
T 1oxx_K 72 NGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIH 131 (353)
T ss_dssp TTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCG
T ss_pred cccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc
Confidence 1235668999998777632 33 444332 2222233344556677777653
No 68
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.26 E-value=6.4e-14 Score=124.05 Aligned_cols=113 Identities=16% Similarity=0.189 Sum_probs=76.7
Q ss_pred CCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH---
Q psy1371 118 PLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD--- 194 (244)
Q Consensus 118 ~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~--- 194 (244)
.++++.+.|+. ..+++++ ++.++.++-++|+||||||||||+|+|+|+..|+.|.|.+++...+.
T Consensus 5 ~~~~l~~~y~~-~~vl~~v-----------sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~ 72 (372)
T 1g29_1 5 RLVDVWKVFGE-VTAVREM-----------SLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEK 72 (372)
T ss_dssp EEEEEEEEETT-EEEEEEE-----------EEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGG
T ss_pred EEEeEEEEECC-EEEEeee-----------EEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccc
Confidence 45666666643 2355666 77777788899999999999999999999999999999999854321
Q ss_pred ----HHHHHHhhhcCCCCcee-----hhhHhhhhcccCcCcccHHHHHHHHHHhhhc
Q psy1371 195 ----DRLNHLLSVAPQNSIIL-----LEDIDAAFVTREESSQGLEDIDAAFVTREES 242 (244)
Q Consensus 195 ----~~~~~~~~~~~q~~~lf-----~deid~~~~~r~~~~~~~~~~~~~~l~~~~~ 242 (244)
...++.+++++|+..+| .|++......++......++....++.++++
T Consensus 73 ~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L 129 (372)
T 1g29_1 73 GIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGL 129 (372)
T ss_dssp TEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTC
T ss_pred cccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 11245689999987776 3444332222222333334455667777765
No 69
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.23 E-value=4.6e-13 Score=111.85 Aligned_cols=109 Identities=15% Similarity=0.144 Sum_probs=72.5
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH-HHH
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD-DRL 197 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~-~~~ 197 (244)
++++++.|+. +++++ ++.++. +-++|+||||||||||+|+|+|++.|+.|.+.+++.+... ...
T Consensus 4 ~~~l~~~y~~---~l~~i-----------sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 68 (240)
T 2onk_A 4 KVRAEKRLGN---FRLNV-----------DFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE 68 (240)
T ss_dssp EEEEEEEETT---EEEEE-----------EEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT
T ss_pred EEEEEEEeCC---EEeee-----------EEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchh
Confidence 4566666642 25566 777888 8899999999999999999999999999999999854421 123
Q ss_pred HHHhhhcCCCCceehh-hH-hhhhcccCc-CcccHHHHHHHHHHhhhc
Q psy1371 198 NHLLSVAPQNSIILLE-DI-DAAFVTREE-SSQGLEDIDAAFVTREES 242 (244)
Q Consensus 198 ~~~~~~~~q~~~lf~d-ei-d~~~~~r~~-~~~~~~~~~~~~l~~~~~ 242 (244)
++.+++++|++.++.+ ++ |++...... .....++....+++++++
T Consensus 69 ~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l 116 (240)
T 2onk_A 69 RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGI 116 (240)
T ss_dssp TSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTC
T ss_pred hCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCC
Confidence 4568999998766633 33 444332111 111113344556777665
No 70
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.21 E-value=5.3e-13 Score=110.64 Aligned_cols=83 Identities=24% Similarity=0.245 Sum_probs=64.7
Q ss_pred CCCCccccChhH-HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHH
Q psy1371 117 RPLNSVVLDSGV-ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDD 195 (244)
Q Consensus 117 ~~~~~v~~~~~~-~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~ 195 (244)
+.++++.+.|+. ...+++++ ++.++.++-++|+||||||||||+++|+|+++|+.|.+.+++
T Consensus 7 l~~~~l~~~y~~~~~~il~~v-----------sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g------ 69 (229)
T 2pze_A 7 VVMENVTAFWEEGGTPVLKDI-----------NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------ 69 (229)
T ss_dssp EEEEEEEECSSTTSCCSEEEE-----------EEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS------
T ss_pred EEEEEEEEEeCCCCceeeeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC------
Confidence 456777777742 23456666 778888888999999999999999999999999999999987
Q ss_pred HHHHHhhhcCCCCceehhhH-hhhhc
Q psy1371 196 RLNHLLSVAPQNSIILLEDI-DAAFV 220 (244)
Q Consensus 196 ~~~~~~~~~~q~~~lf~dei-d~~~~ 220 (244)
.+++++|++.+|...+ |++..
T Consensus 70 ----~i~~v~q~~~~~~~tv~enl~~ 91 (229)
T 2pze_A 70 ----RISFCSQFSWIMPGTIKENIIF 91 (229)
T ss_dssp ----CEEEECSSCCCCSBCHHHHHHT
T ss_pred ----EEEEEecCCcccCCCHHHHhhc
Confidence 2778888776664455 55543
No 71
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.21 E-value=3.4e-13 Score=112.41 Aligned_cols=83 Identities=20% Similarity=0.283 Sum_probs=63.2
Q ss_pred CCCCccccChhH-HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHH
Q psy1371 117 RPLNSVVLDSGV-ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDD 195 (244)
Q Consensus 117 ~~~~~v~~~~~~-~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~ 195 (244)
+.++++.+.|+. ...+++++ ++.+++++.++|+||||||||||+++|+|++.|+.|.+.+++
T Consensus 4 l~~~~l~~~y~~~~~~vl~~v-----------sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g------ 66 (237)
T 2cbz_A 4 ITVRNATFTWARSDPPTLNGI-----------TFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG------ 66 (237)
T ss_dssp EEEEEEEEESCTTSCCSEEEE-----------EEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS------
T ss_pred EEEEEEEEEeCCCCCceeeee-----------EEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC------
Confidence 345677776642 12456666 788888888999999999999999999999999999999987
Q ss_pred HHHHHhhhcCCCCceehhhH-hhhhc
Q psy1371 196 RLNHLLSVAPQNSIILLEDI-DAAFV 220 (244)
Q Consensus 196 ~~~~~~~~~~q~~~lf~dei-d~~~~ 220 (244)
.+++++|++.++..++ |++..
T Consensus 67 ----~i~~v~Q~~~~~~~tv~enl~~ 88 (237)
T 2cbz_A 67 ----SVAYVPQQAWIQNDSLRENILF 88 (237)
T ss_dssp ----CEEEECSSCCCCSEEHHHHHHT
T ss_pred ----EEEEEcCCCcCCCcCHHHHhhC
Confidence 2788888766553344 44443
No 72
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.15 E-value=3.7e-12 Score=106.91 Aligned_cols=82 Identities=22% Similarity=0.263 Sum_probs=61.7
Q ss_pred CCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcc--cCCCeEEEEeCCCCC---
Q psy1371 118 PLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGE--LEFGICVLNLSERGL--- 192 (244)
Q Consensus 118 ~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~--~~~~~g~i~~~~~~~--- 192 (244)
+++++++.|+. ..+++++ ++.++.++-++|+||||||||||+++|+|+ +.|+.|.+.+++.+.
T Consensus 5 ~~~~l~~~y~~-~~vl~~v-----------sl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~ 72 (250)
T 2d2e_A 5 EIRDLWASIDG-ETILKGV-----------NLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILEL 72 (250)
T ss_dssp EEEEEEEEETT-EEEEEEE-----------EEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTS
T ss_pred EEEeEEEEECC-EEEEece-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCC
Confidence 45677777753 2356666 777888888999999999999999999998 788999999998543
Q ss_pred CHHHH-HHHhhhcCCCCcee
Q psy1371 193 TDDRL-NHLLSVAPQNSIIL 211 (244)
Q Consensus 193 ~~~~~-~~~~~~~~q~~~lf 211 (244)
+.... +..+++++|++.+|
T Consensus 73 ~~~~~~~~~i~~v~q~~~~~ 92 (250)
T 2d2e_A 73 SPDERARKGLFLAFQYPVEV 92 (250)
T ss_dssp CHHHHHHTTBCCCCCCCC-C
T ss_pred CHHHHHhCcEEEeccCCccc
Confidence 23333 33467889987665
No 73
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.15 E-value=7.4e-13 Score=111.40 Aligned_cols=74 Identities=14% Similarity=0.160 Sum_probs=57.7
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHH
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDR 196 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~ 196 (244)
+.++++++.|+....+++++ ++.++.++-++|+||||||||||+++|+|++.|+.|.+..
T Consensus 5 l~i~~l~~~y~~~~~vl~~i-----------sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~--------- 64 (253)
T 2nq2_C 5 LSVENLGFYYQAENFLFQQL-----------NFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV--------- 64 (253)
T ss_dssp EEEEEEEEEETTTTEEEEEE-----------EEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE---------
T ss_pred EEEeeEEEEeCCCCeEEEEE-----------EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE---------
Confidence 34667777765113456666 7778888889999999999999999999999999999982
Q ss_pred HHHHhhhcCCCCcee
Q psy1371 197 LNHLLSVAPQNSIIL 211 (244)
Q Consensus 197 ~~~~~~~~~q~~~lf 211 (244)
++.+++++|++.++
T Consensus 65 -~~~i~~v~q~~~~~ 78 (253)
T 2nq2_C 65 -YQSIGFVPQFFSSP 78 (253)
T ss_dssp -CSCEEEECSCCCCS
T ss_pred -eccEEEEcCCCccC
Confidence 34578899876555
No 74
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.12 E-value=4e-11 Score=108.87 Aligned_cols=101 Identities=21% Similarity=0.255 Sum_probs=69.4
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC--CCeEEEEeCC----
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE--FGICVLNLSE---- 189 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~--~~~g~i~~~~---- 189 (244)
...|+++......++.+..-+ ..+ ..+..++++++|+||||||||++++++++.++ .+...+....
T Consensus 33 ~~~~~~iiG~~~~~~~l~~~~-~~~-------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~ 104 (456)
T 2c9o_A 33 KQAASGLVGQENAREACGVIV-ELI-------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYST 104 (456)
T ss_dssp CSEETTEESCHHHHHHHHHHH-HHH-------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCS
T ss_pred hhchhhccCHHHHHHHHHHHH-HHH-------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHH
Confidence 345788888776665443322 221 34556778999999999999999999999998 5555555433
Q ss_pred -CCCCHHHHHHHhhhc-----CCCCceehhhHhhhhcccCcC
Q psy1371 190 -RGLTDDRLNHLLSVA-----PQNSIILLEDIDAAFVTREES 225 (244)
Q Consensus 190 -~~~~~~~~~~~~~~~-----~q~~~lf~deid~~~~~r~~~ 225 (244)
.+.++. +++.|..+ .+++++|+||+|.++..|...
T Consensus 105 ~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~ 145 (456)
T 2c9o_A 105 EIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETEN 145 (456)
T ss_dssp SSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC----
T ss_pred hhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCC
Confidence 222333 77777776 357999999999999887543
No 75
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.09 E-value=8.5e-12 Score=105.71 Aligned_cols=84 Identities=18% Similarity=0.235 Sum_probs=65.1
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcc--cCCCeEEEEeCCCCC-
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGE--LEFGICVLNLSERGL- 192 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~--~~~~~g~i~~~~~~~- 192 (244)
.+.++++.+.|+. ..+++++ ++.++.++-++|+||||||||||+|+|+|+ +.++.|.+.+++.+.
T Consensus 20 ~l~~~~l~~~y~~-~~vl~~v-----------sl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~ 87 (267)
T 2zu0_C 20 MLSIKDLHVSVED-KAILRGL-----------SLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 87 (267)
T ss_dssp CEEEEEEEEEETT-EEEEEEE-----------EEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGG
T ss_pred eEEEEeEEEEECC-EEEEEee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 3678899888853 3466777 788888888999999999999999999998 467899999998543
Q ss_pred --CHHHH-HHHhhhcCCCCcee
Q psy1371 193 --TDDRL-NHLLSVAPQNSIIL 211 (244)
Q Consensus 193 --~~~~~-~~~~~~~~q~~~lf 211 (244)
+.... ++.+++++|++.++
T Consensus 88 ~~~~~~~~~~~i~~v~Q~~~l~ 109 (267)
T 2zu0_C 88 ALSPEDRAGEGIFMAFQYPVEI 109 (267)
T ss_dssp GSCHHHHHHHTEEEECSSCCCC
T ss_pred cCCHHHHhhCCEEEEccCcccc
Confidence 23333 33478899987655
No 76
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.08 E-value=1.8e-11 Score=105.39 Aligned_cols=68 Identities=25% Similarity=0.230 Sum_probs=55.7
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHH
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDR 196 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~ 196 (244)
+.+++|.+.|+ ..+++++ ++.+++++.++|+||||||||||+++|+|++ .|.|.
T Consensus 102 i~~~~vs~~y~--~~vL~~v-----------sl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~---------- 155 (305)
T 2v9p_A 102 FNYQNIELITF--INALKLW-----------LKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL---------- 155 (305)
T ss_dssp HHHTTCCHHHH--HHHHHHH-----------HHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE----------
T ss_pred EEEEEEEEEcC--hhhhccc-----------eEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE----------
Confidence 67889999887 4688999 8899999999999999999999999999999 46663
Q ss_pred HHHHhhhcCCCCceehhhH
Q psy1371 197 LNHLLSVAPQNSIILLEDI 215 (244)
Q Consensus 197 ~~~~~~~~~q~~~lf~dei 215 (244)
.+++|.+.+|.+.+
T Consensus 156 -----~~v~q~~~lf~~ti 169 (305)
T 2v9p_A 156 -----SFANHKSHFWLASL 169 (305)
T ss_dssp -----CGGGTTSGGGGGGG
T ss_pred -----EEecCccccccccH
Confidence 34566666666555
No 77
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.05 E-value=8.8e-13 Score=111.57 Aligned_cols=60 Identities=18% Similarity=0.254 Sum_probs=49.0
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH-HHHHHHhh-hcCCCCce
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD-DRLNHLLS-VAPQNSII 210 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~-~~~~~~~~-~~~q~~~l 210 (244)
++.++ ++.++|+||||||||||+|+|+|++ |+.|.+.+++.+... .. ++.++ +++|++.+
T Consensus 25 sl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~-~~~i~~~v~Q~~~l 86 (263)
T 2pjz_A 25 NLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRN-YIRYSTNLPEAYEI 86 (263)
T ss_dssp EEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSC-CTTEEECCGGGSCT
T ss_pred eEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHH-hhheEEEeCCCCcc
Confidence 77788 8889999999999999999999999 999999998844321 12 45688 89987654
No 78
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.02 E-value=8.1e-10 Score=94.54 Aligned_cols=118 Identities=16% Similarity=0.197 Sum_probs=69.4
Q ss_pred ccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCc---ceEEEcCCCCChhHHHHHHhcccCC-------CeEEEEeCC-
Q psy1371 121 SVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRR---GYLLYGPPGCGKSSFITALAGELEF-------GICVLNLSE- 189 (244)
Q Consensus 121 ~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~---gi~l~Gp~GsGKTtl~~~la~~~~~-------~~g~i~~~~- 189 (244)
++......++.+.+.+.... .++.....++..++ .++|+||||||||+++++++..+.. +...+....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 34555555555544444332 34445455655443 4999999999999999999987732 333443322
Q ss_pred ----CCCCHHHHHHHhhhcCCCCceehhhHhhhhcccCcCcccHHHHHHHHHHhhh
Q psy1371 190 ----RGLTDDRLNHLLSVAPQNSIILLEDIDAAFVTREESSQGLEDIDAAFVTREE 241 (244)
Q Consensus 190 ----~~~~~~~~~~~~~~~~q~~~lf~deid~~~~~r~~~~~~~~~~~~~~l~~~~ 241 (244)
.+.....++..+..+ +++++|+||+|.+...+... .......+.+++.++
T Consensus 111 ~~~~~g~~~~~~~~~~~~~-~~~vl~iDEid~l~~~~~~~-~~~~~~~~~Ll~~l~ 164 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA-MGGVLFIDEAYYLYRPDNER-DYGQEAIEILLQVME 164 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH-TTSEEEEETGGGSCCCC----CCTHHHHHHHHHHHH
T ss_pred hhhcccccHHHHHHHHHhc-CCCEEEEEChhhhccCCCcc-cccHHHHHHHHHHHh
Confidence 122334556666555 46899999999997654321 222344455555443
No 79
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.02 E-value=1.1e-11 Score=106.14 Aligned_cols=80 Identities=26% Similarity=0.317 Sum_probs=55.5
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHH
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDD 195 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~ 195 (244)
.+.++++.+.+ ..+++++ ++.++.|+-++|+||||||||||+++|+|++.|+.|.+.+++
T Consensus 40 ~l~~~~l~~~~---~~vl~~i-----------sl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g------ 99 (290)
T 2bbs_A 40 SLSFSNFSLLG---TPVLKDI-----------NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------ 99 (290)
T ss_dssp ----------C---CCSEEEE-----------EEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS------
T ss_pred eEEEEEEEEcC---ceEEEee-----------EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC------
Confidence 35667776642 2345555 677888888999999999999999999999999999999987
Q ss_pred HHHHHhhhcCCCCceehhhH-hhhh
Q psy1371 196 RLNHLLSVAPQNSIILLEDI-DAAF 219 (244)
Q Consensus 196 ~~~~~~~~~~q~~~lf~dei-d~~~ 219 (244)
.+++++|++.+|...+ |++.
T Consensus 100 ----~i~~v~Q~~~l~~~tv~enl~ 120 (290)
T 2bbs_A 100 ----RISFCSQNSWIMPGTIKENII 120 (290)
T ss_dssp ----CEEEECSSCCCCSSBHHHHHH
T ss_pred ----EEEEEeCCCccCcccHHHHhh
Confidence 2778888776664455 5554
No 80
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.99 E-value=3.5e-09 Score=91.81 Aligned_cols=100 Identities=14% Similarity=0.190 Sum_probs=70.0
Q ss_pred CCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCC
Q psy1371 111 GHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSER 190 (244)
Q Consensus 111 ~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~ 190 (244)
.+..++..|+++.......+.+.+.+...... -+....++|+||||||||+++++++...+.+...+.....
T Consensus 20 ~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~--------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~ 91 (338)
T 3pfi_A 20 ETSLRPSNFDGYIGQESIKKNLNVFIAAAKKR--------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMI 91 (338)
T ss_dssp ---CCCCSGGGCCSCHHHHHHHHHHHHHHHHT--------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGC
T ss_pred hhccCCCCHHHhCChHHHHHHHHHHHHHHHhc--------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhc
Confidence 34566778999988877666665555333211 1234568999999999999999999998887766665443
Q ss_pred CCCHHHHHHHhhhcCCCCceehhhHhhhh
Q psy1371 191 GLTDDRLNHLLSVAPQNSIILLEDIDAAF 219 (244)
Q Consensus 191 ~~~~~~~~~~~~~~~q~~~lf~deid~~~ 219 (244)
. ....+...+.......++|+||+|.+.
T Consensus 92 ~-~~~~~~~~~~~~~~~~vl~lDEi~~l~ 119 (338)
T 3pfi_A 92 E-KSGDLAAILTNLSEGDILFIDEIHRLS 119 (338)
T ss_dssp C-SHHHHHHHHHTCCTTCEEEEETGGGCC
T ss_pred c-chhHHHHHHHhccCCCEEEEechhhcC
Confidence 2 344566666666678999999999874
No 81
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.98 E-value=5.4e-10 Score=98.29 Aligned_cols=89 Identities=22% Similarity=0.332 Sum_probs=62.5
Q ss_pred CCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC-------HHHHHHHhhhcC------CCCceehhhHhhhh
Q psy1371 153 YRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT-------DDRLNHLLSVAP------QNSIILLEDIDAAF 219 (244)
Q Consensus 153 ~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~-------~~~~~~~~~~~~------q~~~lf~deid~~~ 219 (244)
.+.+++|+||||||||+++++|+..++.+...+........ ...++..+..++ +++++|+||+|.+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~ 129 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKIS 129 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhc
Confidence 45679999999999999999999999888777765442211 123444554442 45899999999998
Q ss_pred cccCcCcc----cHHHHHHHHHHhhh
Q psy1371 220 VTREESSQ----GLEDIDAAFVTREE 241 (244)
Q Consensus 220 ~~r~~~~~----~~~~~~~~~l~~~~ 241 (244)
..+..... ..+.+.+.+++.++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~Ll~~le 155 (363)
T 3hws_A 130 RKSDNPSITRDVSGEGVQQALLKLIE 155 (363)
T ss_dssp CCSSCC---CHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchHHHHHHHHHHhc
Confidence 77644321 12347888888877
No 82
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.96 E-value=5.4e-09 Score=88.08 Aligned_cols=94 Identities=18% Similarity=0.234 Sum_probs=65.2
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC--CCCCH----HHHHHHhhhcC--CCCceehhhHhhhh
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE--RGLTD----DRLNHLLSVAP--QNSIILLEDIDAAF 219 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~--~~~~~----~~~~~~~~~~~--q~~~lf~deid~~~ 219 (244)
..+.+.+.+++|+||||||||+++++++...+.+...+...+ .+... ..+++.+..+. +++++|+||+|.++
T Consensus 58 ~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~ 137 (272)
T 1d2n_A 58 NSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLL 137 (272)
T ss_dssp HCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHT
T ss_pred ccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhh
Confidence 334566678999999999999999999999887766665433 22222 34556665543 46899999999997
Q ss_pred cccCcCcccHHHHHHHHHHhhh
Q psy1371 220 VTREESSQGLEDIDAAFVTREE 241 (244)
Q Consensus 220 ~~r~~~~~~~~~~~~~~l~~~~ 241 (244)
..+.........+.+.+...++
T Consensus 138 ~~~~~~~~~~~~~l~~L~~~~~ 159 (272)
T 1d2n_A 138 DYVPIGPRFSNLVLQALLVLLK 159 (272)
T ss_dssp TCBTTTTBCCHHHHHHHHHHTT
T ss_pred ccCCCChhHHHHHHHHHHHHhc
Confidence 6655444444566666666554
No 83
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.83 E-value=5.8e-09 Score=88.86 Aligned_cols=120 Identities=18% Similarity=0.218 Sum_probs=70.2
Q ss_pred cccChhHHHHHHHHHHHHhcChhhhhhCC-CCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCC---CC----C
Q psy1371 122 VVLDSGVADRILTDIKQFVADPAWYLDRG-IPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSER---GL----T 193 (244)
Q Consensus 122 v~~~~~~~~~~l~~i~~~~~~~~~~~~~~-~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~---~~----~ 193 (244)
+......++.+...+...+........+. -..+.+++|+||||||||+++++++..++.+...++.... +. .
T Consensus 17 i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~ 96 (310)
T 1ofh_A 17 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEV 96 (310)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGST
T ss_pred cCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccH
Confidence 44455555555555544322221111110 1234679999999999999999999999887777765431 11 1
Q ss_pred HHHHHHHhhhcC-------CCCceehhhHhhhhcccCcCcc--cHHHHHHHHHHhhh
Q psy1371 194 DDRLNHLLSVAP-------QNSIILLEDIDAAFVTREESSQ--GLEDIDAAFVTREE 241 (244)
Q Consensus 194 ~~~~~~~~~~~~-------q~~~lf~deid~~~~~r~~~~~--~~~~~~~~~l~~~~ 241 (244)
...+++.+...+ +++++|+||+|.+...+..... ..+.+.+.++..++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le 153 (310)
T 1ofh_A 97 DSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVE 153 (310)
T ss_dssp THHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhc
Confidence 234555554332 3689999999999766532211 12234556665554
No 84
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.81 E-value=5.5e-09 Score=94.17 Aligned_cols=117 Identities=14% Similarity=0.145 Sum_probs=66.8
Q ss_pred ccccChhHHHHHHHHHHHHhcChhhhhhCCCC-CCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC------CCC-
Q psy1371 121 SVVLDSGVADRILTDIKQFVADPAWYLDRGIP-YRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE------RGL- 192 (244)
Q Consensus 121 ~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~-~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~------~~~- 192 (244)
+|......++.+...+...+++...+..+..+ ++++++|+|||||||||+++++|+.++.+...++... .+.
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d 95 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeecc
Confidence 45556666666666665555555555444433 4578999999999999999999999998888777532 222
Q ss_pred CHHHHHHHhhhcCCCCceehhhHhhhhcccCcCcccHHHHHHHHHHhhh
Q psy1371 193 TDDRLNHLLSVAPQNSIILLEDIDAAFVTREESSQGLEDIDAAFVTREE 241 (244)
Q Consensus 193 ~~~~~~~~~~~~~q~~~lf~deid~~~~~r~~~~~~~~~~~~~~l~~~~ 241 (244)
.+..+++.+..+. ...++||+|.+.... .....+++.+.++..+|
T Consensus 96 ~e~~lr~lf~~a~--~~~~~De~d~~~~~~--~~~~e~rvl~~LL~~~d 140 (444)
T 1g41_A 96 VDSIIRDLTDSAM--KLVRQQEIAKNRARA--EDVAEERILDALLPPAK 140 (444)
T ss_dssp THHHHHHHHHHHH--HHHHHHHHHSCC----------------------
T ss_pred HHHHHHHHHHHHH--hcchhhhhhhhhccc--hhhHHHHHHHHHHHHhh
Confidence 4566777766554 234578887664322 12233456666654443
No 85
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.81 E-value=1.9e-08 Score=88.77 Aligned_cols=89 Identities=26% Similarity=0.391 Sum_probs=54.5
Q ss_pred CCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCC------CC-HHHHHHHhhhcC------CCCceehhhHhhhh
Q psy1371 153 YRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERG------LT-DDRLNHLLSVAP------QNSIILLEDIDAAF 219 (244)
Q Consensus 153 ~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~------~~-~~~~~~~~~~~~------q~~~lf~deid~~~ 219 (244)
.+..++|+||||||||+++++++..++.+...++..... .. ...+.+.+.... ..+++|+||+|.+.
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~ 150 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKIS 150 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC-
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHh
Confidence 345699999999999999999999998777776654321 11 223444444332 46899999999988
Q ss_pred cccCcCccc----HHHHHHHHHHhhh
Q psy1371 220 VTREESSQG----LEDIDAAFVTREE 241 (244)
Q Consensus 220 ~~r~~~~~~----~~~~~~~~l~~~~ 241 (244)
..+...... .+.+.++|++.++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~Ll~~le 176 (376)
T 1um8_A 151 RLSENRSITRDVSGEGVQQALLKIVE 176 (376)
T ss_dssp -------------CHHHHHHHHHHHH
T ss_pred hhcCCCceecccchHHHHHHHHHHhh
Confidence 764332111 1235666766665
No 86
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.77 E-value=3.4e-09 Score=82.69 Aligned_cols=59 Identities=14% Similarity=0.009 Sum_probs=47.4
Q ss_pred ccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC
Q psy1371 121 SVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL 192 (244)
Q Consensus 121 ~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~ 192 (244)
++...++. ..+++++ ++.++.++-++|+||||||||||+|+|++.+ ++.|.+.+++...
T Consensus 12 ~~~~~~g~-~~~l~~v-----------sl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i 70 (158)
T 1htw_A 12 FSMLRFGK-KFAEILL-----------KLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTL 70 (158)
T ss_dssp HHHHHHHH-HHHHHHH-----------HHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTC
T ss_pred HHHHHHHH-HHHHhcc-----------ccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEee
Confidence 34444543 4567778 7788888889999999999999999999999 8889988877554
No 87
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.77 E-value=8.6e-09 Score=94.91 Aligned_cols=110 Identities=21% Similarity=0.280 Sum_probs=67.9
Q ss_pred CCCCCCCCCCccccChhHHHHHHHHHHHHhcC-hhhhhhCCC---CCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEE
Q psy1371 111 GHPKRRRPLNSVVLDSGVADRILTDIKQFVAD-PAWYLDRGI---PYRRGYLLYGPPGCGKSSFITALAGELEFGICVLN 186 (244)
Q Consensus 111 ~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~-~~~~~~~~~---~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~ 186 (244)
.++++|.+|+++.......+.+.+.+..+... +..++..+. +..+.++|+|||||||||+++++++.++.+...++
T Consensus 30 ~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in 109 (516)
T 1sxj_A 30 TVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQN 109 (516)
T ss_dssp HHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred ccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 45577888999988876666555555432211 112222222 24577999999999999999999999876555544
Q ss_pred eCCCCCCHHHHHHHhh-------------hc-------CCCCceehhhHhhhhcc
Q psy1371 187 LSERGLTDDRLNHLLS-------------VA-------PQNSIILLEDIDAAFVT 221 (244)
Q Consensus 187 ~~~~~~~~~~~~~~~~-------------~~-------~q~~~lf~deid~~~~~ 221 (244)
..+.. ....+...+. .+ .++.++++||+|.+...
T Consensus 110 ~s~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~ 163 (516)
T 1sxj_A 110 ASDVR-SKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGG 163 (516)
T ss_dssp TTSCC-CHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTT
T ss_pred CCCcc-hHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchh
Confidence 33311 2222222222 11 24578999999998653
No 88
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.76 E-value=2.4e-08 Score=85.81 Aligned_cols=98 Identities=19% Similarity=0.313 Sum_probs=64.9
Q ss_pred CCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC
Q psy1371 113 PKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL 192 (244)
Q Consensus 113 ~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~ 192 (244)
..++..|+++.........+.+.+...... -..+..++|+||||||||+++++++..++.+...+......
T Consensus 5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~--------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~- 75 (324)
T 1hqc_A 5 ALRPKTLDEYIGQERLKQKLRVYLEAAKAR--------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIE- 75 (324)
T ss_dssp CCCCCSTTTCCSCHHHHHHHHHHHHHHHHH--------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCC-
T ss_pred ccCcccHHHhhCHHHHHHHHHHHHHHHHcc--------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccC-
Confidence 345667899888776555554444322110 12345689999999999999999999887665544433322
Q ss_pred CHHHHHHHhhh-cCCCCceehhhHhhhh
Q psy1371 193 TDDRLNHLLSV-APQNSIILLEDIDAAF 219 (244)
Q Consensus 193 ~~~~~~~~~~~-~~q~~~lf~deid~~~ 219 (244)
....+...+.. ..++.++|+||+|.+.
T Consensus 76 ~~~~l~~~l~~~~~~~~~l~lDEi~~l~ 103 (324)
T 1hqc_A 76 KPGDLAAILANSLEEGDILFIDEIHRLS 103 (324)
T ss_dssp SHHHHHHHHTTTCCTTCEEEETTTTSCC
T ss_pred ChHHHHHHHHHhccCCCEEEEECCcccc
Confidence 23455555554 4567899999998774
No 89
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.75 E-value=3.6e-09 Score=98.10 Aligned_cols=70 Identities=26% Similarity=0.305 Sum_probs=49.3
Q ss_pred CCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC-C-------------HHHHHHHhhhcC-CCCceehhhHhh
Q psy1371 153 YRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL-T-------------DDRLNHLLSVAP-QNSIILLEDIDA 217 (244)
Q Consensus 153 ~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~-~-------------~~~~~~~~~~~~-q~~~lf~deid~ 217 (244)
.++.++|+|||||||||++++|++.++++.+.+...+... + ...+...+..+. .++++|+||+|.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~ 186 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDK 186 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCSSSEEEEEEESSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccCCEEEEhhhhh
Confidence 4667999999999999999999999999999988776211 1 112333444443 356999999999
Q ss_pred hhccc
Q psy1371 218 AFVTR 222 (244)
Q Consensus 218 ~~~~r 222 (244)
+...+
T Consensus 187 l~~~~ 191 (543)
T 3m6a_A 187 MSSDF 191 (543)
T ss_dssp CC---
T ss_pred hhhhh
Confidence 87653
No 90
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.75 E-value=1.6e-08 Score=88.56 Aligned_cols=59 Identities=20% Similarity=0.272 Sum_probs=41.2
Q ss_pred CCCC-CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCC
Q psy1371 115 RRRP-LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFG 181 (244)
Q Consensus 115 ~~~~-~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~ 181 (244)
++.. |+++......++.+ ..+...+ .-+..++++++|+||||+|||+++++++..+...
T Consensus 38 ~p~~~~~~ivG~~~~~~~l-~~l~~~~-------~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~ 97 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAA-GVVLEMI-------REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD 97 (368)
T ss_dssp CBCSEETTEESCHHHHHHH-HHHHHHH-------HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSS
T ss_pred CcCcchhhccChHHHHHHH-HHHHHHH-------HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 3444 88988877654432 2332222 3344556789999999999999999999988753
No 91
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.75 E-value=9.8e-09 Score=92.95 Aligned_cols=94 Identities=14% Similarity=0.248 Sum_probs=63.2
Q ss_pred CCCCCCCCCccccChhHH---HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeC
Q psy1371 112 HPKRRRPLNSVVLDSGVA---DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLS 188 (244)
Q Consensus 112 ~~~~~~~~~~v~~~~~~~---~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~ 188 (244)
+..++.+++++....... ..+.+.+ ..+. ...++|+|||||||||++++|++.+..+...+...
T Consensus 18 ~r~rP~~l~~ivGq~~~~~~~~~L~~~i----~~~~---------~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~ 84 (447)
T 3pvs_A 18 ARMRPENLAQYIGQQHLLAAGKPLPRAI----EAGH---------LHSMILWGPPGTGKTTLAEVIARYANADVERISAV 84 (447)
T ss_dssp HHTCCCSTTTCCSCHHHHSTTSHHHHHH----HHTC---------CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETT
T ss_pred HHhCCCCHHHhCCcHHHHhchHHHHHHH----HcCC---------CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEec
Confidence 345677899998776544 2333333 2111 14589999999999999999999998877777654
Q ss_pred CCCCCHHHHHHHhhhcC------CCCceehhhHhhhhc
Q psy1371 189 ERGLTDDRLNHLLSVAP------QNSIILLEDIDAAFV 220 (244)
Q Consensus 189 ~~~~~~~~~~~~~~~~~------q~~~lf~deid~~~~ 220 (244)
.. ..+.++..+..+. +..++|+||+|.+..
T Consensus 85 ~~--~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~ 120 (447)
T 3pvs_A 85 TS--GVKEIREAIERARQNRNAGRRTILFVDEVHRFNK 120 (447)
T ss_dssp TC--CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--
T ss_pred cC--CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH
Confidence 43 3444555544432 568999999998754
No 92
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.71 E-value=3.8e-08 Score=85.62 Aligned_cols=98 Identities=18% Similarity=0.303 Sum_probs=60.1
Q ss_pred CCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC
Q psy1371 113 PKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL 192 (244)
Q Consensus 113 ~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~ 192 (244)
..++..+++..... .++++++..+..+..- + .+...++|+||||||||||++++++.++.+....... ...
T Consensus 18 ~lr~~~l~~~~g~~----~~~~~l~~~i~~~~~~---~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~-~~~ 88 (334)
T 1in4_A 18 FLRPKSLDEFIGQE----NVKKKLSLALEAAKMR---G-EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGP-VLV 88 (334)
T ss_dssp TTSCSSGGGCCSCH----HHHHHHHHHHHHHHHH---T-CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETT-TCC
T ss_pred HcCCccHHHccCcH----HHHHHHHHHHHHHHhc---C-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEech-Hhc
Confidence 34445566654332 3556666555433211 1 1235689999999999999999999987654333221 222
Q ss_pred CHHHHHHHhhhcCCCCceehhhHhhhh
Q psy1371 193 TDDRLNHLLSVAPQNSIILLEDIDAAF 219 (244)
Q Consensus 193 ~~~~~~~~~~~~~q~~~lf~deid~~~ 219 (244)
....++..+.......++|+||++.+.
T Consensus 89 ~~~~l~~~~~~~~~~~v~~iDE~~~l~ 115 (334)
T 1in4_A 89 KQGDMAAILTSLERGDVLFIDEIHRLN 115 (334)
T ss_dssp SHHHHHHHHHHCCTTCEEEEETGGGCC
T ss_pred CHHHHHHHHHHccCCCEEEEcchhhcC
Confidence 334455544444456789999998774
No 93
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.69 E-value=1.7e-08 Score=79.72 Aligned_cols=60 Identities=22% Similarity=0.279 Sum_probs=43.9
Q ss_pred CCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 115 RRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
++.+|++.....+..+.+++.+..++. ++.++.+++++|+||||||||||++++++.+.+
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 64 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVH------NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYE 64 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHH------SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHH
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHH------hccccCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455788876544444455565544433 666677888999999999999999999998853
No 94
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.68 E-value=8.1e-09 Score=90.97 Aligned_cols=61 Identities=20% Similarity=0.344 Sum_probs=48.9
Q ss_pred CCCccccC---hhH-HHHHH---------HHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEE
Q psy1371 118 PLNSVVLD---SGV-ADRIL---------TDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICV 184 (244)
Q Consensus 118 ~~~~v~~~---~~~-~~~~l---------~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~ 184 (244)
.|++|.|. |+. ...++ +++ ++.++.++.++|+||||||||||+++|+++++++.|.
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l-----------~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~ 205 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFL-----------RRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRL 205 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHH-----------HHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCE
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHH-----------HHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceE
Confidence 78888887 643 23444 666 5555666667999999999999999999999999999
Q ss_pred EEeCC
Q psy1371 185 LNLSE 189 (244)
Q Consensus 185 i~~~~ 189 (244)
+.+++
T Consensus 206 I~ie~ 210 (361)
T 2gza_A 206 ITIED 210 (361)
T ss_dssp EEEES
T ss_pred EEECC
Confidence 98876
No 95
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.68 E-value=7.4e-09 Score=90.15 Aligned_cols=56 Identities=16% Similarity=0.374 Sum_probs=46.4
Q ss_pred CCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC
Q psy1371 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE 189 (244)
Q Consensus 119 ~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~ 189 (244)
++++.| | ..+++++ ++.++.++.++++||||||||||+++|+++++++.|.+.+++
T Consensus 151 ~~~v~f-y---~~~l~~l-----------~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~ 206 (330)
T 2pt7_A 151 YNLLDN-K---EQAISAI-----------KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIED 206 (330)
T ss_dssp TTTSTT-H---HHHHHHH-----------HHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEES
T ss_pred cCchhh-H---HHHHhhh-----------hhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECC
Confidence 777777 5 4577888 444555566799999999999999999999999999998876
No 96
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.67 E-value=1.2e-08 Score=88.06 Aligned_cols=95 Identities=19% Similarity=0.249 Sum_probs=63.6
Q ss_pred CCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCC
Q psy1371 111 GHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSER 190 (244)
Q Consensus 111 ~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~ 190 (244)
.+.++|.+|+++..+....+.+.+.+ .. + ..+..++++||||+|||+++++++..++.+...++....
T Consensus 17 ~~k~rP~~~~~ivg~~~~~~~l~~~l----~~-------~-~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~ 84 (324)
T 3u61_B 17 EQKYRPSTIDECILPAFDKETFKSIT----SK-------G-KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDC 84 (324)
T ss_dssp HHHSCCCSTTTSCCCHHHHHHHHHHH----HT-------T-CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTC
T ss_pred HHhhCCCCHHHHhCcHHHHHHHHHHH----Hc-------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccccc
Confidence 45567788999998876555444444 21 1 223447888999999999999999998776666654443
Q ss_pred CCCHHHHHHHh----hhcC---CCCceehhhHhhhh
Q psy1371 191 GLTDDRLNHLL----SVAP---QNSIILLEDIDAAF 219 (244)
Q Consensus 191 ~~~~~~~~~~~----~~~~---q~~~lf~deid~~~ 219 (244)
....+++.+ ...+ +..++++||+|.+.
T Consensus 85 --~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~ 118 (324)
T 3u61_B 85 --KIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSG 118 (324)
T ss_dssp --CHHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGG
T ss_pred --CHHHHHHHHHHHHhhcccCCCCeEEEEECCcccC
Confidence 344444332 2222 45789999999885
No 97
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.65 E-value=2.9e-08 Score=77.70 Aligned_cols=93 Identities=19% Similarity=0.349 Sum_probs=55.2
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC----------CCeEEE
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE----------FGICVL 185 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~----------~~~g~i 185 (244)
+..++++.......+.+.+.+ .. ..++.++|+||||+|||++++.++..+. .+...+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l----~~---------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~ 84 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQIL----SR---------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSL 84 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHH----TS---------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEE
T ss_pred ccccchhhcchHHHHHHHHHH----hC---------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEE
Confidence 456777776655444444333 11 3345689999999999999999998762 222333
Q ss_pred EeCC----CCC---CHHHHHHHhhhc---CCCCceehhhHhhhhcc
Q psy1371 186 NLSE----RGL---TDDRLNHLLSVA---PQNSIILLEDIDAAFVT 221 (244)
Q Consensus 186 ~~~~----~~~---~~~~~~~~~~~~---~q~~~lf~deid~~~~~ 221 (244)
.... ... ....+++.+..+ ..+.++++||+|.+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~ 130 (187)
T 2p65_A 85 DLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGA 130 (187)
T ss_dssp CHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSS
T ss_pred eHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccc
Confidence 2221 111 112233333332 34579999999998744
No 98
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.65 E-value=3.7e-08 Score=87.16 Aligned_cols=68 Identities=29% Similarity=0.311 Sum_probs=52.1
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHhhhcCCCCceehhhHhhhhc
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRLNHLLSVAPQNSIILLEDIDAAFV 220 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~q~~~lf~deid~~~~ 220 (244)
+++++.++.++|+|||||||||++++|++.+.. .+.... ......+..++.++|..++++|+++.+..
T Consensus 163 ~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g---~~~~~~--~~~~~~~~~lg~~~q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 163 VYNIPKKRYWLFKGPIDSGKTTLAAALLELCGG---KALNVN--LPLDRLNFELGVAIDQFLVVFEDVKGTGG 230 (377)
T ss_dssp HHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCC---EEECCS--SCTTTHHHHHGGGTTCSCEEETTCCCSTT
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHhhcCC---cEEEEe--ccchhHHHHHHHhcchhHHHHHHHHHHHH
Confidence 678999999999999999999999999998753 332211 11123344588899999999999998775
No 99
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.65 E-value=4.1e-08 Score=76.91 Aligned_cols=93 Identities=18% Similarity=0.349 Sum_probs=55.0
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC----------CCeEEE
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE----------FGICVL 185 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~----------~~~g~i 185 (244)
+..++++.......+.+.+.+ .. ..++.++|+||||+|||++++.++..+. .+...+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l----~~---------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVL----QR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHH----TS---------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred hccccccccchHHHHHHHHHH----hc---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 345777766655444444433 11 3346689999999999999999998762 222333
Q ss_pred EeCC----CCCC---HHHHHHHhhhc---CCCCceehhhHhhhhcc
Q psy1371 186 NLSE----RGLT---DDRLNHLLSVA---PQNSIILLEDIDAAFVT 221 (244)
Q Consensus 186 ~~~~----~~~~---~~~~~~~~~~~---~q~~~lf~deid~~~~~ 221 (244)
.... .... ...+++.+..+ ..+.++++||+|.+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~ 130 (195)
T 1jbk_A 85 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGA 130 (195)
T ss_dssp CHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-
T ss_pred eHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhcc
Confidence 3211 1111 12334444332 34568999999998644
No 100
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.64 E-value=3.7e-08 Score=75.27 Aligned_cols=64 Identities=19% Similarity=0.196 Sum_probs=42.1
Q ss_pred CcceEEEcCCCCChhHHHHHHhccc---CCCeEEEEeCCCCCCHHHHHHHhhhcCCCCceehhhHhhhhc
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAGEL---EFGICVLNLSERGLTDDRLNHLLSVAPQNSIILLEDIDAAFV 220 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~q~~~lf~deid~~~~ 220 (244)
+..++|+||||||||+++++++... +.+.. +........ ......+..+ +..++|+||+|.+..
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~-~~~~~~~~~a-~~g~l~ldei~~l~~ 90 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA-PQLNDFIALA-QGGTLVLSHPEHLTR 90 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-SCHHHHHHHH-TTSCEEEECGGGSCH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-hhhhcHHHHc-CCcEEEEcChHHCCH
Confidence 3458999999999999999999876 33334 554432211 1223333333 457899999998753
No 101
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.62 E-value=4.4e-08 Score=78.62 Aligned_cols=96 Identities=29% Similarity=0.341 Sum_probs=55.8
Q ss_pred cCCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC-----CCeEE
Q psy1371 110 FGHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE-----FGICV 184 (244)
Q Consensus 110 ~~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~-----~~~g~ 184 (244)
|.+..++..++++.......+.+.+.+ ..+ ....++|+||+|+|||++++.++..+. .....
T Consensus 7 ~~~~~~p~~~~~~~g~~~~~~~l~~~l----~~~---------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~ 73 (226)
T 2chg_A 7 WVEKYRPRTLDEVVGQDEVIQRLKGYV----ERK---------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIE 73 (226)
T ss_dssp HHHHTSCSSGGGCCSCHHHHHHHHHHH----HTT---------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEE
T ss_pred HHHhcCCCCHHHHcCcHHHHHHHHHHH----hCC---------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEE
Confidence 334455677888876655444443333 221 122489999999999999999998652 22333
Q ss_pred EEeCCCCCCHHHHHHHh----hhc----CCCCceehhhHhhhh
Q psy1371 185 LNLSERGLTDDRLNHLL----SVA----PQNSIILLEDIDAAF 219 (244)
Q Consensus 185 i~~~~~~~~~~~~~~~~----~~~----~q~~~lf~deid~~~ 219 (244)
+.... ......+++.+ ... .++.++++||+|.+.
T Consensus 74 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~ 115 (226)
T 2chg_A 74 MNASD-ERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT 115 (226)
T ss_dssp EETTC-TTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSC
T ss_pred ecccc-ccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcC
Confidence 33222 12222333222 111 245789999999874
No 102
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.61 E-value=9.4e-09 Score=78.51 Aligned_cols=63 Identities=14% Similarity=0.049 Sum_probs=43.6
Q ss_pred CcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHhhhcCCCCceehhhHhhhhc
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRLNHLLSVAPQNSIILLEDIDAAFV 220 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~q~~~lf~deid~~~~ 220 (244)
+..++|+||||||||+++++++.... -.+.++.........+..+..+. ..++|+||+|.+..
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~a~-~~~l~lDei~~l~~ 89 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNGT---PWVSPARVEYLIDMPMELLQKAE-GGVLYVGDIAQYSR 89 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTTS---CEECCSSTTHHHHCHHHHHHHTT-TSEEEEEECTTCCH
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCC---CeEEechhhCChHhhhhHHHhCC-CCeEEEeChHHCCH
Confidence 35589999999999999999998776 23444443333322444555443 57899999998743
No 103
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.60 E-value=7.2e-09 Score=93.55 Aligned_cols=64 Identities=14% Similarity=0.138 Sum_probs=50.7
Q ss_pred CCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCC
Q psy1371 115 RRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSER 190 (244)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~ 190 (244)
..+.++++.+.++....+++++ . .+..|+.++|+||||||||||+++|++...++.|.+.+.|.
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l-----------~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~ 193 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-L-----------TVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGE 193 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-S-----------CCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred CceEEeccceecCCCceEEeee-E-----------EecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEece
Confidence 4578889888876323466665 3 34445557999999999999999999999999999998875
No 104
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.59 E-value=2e-08 Score=77.46 Aligned_cols=60 Identities=12% Similarity=0.156 Sum_probs=42.3
Q ss_pred CCcceEEEcCCCCChhHHHHHHhcccCCCeE--EEEeCCCCCCHHHHHHHhhhcCCCCceehhhHhhhh
Q psy1371 153 YRRGYLLYGPPGCGKSSFITALAGELEFGIC--VLNLSERGLTDDRLNHLLSVAPQNSIILLEDIDAAF 219 (244)
Q Consensus 153 ~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g--~i~~~~~~~~~~~~~~~~~~~~q~~~lf~deid~~~ 219 (244)
.++.++|+||||+|||||++++++.+.+. | .+.+++...... ....++.++++||++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~~~~~~~~~~~~~~------~~~~~~~lLilDE~~~~~ 96 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GKNAAYIDAASMPLT------DAAFEAEYLAVDQVEKLG 96 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TCCEEEEETTTSCCC------GGGGGCSEEEEESTTCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CCcEEEEcHHHhhHH------HHHhCCCEEEEeCccccC
Confidence 56779999999999999999999988543 3 444444322211 223456788999997743
No 105
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.56 E-value=1.8e-08 Score=84.94 Aligned_cols=55 Identities=18% Similarity=0.173 Sum_probs=42.9
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCC-eEEEEeCC
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFG-ICVLNLSE 189 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~-~g~i~~~~ 189 (244)
.+++++.+. .+++++ + +++++.++++|||||||||++++|++++.++ .|.+...+
T Consensus 6 ~~l~~l~~~-----~vl~~i-----------~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g 61 (261)
T 2eyu_A 6 PEFKKLGLP-----DKVLEL-----------C--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 61 (261)
T ss_dssp CCGGGSSCC-----THHHHG-----------G--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CChHHCCCH-----HHHHHH-----------h--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcC
Confidence 456777765 255666 3 5666678999999999999999999999886 78876654
No 106
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.53 E-value=1.7e-08 Score=87.83 Aligned_cols=96 Identities=30% Similarity=0.424 Sum_probs=58.0
Q ss_pred CCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeE---EEEe
Q psy1371 111 GHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGIC---VLNL 187 (244)
Q Consensus 111 ~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g---~i~~ 187 (244)
.+++++..|+++..+.. +++.+...+..+++ + .++|+|||||||||+++++++.+.++.+ .+.+
T Consensus 16 ~~k~rp~~~~~~~g~~~----~~~~L~~~i~~g~~------~---~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~ 82 (340)
T 1sxj_C 16 VEKYRPETLDEVYGQNE----VITTVRKFVDEGKL------P---HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLEL 82 (340)
T ss_dssp HHHTCCSSGGGCCSCHH----HHHHHHHHHHTTCC------C---CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEE
T ss_pred HHHhCCCcHHHhcCcHH----HHHHHHHHHhcCCC------c---eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEE
Confidence 44567788888775543 44555554443221 1 2799999999999999999998754422 2233
Q ss_pred CCCC-CCHHHHHHHhhhcC--------CCCceehhhHhhhh
Q psy1371 188 SERG-LTDDRLNHLLSVAP--------QNSIILLEDIDAAF 219 (244)
Q Consensus 188 ~~~~-~~~~~~~~~~~~~~--------q~~~lf~deid~~~ 219 (244)
+..+ .....+++.+.... ...++++||+|.+.
T Consensus 83 ~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~ 123 (340)
T 1sxj_C 83 NASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT 123 (340)
T ss_dssp CTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC
T ss_pred cCcccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC
Confidence 3221 12334444332211 24678899998764
No 107
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.52 E-value=4.5e-09 Score=89.03 Aligned_cols=55 Identities=13% Similarity=0.094 Sum_probs=30.8
Q ss_pred ceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHhhhcCCCCce
Q psy1371 156 GYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRLNHLLSVAPQNSII 210 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~q~~~l 210 (244)
.++|+||||+|||||+++|+|...++.|.+.+++........++.+++++|+.-+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~ 58 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGV 58 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCC
Confidence 3799999999999999999999999999998877544322233457778876443
No 108
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.51 E-value=5.3e-08 Score=84.46 Aligned_cols=57 Identities=30% Similarity=0.433 Sum_probs=40.0
Q ss_pred cCCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC
Q psy1371 110 FGHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 110 ~~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
|.+.++|..|+++..+....+.+... +..+ ....++|+||||+||||+++++++.+.
T Consensus 27 ~~~k~~p~~~~~i~g~~~~~~~l~~~----l~~~---------~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 27 WVEKYRPKNLDEVTAQDHAVTVLKKT----LKSA---------NLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp HHHHTCCSSTTTCCSCCTTHHHHHHH----TTCT---------TCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHhhCCHHHHHHHHHH----HhcC---------CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34456778899998776655444333 3221 112389999999999999999998864
No 109
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.51 E-value=4.8e-08 Score=83.38 Aligned_cols=100 Identities=29% Similarity=0.419 Sum_probs=58.0
Q ss_pred eeecCCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC-----C
Q psy1371 107 WRPFGHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF-----G 181 (244)
Q Consensus 107 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~-----~ 181 (244)
+.+|.++++|..|+++..+....+.+ ...+.. + ....++|+||||+|||+++++++..+.. +
T Consensus 4 ~~~~~~k~~p~~~~~~~g~~~~~~~l----~~~l~~-------~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~ 70 (319)
T 2chq_A 4 FEIWVEKYRPRTLDEVVGQDEVIQRL----KGYVER-------K--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDN 70 (319)
T ss_dssp --CTTTTTSCSSGGGSCSCHHHHHHH----HTTTTT-------T--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHH
T ss_pred cccHHHhcCCCCHHHHhCCHHHHHHH----HHHHhC-------C--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCC
Confidence 34456778888999988776544433 322221 1 1123899999999999999999987521 2
Q ss_pred eEEEEeCCC-CC--CHHHHHHHhhhc----CCCCceehhhHhhhh
Q psy1371 182 ICVLNLSER-GL--TDDRLNHLLSVA----PQNSIILLEDIDAAF 219 (244)
Q Consensus 182 ~g~i~~~~~-~~--~~~~~~~~~~~~----~q~~~lf~deid~~~ 219 (244)
...++.... +. -...+....... .+..++++||+|.+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~ 115 (319)
T 2chq_A 71 FIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT 115 (319)
T ss_dssp CEEEETTSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC
T ss_pred eEEEeCccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC
Confidence 233443321 11 111222222122 235788999998764
No 110
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.51 E-value=2.1e-08 Score=86.65 Aligned_cols=65 Identities=18% Similarity=-0.009 Sum_probs=43.2
Q ss_pred CCCCCCCccccChhHHHHHHHHHHHHhcC--------hhhhhh---C-CCCCCcceEEEcCCCCChhHHHHHHhcccCCC
Q psy1371 114 KRRRPLNSVVLDSGVADRILTDIKQFVAD--------PAWYLD---R-GIPYRRGYLLYGPPGCGKSSFITALAGELEFG 181 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~l~~i~~~~~~--------~~~~~~---~-~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~ 181 (244)
...+++++|.+.|. ++++.++..+.. .+++.. . ..+.+.-++|.||||||||||+++|++++.+.
T Consensus 41 ~~~i~~~~v~~~y~---p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~ 117 (312)
T 3aez_A 41 GEQIDLLEVEEVYL---PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW 117 (312)
T ss_dssp TCCCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS
T ss_pred CCeEEeeehhhhhh---hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc
Confidence 34578888988884 344555443211 111100 1 24556669999999999999999999999764
No 111
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.51 E-value=4.9e-08 Score=84.94 Aligned_cols=88 Identities=22% Similarity=0.275 Sum_probs=47.8
Q ss_pred cCCCCCCCCCCccccChhHHHHHHHHHHHHh-cChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhc-ccCCCeEEEEe
Q psy1371 110 FGHPKRRRPLNSVVLDSGVADRILTDIKQFV-ADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAG-ELEFGICVLNL 187 (244)
Q Consensus 110 ~~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~-~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~-~~~~~~g~i~~ 187 (244)
|.++++|.+|+++..+.... +.+...+ .. .....++|+||||+||||+++++++ ++.++.|.+.+
T Consensus 4 w~~kyrP~~~~~~vg~~~~~----~~l~~~~~~~---------~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~ 70 (354)
T 1sxj_E 4 WVDKYRPKSLNALSHNEELT----NFLKSLSDQP---------RDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKI 70 (354)
T ss_dssp CTTTTCCCSGGGCCSCHHHH----HHHHTTTTCT---------TCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC---
T ss_pred chhccCCCCHHHhcCCHHHH----HHHHHHHhhC---------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEe
Confidence 45678888999998765443 3333322 11 1112289999999999999999999 66777777666
Q ss_pred CCCCCCH-HHHHHHhhhcCCCCce
Q psy1371 188 SERGLTD-DRLNHLLSVAPQNSII 210 (244)
Q Consensus 188 ~~~~~~~-~~~~~~~~~~~q~~~l 210 (244)
++..... ...+..+.++++...+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~ 94 (354)
T 1sxj_E 71 DVRQFVTASNRKLELNVVSSPYHL 94 (354)
T ss_dssp ---------------CCEECSSEE
T ss_pred cceeecccccccceeeeecccceE
Confidence 5533221 1113344555554433
No 112
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.50 E-value=9.6e-08 Score=77.42 Aligned_cols=96 Identities=19% Similarity=0.293 Sum_probs=57.4
Q ss_pred CCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCe--------
Q psy1371 111 GHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGI-------- 182 (244)
Q Consensus 111 ~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~-------- 182 (244)
.++..+..++++.......+.+.+.+. . + ..+..++|+||+|+||||+++.+++.+....
T Consensus 14 ~~~~~p~~~~~~~g~~~~~~~l~~~l~----~-------~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~ 81 (250)
T 1njg_A 14 ARKWRPQTFADVVGQEHVLTALANGLS----L-------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 81 (250)
T ss_dssp HHHTCCCSGGGCCSCHHHHHHHHHHHH----H-------T-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCS
T ss_pred hhccCCccHHHHhCcHHHHHHHHHHHH----c-------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCc
Confidence 344556678888766655444444432 1 1 1123589999999999999999998664311
Q ss_pred --------------EEEEeCCCC-CCHHHHHHHhhhcC------CCCceehhhHhhh
Q psy1371 183 --------------CVLNLSERG-LTDDRLNHLLSVAP------QNSIILLEDIDAA 218 (244)
Q Consensus 183 --------------g~i~~~~~~-~~~~~~~~~~~~~~------q~~~lf~deid~~ 218 (244)
..+..+... .....+++.+..+. ++.++++||+|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l 138 (250)
T 1njg_A 82 VCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 138 (250)
T ss_dssp CSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGS
T ss_pred ccHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccc
Confidence 112222111 22344556655543 3468899999886
No 113
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.48 E-value=4.7e-08 Score=79.97 Aligned_cols=37 Identities=22% Similarity=0.370 Sum_probs=28.2
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEe
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNL 187 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~ 187 (244)
++.++.++-++|+||||||||||+++|++++ + |.+.+
T Consensus 17 sl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~ 53 (218)
T 1z6g_A 17 RGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF 53 (218)
T ss_dssp -----CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE
T ss_pred ceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE
Confidence 7778888889999999999999999999988 4 55555
No 114
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.46 E-value=3.3e-09 Score=86.43 Aligned_cols=55 Identities=16% Similarity=0.069 Sum_probs=36.5
Q ss_pred CCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHhhhcCCCC
Q psy1371 153 YRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRLNHLLSVAPQNS 208 (244)
Q Consensus 153 ~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~q~~ 208 (244)
.++.++|+||||||||||+++|+|+ .|+.|.+............++.+++++|+.
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~ 75 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL 75 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH
Confidence 3455799999999999999999999 887776632110001112345678888865
No 115
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.45 E-value=1.1e-07 Score=77.36 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=34.2
Q ss_pred CCCCCCcceEEEcCCCCChhHHHHHHhcccCC-------CeEEEEeCCCC
Q psy1371 149 RGIPYRRGYLLYGPPGCGKSSFITALAGELEF-------GICVLNLSERG 191 (244)
Q Consensus 149 ~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~-------~~g~i~~~~~~ 191 (244)
-+++.++-++|+||||||||||+++|++.+.+ ..+.+.+++..
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 36788888999999999999999999996654 44566666543
No 116
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.45 E-value=4.4e-08 Score=79.95 Aligned_cols=92 Identities=20% Similarity=0.255 Sum_probs=54.5
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC---CeEEEEeCCCCC
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF---GICVLNLSERGL 192 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~---~~g~i~~~~~~~ 192 (244)
+.+|+++..... .+.+++.+...... +.++.++|+|||||||||++++++..+.. ....+......
T Consensus 24 ~~~~~~~~~~~~-~~~~~~~l~~~~~~---------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~- 92 (242)
T 3bos_A 24 DETFTSYYPAAG-NDELIGALKSAASG---------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA- 92 (242)
T ss_dssp TCSTTTSCC--C-CHHHHHHHHHHHHT---------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG-
T ss_pred CCChhhccCCCC-CHHHHHHHHHHHhC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH-
Confidence 367888776321 12344444433321 24567999999999999999999987653 33344433211
Q ss_pred CHHHHHHHhhhcCCCCceehhhHhhhhc
Q psy1371 193 TDDRLNHLLSVAPQNSIILLEDIDAAFV 220 (244)
Q Consensus 193 ~~~~~~~~~~~~~q~~~lf~deid~~~~ 220 (244)
..+.+.+....++.++++||+|.+..
T Consensus 93 --~~~~~~~~~~~~~~vliiDe~~~~~~ 118 (242)
T 3bos_A 93 --SISTALLEGLEQFDLICIDDVDAVAG 118 (242)
T ss_dssp --GSCGGGGTTGGGSSEEEEETGGGGTT
T ss_pred --HHHHHHHHhccCCCEEEEeccccccC
Confidence 01112223334568999999998754
No 117
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.45 E-value=1.1e-07 Score=81.92 Aligned_cols=66 Identities=18% Similarity=0.333 Sum_probs=42.6
Q ss_pred CCcceEEEcCCCCChhHHHHHHhccc---CCCeEEEEeCCCCCCHH---HH-----HHHhhhcCCCCceehhhHhhhhc
Q psy1371 153 YRRGYLLYGPPGCGKSSFITALAGEL---EFGICVLNLSERGLTDD---RL-----NHLLSVAPQNSIILLEDIDAAFV 220 (244)
Q Consensus 153 ~~~gi~l~Gp~GsGKTtl~~~la~~~---~~~~g~i~~~~~~~~~~---~~-----~~~~~~~~q~~~lf~deid~~~~ 220 (244)
.+..++|+|||||||||+++++++.+ +.+...++.... ... .+ ........+..++|+||+|.+..
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~ 112 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF--AQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSG 112 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH--HHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH--HHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccC
Confidence 34569999999999999999999987 445555543321 000 00 01111122468999999998764
No 118
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.45 E-value=2.8e-07 Score=77.08 Aligned_cols=89 Identities=17% Similarity=0.279 Sum_probs=50.7
Q ss_pred CCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC---CeEEEEeCCCCCCH
Q psy1371 118 PLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF---GICVLNLSERGLTD 194 (244)
Q Consensus 118 ~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~---~~g~i~~~~~~~~~ 194 (244)
+|+++.........+++.+.... ..+..++|+||||||||+++++++..... +...+.... ...
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~--~~~ 70 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA--LNE 70 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGG--SCH
T ss_pred ccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCC--CCh
Confidence 46676666555555655554332 22356899999999999999999987753 344444332 333
Q ss_pred HHHH-HHhhhc-----------------CCCCceehhhHhhhh
Q psy1371 195 DRLN-HLLSVA-----------------PQNSIILLEDIDAAF 219 (244)
Q Consensus 195 ~~~~-~~~~~~-----------------~q~~~lf~deid~~~ 219 (244)
..+. ..++.. .+..++|+||+|.+.
T Consensus 71 ~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~ 113 (265)
T 2bjv_A 71 NLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAP 113 (265)
T ss_dssp HHHHHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSC
T ss_pred hHHHHHhcCCcccccccccccccchhhhcCCcEEEEechHhcC
Confidence 2222 222211 135789999999874
No 119
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.44 E-value=1.1e-07 Score=97.30 Aligned_cols=126 Identities=13% Similarity=0.114 Sum_probs=78.2
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcC----------hhhhhh------CC------------CCCCcceEEEcCCCCChh
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVAD----------PAWYLD------RG------------IPYRRGYLLYGPPGCGKS 168 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~----------~~~~~~------~~------------~~~~~gi~l~Gp~GsGKT 168 (244)
..|+++..-.+.+..+++.+.+.+.+ ++.++. .| +|.++.++++||||||||
T Consensus 1017 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GKT 1096 (1706)
T 3cmw_A 1017 SSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKT 1096 (1706)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHH
T ss_pred ceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCChH
Confidence 66888776666777777888777733 445544 22 455566999999999999
Q ss_pred HHHHHHhcccCC---CeEEEEeCCCC-----------------C----CHHHHHHHhhhcC--CCCceehhhHhhhhccc
Q psy1371 169 SFITALAGELEF---GICVLNLSERG-----------------L----TDDRLNHLLSVAP--QNSIILLEDIDAAFVTR 222 (244)
Q Consensus 169 tl~~~la~~~~~---~~g~i~~~~~~-----------------~----~~~~~~~~~~~~~--q~~~lf~deid~~~~~r 222 (244)
+|+++++..... +...|++.+.- . +++.++..+..+. .++++|+|++|++++.+
T Consensus 1097 ~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~~~ 1176 (1706)
T 3cmw_A 1097 TLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKA 1176 (1706)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHH
T ss_pred HHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCccc
Confidence 999999875432 23344443310 1 3455666665454 36899999999998874
Q ss_pred C---cCc----ccHHHHHHHHHHhhhc
Q psy1371 223 E---ESS----QGLEDIDAAFVTREES 242 (244)
Q Consensus 223 ~---~~~----~~~~~~~~~~l~~~~~ 242 (244)
+ ... ...+++.+++|+.++-
T Consensus 1177 ~~~g~~~~~~~~~~~r~~~q~l~~~~~ 1203 (1706)
T 3cmw_A 1177 EIEGEIGDSHMGLAARMMSQAMRKLAG 1203 (1706)
T ss_dssp HHHSCTTCCCTTHHHHHHHHHHHHHHH
T ss_pred ccccccccccccHHHHHHHHHHHHHHh
Confidence 2 221 2345778888888764
No 120
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.44 E-value=6.3e-09 Score=94.49 Aligned_cols=57 Identities=12% Similarity=-0.035 Sum_probs=46.3
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeE-E-EEeCCCCCCHHHHHHHhhhcCCCCce
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGIC-V-LNLSERGLTDDRLNHLLSVAPQNSII 210 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g-~-i~~~~~~~~~~~~~~~~~~~~q~~~l 210 (244)
++.++.++.++|+||||||||||+|+|+|++.++.| . +.+++. .++.+++++|...+
T Consensus 132 sl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~------~~~~i~~vpq~~~l 190 (460)
T 2npi_A 132 RMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD------PQQPIFTVPGCISA 190 (460)
T ss_dssp HHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC------TTSCSSSCSSCCEE
T ss_pred ceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC------ccCCeeeeccchhh
Confidence 666777788999999999999999999999998888 7 888762 24557788886543
No 121
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.43 E-value=7.3e-08 Score=77.29 Aligned_cols=59 Identities=29% Similarity=0.371 Sum_probs=39.0
Q ss_pred CCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCC-CCcceEEEcCCCCChhHHHHHHhcccC
Q psy1371 115 RRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIP-YRRGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~-~~~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
.+.+|+++.+.......+++.+..++.. ..-. .+++++|+||||+|||+++++++....
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAE------YEPGKKMKGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHH------CCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHH------hhhccCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3457888877654334455555444331 1111 126799999999999999999998774
No 122
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.43 E-value=7.7e-08 Score=84.26 Aligned_cols=64 Identities=14% Similarity=0.108 Sum_probs=48.6
Q ss_pred CCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCC
Q psy1371 115 RRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSER 190 (244)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~ 190 (244)
..++.+++...++....+++++ .. +..|+.++|+||||||||||+++|++...++.|.+.+.+.
T Consensus 44 ~~i~~~~l~~~~~tg~~ald~l-l~-----------i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~ 107 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAIDGL-LT-----------CGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGE 107 (347)
T ss_dssp CSTTCCCCCSEECCSCHHHHHH-SC-----------EETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred CCeeecccceecCCCCEEEEee-ee-----------ecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecc
Confidence 4577788887775323466665 33 3344447999999999999999999999999998888764
No 123
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.42 E-value=4.9e-07 Score=86.73 Aligned_cols=96 Identities=23% Similarity=0.342 Sum_probs=61.7
Q ss_pred CCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC----------CCeEE
Q psy1371 115 RRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE----------FGICV 184 (244)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~----------~~~g~ 184 (244)
++..++++.......+.+++.+ ....+.+++|+||||||||++++++++.+. .....
T Consensus 181 ~~~~~d~~iGr~~~i~~l~~~l-------------~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~ 247 (758)
T 1r6b_X 181 RVGGIDPLIGREKELERAIQVL-------------CRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS 247 (758)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHH-------------TSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred hcCCCCCccCCHHHHHHHHHHH-------------hccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEE
Confidence 3456788877665444444333 122456689999999999999999998762 22222
Q ss_pred EEeCC-------CCCCHHHHHHHhhhcCC--CCceehhhHhhhhcccC
Q psy1371 185 LNLSE-------RGLTDDRLNHLLSVAPQ--NSIILLEDIDAAFVTRE 223 (244)
Q Consensus 185 i~~~~-------~~~~~~~~~~~~~~~~q--~~~lf~deid~~~~~r~ 223 (244)
+.... .+..+..++..+..+.+ +.++|+||+|.+...+.
T Consensus 248 ~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~ 295 (758)
T 1r6b_X 248 LDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGA 295 (758)
T ss_dssp CCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCC
T ss_pred EcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCC
Confidence 22111 22334567777776654 68999999999876543
No 124
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.40 E-value=2.6e-08 Score=86.90 Aligned_cols=82 Identities=13% Similarity=0.035 Sum_probs=55.4
Q ss_pred CCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH---
Q psy1371 118 PLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD--- 194 (244)
Q Consensus 118 ~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~--- 194 (244)
..+++...|+. ..+++++ ++.+..+..++|+||||+|||||+++|++.+.++.|.+.+.+.+...
T Consensus 31 e~~~~~~~~~~-~~~l~~i-----------~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~ 98 (337)
T 2qm8_A 31 ESRRADHRAAV-RDLIDAV-----------LPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRT 98 (337)
T ss_dssp TCSSHHHHHHH-HHHHHHH-----------GGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSS
T ss_pred eeCCcccccCh-HHHHHhC-----------CcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCccccc
Confidence 34556655643 4577888 66677777789999999999999999999988777777665532211
Q ss_pred ----HHHHHHhhhcCCCCcee
Q psy1371 195 ----DRLNHLLSVAPQNSIIL 211 (244)
Q Consensus 195 ----~~~~~~~~~~~q~~~lf 211 (244)
...++.+++++|...+|
T Consensus 99 ~~~~~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 99 GGSILGDKTRMARLAIDRNAF 119 (337)
T ss_dssp CCCSSCCGGGSTTGGGCTTEE
T ss_pred ccchHHHhhhheeeccCcccc
Confidence 01234456666654444
No 125
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.38 E-value=1e-08 Score=100.24 Aligned_cols=62 Identities=24% Similarity=0.285 Sum_probs=49.9
Q ss_pred CCCCccccChhH-HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC
Q psy1371 117 RPLNSVVLDSGV-ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE 189 (244)
Q Consensus 117 ~~~~~v~~~~~~-~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~ 189 (244)
++++++.+.|+. ...+++++ ++.+..|+.++|+||||||||||+|+|+|++.|+.|.+.+.+
T Consensus 672 L~v~nLs~~Y~g~~~~iL~dV-----------Sl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~ 734 (986)
T 2iw3_A 672 VKVTNMEFQYPGTSKPQITDI-----------NFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE 734 (986)
T ss_dssp EEEEEEEECCTTCSSCSEEEE-----------EEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECT
T ss_pred EEEEeeEEEeCCCCceeeecc-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcC
Confidence 446677777643 12345566 777888888999999999999999999999999999999875
No 126
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.38 E-value=4.5e-07 Score=88.22 Aligned_cols=94 Identities=19% Similarity=0.371 Sum_probs=53.4
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhccc----------CCCeEEE
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGEL----------EFGICVL 185 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~----------~~~~g~i 185 (244)
+.+++++.........+++.+ .. ..+.+++|+||||+|||++++.+++.+ +.....+
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l----~~---------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQIL----LR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHH----HC---------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred cCCCcccCCcHHHHHHHHHHH----hc---------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 456777776654444443333 11 234568999999999999999999876 3333333
Q ss_pred EeCC-------CCCCHHHHHHHhhhcC---CCCceehhhHhhhhccc
Q psy1371 186 NLSE-------RGLTDDRLNHLLSVAP---QNSIILLEDIDAAFVTR 222 (244)
Q Consensus 186 ~~~~-------~~~~~~~~~~~~~~~~---q~~~lf~deid~~~~~r 222 (244)
+... .+.....++..+..+. .++++|+||+|.+...+
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~ 279 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAG 279 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccC
Confidence 3222 1122344666665553 46799999999987543
No 127
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.38 E-value=1.2e-07 Score=81.68 Aligned_cols=85 Identities=12% Similarity=-0.049 Sum_probs=54.1
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChh-----hhhhCC---CCCCcceEEEcCCCCChhHHHHHHhcccC--CCeEEE
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPA-----WYLDRG---IPYRRGYLLYGPPGCGKSSFITALAGELE--FGICVL 185 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~-----~~~~~~---~~~~~gi~l~Gp~GsGKTtl~~~la~~~~--~~~g~i 185 (244)
.+++++|...|. .+++++...+.... .-.-++ ...+.-++|.|||||||||++++|++++. ++.|.+
T Consensus 37 ~i~~~~v~~~y~---~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i 113 (308)
T 1sq5_A 37 DLSLEEVAEIYL---PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRV 113 (308)
T ss_dssp TCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred ccchHhHHHHHH---HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeE
Confidence 467788888873 45666655541100 000111 23445589999999999999999999988 777777
Q ss_pred Ee---CCCCCCHHHHHHHhhhc
Q psy1371 186 NL---SERGLTDDRLNHLLSVA 204 (244)
Q Consensus 186 ~~---~~~~~~~~~~~~~~~~~ 204 (244)
.+ ++...... .++.++++
T Consensus 114 ~vi~~d~~~~~~~-~~~~~~~v 134 (308)
T 1sq5_A 114 ELITTDGFLHPNQ-VLKERGLM 134 (308)
T ss_dssp EEEEGGGGBCCHH-HHHHHTCT
T ss_pred EEEecCCccCcHH-HHHhCCEe
Confidence 76 76444332 23444555
No 128
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.38 E-value=2.2e-07 Score=73.59 Aligned_cols=38 Identities=32% Similarity=0.324 Sum_probs=29.9
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC
Q psy1371 150 GIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE 189 (244)
Q Consensus 150 ~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~ 189 (244)
+++.++-++|+|||||||||++++|++. ++.|.+.+++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~ 42 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHS 42 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcc
Confidence 3556677999999999999999999998 4456665554
No 129
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.37 E-value=2.2e-07 Score=79.81 Aligned_cols=81 Identities=12% Similarity=0.080 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhcChhhhh--hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCH-------HHH--
Q psy1371 129 ADRILTDIKQFVADPAWYL--DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD-------DRL-- 197 (244)
Q Consensus 129 ~~~~l~~i~~~~~~~~~~~--~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~-------~~~-- 197 (244)
.+.+.+.+...+....... ++.++.++-++++|||||||||+++.|++.+.++.|.+.+.+.+... ..+
T Consensus 73 ~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~ 152 (302)
T 3b9q_A 73 KDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAE 152 (302)
T ss_dssp HHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHH
Confidence 3445566666665443111 44456666799999999999999999999999888999888755432 122
Q ss_pred HHHhhhcCCCCc
Q psy1371 198 NHLLSVAPQNSI 209 (244)
Q Consensus 198 ~~~~~~~~q~~~ 209 (244)
+..+++++|+..
T Consensus 153 ~~~i~~v~q~~~ 164 (302)
T 3b9q_A 153 RTGCEIVVAEGD 164 (302)
T ss_dssp HHTCEEECCC--
T ss_pred hcCceEEEecCC
Confidence 234677777654
No 130
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.37 E-value=1.2e-07 Score=79.24 Aligned_cols=55 Identities=20% Similarity=0.190 Sum_probs=35.2
Q ss_pred CCCCCcc-ccChhHHHHHHHHHHHHhcChhhhhhCCCCC---CcceEEEcCCCCChhHHHHHHhcccCCC
Q psy1371 116 RRPLNSV-VLDSGVADRILTDIKQFVADPAWYLDRGIPY---RRGYLLYGPPGCGKSSFITALAGELEFG 181 (244)
Q Consensus 116 ~~~~~~v-~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~---~~gi~l~Gp~GsGKTtl~~~la~~~~~~ 181 (244)
.+.++++ ++.|+....+++++ ++.+.. ++.++|+|||||||||++++|++.++..
T Consensus 17 ~l~~~~~~~~~~~~~~~~l~~~-----------~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~ 75 (250)
T 3nwj_A 17 LLETGSLLHSPFDEEQQILKKK-----------AEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYT 75 (250)
T ss_dssp ---------------CHHHHHH-----------HHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCE
T ss_pred ceEEcceeeEEecCcchhhhhh-----------hhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCc
Confidence 4678888 88873345688999 666666 7789999999999999999999987653
No 131
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.36 E-value=7.8e-07 Score=75.79 Aligned_cols=26 Identities=35% Similarity=0.604 Sum_probs=23.2
Q ss_pred ceEEEcCCCCChhHHHHHHhcccCCC
Q psy1371 156 GYLLYGPPGCGKSSFITALAGELEFG 181 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~~~~ 181 (244)
.++|+||||||||++++++++.+...
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 48999999999999999999987543
No 132
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.35 E-value=7.4e-07 Score=77.72 Aligned_cols=58 Identities=26% Similarity=0.354 Sum_probs=39.8
Q ss_pred CCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 111 GHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 111 ~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
.+++++..|+++.......+.+.+.+. . + ..+..++|+||+|+||||+++++++.+..
T Consensus 7 ~~k~rp~~~~~~vg~~~~~~~L~~~l~----~-------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 7 ARKWRPQTFADVVGQEHVLTALANGLS----L-------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp HHHTCCCSTTTSCSCHHHHHHHHHHHH----H-------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred HHhhCCCchhhccCcHHHHHHHHHHHH----h-------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 344667788998877655554444441 1 1 11235799999999999999999987643
No 133
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.34 E-value=5.1e-07 Score=72.98 Aligned_cols=42 Identities=33% Similarity=0.387 Sum_probs=34.6
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHhcccCC---CeEEEEeCCCCC
Q psy1371 151 IPYRRGYLLYGPPGCGKSSFITALAGELEF---GICVLNLSERGL 192 (244)
Q Consensus 151 ~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~---~~g~i~~~~~~~ 192 (244)
.+.+..++|.||||||||||+++|++.+.+ ..+.+..++...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL 63 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence 345566999999999999999999999974 588888877433
No 134
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.34 E-value=1e-07 Score=75.20 Aligned_cols=58 Identities=17% Similarity=0.203 Sum_probs=42.4
Q ss_pred cceEEEcCCCCChhHHHHHHhcccCCC---eEEEEeCCCCCC------HHHHH-HHhh----hcCCCCceeh
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELEFG---ICVLNLSERGLT------DDRLN-HLLS----VAPQNSIILL 212 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~~~---~g~i~~~~~~~~------~~~~~-~~~~----~~~q~~~lf~ 212 (244)
+.++|+||||||||||+++|++++.+. .|.+.+++.+.. .+.+| +.++ +++|+..+|+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i 74 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI 74 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE
Confidence 357999999999999999999999887 899999885421 23555 4677 6778777763
No 135
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.33 E-value=2.5e-07 Score=78.94 Aligned_cols=95 Identities=24% Similarity=0.310 Sum_probs=57.3
Q ss_pred CCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC---CeEEEEeC
Q psy1371 112 HPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF---GICVLNLS 188 (244)
Q Consensus 112 ~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~---~~g~i~~~ 188 (244)
+.+++..++++..+....+.+.+.+ . -+-. ..++|+||+|+|||++++.++..+.. ....+.++
T Consensus 13 ~~~~p~~~~~~~g~~~~~~~l~~~l----~-------~~~~--~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 79 (323)
T 1sxj_B 13 EKYRPQVLSDIVGNKETIDRLQQIA----K-------DGNM--PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN 79 (323)
T ss_dssp HHTCCSSGGGCCSCTHHHHHHHHHH----H-------SCCC--CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC
T ss_pred HhcCCCCHHHHHCCHHHHHHHHHHH----H-------cCCC--CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec
Confidence 3456677888887765555444443 2 1211 22899999999999999999987532 12234444
Q ss_pred CCC-CCHHHHHHHhhhc--------C-CCCceehhhHhhhh
Q psy1371 189 ERG-LTDDRLNHLLSVA--------P-QNSIILLEDIDAAF 219 (244)
Q Consensus 189 ~~~-~~~~~~~~~~~~~--------~-q~~~lf~deid~~~ 219 (244)
..+ .....+++.+... . ...++++||+|.+.
T Consensus 80 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~ 120 (323)
T 1sxj_B 80 ASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMT 120 (323)
T ss_dssp TTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSC
T ss_pred CccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCC
Confidence 322 2334444433311 1 25688999998864
No 136
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.32 E-value=1.6e-06 Score=75.58 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=23.8
Q ss_pred CCCcceEEEcCCCCChhHHHHHHhccc
Q psy1371 152 PYRRGYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 152 ~~~~gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
..+..++|+||||+||||+++.+++.+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 345679999999999999999999877
No 137
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.32 E-value=5.6e-07 Score=78.83 Aligned_cols=72 Identities=17% Similarity=0.162 Sum_probs=48.3
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhccc--CCCe----EE-EEeCCCCCCHHHHHHHhhhcCCCCceehhhH-hhhh
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGEL--EFGI----CV-LNLSERGLTDDRLNHLLSVAPQNSIILLEDI-DAAF 219 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~--~~~~----g~-i~~~~~~~~~~~~~~~~~~~~q~~~lf~dei-d~~~ 219 (244)
..+++.++-++|+||||||||||++.+++.+ +++. |. +.+++.+.. .++.+.++.|..-++.+++ |++.
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~~v~~ni~ 201 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPDEVLKHIY 201 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHHHHGGGEE
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHHHHhhCEE
Confidence 5788999999999999999999999999988 4333 45 677664321 1233444445444555555 5554
Q ss_pred ccc
Q psy1371 220 VTR 222 (244)
Q Consensus 220 ~~r 222 (244)
..+
T Consensus 202 ~~~ 204 (349)
T 1pzn_A 202 VAR 204 (349)
T ss_dssp EEE
T ss_pred EEe
Confidence 443
No 138
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.31 E-value=2.9e-07 Score=83.77 Aligned_cols=62 Identities=19% Similarity=0.104 Sum_probs=45.0
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC-CH------HH--HHHHhhhcCCCCc
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL-TD------DR--LNHLLSVAPQNSI 209 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~-~~------~~--~~~~~~~~~q~~~ 209 (244)
++.+..+.-++|+|||||||||+++.|++++.+..|.+.+.+.+. .. .. .++.+++++|...
T Consensus 287 sl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~ 357 (503)
T 2yhs_A 287 NVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTG 357 (503)
T ss_dssp CCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTT
T ss_pred eeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccC
Confidence 344555666999999999999999999999988888888865433 21 11 2344677777643
No 139
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.31 E-value=4.9e-07 Score=77.31 Aligned_cols=95 Identities=26% Similarity=0.340 Sum_probs=55.5
Q ss_pred CCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCC---eEEEEeC
Q psy1371 112 HPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFG---ICVLNLS 188 (244)
Q Consensus 112 ~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~---~g~i~~~ 188 (244)
+.+++..|+++..+....+.+.+.+. . + ....++|+||||+||||++++++..+... ...+.++
T Consensus 17 ~k~~p~~~~~~~g~~~~~~~l~~~l~----~-------~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~ 83 (327)
T 1iqp_A 17 EKYRPQRLDDIVGQEHIVKRLKHYVK----T-------G--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELN 83 (327)
T ss_dssp HHTCCCSTTTCCSCHHHHHHHHHHHH----H-------T--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEE
T ss_pred hccCCCCHHHhhCCHHHHHHHHHHHH----c-------C--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEee
Confidence 44667789998877655555444331 1 1 11238999999999999999999875322 1133333
Q ss_pred CCCCC-HH----HHHHHhhhc----CCCCceehhhHhhhh
Q psy1371 189 ERGLT-DD----RLNHLLSVA----PQNSIILLEDIDAAF 219 (244)
Q Consensus 189 ~~~~~-~~----~~~~~~~~~----~q~~~lf~deid~~~ 219 (244)
..+.. .. .+....... .+..++++||+|.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~ 123 (327)
T 1iqp_A 84 ASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALT 123 (327)
T ss_dssp TTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC
T ss_pred ccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC
Confidence 22111 11 122211111 235788999998874
No 140
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.31 E-value=2.8e-07 Score=79.72 Aligned_cols=68 Identities=13% Similarity=0.247 Sum_probs=48.7
Q ss_pred CCCcceEEEcCCCCChhHHHHHHhcccC--------CCeEEEEeCCCCC-----------------------CHHHHHHH
Q psy1371 152 PYRRGYLLYGPPGCGKSSFITALAGELE--------FGICVLNLSERGL-----------------------TDDRLNHL 200 (244)
Q Consensus 152 ~~~~gi~l~Gp~GsGKTtl~~~la~~~~--------~~~g~i~~~~~~~-----------------------~~~~~~~~ 200 (244)
..+..++|+||||||||++++.++..+. +....+.+++... ....+++.
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~ 122 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY 122 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 3566799999999999999999998873 2355666665332 22345666
Q ss_pred hhhcC----CCCceehhhHhhhh
Q psy1371 201 LSVAP----QNSIILLEDIDAAF 219 (244)
Q Consensus 201 ~~~~~----q~~~lf~deid~~~ 219 (244)
|..++ .++++++||+|.+.
T Consensus 123 f~~~~~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 123 ITNVPKAKKRKTLILIQNPENLL 145 (318)
T ss_dssp HHHSCGGGSCEEEEEEECCSSSC
T ss_pred HHHhhhccCCceEEEEecHHHhh
Confidence 66542 35788999999986
No 141
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.31 E-value=2.2e-07 Score=87.08 Aligned_cols=59 Identities=25% Similarity=0.272 Sum_probs=40.4
Q ss_pred CCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCe-EEEEe
Q psy1371 114 KRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGI-CVLNL 187 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~-g~i~~ 187 (244)
.++..++++.... .+++.+...+. .++.++|+|||||||||++++|++.+++.. +.+.+
T Consensus 35 ~rp~~l~~i~G~~----~~l~~l~~~i~-----------~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~ 94 (604)
T 3k1j_A 35 VPEKLIDQVIGQE----HAVEVIKTAAN-----------QKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILV 94 (604)
T ss_dssp CCSSHHHHCCSCH----HHHHHHHHHHH-----------TTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEE
T ss_pred ccccccceEECch----hhHhhcccccc-----------CCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEE
Confidence 4455566665443 34566644443 345679999999999999999999987664 44443
No 142
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.30 E-value=6.4e-07 Score=77.09 Aligned_cols=58 Identities=28% Similarity=0.426 Sum_probs=38.6
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
+.+|+++.+.......+++.+..++. ++.-..+++++|+||||+|||+|+++++..+.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~------~~~~~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVE------QYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHH------HCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHH------hccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 45788887765333344444433332 22212357799999999999999999998665
No 143
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.28 E-value=4.4e-07 Score=79.73 Aligned_cols=80 Identities=13% Similarity=0.070 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcChhhhh--hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHH-------HH--H
Q psy1371 130 DRILTDIKQFVADPAWYL--DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDD-------RL--N 198 (244)
Q Consensus 130 ~~~l~~i~~~~~~~~~~~--~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~-------~~--~ 198 (244)
+.+.+.+...+....... ++.++.++-++++|||||||||+++.|++.+.++.|.+.+.+.+.... .+ +
T Consensus 131 ~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r 210 (359)
T 2og2_A 131 DALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAER 210 (359)
T ss_dssp HHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHh
Confidence 345555555554432111 445566677999999999999999999999998889998887654321 12 2
Q ss_pred HHhhhcCCCCc
Q psy1371 199 HLLSVAPQNSI 209 (244)
Q Consensus 199 ~~~~~~~q~~~ 209 (244)
..+.+++|+.-
T Consensus 211 ~~i~~v~q~~~ 221 (359)
T 2og2_A 211 TGCEIVVAEGD 221 (359)
T ss_dssp HTCEEECCSSS
T ss_pred cCeEEEEeccc
Confidence 34677777654
No 144
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.25 E-value=5.3e-08 Score=90.07 Aligned_cols=36 Identities=31% Similarity=0.365 Sum_probs=32.3
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEE
Q psy1371 150 GIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVL 185 (244)
Q Consensus 150 ~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i 185 (244)
.+++++.++|+||||||||||+|+|+|++.|+.|.+
T Consensus 43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~ 78 (538)
T 1yqt_A 43 VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGD 78 (538)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcc
Confidence 567777899999999999999999999999988763
No 145
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.25 E-value=5.4e-07 Score=72.28 Aligned_cols=43 Identities=21% Similarity=0.145 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCe
Q psy1371 129 ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGI 182 (244)
Q Consensus 129 ~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~ 182 (244)
....++++ ++.+++++.++|+|||||||||+++.|++.++...
T Consensus 11 ~~~~~~~~-----------~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~ 53 (199)
T 3vaa_A 11 VDLGTENL-----------YFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPF 53 (199)
T ss_dssp ------------------------CCCEEEEECCTTSCHHHHHHHHHHHHTCCE
T ss_pred CCCCCCce-----------eEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCE
Confidence 34566777 77777788899999999999999999999886543
No 146
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.22 E-value=1e-06 Score=80.15 Aligned_cols=87 Identities=23% Similarity=0.453 Sum_probs=51.7
Q ss_pred CCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhccc----------CCCeE
Q psy1371 114 KRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGEL----------EFGIC 183 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~----------~~~~g 183 (244)
.++..++++.......+.+++.+ .. ..+.+++|+||||+|||+++++++..+ +....
T Consensus 174 ~r~~~ld~iiGr~~~i~~l~~~l----~r---------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (468)
T 3pxg_A 174 AKEDSLDPVIGRSKEIQRVIEVL----SR---------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (468)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHH----HC---------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HhcCCCCCccCcHHHHHHHHHHH----hc---------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEE
Confidence 44567888887765555554443 11 234568999999999999999999876 22232
Q ss_pred EEEeCC--CCCCHHHHHHHhhhcC--CCCceehh
Q psy1371 184 VLNLSE--RGLTDDRLNHLLSVAP--QNSIILLE 213 (244)
Q Consensus 184 ~i~~~~--~~~~~~~~~~~~~~~~--q~~~lf~d 213 (244)
.++... .+..+..++..+..+. .+.++|+|
T Consensus 241 ~l~~~~~~~g~~e~~~~~~~~~~~~~~~~iLfiD 274 (468)
T 3pxg_A 241 TLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID 274 (468)
T ss_dssp CC----------CTTHHHHHHHHHTCCCCEEEEC
T ss_pred EeeCCccccchHHHHHHHHHHHHHhcCCeEEEEe
Confidence 232221 1112234555665554 46788888
No 147
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.22 E-value=4.3e-07 Score=75.32 Aligned_cols=39 Identities=15% Similarity=-0.046 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC
Q psy1371 130 DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 130 ~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
..+++++ ++.++.+.-++|.|||||||||++++|++.++
T Consensus 12 ~~~l~~i-----------sl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 12 DLGTENL-----------YFQSMRPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp ----------------------CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceeecce-----------eccCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567888 77777777789999999999999999999764
No 148
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.21 E-value=2.6e-07 Score=84.05 Aligned_cols=44 Identities=20% Similarity=0.177 Sum_probs=39.1
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL 192 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~ 192 (244)
++.++. +.++|+||||||||||+++|+|++.++.|.+.+++...
T Consensus 24 sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~ 67 (483)
T 3euj_A 24 TFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTE 67 (483)
T ss_dssp EEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTS
T ss_pred EEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEc
Confidence 667777 77899999999999999999999999999999888544
No 149
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.21 E-value=4.6e-06 Score=72.91 Aligned_cols=60 Identities=13% Similarity=0.160 Sum_probs=38.6
Q ss_pred CccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCc--ceEEEcCCCCChhHHHHHHhcccCCC--eEEEEeC
Q psy1371 120 NSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRR--GYLLYGPPGCGKSSFITALAGELEFG--ICVLNLS 188 (244)
Q Consensus 120 ~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~--gi~l~Gp~GsGKTtl~~~la~~~~~~--~g~i~~~ 188 (244)
+++.......+.+.+.+...... ..+. .++|+||||+||||+++.+++.+... ...+.++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRN---------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHS---------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred CCCCChHHHHHHHHHHHHHHHcC---------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 55655555555555555333221 1223 68999999999999999999988653 3444444
No 150
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.21 E-value=5.3e-07 Score=72.82 Aligned_cols=30 Identities=27% Similarity=0.417 Sum_probs=24.7
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHhcccC
Q psy1371 150 GIPYRRGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 150 ~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
.++.++-++|+||||||||||+++|+|++.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 455666689999999999999999999985
No 151
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.20 E-value=6.5e-07 Score=76.20 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=38.6
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeE-EEEeCCCCCCHHHHHH
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGIC-VLNLSERGLTDDRLNH 199 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g-~i~~~~~~~~~~~~~~ 199 (244)
.+++++++-++|.||||+|||||++.+++...+..| .+.+.+...+...+++
T Consensus 29 ~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~ 81 (296)
T 1cr0_A 29 TLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAE 81 (296)
T ss_dssp HCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHH
T ss_pred hcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHH
Confidence 788888888999999999999999999999877655 3433222334444443
No 152
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.20 E-value=4.3e-07 Score=83.95 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=35.3
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC
Q psy1371 151 IPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE 189 (244)
Q Consensus 151 ~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~ 189 (244)
++.++-++|+||||||||||+++|+|++.|+.|.+.+.+
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~ 329 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK 329 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence 456777999999999999999999999999999998765
No 153
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.20 E-value=8.9e-07 Score=81.60 Aligned_cols=65 Identities=22% Similarity=0.280 Sum_probs=51.2
Q ss_pred HHHHHHHHHhcChhhhhhC-CCCCCcceEEEcCCCCChhHHHHH--HhcccCCCeEEEEeCCCCCCHHH---HHHHhhhc
Q psy1371 131 RILTDIKQFVADPAWYLDR-GIPYRRGYLLYGPPGCGKSSFITA--LAGELEFGICVLNLSERGLTDDR---LNHLLSVA 204 (244)
Q Consensus 131 ~~l~~i~~~~~~~~~~~~~-~~~~~~gi~l~Gp~GsGKTtl~~~--la~~~~~~~g~i~~~~~~~~~~~---~~~~~~~~ 204 (244)
..++++ ++ +++.++.++|+||||||||||+++ ++|...++.|.+.+++.+. ... .++.++++
T Consensus 26 ~~Ld~i-----------~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~ 93 (525)
T 1tf7_A 26 EGFDDI-----------SHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWD 93 (525)
T ss_dssp TTHHHH-----------TTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCC
T ss_pred hhHHHh-----------cCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCC
Confidence 357888 88 899999999999999999999999 6899988889999887653 322 23446666
Q ss_pred CCC
Q psy1371 205 PQN 207 (244)
Q Consensus 205 ~q~ 207 (244)
+|+
T Consensus 94 ~q~ 96 (525)
T 1tf7_A 94 LAK 96 (525)
T ss_dssp HHH
T ss_pred hHH
Confidence 654
No 154
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.19 E-value=6.4e-07 Score=71.67 Aligned_cols=29 Identities=28% Similarity=0.541 Sum_probs=24.7
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHhcccC
Q psy1371 151 IPYRRGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 151 ~~~~~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
++.++-++|+|||||||||++++|++.++
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 44566689999999999999999999864
No 155
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.19 E-value=2.3e-07 Score=82.97 Aligned_cols=35 Identities=29% Similarity=0.254 Sum_probs=30.8
Q ss_pred ceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCC
Q psy1371 156 GYLLYGPPGCGKSSFITALAGELEFGICVLNLSER 190 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~ 190 (244)
.++|+||||+|||||+++|+|...++.|.+..++.
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~ 105 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVV 105 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCe
Confidence 47999999999999999999999988888777664
No 156
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.19 E-value=6e-07 Score=82.47 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=35.7
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE 189 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~ 189 (244)
++.++.+..+++.|||||||||++++|+++++++.+.+.+.+
T Consensus 254 ~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied 295 (511)
T 2oap_1 254 WLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIED 295 (511)
T ss_dssp HHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEES
T ss_pred HHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcC
Confidence 334455666899999999999999999999999999888876
No 157
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.19 E-value=2.5e-06 Score=74.60 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=33.4
Q ss_pred CccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhccc
Q psy1371 120 NSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 120 ~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
+++.......+.+.+.+..... -..++.++|+||||+|||++++.++..+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK---------NEVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT---------TCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4555555444445444433322 1234568999999999999999999876
No 158
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.17 E-value=5.6e-06 Score=79.48 Aligned_cols=62 Identities=27% Similarity=0.517 Sum_probs=40.5
Q ss_pred ceEEEcCCCCChhHHHHHHhccc---CCCeEEEEeCCC----CCCHHHHHHHhhhcCCCCceehhhHhhh
Q psy1371 156 GYLLYGPPGCGKSSFITALAGEL---EFGICVLNLSER----GLTDDRLNHLLSVAPQNSIILLEDIDAA 218 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~---~~~~g~i~~~~~----~~~~~~~~~~~~~~~q~~~lf~deid~~ 218 (244)
.++|+||||||||+++++++..+ ..+...++.+.. ..+...+...+.. ...+++|+||||.+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~l~~~~~~-~~~~vl~lDEi~~~ 591 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLTEKVRR-KPYSVVLLDAIEKA 591 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---CHHHHHH-CSSSEEEEECGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccchhhHHHHh-CCCeEEEEeCcccc
Confidence 49999999999999999999986 334555555441 1111122222222 24579999999876
No 159
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.17 E-value=9.3e-07 Score=71.05 Aligned_cols=28 Identities=36% Similarity=0.520 Sum_probs=23.4
Q ss_pred CCCcceEEEcCCCCChhHHHHHHhcccC
Q psy1371 152 PYRRGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 152 ~~~~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
++++.++|+||||+|||||+++|+++++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 3566789999999999999999999875
No 160
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.17 E-value=5.8e-07 Score=73.62 Aligned_cols=60 Identities=22% Similarity=0.135 Sum_probs=38.6
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHhcccCC--CeEEEEeCCCCCCHHHHHHHhhhcCCCCce
Q psy1371 150 GIPYRRGYLLYGPPGCGKSSFITALAGELEF--GICVLNLSERGLTDDRLNHLLSVAPQNSII 210 (244)
Q Consensus 150 ~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~--~~g~i~~~~~~~~~~~~~~~~~~~~q~~~l 210 (244)
..+.++-++|+||||||||||+++|++.+++ ..|.+.+.+..... ..++.+++++|....
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~~ 73 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHDE 73 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-TCCBTTTBEECCHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-ccccCceEEECCHHH
Confidence 4566777899999999999999999999875 45666665532211 112235555555433
No 161
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.17 E-value=1.1e-06 Score=70.35 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=27.5
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHhcccCCCeE
Q psy1371 150 GIPYRRGYLLYGPPGCGKSSFITALAGELEFGIC 183 (244)
Q Consensus 150 ~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g 183 (244)
.++.++-++|+|||||||||++++|++.+.++.+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 3456677899999999999999999999855544
No 162
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.17 E-value=1e-07 Score=89.40 Aligned_cols=36 Identities=28% Similarity=0.360 Sum_probs=32.1
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEE
Q psy1371 150 GIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVL 185 (244)
Q Consensus 150 ~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i 185 (244)
.++.|+.++|+||||+|||||+++|+|++.|+.|.+
T Consensus 113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~ 148 (607)
T 3bk7_A 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCED 148 (607)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTT
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCcc
Confidence 466777799999999999999999999999988773
No 163
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.14 E-value=8.5e-07 Score=76.54 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=29.1
Q ss_pred cceEEEcCCCCChhHHHHHHhcccCCCeEEEEe
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELEFGICVLNL 187 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~ 187 (244)
.+++|+||||||||+++++++..++.+...+..
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~ 79 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQF 79 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEec
Confidence 568999999999999999999998887776665
No 164
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.14 E-value=6.2e-06 Score=79.06 Aligned_cols=62 Identities=24% Similarity=0.440 Sum_probs=42.3
Q ss_pred ceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC--------------CH----HHHHHHhhhcCCCCceehhhHhh
Q psy1371 156 GYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL--------------TD----DRLNHLLSVAPQNSIILLEDIDA 217 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~--------------~~----~~~~~~~~~~~q~~~lf~deid~ 217 (244)
.++|+||||||||+++++++..++.+...++.+.... .. ..+...+... ..+++|+||+|.
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~-~~~vl~lDEi~~ 568 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKH-PHAVLLLDEIEK 568 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHC-SSEEEEEETGGG
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHhC-CCcEEEEeCccc
Confidence 4899999999999999999999876666666543111 00 1122233322 358999999987
Q ss_pred h
Q psy1371 218 A 218 (244)
Q Consensus 218 ~ 218 (244)
+
T Consensus 569 ~ 569 (758)
T 1r6b_X 569 A 569 (758)
T ss_dssp S
T ss_pred c
Confidence 5
No 165
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.14 E-value=8e-07 Score=76.40 Aligned_cols=57 Identities=16% Similarity=0.040 Sum_probs=42.6
Q ss_pred CCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCC-----H--HHH--HHHhhhcCCCCc
Q psy1371 153 YRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLT-----D--DRL--NHLLSVAPQNSI 209 (244)
Q Consensus 153 ~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~-----~--~~~--~~~~~~~~q~~~ 209 (244)
.++.++++|||||||||+++.|++++.++.|.+.+.+.+.. + ..+ +..+++++|..-
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~ 166 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEG 166 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCC
Confidence 34569999999999999999999999999999988775432 1 122 233567777543
No 166
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.13 E-value=1e-06 Score=82.69 Aligned_cols=69 Identities=20% Similarity=0.149 Sum_probs=36.0
Q ss_pred CCCCccccChhHH-HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCC-CeEEEEeCC
Q psy1371 117 RPLNSVVLDSGVA-DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF-GICVLNLSE 189 (244)
Q Consensus 117 ~~~~~v~~~~~~~-~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~-~~g~i~~~~ 189 (244)
+.++++...|+.+ ..+++.+......+ .-.++.+|. ++++||||||||||+++|+|+..| +.|.+...+
T Consensus 11 i~~~~l~~~~~~~~r~ll~~id~l~~~g-v~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g 81 (608)
T 3szr_A 11 VAENNLCSQYEEKVRPCIDLIDSLRALG-VEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCP 81 (608)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHS-CCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSC
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhCC-CCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcC
Confidence 5577888887654 34555554332111 111344444 999999999999999999999877 688877665
No 167
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.13 E-value=9.7e-07 Score=70.04 Aligned_cols=26 Identities=35% Similarity=0.572 Sum_probs=23.3
Q ss_pred cceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
+-++|+|||||||||++++|++++++
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 45799999999999999999998863
No 168
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.12 E-value=2.4e-06 Score=73.30 Aligned_cols=65 Identities=22% Similarity=0.289 Sum_probs=41.4
Q ss_pred CCcceEEEcCCCCChhHHHHHHhcccC---CCeEEEEeCCCCCCHHHHH-HHhhhcC-----------------CCCcee
Q psy1371 153 YRRGYLLYGPPGCGKSSFITALAGELE---FGICVLNLSERGLTDDRLN-HLLSVAP-----------------QNSIIL 211 (244)
Q Consensus 153 ~~~gi~l~Gp~GsGKTtl~~~la~~~~---~~~g~i~~~~~~~~~~~~~-~~~~~~~-----------------q~~~lf 211 (244)
.+..++|+||||||||+++++|+.... .+...++.. ......+. +.|+... ...++|
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~--~~~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~ 101 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCA--ALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 101 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECS--SCCHHHHHHHHTCCCSSCCC---CCCCCHHHHHTTSEEE
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCC--CCChHHHHHHhcCccccccCchhhhhcCHHHhcCCCEEE
Confidence 345689999999999999999998653 233344433 33332222 2333211 246899
Q ss_pred hhhHhhhh
Q psy1371 212 LEDIDAAF 219 (244)
Q Consensus 212 ~deid~~~ 219 (244)
+||+|.+.
T Consensus 102 LDEi~~l~ 109 (304)
T 1ojl_A 102 LDEIGDIS 109 (304)
T ss_dssp EESCTTCC
T ss_pred EeccccCC
Confidence 99998774
No 169
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.12 E-value=9.7e-07 Score=72.60 Aligned_cols=40 Identities=30% Similarity=0.469 Sum_probs=30.8
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHh--cccCCCeEEEEeCC
Q psy1371 150 GIPYRRGYLLYGPPGCGKSSFITALA--GELEFGICVLNLSE 189 (244)
Q Consensus 150 ~~~~~~gi~l~Gp~GsGKTtl~~~la--~~~~~~~g~i~~~~ 189 (244)
+++.++-++|+||||||||||+++++ +...++.+.+.+.+
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 67788889999999999999999999 55344444444443
No 170
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.11 E-value=2.1e-06 Score=82.37 Aligned_cols=87 Identities=23% Similarity=0.443 Sum_probs=53.0
Q ss_pred CCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhccc----------CCCeE
Q psy1371 114 KRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGEL----------EFGIC 183 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~----------~~~~g 183 (244)
.++..++++.......+.+++.+ . -..+.+++|+||||||||+++++++..+ +....
T Consensus 174 ~~~~~ld~iiG~~~~i~~l~~~l-----------~--~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (758)
T 3pxi_A 174 AKEDSLDPVIGRSKEIQRVIEVL-----------S--RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (758)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHH-----------H--CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HhhCCCCCccCchHHHHHHHHHH-----------h--CCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEE
Confidence 34556888887766555554443 1 1334568999999999999999999886 33333
Q ss_pred EEEeCC--CCCCHHHHHHHhhhcC--CCCceehh
Q psy1371 184 VLNLSE--RGLTDDRLNHLLSVAP--QNSIILLE 213 (244)
Q Consensus 184 ~i~~~~--~~~~~~~~~~~~~~~~--q~~~lf~d 213 (244)
.++... .+..+..++..+..+. +++++|+|
T Consensus 241 ~~~~g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD 274 (758)
T 3pxi_A 241 TLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID 274 (758)
T ss_dssp CC----------CTTHHHHHHHHHTCCCCEEEEC
T ss_pred EecccccccchHHHHHHHHHHHHHhcCCEEEEEc
Confidence 333311 1222235566666554 46889988
No 171
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.11 E-value=4.6e-06 Score=72.58 Aligned_cols=26 Identities=23% Similarity=0.510 Sum_probs=23.4
Q ss_pred CCcceEEEcCCCCChhHHHHHHhccc
Q psy1371 153 YRRGYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 153 ~~~gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
.++.++|+||||+||||+++.+++.+
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45569999999999999999999877
No 172
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.10 E-value=2.3e-06 Score=76.69 Aligned_cols=60 Identities=23% Similarity=0.146 Sum_probs=44.0
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE 189 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~ 189 (244)
..+++++.+.++.. .+++++ - ..++.-+++.|||||||||+++++++++.++.|.|...+
T Consensus 143 ~~~l~~Lg~~~~~~-~~L~~l-----------~--~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~e 202 (418)
T 1p9r_A 143 RLDLHSLGMTAHNH-DNFRRL-----------I--KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVE 202 (418)
T ss_dssp CCCGGGSCCCHHHH-HHHHHH-----------H--TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE
T ss_pred CCCHHHcCCCHHHH-HHHHHH-----------H--HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEec
Confidence 46788888887653 345554 1 122334799999999999999999999988877766544
No 173
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.08 E-value=7e-07 Score=82.59 Aligned_cols=37 Identities=30% Similarity=0.350 Sum_probs=33.1
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEe
Q psy1371 151 IPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNL 187 (244)
Q Consensus 151 ~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~ 187 (244)
++.|+.++|+||||||||||+++|+|++.++.|.+.+
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~ 345 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW 345 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 4567779999999999999999999999999888765
No 174
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.08 E-value=1.5e-06 Score=70.03 Aligned_cols=37 Identities=24% Similarity=0.282 Sum_probs=28.9
Q ss_pred CCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeC
Q psy1371 152 PYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLS 188 (244)
Q Consensus 152 ~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~ 188 (244)
+.+.-++|.|||||||||++++|++++++..+.+..+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d 40 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMD 40 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecC
Confidence 3455689999999999999999999987545555543
No 175
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.08 E-value=6.6e-07 Score=70.17 Aligned_cols=25 Identities=36% Similarity=0.497 Sum_probs=21.6
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHH
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFIT 172 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~ 172 (244)
++.++.++-++|+||||||||||++
T Consensus 3 sl~i~~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 3 KLTIPELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEESSEEEEEECCTTSCHHHHHH
T ss_pred cccCCCCEEEEEECCCCCCHHHHHH
Confidence 4556677779999999999999999
No 176
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.08 E-value=2.3e-06 Score=77.15 Aligned_cols=64 Identities=14% Similarity=0.335 Sum_probs=41.4
Q ss_pred CcceEEEcCCCCChhHHHHHHhccc-----CCCeEEEEeCCCCCCHHHHH---------HHhhhcC-CCCceehhhHhhh
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAGEL-----EFGICVLNLSERGLTDDRLN---------HLLSVAP-QNSIILLEDIDAA 218 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~~~-----~~~~g~i~~~~~~~~~~~~~---------~~~~~~~-q~~~lf~deid~~ 218 (244)
+..++|+||||+|||||++++++.+ +.....++... .. ..+. ....... ++.+|++||+|.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l 206 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK--FL-NDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFL 206 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH--HH-HHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH--HH-HHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccc
Confidence 4568999999999999999999977 33334443222 11 1111 1111223 5689999999988
Q ss_pred hc
Q psy1371 219 FV 220 (244)
Q Consensus 219 ~~ 220 (244)
..
T Consensus 207 ~~ 208 (440)
T 2z4s_A 207 IG 208 (440)
T ss_dssp SS
T ss_pred cC
Confidence 64
No 177
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.06 E-value=1e-06 Score=72.23 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=21.2
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHh-ccc
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALA-GEL 178 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la-~~~ 178 (244)
++.++.++-++|+|||||||||++++|+ +.+
T Consensus 21 sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 21 SMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred CcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 7777788889999999999999999999 887
No 178
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.05 E-value=8.5e-07 Score=83.11 Aligned_cols=48 Identities=27% Similarity=0.302 Sum_probs=39.1
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHhhhcCCCC
Q psy1371 151 IPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRLNHLLSVAPQNS 208 (244)
Q Consensus 151 ~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~q~~ 208 (244)
+..++.++|+||||||||||+|+|+|++.|+.|.+.+. ..+++++|+.
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~----------~~i~~v~Q~~ 426 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD----------LTVAYKPQYI 426 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC----------CCEEEECSSC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe----------eEEEEEecCc
Confidence 45667799999999999999999999999999888652 2366777754
No 179
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.04 E-value=3.5e-06 Score=67.47 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=23.6
Q ss_pred CCCcceEEEcCCCCChhHHHHHHhccc
Q psy1371 152 PYRRGYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 152 ~~~~gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
+.++-++|.|||||||||++++|++.+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 445668999999999999999999987
No 180
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.04 E-value=1.3e-06 Score=70.88 Aligned_cols=47 Identities=23% Similarity=0.139 Sum_probs=33.6
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHH
Q psy1371 150 GIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDR 196 (244)
Q Consensus 150 ~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~ 196 (244)
+++.++.++|+||||+|||||++.+++...+..+.+.+.+.+.+...
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~ 65 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDS 65 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHH
Confidence 67888889999999999999999999876544344433333334333
No 181
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.03 E-value=1.6e-06 Score=75.23 Aligned_cols=40 Identities=20% Similarity=0.153 Sum_probs=34.5
Q ss_pred CCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCC
Q psy1371 152 PYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERG 191 (244)
Q Consensus 152 ~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~ 191 (244)
+.+.-++++|||||||||+++.|++.+.++.|.+.+.+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D 166 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASD 166 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeec
Confidence 4556699999999999999999999999988888877643
No 182
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.03 E-value=1.7e-06 Score=68.56 Aligned_cols=25 Identities=24% Similarity=0.563 Sum_probs=22.4
Q ss_pred ceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 156 GYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
.++|+||||||||||+++|++++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3689999999999999999998753
No 183
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.03 E-value=1e-06 Score=77.88 Aligned_cols=44 Identities=20% Similarity=0.156 Sum_probs=35.3
Q ss_pred hhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCC-eEEEEe
Q psy1371 144 AWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFG-ICVLNL 187 (244)
Q Consensus 144 ~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~-~g~i~~ 187 (244)
+.++++.++++..++++|||||||||++++|++++.++ .|.+..
T Consensus 126 ~~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~ 170 (372)
T 2ewv_A 126 DKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIIT 170 (372)
T ss_dssp SSHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEE
Confidence 34445557777779999999999999999999999876 677643
No 184
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.03 E-value=1.2e-06 Score=81.08 Aligned_cols=32 Identities=25% Similarity=0.281 Sum_probs=29.1
Q ss_pred CcceEEEcCCCCChhHHHHHHhcccCCCeEEE
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAGELEFGICVL 185 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i 185 (244)
++-++|+||||||||||+|+|+|++.|+.|.+
T Consensus 25 Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i 56 (538)
T 3ozx_A 25 NTILGVLGKNGVGKTTVLKILAGEIIPNFGDP 56 (538)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSSCCCTTCT
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCCCcc
Confidence 34499999999999999999999999998876
No 185
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.02 E-value=6.7e-07 Score=71.61 Aligned_cols=25 Identities=40% Similarity=0.736 Sum_probs=22.6
Q ss_pred cceEEEcCCCCChhHHHHHHhcccC
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
+.++|+||||+||||+++.|++.+.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 4579999999999999999999874
No 186
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.02 E-value=2.4e-06 Score=76.57 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=34.2
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcc--eEEEcCCCCChhHHHHHHhccc
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRG--YLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~g--i~l~Gp~GsGKTtl~~~la~~~ 178 (244)
+.+.+ .+.|+.. . ++++ ++.++.|.. ++|+||||+|||||+++|+|..
T Consensus 17 l~~~~-~~~y~~~-~-L~~v-----------sl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 17 VPLAG-HVGFDSL-P-DQLV-----------NKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp CCCCC-CC-CC---C-HHHH-----------HHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred EEEee-EEEECCe-e-cCCC-----------ceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 33444 4444433 3 7888 777777777 8999999999999999999974
No 187
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.01 E-value=1e-05 Score=69.40 Aligned_cols=65 Identities=8% Similarity=0.063 Sum_probs=46.7
Q ss_pred cceEEEcCCCCChhHHHHHHhccc------CCCeEEEEeCCCCCCHHHHHHHhhhcCC------CCceehhhHhhhh
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGEL------EFGICVLNLSERGLTDDRLNHLLSVAPQ------NSIILLEDIDAAF 219 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~------~~~~g~i~~~~~~~~~~~~~~~~~~~~q------~~~lf~deid~~~ 219 (244)
..++|+||||+||||++++++..+ .++...++.++....-+.+|+.+..+.. ..++++||+|.+.
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt 95 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMT 95 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhC
Confidence 358999999999999999998753 4566555544434555566666555432 3588899999874
No 188
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.00 E-value=3e-06 Score=72.60 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=26.9
Q ss_pred CCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEe---CCCCC
Q psy1371 153 YRRGYLLYGPPGCGKSSFITALAGELEFGICVLNL---SERGL 192 (244)
Q Consensus 153 ~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~---~~~~~ 192 (244)
.++.++++||||+|||||+++|+++..++.|.+.+ .|...
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~ 210 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHT 210 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------C
T ss_pred cCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCc
Confidence 35568999999999999999999999999999988 55433
No 189
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.97 E-value=1.3e-05 Score=69.37 Aligned_cols=65 Identities=18% Similarity=0.228 Sum_probs=44.5
Q ss_pred cceEEEcCCCCChhHHHHHHhcccCC------------------------CeEEEEeC--CCCCCHHHHHHHhhhcC---
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELEF------------------------GICVLNLS--ERGLTDDRLNHLLSVAP--- 205 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~~------------------------~~g~i~~~--~~~~~~~~~~~~~~~~~--- 205 (244)
..++|+||+|+|||++++++++.+.. +...+... +.....+.+|+.+..+.
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~~~~ 104 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHA 104 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTTSCC
T ss_pred eeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHhhcc
Confidence 45899999999999999999986542 33333332 23345556666655543
Q ss_pred ---CCCceehhhHhhhh
Q psy1371 206 ---QNSIILLEDIDAAF 219 (244)
Q Consensus 206 ---q~~~lf~deid~~~ 219 (244)
...++++||+|.+.
T Consensus 105 ~~~~~kvviIdead~l~ 121 (334)
T 1a5t_A 105 RLGGAKVVWVTDAALLT 121 (334)
T ss_dssp TTSSCEEEEESCGGGBC
T ss_pred ccCCcEEEEECchhhcC
Confidence 23688899999874
No 190
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.97 E-value=2.8e-06 Score=79.60 Aligned_cols=36 Identities=25% Similarity=0.222 Sum_probs=31.9
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEE
Q psy1371 150 GIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVL 185 (244)
Q Consensus 150 ~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i 185 (244)
.++.|+-++|+||||||||||+++|+|++.|+.|.+
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i 134 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence 345667799999999999999999999999998876
No 191
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.97 E-value=1.4e-06 Score=75.28 Aligned_cols=73 Identities=12% Similarity=0.118 Sum_probs=42.7
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEe--CC----CCCC-HHHHHHHhhhcCCCCceehhhHhhhhccc
Q psy1371 150 GIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNL--SE----RGLT-DDRLNHLLSVAPQNSIILLEDIDAAFVTR 222 (244)
Q Consensus 150 ~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~--~~----~~~~-~~~~~~~~~~~~q~~~lf~deid~~~~~r 222 (244)
++++++.++|+||||||||+|+..++...+.....+.. .+ .... +..+++....+.+..++++|+++.+...+
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~LLVIDsI~aL~~~~ 198 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDSLKNVIGAA 198 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCSEEEEECCTTTC---
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCCEEEEeccccccccc
Confidence 56677778999999999999999998652222223343 11 1111 22233333333222288999999886543
No 192
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.96 E-value=3.4e-06 Score=66.55 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=23.4
Q ss_pred CcceEEEcCCCCChhHHHHHHhcccC
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
++-++|+||||||||||+++|++.++
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45589999999999999999999875
No 193
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.96 E-value=3.4e-06 Score=65.53 Aligned_cols=27 Identities=41% Similarity=0.668 Sum_probs=24.1
Q ss_pred CcceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
++.++|.|||||||||++++|++.+++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 345899999999999999999998875
No 194
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.95 E-value=1.6e-06 Score=76.01 Aligned_cols=56 Identities=23% Similarity=0.208 Sum_probs=34.5
Q ss_pred CcceEEEcCCCCChhHHHHHHhcccC-CCeEEEEeC-CCCCCHHHHHHHhhhcCCCCce
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAGELE-FGICVLNLS-ERGLTDDRLNHLLSVAPQNSII 210 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~~~~-~~~g~i~~~-~~~~~~~~~~~~~~~~~q~~~l 210 (244)
++.++|+||||+|||||+++|++... +..|.+... +.+.. ...+..+.+++|...+
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l 272 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH-TTTAARLYHFPHGGDV 272 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC--------------CCCEEEECTTSCEE
T ss_pred CCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc-ceEEEEEEEECCCCEe
Confidence 45689999999999999999999998 888988765 43321 1122235566665543
No 195
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.93 E-value=2.3e-06 Score=75.11 Aligned_cols=40 Identities=15% Similarity=0.117 Sum_probs=33.8
Q ss_pred hCCCCC--CcceEEEcCCCCChhHHHHHHhcccCCCe----EEEEe
Q psy1371 148 DRGIPY--RRGYLLYGPPGCGKSSFITALAGELEFGI----CVLNL 187 (244)
Q Consensus 148 ~~~~~~--~~gi~l~Gp~GsGKTtl~~~la~~~~~~~----g~i~~ 187 (244)
++.+.. ++.++|+||||||||||+++|+|++.++. |.+.+
T Consensus 162 ~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i 207 (365)
T 1lw7_A 162 PKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFV 207 (365)
T ss_dssp CTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHH
T ss_pred CHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHH
Confidence 455566 77799999999999999999999999987 66554
No 196
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.92 E-value=1.1e-05 Score=65.99 Aligned_cols=42 Identities=19% Similarity=0.174 Sum_probs=33.3
Q ss_pred CCCCCCcceEEEcCCCCChhHHHHHHhcc--cCC-----CeEEEEeCCC
Q psy1371 149 RGIPYRRGYLLYGPPGCGKSSFITALAGE--LEF-----GICVLNLSER 190 (244)
Q Consensus 149 ~~~~~~~gi~l~Gp~GsGKTtl~~~la~~--~~~-----~~g~i~~~~~ 190 (244)
-+++.++-++|+||||+|||||++.+++. ..+ ..+.+.++..
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 46788888999999999999999999994 433 4566776653
No 197
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.92 E-value=6.4e-06 Score=66.50 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=25.2
Q ss_pred CCCcceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 152 PYRRGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 152 ~~~~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
+.++-++|+||||+||||+++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 34556899999999999999999998865
No 198
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.89 E-value=4.2e-06 Score=67.69 Aligned_cols=30 Identities=27% Similarity=0.486 Sum_probs=26.6
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHhcccC
Q psy1371 150 GIPYRRGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 150 ~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
++|...+++++|||||||||++.+|++.+.
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 467767799999999999999999999875
No 199
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.88 E-value=1.5e-05 Score=72.98 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=23.8
Q ss_pred CcceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
+..++|+||||||||+++++|+.....
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa~~l~~ 67 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLKFAFQN 67 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGGGGBSS
T ss_pred CCeeEeecCchHHHHHHHHHHHHHHhh
Confidence 346899999999999999999998854
No 200
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.86 E-value=5.9e-07 Score=74.04 Aligned_cols=36 Identities=25% Similarity=0.311 Sum_probs=27.2
Q ss_pred eEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCC
Q psy1371 157 YLLYGPPGCGKSSFITALAGELEFGICVLNLSERGL 192 (244)
Q Consensus 157 i~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~ 192 (244)
++|+||||||||||+++|++.+.++.|.+.+++...
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 65 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred EEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence 388999999999999999999999988888877544
No 201
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.83 E-value=3.1e-05 Score=82.74 Aligned_cols=69 Identities=26% Similarity=0.537 Sum_probs=42.1
Q ss_pred CCcceEEEcCCCCChhHHH-HHHhcccCCCeEEEEeCCCCCCHHHHHHHhhh-------------cC----CCCceehhh
Q psy1371 153 YRRGYLLYGPPGCGKSSFI-TALAGELEFGICVLNLSERGLTDDRLNHLLSV-------------AP----QNSIILLED 214 (244)
Q Consensus 153 ~~~gi~l~Gp~GsGKTtl~-~~la~~~~~~~g~i~~~~~~~~~~~~~~~~~~-------------~~----q~~~lf~de 214 (244)
.+++++|+||||||||+++ ++++...+.....+..+... +...+.+.+.. .| +.+++|+||
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~t-s~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDE 1344 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDT-TTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDE 1344 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTC-CHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEET
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCC-CHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecc
Confidence 4577899999999999999 55555434344445544422 22333332221 11 236999999
Q ss_pred Hhhhhccc
Q psy1371 215 IDAAFVTR 222 (244)
Q Consensus 215 id~~~~~r 222 (244)
+|.....+
T Consensus 1345 inmp~~d~ 1352 (2695)
T 4akg_A 1345 INLPKLDK 1352 (2695)
T ss_dssp TTCSCCCS
T ss_pred cccccccc
Confidence 98765544
No 202
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.83 E-value=6.8e-06 Score=65.80 Aligned_cols=29 Identities=28% Similarity=0.185 Sum_probs=25.3
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHhcccC
Q psy1371 151 IPYRRGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 151 ~~~~~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
.+.+.-++|.|||||||||++++|++.+.
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34566689999999999999999999885
No 203
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.82 E-value=5e-06 Score=68.76 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=27.1
Q ss_pred CcceEEEcCCCCChhHHHHHHh---cccCCCeEEEEe
Q psy1371 154 RRGYLLYGPPGCGKSSFITALA---GELEFGICVLNL 187 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la---~~~~~~~g~i~~ 187 (244)
+..++|+|||||||||++++|+ |...++.|.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~ 63 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLR 63 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHH
Confidence 4568999999999999999999 776665554443
No 204
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.81 E-value=5e-06 Score=65.76 Aligned_cols=24 Identities=42% Similarity=0.739 Sum_probs=20.8
Q ss_pred cceEEEcCCCCChhHHHHHHhccc
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
+-++|+|||||||||++++|++..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHhccc
Confidence 347899999999999999999743
No 205
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.80 E-value=3.5e-06 Score=73.98 Aligned_cols=27 Identities=33% Similarity=0.436 Sum_probs=24.2
Q ss_pred cceEEEcCCCCChhHHHHHHhcccCCC
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELEFG 181 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~~~ 181 (244)
.-+++.|||||||||++++++++++++
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 348999999999999999999998765
No 206
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.79 E-value=1.1e-05 Score=64.95 Aligned_cols=29 Identities=28% Similarity=0.422 Sum_probs=24.7
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHhcccC
Q psy1371 151 IPYRRGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 151 ~~~~~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
...++-++|+||||+|||||+++|++.++
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 33455689999999999999999998875
No 207
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.78 E-value=5.9e-06 Score=64.86 Aligned_cols=25 Identities=28% Similarity=0.141 Sum_probs=21.9
Q ss_pred ceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 156 GYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
-.+|+|||||||||++++|+..+.+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3689999999999999999987654
No 208
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.78 E-value=2.7e-06 Score=73.15 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=23.3
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEe
Q psy1371 151 IPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNL 187 (244)
Q Consensus 151 ~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~ 187 (244)
+..++.++|+||||+|||||+++|++...+..|.+..
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~ 206 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 206 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcccccccccceee
Confidence 3456779999999999999999999999999998886
No 209
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.78 E-value=1.1e-05 Score=75.49 Aligned_cols=30 Identities=30% Similarity=0.419 Sum_probs=27.3
Q ss_pred cceEEEcCCCCChhHHHHHHhcccCCCeEE
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELEFGICV 184 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~ 184 (244)
+-++|+||||||||||+++|+|++.|+.|.
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~ 408 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQ 408 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence 348999999999999999999999998875
No 210
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.78 E-value=3.6e-06 Score=67.31 Aligned_cols=31 Identities=19% Similarity=0.141 Sum_probs=26.0
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhccc
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
++.++.+..++++||||+|||||++++++..
T Consensus 20 ~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 20 HLPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp GSSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred HCCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4556666669999999999999999999987
No 211
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.78 E-value=1.4e-05 Score=64.00 Aligned_cols=33 Identities=18% Similarity=0.068 Sum_probs=26.5
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHhcccCCCeE
Q psy1371 151 IPYRRGYLLYGPPGCGKSSFITALAGELEFGIC 183 (244)
Q Consensus 151 ~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g 183 (244)
.+.+.-++|.||+||||||+++.|++.+.+..+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~ 51 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGI 51 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence 344556899999999999999999998754433
No 212
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.78 E-value=3.3e-05 Score=75.13 Aligned_cols=32 Identities=31% Similarity=0.667 Sum_probs=25.4
Q ss_pred ceEEEcCCCCChhHHHHHHhccc---CCCeEEEEe
Q psy1371 156 GYLLYGPPGCGKSSFITALAGEL---EFGICVLNL 187 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~---~~~~g~i~~ 187 (244)
.++|+||||||||+++++|+..+ ..+...++.
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~ 624 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 624 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEec
Confidence 58999999999999999999987 334444443
No 213
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.76 E-value=9.7e-06 Score=69.46 Aligned_cols=54 Identities=24% Similarity=0.212 Sum_probs=35.5
Q ss_pred CcceEEEcCCCCChhHHHHHHhcccCCCeEEEEe---CCCCCCHH--HHH-HHhhhcCCCC
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAGELEFGICVLNL---SERGLTDD--RLN-HLLSVAPQNS 208 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~---~~~~~~~~--~~~-~~~~~~~q~~ 208 (244)
++.++|+||||+|||||+++|+ ...+..|.+.. .|...+.. ..+ +..++++|.+
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~p 224 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTP 224 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECc
Confidence 5568999999999999999999 99999999887 55433211 111 1356776654
No 214
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.76 E-value=1.1e-05 Score=62.82 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=22.9
Q ss_pred CcceEEEcCCCCChhHHHHHHhcccC
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
++.++|.|||||||||+++.|++.++
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 45589999999999999999998764
No 215
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.75 E-value=2.6e-05 Score=62.70 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=25.3
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHhc
Q psy1371 150 GIPYRRGYLLYGPPGCGKSSFITALAG 176 (244)
Q Consensus 150 ~~~~~~gi~l~Gp~GsGKTtl~~~la~ 176 (244)
++++++-++|+||||+||||+++.+++
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 688888899999999999999999998
No 216
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.75 E-value=1.5e-05 Score=62.06 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=25.8
Q ss_pred cceEEEcCCCCChhHHHHHHhcccCCCeEEEE
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELEFGICVLN 186 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~ 186 (244)
+-+.+.|||||||||+++.|+..++.....++
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~ 35 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFG 35 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEec
Confidence 45789999999999999999998765544333
No 217
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.75 E-value=4.7e-06 Score=74.10 Aligned_cols=31 Identities=26% Similarity=0.213 Sum_probs=25.7
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccC
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
++.+.++ -++|+||||||||||+++|++++.
T Consensus 55 ~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 55 ELELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EEECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred EEecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 4556666 689999999999999999977664
No 218
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.72 E-value=8.4e-06 Score=67.89 Aligned_cols=35 Identities=23% Similarity=0.248 Sum_probs=28.5
Q ss_pred CCCcceEEEcCCCCChhHHHHHHh---cccCCCeEEEE
Q psy1371 152 PYRRGYLLYGPPGCGKSSFITALA---GELEFGICVLN 186 (244)
Q Consensus 152 ~~~~gi~l~Gp~GsGKTtl~~~la---~~~~~~~g~i~ 186 (244)
+.+..++|.||+||||||++++|+ |+..++.|.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 345568999999999999999999 76666666665
No 219
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.72 E-value=5.4e-05 Score=67.37 Aligned_cols=42 Identities=24% Similarity=0.282 Sum_probs=31.1
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHh--cccCC-----CeEEEEeCCCC
Q psy1371 150 GIPYRRGYLLYGPPGCGKSSFITALA--GELEF-----GICVLNLSERG 191 (244)
Q Consensus 150 ~~~~~~gi~l~Gp~GsGKTtl~~~la--~~~~~-----~~g~i~~~~~~ 191 (244)
|++.++-++|+||||||||||++.++ ...++ ..+.+.+++..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 68888889999999999999999554 44443 23466666643
No 220
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.71 E-value=3.3e-05 Score=64.21 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=27.5
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEE
Q psy1371 151 IPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLN 186 (244)
Q Consensus 151 ~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~ 186 (244)
...+..++|.|||||||||+++.|+..++.....++
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~ 64 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIID 64 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEEC
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEe
Confidence 344556899999999999999999998864333333
No 221
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.69 E-value=1.8e-05 Score=64.10 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=22.7
Q ss_pred cceEEEcCCCCChhHHHHHHhcccC
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
..++|.|||||||||+++.|++.++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4589999999999999999999875
No 222
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.68 E-value=2.1e-05 Score=67.52 Aligned_cols=58 Identities=14% Similarity=-0.015 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeC
Q psy1371 130 DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLS 188 (244)
Q Consensus 130 ~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~ 188 (244)
+.+.+.+...+....-+ ++....++.++++||||+||||+++.||+.+.+..+.+.+.
T Consensus 81 ~~~~~~l~~~l~~~~~~-~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv 138 (306)
T 1vma_A 81 ESLKEIILEILNFDTKL-NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA 138 (306)
T ss_dssp HHHHHHHHHHTCSCCCC-CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHhCCCCCC-cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE
Confidence 44555565555543311 33344556699999999999999999999987655555443
No 223
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.66 E-value=2.6e-05 Score=67.29 Aligned_cols=52 Identities=29% Similarity=0.364 Sum_probs=34.7
Q ss_pred CCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC
Q psy1371 115 RRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
++..|+++......+..+. .... .+...+++|+||||||||+++++++..+.
T Consensus 19 ~~~~f~~i~G~~~~~~~l~----~~~~---------~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALL----LTAV---------DPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHH----HHHH---------CGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCCchhccChHHHHHHHH----HHhh---------CCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 4567888877655433221 1110 11234589999999999999999998775
No 224
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.65 E-value=6.3e-05 Score=64.98 Aligned_cols=35 Identities=20% Similarity=0.105 Sum_probs=28.4
Q ss_pred ceEEEcCCCCChhHHHHHHhcccCC-----CeEEEEeCCC
Q psy1371 156 GYLLYGPPGCGKSSFITALAGELEF-----GICVLNLSER 190 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~~~-----~~g~i~~~~~ 190 (244)
-++|.|||||||||++++|++++.. ..+.+..++.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 4899999999999999999999863 3455666663
No 225
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.65 E-value=7.5e-05 Score=63.40 Aligned_cols=33 Identities=33% Similarity=0.561 Sum_probs=25.4
Q ss_pred CcceEEEcCCCCChhHHHHHHhcccCCCeEEEE
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAGELEFGICVLN 186 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~ 186 (244)
+.-++|.|||||||||+++.|+..++.....++
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is 65 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVID 65 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 445889999999999999999987643334443
No 226
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.65 E-value=3e-05 Score=61.09 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=25.0
Q ss_pred CCCcceEEEcCCCCChhHHHHHHhcccCCC
Q psy1371 152 PYRRGYLLYGPPGCGKSSFITALAGELEFG 181 (244)
Q Consensus 152 ~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~ 181 (244)
+.+.-+.|.|||||||||+++.|+..++..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 32 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLP 32 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 445568999999999999999999877543
No 227
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.63 E-value=2.5e-05 Score=62.57 Aligned_cols=28 Identities=18% Similarity=0.097 Sum_probs=23.9
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHhccc
Q psy1371 151 IPYRRGYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 151 ~~~~~gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
++.+.-++|.|||||||||+++.|++.+
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3444558999999999999999999976
No 228
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.63 E-value=3.7e-05 Score=60.80 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.1
Q ss_pred ceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 156 GYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
.++++||||+|||||++.+++...+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~ 55 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFN 55 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC
Confidence 3799999999999999999987653
No 229
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.62 E-value=3.1e-05 Score=61.11 Aligned_cols=32 Identities=31% Similarity=0.430 Sum_probs=25.1
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcc-cC
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGE-LE 179 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~-~~ 179 (244)
++..+.++.++|+|+|||||||+++.|+.. ++
T Consensus 4 ~~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g 36 (184)
T 1y63_A 4 SMEQPKGINILITGTPGTGKTSMAEMIAAELDG 36 (184)
T ss_dssp --CCCSSCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CcCCCCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 344455566999999999999999999987 44
No 230
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.62 E-value=3.2e-05 Score=60.67 Aligned_cols=29 Identities=28% Similarity=0.203 Sum_probs=24.8
Q ss_pred CcceEEEcCCCCChhHHHHHHhcccCCCe
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAGELEFGI 182 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~~~~~~~ 182 (244)
++.+.|+|||||||||+++.|+..++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~ 33 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRIL 33 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 45689999999999999999998876543
No 231
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.61 E-value=3e-05 Score=59.78 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=22.8
Q ss_pred ceEEEcCCCCChhHHHHHHhcccCCC
Q psy1371 156 GYLLYGPPGCGKSSFITALAGELEFG 181 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~~~~ 181 (244)
-++|.|||||||||+++.|+..++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~ 28 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYP 28 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 36899999999999999999887654
No 232
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.61 E-value=8.9e-06 Score=71.83 Aligned_cols=54 Identities=15% Similarity=0.256 Sum_probs=39.4
Q ss_pred CCCCCCCccccChhHHHHHHH--------------HHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhccc
Q psy1371 114 KRRRPLNSVVLDSGVADRILT--------------DIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~l~--------------~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
+..+.|+++.+.|...+..++ ++ .+.+..|+.++|+||||||||||++.|++..
T Consensus 131 ~~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~-----------~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 131 RNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDL-----------ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTSCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHH-----------HSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCCccccccCCCCcccccceeeee-----------eeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 456778888877654322223 23 4566667779999999999999999999865
No 233
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.61 E-value=3.2e-05 Score=80.46 Aligned_cols=92 Identities=16% Similarity=0.263 Sum_probs=56.6
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHhcccCC---CeEEEEeCCC---------------------CCCHHHHHHHhhhc-
Q psy1371 150 GIPYRRGYLLYGPPGCGKSSFITALAGELEF---GICVLNLSER---------------------GLTDDRLNHLLSVA- 204 (244)
Q Consensus 150 ~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~---~~g~i~~~~~---------------------~~~~~~~~~~~~~~- 204 (244)
+++++++++|+||||||||+|+.+++..... ....++..+. +..+..++.....+
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 4889999999999999999999998765422 2333443321 01122233333333
Q ss_pred -CCCCceehhhHhhhhccc---Cc---Cccc-HHHHHHHHHHhhh
Q psy1371 205 -PQNSIILLEDIDAAFVTR---EE---SSQG-LEDIDAAFVTREE 241 (244)
Q Consensus 205 -~q~~~lf~deid~~~~~r---~~---~~~~-~~~~~~~~l~~~~ 241 (244)
..++++++|+++.+...+ +. +... .+++..++|+++.
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~ 1547 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA 1547 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHH
Confidence 357899999999887642 11 1122 3566677776654
No 234
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.60 E-value=3.1e-05 Score=62.09 Aligned_cols=29 Identities=24% Similarity=0.505 Sum_probs=24.9
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHhcccC
Q psy1371 151 IPYRRGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 151 ~~~~~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
...++-++|+|||||||||+++.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45566789999999999999999998764
No 235
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.60 E-value=1.7e-05 Score=69.49 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=28.3
Q ss_pred CCCCCCcceEEEcCCCCChhHHHHHHhcccCCC
Q psy1371 149 RGIPYRRGYLLYGPPGCGKSSFITALAGELEFG 181 (244)
Q Consensus 149 ~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~ 181 (244)
=|+++++-++|+||||||||||+..++......
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~ 88 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQKM 88 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 368888889999999999999999999876443
No 236
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.59 E-value=1.1e-05 Score=69.14 Aligned_cols=32 Identities=25% Similarity=0.294 Sum_probs=19.2
Q ss_pred eEEEcCCCCChhHHHHHHhcc-cCCCeEEEEeCC
Q psy1371 157 YLLYGPPGCGKSSFITALAGE-LEFGICVLNLSE 189 (244)
Q Consensus 157 i~l~Gp~GsGKTtl~~~la~~-~~~~~g~i~~~~ 189 (244)
++++||||+|||||+++|++. ..++.| +...+
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g 53 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLTDLYPERV-ISGAA 53 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC--------------
T ss_pred EEEECCCCCCHHHHHHHHhCCCccCCCC-cccCC
Confidence 599999999999999999987 666666 55444
No 237
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=97.57 E-value=8.3e-06 Score=76.26 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=23.4
Q ss_pred ceEEEcCCCCChhHHHHHHhcccCCC
Q psy1371 156 GYLLYGPPGCGKSSFITALAGELEFG 181 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~~~~ 181 (244)
.++|+||||||||+++++++...+..
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~ 354 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRA 354 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCE
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCc
Confidence 69999999999999999999987643
No 238
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.56 E-value=4.4e-05 Score=60.88 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=23.2
Q ss_pred cceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
+-++|.|||||||||+++.|++.++.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~ 44 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGY 44 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45899999999999999999988754
No 239
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.54 E-value=1.7e-05 Score=68.34 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=28.8
Q ss_pred ceEEEcCCCCChhHHHHHHhccc--------CCCeEEEEeCC
Q psy1371 156 GYLLYGPPGCGKSSFITALAGEL--------EFGICVLNLSE 189 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~--------~~~~g~i~~~~ 189 (244)
-++|.||+||||||+++.|++.. .++.|.+.+++
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg 47 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDD 47 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEE
T ss_pred EEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccH
Confidence 37899999999999999999986 56777777665
No 240
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.53 E-value=4.4e-05 Score=59.47 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=23.1
Q ss_pred ceEEEcCCCCChhHHHHHHhcccCCC
Q psy1371 156 GYLLYGPPGCGKSSFITALAGELEFG 181 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~~~~ 181 (244)
.+.|.|||||||||+++.|+..++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~ 31 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLV 31 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 47999999999999999999987653
No 241
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.53 E-value=4.7e-05 Score=60.87 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=19.8
Q ss_pred ceEEEcCCCCChhHHHHHHhc
Q psy1371 156 GYLLYGPPGCGKSSFITALAG 176 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~ 176 (244)
.++|.|||||||||+++.|++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999998
No 242
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.52 E-value=6.1e-05 Score=58.90 Aligned_cols=29 Identities=31% Similarity=0.446 Sum_probs=24.2
Q ss_pred CCCcceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 152 PYRRGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 152 ~~~~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
..++.++|.|||||||||+++.|+..++.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~ 37 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGL 37 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCC
Confidence 34456899999999999999999977654
No 243
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.49 E-value=3.9e-05 Score=62.68 Aligned_cols=30 Identities=40% Similarity=0.584 Sum_probs=24.8
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcc
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.-|+++++-++++||||+||||++..++..
T Consensus 17 ~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 17 HGGIPERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp TTSEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 446788888999999999999997766543
No 244
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.49 E-value=2.8e-05 Score=73.63 Aligned_cols=38 Identities=29% Similarity=0.311 Sum_probs=25.0
Q ss_pred hCCCCCCcceEEEcCCCCChhHHH---------------------HHHhcccCCCeEEE
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFI---------------------TALAGELEFGICVL 185 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~---------------------~~la~~~~~~~g~i 185 (244)
++.++.++-++|+||||||||||+ +.+++...++.+.+
T Consensus 38 sl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i 96 (670)
T 3ux8_A 38 DVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAI 96 (670)
T ss_dssp EEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEE
T ss_pred EEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccce
Confidence 777888888999999999999998 77777777764433
No 245
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.49 E-value=4.7e-05 Score=63.99 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=24.1
Q ss_pred CCCcceEEEcCCCCChhHHHHHHhcccC
Q psy1371 152 PYRRGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 152 ~~~~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
++..+++|+||||||||+++++|+..+.
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 4456799999999999999999998653
No 246
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.49 E-value=3.9e-05 Score=60.15 Aligned_cols=27 Identities=41% Similarity=0.765 Sum_probs=22.9
Q ss_pred CcceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
+..++|.|||||||||+++.|+..++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~ 30 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGF 30 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 345899999999999999999976653
No 247
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.49 E-value=5.2e-05 Score=60.46 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=20.8
Q ss_pred ceEEEcCCCCChhHHHHHHhcccC
Q psy1371 156 GYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
.++|.|||||||||+++.|++ ++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g 25 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LG 25 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TT
T ss_pred EEEEECCCCcCHHHHHHHHHH-CC
Confidence 479999999999999999999 54
No 248
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.47 E-value=8.1e-05 Score=58.17 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=22.6
Q ss_pred CcceEEEcCCCCChhHHHHHHhccc
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
+.-++|.|++||||||+++.|++.+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4558999999999999999999987
No 249
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.47 E-value=3.3e-05 Score=62.22 Aligned_cols=33 Identities=21% Similarity=0.106 Sum_probs=26.7
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHhcccCCCeE
Q psy1371 151 IPYRRGYLLYGPPGCGKSSFITALAGELEFGIC 183 (244)
Q Consensus 151 ~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g 183 (244)
.+.+.-+.|.|+|||||||+++.|++.+++..|
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g 54 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRR 54 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccC
Confidence 345566899999999999999999998864333
No 250
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.46 E-value=3.9e-05 Score=64.57 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=26.3
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHhcccC
Q psy1371 150 GIPYRRGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 150 ~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
+++.++-++|+||||||||||++.+++...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 677778899999999999999999997553
No 251
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.46 E-value=0.00011 Score=62.74 Aligned_cols=58 Identities=19% Similarity=0.084 Sum_probs=40.4
Q ss_pred HHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCC
Q psy1371 131 RILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSER 190 (244)
Q Consensus 131 ~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~ 190 (244)
...+++...+.... ..+.+..++.++++||+|+||||+++.|++.+.+..+.+.+.+.
T Consensus 77 ~~~~~l~~~~~~~~--~~i~~~~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 77 TVYEALKEALGGEA--RLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp HHHHHHHHHTTSSC--CCCCCCSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHCCCC--ceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 34566666664332 23344455668999999999999999999998766666665543
No 252
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.44 E-value=0.00036 Score=59.77 Aligned_cols=33 Identities=33% Similarity=0.308 Sum_probs=25.7
Q ss_pred cceEEEcCCCCChhHHHHHHhcccCCCeEEEEe
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELEFGICVLNL 187 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~ 187 (244)
+.++++||+|+|||+|++.++.........++.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~ 63 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDL 63 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEc
Confidence 367999999999999999999876544444443
No 253
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.44 E-value=9e-05 Score=65.19 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=21.5
Q ss_pred cceEE--EcCCCCChhHHHHHHhcccC
Q psy1371 155 RGYLL--YGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 155 ~gi~l--~Gp~GsGKTtl~~~la~~~~ 179 (244)
..++| +||+|+||||+++.++....
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~~~~~~ 77 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFTVKRVS 77 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence 45778 99999999999999997763
No 254
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.43 E-value=6.6e-05 Score=64.85 Aligned_cols=61 Identities=18% Similarity=0.208 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcChhh---hh--hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCC
Q psy1371 130 DRILTDIKQFVADPAW---YL--DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSER 190 (244)
Q Consensus 130 ~~~l~~i~~~~~~~~~---~~--~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~ 190 (244)
+.+.+.+...+..... .. ++....++.++++||+|+||||++..||+.+.+..+.+.+.+.
T Consensus 76 ~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 76 DALVESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp HHHHHHHHHHHHCSCC----CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHhCcccccccccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3344555555543321 01 3344556669999999999999999999988766666665543
No 255
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.43 E-value=7.6e-05 Score=59.19 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.9
Q ss_pred ceEEEcCCCCChhHHHHHHhccc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
.++++||+|+|||||++.+++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999864
No 256
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.42 E-value=0.00012 Score=64.90 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=30.2
Q ss_pred CCCcceEEEcCCCCChhHHHHHHhc------------ccCCCeEEEEeCC
Q psy1371 152 PYRRGYLLYGPPGCGKSSFITALAG------------ELEFGICVLNLSE 189 (244)
Q Consensus 152 ~~~~gi~l~Gp~GsGKTtl~~~la~------------~~~~~~g~i~~~~ 189 (244)
+.+..++|+|+||+|||||+++|++ ...|+.|.+.+.+
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 67 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence 3445589999999999999999999 3457778776653
No 257
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.42 E-value=7.2e-05 Score=57.47 Aligned_cols=24 Identities=42% Similarity=0.527 Sum_probs=20.4
Q ss_pred ceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 156 GYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
-++|.|||||||||+++.| ..++.
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~ 26 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGA 26 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTC
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCC
Confidence 3789999999999999999 55544
No 258
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.42 E-value=6.2e-05 Score=62.67 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=22.6
Q ss_pred ceEEEcCCCCChhHHHHHHhcccCCC
Q psy1371 156 GYLLYGPPGCGKSSFITALAGELEFG 181 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~~~~ 181 (244)
-++|.|||||||||+++.|++.++..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~ 28 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWP 28 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCe
Confidence 36899999999999999999877644
No 259
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.41 E-value=7.2e-05 Score=61.01 Aligned_cols=33 Identities=24% Similarity=0.491 Sum_probs=26.8
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
.-.+..++-+.|.|||||||+|.++.|+..++.
T Consensus 23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~ 55 (217)
T 3umf_A 23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHF 55 (217)
T ss_dssp -CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCC
T ss_pred chhccCCcEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 344555667889999999999999999998864
No 260
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.41 E-value=9e-05 Score=58.05 Aligned_cols=26 Identities=42% Similarity=0.570 Sum_probs=23.3
Q ss_pred ceEEEcCCCCChhHHHHHHhcccCCC
Q psy1371 156 GYLLYGPPGCGKSSFITALAGELEFG 181 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~~~~ 181 (244)
.++|.|+|||||||+++.|+..++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~ 29 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVG 29 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 48999999999999999999887654
No 261
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.40 E-value=6.9e-05 Score=58.14 Aligned_cols=22 Identities=32% Similarity=0.532 Sum_probs=20.0
Q ss_pred cceEEEcCCCCChhHHHHHHhc
Q psy1371 155 RGYLLYGPPGCGKSSFITALAG 176 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~ 176 (244)
.-+++.|||||||||+++.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3478999999999999999998
No 262
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.40 E-value=0.00012 Score=63.94 Aligned_cols=42 Identities=29% Similarity=0.399 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhcChhhhhhCCCCCCcc--eEEEcCCCCChhHHHHHHhcccCCC
Q psy1371 129 ADRILTDIKQFVADPAWYLDRGIPYRRG--YLLYGPPGCGKSSFITALAGELEFG 181 (244)
Q Consensus 129 ~~~~l~~i~~~~~~~~~~~~~~~~~~~g--i~l~Gp~GsGKTtl~~~la~~~~~~ 181 (244)
.+.+++.++. .++.++. ++|+|||||||||++++|++.++.+
T Consensus 8 ~~~il~~l~~-----------~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~ 51 (359)
T 2ga8_A 8 ADDVLQLLDN-----------RIEDNYRVCVILVGSPGSGKSTIAEELCQIINEK 51 (359)
T ss_dssp HHHHHHHHHH-----------TTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----------HhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 3556677743 3334433 8999999999999999999987543
No 263
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.39 E-value=5.6e-05 Score=59.28 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=22.3
Q ss_pred cceEEEcCCCCChhHHHHHHhcccC
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
.-+.|.|||||||||+++.|+..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999998765
No 264
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.39 E-value=3.1e-05 Score=71.71 Aligned_cols=39 Identities=26% Similarity=0.177 Sum_probs=31.2
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHhcccCCCeE-EEE-eCC
Q psy1371 151 IPYRRGYLLYGPPGCGKSSFITALAGELEFGIC-VLN-LSE 189 (244)
Q Consensus 151 ~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g-~i~-~~~ 189 (244)
+..+..++|+|||||||||++++|++.+.+..| .+. +++
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 445666899999999999999999999987765 443 444
No 265
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.38 E-value=9.3e-05 Score=58.31 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=23.4
Q ss_pred CcceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
+.-++|.|||||||||+++.|+..++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~ 35 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGY 35 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 345899999999999999999987754
No 266
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.38 E-value=6.2e-05 Score=61.57 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=23.0
Q ss_pred CCCcceEEEcCCCCChhHHHHHHhcc
Q psy1371 152 PYRRGYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 152 ~~~~gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
+.+.-++|.||+||||||++++|++.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44555899999999999999999997
No 267
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.37 E-value=0.00012 Score=58.38 Aligned_cols=27 Identities=41% Similarity=0.623 Sum_probs=23.5
Q ss_pred cceEEEcCCCCChhHHHHHHhcccCCC
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELEFG 181 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~~~ 181 (244)
..++|.|||||||||+++.|+..++..
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~ 47 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIP 47 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 348999999999999999999887654
No 268
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.37 E-value=0.00018 Score=57.13 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=22.7
Q ss_pred CcceEEEcCCCCChhHHHHHHhccc
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
+.-++|.||+||||||+++.|+..+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4558999999999999999999987
No 269
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.37 E-value=5.8e-05 Score=59.38 Aligned_cols=30 Identities=33% Similarity=0.333 Sum_probs=24.9
Q ss_pred CCCcceEEEcCCCCChhHHHHHHhcccCCC
Q psy1371 152 PYRRGYLLYGPPGCGKSSFITALAGELEFG 181 (244)
Q Consensus 152 ~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~ 181 (244)
..+.-+.|.|+|||||||+++.|+..+...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 344558999999999999999999887543
No 270
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.35 E-value=7.7e-05 Score=59.08 Aligned_cols=24 Identities=25% Similarity=0.606 Sum_probs=21.9
Q ss_pred eEEEcCCCCChhHHHHHHhcccCC
Q psy1371 157 YLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 157 i~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
++|.|++||||||+++.|+..++.
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEECCCccCHHHHHHHHHHhcCC
Confidence 689999999999999999997764
No 271
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.34 E-value=0.00012 Score=57.40 Aligned_cols=26 Identities=19% Similarity=0.471 Sum_probs=22.9
Q ss_pred cceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
+.++|.|+|||||||+++.|+..++.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~ 32 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGW 32 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45899999999999999999987754
No 272
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.34 E-value=0.00011 Score=59.08 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=22.1
Q ss_pred eEEEcCCCCChhHHHHHHhcccCCC
Q psy1371 157 YLLYGPPGCGKSSFITALAGELEFG 181 (244)
Q Consensus 157 i~l~Gp~GsGKTtl~~~la~~~~~~ 181 (244)
++|.|||||||||+++.|+..++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~ 27 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIP 27 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 6899999999999999999877643
No 273
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.33 E-value=0.00012 Score=56.42 Aligned_cols=28 Identities=32% Similarity=0.445 Sum_probs=24.3
Q ss_pred cceEEEcCCCCChhHHHHHHhcccCCCe
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELEFGI 182 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~~~~ 182 (244)
+.++|.|++||||||+++.|+..++.+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~ 35 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEV 35 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4579999999999999999999877654
No 274
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.33 E-value=7.2e-05 Score=60.19 Aligned_cols=19 Identities=32% Similarity=0.583 Sum_probs=16.6
Q ss_pred ceEEEcCCCCChhHHHHHH
Q psy1371 156 GYLLYGPPGCGKSSFITAL 174 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~l 174 (244)
.+++.|+||||||+++..+
T Consensus 7 i~l~tG~pGsGKT~~a~~~ 25 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSM 25 (199)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHH
Confidence 4689999999999998775
No 275
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.33 E-value=0.00011 Score=59.03 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=22.2
Q ss_pred eEEEcCCCCChhHHHHHHhcccCCC
Q psy1371 157 YLLYGPPGCGKSSFITALAGELEFG 181 (244)
Q Consensus 157 i~l~Gp~GsGKTtl~~~la~~~~~~ 181 (244)
++|.|||||||||+++.|+..++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~ 27 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIP 27 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 6899999999999999999877654
No 276
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.33 E-value=8.4e-05 Score=58.35 Aligned_cols=26 Identities=19% Similarity=0.418 Sum_probs=22.7
Q ss_pred cceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
.-++|.|+|||||||+++.|+..++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~ 29 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGY 29 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45899999999999999999987654
No 277
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.33 E-value=9.3e-05 Score=57.73 Aligned_cols=27 Identities=26% Similarity=0.267 Sum_probs=19.5
Q ss_pred cceEEEcCCCCChhHHHHHHhcccCCC
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELEFG 181 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~~~ 181 (244)
.-+.|.|+|||||||+++.|+..++..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~ 32 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGS 32 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 458999999999999999999877654
No 278
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.32 E-value=5.4e-05 Score=74.16 Aligned_cols=48 Identities=29% Similarity=0.467 Sum_probs=37.2
Q ss_pred CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhc
Q psy1371 117 RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAG 176 (244)
Q Consensus 117 ~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~ 176 (244)
+...++++.|+. ..+++++ ++.++.|+.++|+||||||||||+|+|++
T Consensus 436 L~~~~ls~~yg~-~~iL~~v-----------sl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 436 LCNCEFSLAYGA-KILLNKT-----------QLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEEEEEEETT-EEEEEEE-----------EEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEeeEEEEECC-EEeEecc-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 334466666754 2356666 77788888899999999999999999994
No 279
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.32 E-value=0.00019 Score=56.56 Aligned_cols=22 Identities=41% Similarity=0.421 Sum_probs=20.7
Q ss_pred eEEEcCCCCChhHHHHHHhccc
Q psy1371 157 YLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 157 i~l~Gp~GsGKTtl~~~la~~~ 178 (244)
++|.||+||||||+++.|+..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999887
No 280
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.31 E-value=9.2e-05 Score=58.49 Aligned_cols=27 Identities=26% Similarity=0.457 Sum_probs=23.4
Q ss_pred CcceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
+.-++|.|||||||||+++.|+..++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~ 38 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGF 38 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 345899999999999999999988764
No 281
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.31 E-value=9.9e-05 Score=59.76 Aligned_cols=27 Identities=15% Similarity=0.327 Sum_probs=23.5
Q ss_pred CcceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
+..+.|.|||||||||+++.|+..++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~ 31 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQL 31 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 345899999999999999999987764
No 282
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.31 E-value=8.4e-05 Score=58.26 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.6
Q ss_pred ceEEEcCCCCChhHHHHHHhcccC
Q psy1371 156 GYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
-+.|.|||||||||+++.|+..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999998765
No 283
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.30 E-value=0.0001 Score=58.76 Aligned_cols=26 Identities=35% Similarity=0.270 Sum_probs=23.1
Q ss_pred cceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
.-++|.|||||||||+++.|+..++.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 45899999999999999999987765
No 284
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.29 E-value=0.00012 Score=67.35 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=29.8
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccCCC
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELEFG 181 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~ 181 (244)
..++++++.++|.||||||||||++++++...+.
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~ 308 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN 308 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 4478888889999999999999999999987654
No 285
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.29 E-value=0.00013 Score=58.88 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=23.1
Q ss_pred cceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
..++|.|||||||||+++.|+..++.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~ 30 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHA 30 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 45899999999999999999988764
No 286
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.28 E-value=0.00013 Score=59.35 Aligned_cols=27 Identities=22% Similarity=0.485 Sum_probs=23.4
Q ss_pred CcceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
+..++|.|||||||||+++.|+..++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~ 33 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFEL 33 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 355899999999999999999987754
No 287
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.27 E-value=0.00013 Score=56.29 Aligned_cols=26 Identities=27% Similarity=0.539 Sum_probs=22.9
Q ss_pred ceEEEcCCCCChhHHHHHHhcccCCC
Q psy1371 156 GYLLYGPPGCGKSSFITALAGELEFG 181 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~~~~ 181 (244)
.++|.|+|||||||+++.|+..++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~ 29 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYE 29 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 47999999999999999999877643
No 288
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.27 E-value=0.00025 Score=55.62 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=20.7
Q ss_pred eEEEcCCCCChhHHHHHHhccc
Q psy1371 157 YLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 157 i~l~Gp~GsGKTtl~~~la~~~ 178 (244)
++|.|++||||||+++.|+..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999876
No 289
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.26 E-value=0.00014 Score=63.21 Aligned_cols=32 Identities=28% Similarity=0.258 Sum_probs=26.2
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcccC
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
.+....+..++++||||+||||+++.|++.+.
T Consensus 50 ~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 50 MPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp GGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 44455566689999999999999999998764
No 290
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.25 E-value=0.00033 Score=68.51 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=20.7
Q ss_pred CCCCcceEEEcCCCCChhHHHHHH
Q psy1371 151 IPYRRGYLLYGPPGCGKSSFITAL 174 (244)
Q Consensus 151 ~~~~~gi~l~Gp~GsGKTtl~~~l 174 (244)
++.++-++|.||||+||||++|++
T Consensus 659 ~~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 659 KDKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TTTBCEEEEECCTTSSHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHH
Confidence 344556999999999999999999
No 291
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.24 E-value=0.00012 Score=62.36 Aligned_cols=28 Identities=25% Similarity=0.207 Sum_probs=24.5
Q ss_pred CCcceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 153 YRRGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 153 ~~~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
.+.-++|.||+||||||+++.|++.+.+
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3445899999999999999999999875
No 292
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.24 E-value=0.00014 Score=58.73 Aligned_cols=25 Identities=40% Similarity=0.670 Sum_probs=22.4
Q ss_pred eEEEcCCCCChhHHHHHHhcccCCC
Q psy1371 157 YLLYGPPGCGKSSFITALAGELEFG 181 (244)
Q Consensus 157 i~l~Gp~GsGKTtl~~~la~~~~~~ 181 (244)
+.|.|||||||+|.++.|+..++..
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~ 27 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFV 27 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCe
Confidence 6789999999999999999988653
No 293
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.22 E-value=0.00019 Score=55.14 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=22.4
Q ss_pred eEEEcCCCCChhHHHHHHhcccCCC
Q psy1371 157 YLLYGPPGCGKSSFITALAGELEFG 181 (244)
Q Consensus 157 i~l~Gp~GsGKTtl~~~la~~~~~~ 181 (244)
++|.|++||||||+++.|+..++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~~~ 27 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLNIP 27 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC
Confidence 6899999999999999999977654
No 294
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.22 E-value=0.00017 Score=59.53 Aligned_cols=28 Identities=25% Similarity=0.442 Sum_probs=23.9
Q ss_pred CCcceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 153 YRRGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 153 ~~~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
.+..++|.|||||||||+++.|+..++.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~ 55 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCY 55 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3456899999999999999999987754
No 295
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.21 E-value=9.1e-05 Score=63.22 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=24.8
Q ss_pred CCcceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 153 YRRGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 153 ~~~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
.++.++++||+|+||||+++.|++.+.+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4556999999999999999999998865
No 296
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.21 E-value=0.00022 Score=56.72 Aligned_cols=24 Identities=33% Similarity=0.617 Sum_probs=20.7
Q ss_pred ceEEEcCCCCChhHHHHHHhcccC
Q psy1371 156 GYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
-+.|.||||+|||||++.|....+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 378999999999999999986653
No 297
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.21 E-value=0.00038 Score=59.89 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=20.2
Q ss_pred ceEEEcCCCCChhHHHHHHhccc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
-.+|+||||+||||++.+|...+
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHHTS
T ss_pred cEEEECCCCCcHHHHHHHHHHHh
Confidence 47899999999999999998543
No 298
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.21 E-value=0.00015 Score=57.83 Aligned_cols=26 Identities=23% Similarity=0.174 Sum_probs=22.6
Q ss_pred CcceEEEcCCCCChhHHHHHHhcccC
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
+.-++|.|++||||||+++.|+..++
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45589999999999999999998654
No 299
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.20 E-value=0.00013 Score=65.17 Aligned_cols=30 Identities=27% Similarity=0.312 Sum_probs=25.8
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhcc
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
++.++.+.-++|+||||+|||||+++|++.
T Consensus 151 ~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 151 RLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred eeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 455556666999999999999999999997
No 300
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.19 E-value=0.00018 Score=59.22 Aligned_cols=26 Identities=38% Similarity=0.397 Sum_probs=22.8
Q ss_pred cceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
..++|.|||||||||+++.|+..++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~ 35 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGA 35 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35899999999999999999987754
No 301
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.19 E-value=0.00011 Score=56.23 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=18.8
Q ss_pred eEEEcCCCCChhHHHHHHhcc
Q psy1371 157 YLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 157 i~l~Gp~GsGKTtl~~~la~~ 177 (244)
.+|+||||+||||++.+|.-.
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999743
No 302
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.19 E-value=0.00023 Score=56.53 Aligned_cols=26 Identities=27% Similarity=0.510 Sum_probs=22.5
Q ss_pred cceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
+-++|.||+||||||+++.|+..++.
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~ 41 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSF 41 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 34899999999999999999987654
No 303
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.18 E-value=0.00018 Score=58.21 Aligned_cols=26 Identities=27% Similarity=0.514 Sum_probs=23.0
Q ss_pred cceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
..++|.|||||||||+++.|+..++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~ 31 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGL 31 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCc
Confidence 34899999999999999999988764
No 304
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.17 E-value=0.00016 Score=57.73 Aligned_cols=27 Identities=26% Similarity=0.138 Sum_probs=22.9
Q ss_pred CCcceEEEcCCCCChhHHHHHHhcccC
Q psy1371 153 YRRGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 153 ~~~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
.+.-++|.|++||||||+++.|+..++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345589999999999999999997653
No 305
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.16 E-value=0.00041 Score=62.11 Aligned_cols=58 Identities=19% Similarity=0.086 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCC
Q psy1371 130 DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE 189 (244)
Q Consensus 130 ~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~ 189 (244)
+.+.+++...+.... ..+.+..++.++++||+|+||||++..|++.+....+.+.+.+
T Consensus 76 ~~v~~~L~~~~~~~~--~~i~l~~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd 133 (425)
T 2ffh_A 76 ATVYEALKEALGGEA--RLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (425)
T ss_dssp HHHHHHHHHHTTSSC--CCCCCCSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HHHHHHHHHHhCCCc--ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEee
Confidence 345566666665432 2344444566899999999999999999999876655555544
No 306
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.15 E-value=0.00028 Score=55.80 Aligned_cols=23 Identities=26% Similarity=0.153 Sum_probs=21.0
Q ss_pred cceEEEcCCCCChhHHHHHHhcc
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
..++|.|++||||||+++.|+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 34899999999999999999987
No 307
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.14 E-value=0.0017 Score=56.33 Aligned_cols=28 Identities=21% Similarity=0.175 Sum_probs=25.5
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHhcc
Q psy1371 150 GIPYRRGYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 150 ~~~~~~gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
|++.++-+.|+||||+|||+++..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6888888999999999999999999875
No 308
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.14 E-value=0.00023 Score=58.35 Aligned_cols=28 Identities=25% Similarity=0.314 Sum_probs=24.5
Q ss_pred CCcceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 153 YRRGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 153 ~~~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
.+.-+.|.|||||||||+++.|+..+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4455899999999999999999998875
No 309
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.12 E-value=0.00039 Score=55.09 Aligned_cols=21 Identities=19% Similarity=0.437 Sum_probs=19.6
Q ss_pred ceEEEcCCCCChhHHHHHHhc
Q psy1371 156 GYLLYGPPGCGKSSFITALAG 176 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~ 176 (244)
.++++|++|+|||||++.+.+
T Consensus 27 ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 389999999999999999986
No 310
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.12 E-value=0.00024 Score=57.13 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=22.2
Q ss_pred eEEEcCCCCChhHHHHHHhcccCCC
Q psy1371 157 YLLYGPPGCGKSSFITALAGELEFG 181 (244)
Q Consensus 157 i~l~Gp~GsGKTtl~~~la~~~~~~ 181 (244)
++|.|||||||||+++.|+..++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~ 27 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIP 27 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCe
Confidence 6899999999999999999877643
No 311
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.12 E-value=0.00026 Score=57.96 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=23.8
Q ss_pred CCCcceEEEcCCCCChhHHHHHHhcccC
Q psy1371 152 PYRRGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 152 ~~~~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
+.+..++|.||+||||||+++.|++.++
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3445589999999999999999998665
No 312
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.12 E-value=0.00027 Score=57.77 Aligned_cols=26 Identities=35% Similarity=0.549 Sum_probs=23.2
Q ss_pred cceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
..+.|.|+|||||||+++.|+..++.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~ 42 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCV 42 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34899999999999999999988764
No 313
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.11 E-value=7.6e-05 Score=59.74 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=21.5
Q ss_pred eEEEcCCCCChhHHHHHHhcccCC
Q psy1371 157 YLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 157 i~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
++|.||+||||||+++.|+..+..
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh
Confidence 689999999999999999987753
No 314
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.11 E-value=0.00027 Score=56.18 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=23.0
Q ss_pred ceEEEcCCCCChhHHHHHHhcccCCC
Q psy1371 156 GYLLYGPPGCGKSSFITALAGELEFG 181 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~~~~ 181 (244)
.++|.||+||||||+++.|+..++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~ 29 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVP 29 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCc
Confidence 57999999999999999999987643
No 315
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.09 E-value=0.00014 Score=63.45 Aligned_cols=28 Identities=39% Similarity=0.492 Sum_probs=23.3
Q ss_pred CcceEEEcCCCCChhHHHHHHhcccCCC
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAGELEFG 181 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~~~~~~ 181 (244)
+..++|+||||+|||||+++|++.+.+.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~ 101 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTER 101 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhc
Confidence 3448999999999999999999876443
No 316
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.09 E-value=0.0002 Score=64.04 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=25.2
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHhcccCCC
Q psy1371 151 IPYRRGYLLYGPPGCGKSSFITALAGELEFG 181 (244)
Q Consensus 151 ~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~ 181 (244)
++.+.-.+|+||||+||||++++|++.+.+.
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 3344558999999999999999999887654
No 317
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.07 E-value=9.2e-05 Score=70.09 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=23.4
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHh
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALA 175 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la 175 (244)
++.++.++.++|+||||||||||++++.
T Consensus 342 sl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 342 SVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred eeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 4566677779999999999999998654
No 318
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.05 E-value=0.00015 Score=63.63 Aligned_cols=20 Identities=40% Similarity=0.627 Sum_probs=18.5
Q ss_pred eEEEcCCCCChhHHHHHHhc
Q psy1371 157 YLLYGPPGCGKSSFITALAG 176 (244)
Q Consensus 157 i~l~Gp~GsGKTtl~~~la~ 176 (244)
.+|+||||+||||++.+|+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~~ 45 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAISF 45 (365)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999983
No 319
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.04 E-value=0.00037 Score=56.10 Aligned_cols=22 Identities=36% Similarity=0.347 Sum_probs=20.2
Q ss_pred cceEEEcCCCCChhHHHHHHhc
Q psy1371 155 RGYLLYGPPGCGKSSFITALAG 176 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~ 176 (244)
.-++|.|++||||||+++.|+.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3489999999999999999998
No 320
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.04 E-value=0.0012 Score=56.68 Aligned_cols=29 Identities=28% Similarity=0.426 Sum_probs=25.9
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHhccc
Q psy1371 150 GIPYRRGYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 150 ~~~~~~gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
|++.++-+.|+||||+|||+++..++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 67888889999999999999999998754
No 321
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.04 E-value=0.00026 Score=63.35 Aligned_cols=46 Identities=15% Similarity=0.106 Sum_probs=29.9
Q ss_pred CCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhcccC
Q psy1371 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 116 ~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
.+.++++...|+.. .+++++ ++. ++|+||||+|||||+++|++...
T Consensus 11 ~l~~~~l~~~y~~~-~vl~~v-----------sf~------I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 11 YVGFANLPNQVYRK-SVKRGF-----------EFT------LMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp ----CCCCCCTTTT-TCC-CC-----------CEE------EEEECCTTSSHHHHHHHHTTCCC
T ss_pred cEEEEecceeECCE-EEecCC-----------CEE------EEEECCCCCcHHHHHHHHhCCCC
Confidence 35677777776532 233333 222 59999999999999999999865
No 322
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.04 E-value=0.0003 Score=57.11 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=21.6
Q ss_pred eEEEcCCCCChhHHHHHHhcccCC
Q psy1371 157 YLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 157 i~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
++|.|||||||||+++.|+..++.
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~ 26 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSL 26 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 689999999999999999987753
No 323
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.02 E-value=0.00016 Score=63.37 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=21.4
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHhc
Q psy1371 150 GIPYRRGYLLYGPPGCGKSSFITALAG 176 (244)
Q Consensus 150 ~~~~~~gi~l~Gp~GsGKTtl~~~la~ 176 (244)
.++++ -.+|+||||+||||++++|+.
T Consensus 23 ~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 23 NFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp ECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred EEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 33333 478999999999999999996
No 324
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.98 E-value=0.00034 Score=53.58 Aligned_cols=22 Identities=45% Similarity=0.720 Sum_probs=20.3
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|+||+|||||++.+++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999984
No 325
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.97 E-value=0.0011 Score=58.04 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.2
Q ss_pred eEEEcCCCCChhHHHHHHhcccC
Q psy1371 157 YLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 157 i~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
++|+|+||+|||||++++++...
T Consensus 182 V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 182 IGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp EEEECBTTSSHHHHHHHHHCC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCc
Confidence 89999999999999999998754
No 326
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.97 E-value=0.00036 Score=54.86 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=27.1
Q ss_pred cceEEEcCCCCChhHHHHHHhcccC---CCeEEEEeCC
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELE---FGICVLNLSE 189 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~---~~~g~i~~~~ 189 (244)
+.+++.||+|+||||+++.|.+.+. ...+.+..+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 4579999999999999999998753 2356666544
No 327
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.96 E-value=0.00032 Score=67.62 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=22.7
Q ss_pred CCCcceEEEcCCCCChhHHHHHHhcc
Q psy1371 152 PYRRGYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 152 ~~~~gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
+.++.++|.||||+||||++|++++.
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 34556999999999999999999975
No 328
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.96 E-value=0.00029 Score=61.49 Aligned_cols=30 Identities=27% Similarity=0.501 Sum_probs=26.2
Q ss_pred CCCCCCcceEEEcCCCCChhHHHHHHhccc
Q psy1371 149 RGIPYRRGYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 149 ~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
-|++.++-++|+||||+|||||+..++...
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478888889999999999999999888654
No 329
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.95 E-value=0.00044 Score=55.58 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=22.3
Q ss_pred CcceEEEcCCCCChhHHHHHHhccc
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
+++++|.||||+|||||+..|+...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 5679999999999999999999754
No 330
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.94 E-value=0.00043 Score=59.02 Aligned_cols=57 Identities=14% Similarity=0.042 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhcChhhh-hhCCCCCCcceEEEcCCCCChhHHHHHHhcccCCCeEEEEe
Q psy1371 130 DRILTDIKQFVADPAWY-LDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNL 187 (244)
Q Consensus 130 ~~~l~~i~~~~~~~~~~-~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~ 187 (244)
+.+.+++...+.....- -++..+ ++.++++||+|+||||++..|++.+....+.+.+
T Consensus 74 ~~~~~~l~~~~~~~~~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l 131 (297)
T 1j8m_F 74 KIVYDELSNLFGGDKEPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGL 131 (297)
T ss_dssp HHHHHHHHHHTTCSCCCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHhccccccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 44566776666543210 023333 5568999999999999999999887554444443
No 331
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.94 E-value=0.00034 Score=57.89 Aligned_cols=26 Identities=23% Similarity=0.079 Sum_probs=22.7
Q ss_pred cceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
..++|.||+||||||+++.|+..++.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 34899999999999999999987664
No 332
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.93 E-value=0.00038 Score=53.88 Aligned_cols=25 Identities=40% Similarity=0.590 Sum_probs=21.7
Q ss_pred CcceEEEcCCCCChhHHHHHHhccc
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
+..++++|+||+|||||++.+++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458999999999999999999853
No 333
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.93 E-value=0.00041 Score=59.85 Aligned_cols=26 Identities=35% Similarity=0.565 Sum_probs=23.1
Q ss_pred cceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
+.++|+||+||||||+++.|+..++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~ 31 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPC 31 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 45899999999999999999998764
No 334
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.91 E-value=0.00045 Score=55.08 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=21.6
Q ss_pred eEEEcCCCCChhHHHHHHhcccCC
Q psy1371 157 YLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 157 i~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
++|.|++||||||+++.++..++.
T Consensus 15 IgltG~~GSGKSTva~~L~~~lg~ 38 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKYGA 38 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHhcCC
Confidence 799999999999999999987653
No 335
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.91 E-value=0.00042 Score=57.68 Aligned_cols=23 Identities=43% Similarity=0.547 Sum_probs=20.8
Q ss_pred cceEEEcCCCCChhHHHHHHhcc
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.-+.|.|+|||||||+++.|+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Confidence 34789999999999999999986
No 336
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.89 E-value=0.00043 Score=54.03 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=20.2
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|+||+|||||++.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3799999999999999999985
No 337
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.87 E-value=0.0008 Score=52.84 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=19.7
Q ss_pred ceEEEcCCCCChhHHHHHHhc
Q psy1371 156 GYLLYGPPGCGKSSFITALAG 176 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~ 176 (244)
.++++|++|+|||||++.+.+
T Consensus 25 ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999997
No 338
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.86 E-value=0.00062 Score=61.38 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=27.0
Q ss_pred CCCCCCcceEEEcCCCCChhHHHHHHhcccC
Q psy1371 149 RGIPYRRGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 149 ~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
.|++++.-+++.||||+||||++..++....
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3688888899999999999999999988654
No 339
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.85 E-value=0.0003 Score=68.70 Aligned_cols=28 Identities=32% Similarity=0.347 Sum_probs=23.4
Q ss_pred CCCCCCcceEEEcCCCCChhHHHHHHhc
Q psy1371 149 RGIPYRRGYLLYGPPGCGKSSFITALAG 176 (244)
Q Consensus 149 ~~~~~~~gi~l~Gp~GsGKTtl~~~la~ 176 (244)
+.++.++.++|.||||+||||++|++++
T Consensus 668 l~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 668 LSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp ECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 3455566799999999999999999874
No 340
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.85 E-value=0.00083 Score=60.58 Aligned_cols=55 Identities=11% Similarity=0.248 Sum_probs=31.8
Q ss_pred CCCCCCCCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHHHHhccc
Q psy1371 111 GHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 111 ~~~~~~~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
..++++.+++++ +.+. ..+++.+...+..++ ..+++.||+|||||++++.++..+
T Consensus 15 ~~~~~p~~~~~L--n~~Q-~~av~~~~~~i~~~~----------~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 15 VPRGSHMTFDDL--TEGQ-KNAFNIVMKAIKEKK----------HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp ------CCSSCC--CHHH-HHHHHHHHHHHHSSS----------CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccccCCCccccC--CHHH-HHHHHHHHHHHhcCC----------CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 456677778776 3333 234454433333211 147999999999999999988765
No 341
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.84 E-value=0.00034 Score=56.22 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=18.6
Q ss_pred eEEEcCCCCChhHHHHHHhcc
Q psy1371 157 YLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 157 i~l~Gp~GsGKTtl~~~la~~ 177 (244)
.+|+||||+||||++.+|.-.
T Consensus 26 ~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 689999999999999998743
No 342
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.83 E-value=0.0012 Score=58.60 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=21.5
Q ss_pred CCcceEEEcCCCCChhHHHHHHhcc
Q psy1371 153 YRRGYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 153 ~~~gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.+..++|+|+||+|||||+++|++.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3455899999999999999999987
No 343
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.80 E-value=0.0005 Score=53.97 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.3
Q ss_pred CCcceEEEcCCCCChhHHHHHHhc
Q psy1371 153 YRRGYLLYGPPGCGKSSFITALAG 176 (244)
Q Consensus 153 ~~~gi~l~Gp~GsGKTtl~~~la~ 176 (244)
.++|++|.||||+||||++..+..
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 367899999999999999998875
No 344
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.80 E-value=0.00033 Score=60.76 Aligned_cols=19 Identities=42% Similarity=0.700 Sum_probs=17.6
Q ss_pred eEEEcCCCCChhHHHHHHh
Q psy1371 157 YLLYGPPGCGKSSFITALA 175 (244)
Q Consensus 157 i~l~Gp~GsGKTtl~~~la 175 (244)
.+|+||||+||||++.+|+
T Consensus 26 ~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999985
No 345
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.80 E-value=0.00046 Score=66.19 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=22.5
Q ss_pred CcceEEEcCCCCChhHHHHHHhccc
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
++.++|.||||+||||++|++++..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 5669999999999999999999864
No 346
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.78 E-value=0.00066 Score=60.89 Aligned_cols=28 Identities=25% Similarity=0.138 Sum_probs=23.7
Q ss_pred CcceEEEcCCCCChhHHHHHHhcccCCC
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAGELEFG 181 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~~~~~~ 181 (244)
++-++++||+|+||||++..|+..+...
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4558999999999999999999877543
No 347
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.78 E-value=0.00061 Score=52.91 Aligned_cols=22 Identities=45% Similarity=0.720 Sum_probs=20.3
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999983
No 348
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.0014 Score=51.10 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=21.7
Q ss_pred CcceEEEcCCCCChhHHHHHHhccc
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
...++++|++|+|||||++.+.+..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458999999999999999999754
No 349
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.74 E-value=0.00062 Score=55.46 Aligned_cols=26 Identities=35% Similarity=0.603 Sum_probs=23.0
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHh
Q psy1371 150 GIPYRRGYLLYGPPGCGKSSFITALA 175 (244)
Q Consensus 150 ~~~~~~gi~l~Gp~GsGKTtl~~~la 175 (244)
|+++++-+.+.|+||+|||+++..++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 67888889999999999999987765
No 350
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.71 E-value=0.00091 Score=53.69 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=22.7
Q ss_pred cceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
..++|.|++||||||+++.|+..++.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~ 29 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSM 29 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 34799999999999999999987653
No 351
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.71 E-value=0.00069 Score=57.21 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.4
Q ss_pred cceEEEcCCCCChhHHHHHHhcc
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
+-+.+.|||||||||+++.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 34789999999999999999974
No 352
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.71 E-value=0.00073 Score=55.49 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=23.0
Q ss_pred ceEEEcCCCCChhHHHHHHhcccCCC
Q psy1371 156 GYLLYGPPGCGKSSFITALAGELEFG 181 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~~~~ 181 (244)
.++|.|||||||||+++.|+..++..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~ 35 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIP 35 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCC
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCC
Confidence 46999999999999999999988654
No 353
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.70 E-value=0.00056 Score=58.09 Aligned_cols=34 Identities=12% Similarity=0.131 Sum_probs=23.1
Q ss_pred ceEEEcCCCCChhHHHHHHhcccC---CCeEEEEeCC
Q psy1371 156 GYLLYGPPGCGKSSFITALAGELE---FGICVLNLSE 189 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~~---~~~g~i~~~~ 189 (244)
-++|.||+||||||+++.|+..++ .....++.++
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~ 43 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDA 43 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecch
Confidence 489999999999999999998654 2244555554
No 354
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.69 E-value=0.0012 Score=59.18 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=21.3
Q ss_pred ceEEEcCCCCChhHHHHHHhccc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
.++|+|+||+|||||++++++..
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999874
No 355
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.67 E-value=0.0012 Score=57.37 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=22.4
Q ss_pred cceEEEcCCCCChhHHHHHHhcccC
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
+-++|.||+||||||+++.|+..++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3579999999999999999998776
No 356
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.66 E-value=0.00033 Score=67.81 Aligned_cols=31 Identities=29% Similarity=0.428 Sum_probs=25.3
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHH-Hhccc
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITA-LAGEL 178 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~-la~~~ 178 (244)
++.++.++-++++|+||||||||++. |++.+
T Consensus 517 sl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l 548 (842)
T 2vf7_A 517 DVRFPLGVMTSVTGVSGSGKSTLVSQALVDAL 548 (842)
T ss_dssp EEEEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred eEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence 45677777799999999999999996 66543
No 357
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.66 E-value=0.00085 Score=56.59 Aligned_cols=21 Identities=38% Similarity=0.357 Sum_probs=19.4
Q ss_pred ceEEEcCCCCChhHHHHHHhc
Q psy1371 156 GYLLYGPPGCGKSSFITALAG 176 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~ 176 (244)
-++|.|++||||||+++.|+.
T Consensus 77 iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999994
No 358
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=96.65 E-value=0.0014 Score=57.43 Aligned_cols=64 Identities=13% Similarity=0.185 Sum_probs=43.9
Q ss_pred ceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHHH-HHHhhhcC-----------------CCCceehhhHhh
Q psy1371 156 GYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRL-NHLLSVAP-----------------QNSIILLEDIDA 217 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~~-~~~~~~~~-----------------q~~~lf~deid~ 217 (244)
.+++.|++|+||+++++++..........+.++....++..+ .+.|+... +...||+|||+.
T Consensus 154 ~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~ 233 (368)
T 3dzd_A 154 PVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGE 233 (368)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHTTTSEEEEETGGG
T ss_pred hheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccccCChHhhcCCCeEEecChhh
Confidence 379999999999999999998766544466666644443322 23444321 345799999987
Q ss_pred hh
Q psy1371 218 AF 219 (244)
Q Consensus 218 ~~ 219 (244)
+.
T Consensus 234 l~ 235 (368)
T 3dzd_A 234 LD 235 (368)
T ss_dssp SC
T ss_pred CC
Confidence 74
No 359
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.65 E-value=0.00076 Score=52.73 Aligned_cols=33 Identities=9% Similarity=0.197 Sum_probs=25.3
Q ss_pred ceEEEcCCCCChhHHHHHHhcccC---CCeEEEEeC
Q psy1371 156 GYLLYGPPGCGKSSFITALAGELE---FGICVLNLS 188 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~~---~~~g~i~~~ 188 (244)
.+++.|++|+||||++..|++.+. ...+.+..+
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~ 41 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH 41 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeC
Confidence 478999999999999999998753 234555543
No 360
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.64 E-value=0.0012 Score=58.78 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=21.8
Q ss_pred cceEEEcCCCCChhHHHHHHhcccC
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
+-++++|||||||||+++.|+..++
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~~ 283 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSAG 283 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGGT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4488999999999999999998764
No 361
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.63 E-value=0.00087 Score=58.11 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=22.6
Q ss_pred cceEEEcCCCCChhHHHHHHhcccC
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
+-+.|+||+|||||||+..||..++
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3489999999999999999999876
No 362
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.61 E-value=0.0015 Score=55.93 Aligned_cols=29 Identities=28% Similarity=0.337 Sum_probs=25.4
Q ss_pred CCCCCCcceEEEcCCCCChhHHHHHHhcc
Q psy1371 149 RGIPYRRGYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 149 ~~~~~~~gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
-|++++.-++|.|+||+||||++..++..
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 46888888999999999999999888854
No 363
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.59 E-value=0.00082 Score=66.46 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.1
Q ss_pred CcceEEEcCCCCChhHHHHHHhccc
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
++.++|.||||+||||++|++ |+.
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~ 812 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLL 812 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHH
Confidence 566999999999999999999 653
No 364
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.58 E-value=0.00093 Score=55.80 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=21.4
Q ss_pred cceEEEcCCCCChhHHHHHHhccc
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
..++++|+||+|||||++++++..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999999864
No 365
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.56 E-value=0.001 Score=50.07 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.4
Q ss_pred ceEEEcCCCCChhHHHHHHhccc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
.++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999998753
No 366
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.55 E-value=0.0012 Score=50.43 Aligned_cols=23 Identities=39% Similarity=0.716 Sum_probs=20.1
Q ss_pred ceEEEcCCCCChhHHHHHHhccc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
.++++|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47999999999999999998753
No 367
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.54 E-value=0.00095 Score=58.38 Aligned_cols=30 Identities=27% Similarity=0.544 Sum_probs=26.0
Q ss_pred CCCCCCcceEEEcCCCCChhHHHHHHhccc
Q psy1371 149 RGIPYRRGYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 149 ~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
-|++.++-++|+||||+|||||+..++...
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 368888889999999999999998888654
No 368
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.53 E-value=0.00086 Score=57.45 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=25.4
Q ss_pred CCCCCCcceEEEcCCCCChhHHHHHHhcc
Q psy1371 149 RGIPYRRGYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 149 ~~~~~~~gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
-|+++++-+.|+||||+|||+++..++..
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36788888999999999999999988854
No 369
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.52 E-value=0.0014 Score=53.53 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.4
Q ss_pred ceEEEcCCCCChhHHHHHHhcccC
Q psy1371 156 GYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
.++|+|++|+|||||+++|.+...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 489999999999999999998543
No 370
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.51 E-value=0.0011 Score=50.04 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.8
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 371
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.51 E-value=0.0011 Score=50.30 Aligned_cols=23 Identities=39% Similarity=0.647 Sum_probs=19.8
Q ss_pred ceEEEcCCCCChhHHHHHHhccc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
.++++|++|+|||||++.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 37999999999999999998643
No 372
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.49 E-value=0.0012 Score=49.63 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.5
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999998753
No 373
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.48 E-value=0.0028 Score=56.87 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=22.3
Q ss_pred cceEEEcCCCCChhHHHHHHhcccC
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
+.++++||+|+||||++..|++.+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4699999999999999999998763
No 374
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.48 E-value=0.0012 Score=56.22 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=20.4
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++|+|+||+|||||++++.+.
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3899999999999999999985
No 375
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.48 E-value=0.0016 Score=49.80 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=20.4
Q ss_pred CcceEEEcCCCCChhHHHHHHhc
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAG 176 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~ 176 (244)
...++++|++|+|||||++.+.+
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34589999999999999999976
No 376
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=96.47 E-value=0.0063 Score=53.60 Aligned_cols=65 Identities=15% Similarity=0.215 Sum_probs=42.9
Q ss_pred cceEEEcCCCCChhHHHHHHhcccCCC-eEEEEeCCCCCCHHHH-HHHhhhcC-----------------CCCceehhhH
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELEFG-ICVLNLSERGLTDDRL-NHLLSVAP-----------------QNSIILLEDI 215 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~~~-~g~i~~~~~~~~~~~~-~~~~~~~~-----------------q~~~lf~dei 215 (244)
..+++.|++|+||++++++|....... .-.+.++.....+..+ .+.|+... +...+|+|||
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a~~gtlfldei 240 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEI 240 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESG
T ss_pred CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccccCCceeeCCCcEEEEcCh
Confidence 347999999999999999998765422 2234455545555443 24555431 2468999999
Q ss_pred hhhh
Q psy1371 216 DAAF 219 (244)
Q Consensus 216 d~~~ 219 (244)
+.+.
T Consensus 241 ~~l~ 244 (387)
T 1ny5_A 241 GELS 244 (387)
T ss_dssp GGCC
T ss_pred hhCC
Confidence 8763
No 377
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.47 E-value=0.0014 Score=49.65 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=19.4
Q ss_pred ceEEEcCCCCChhHHHHHHhc
Q psy1371 156 GYLLYGPPGCGKSSFITALAG 176 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~ 176 (244)
.++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 379999999999999999986
No 378
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.46 E-value=0.0014 Score=56.36 Aligned_cols=28 Identities=25% Similarity=0.301 Sum_probs=22.7
Q ss_pred CCCCCCcceEEEcCCCCChhHHHHHHhcc
Q psy1371 149 RGIPYRRGYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 149 ~~~~~~~gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
=|++++ -+.++||||+|||||+..++..
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 468888 6899999999999997666543
No 379
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.46 E-value=0.0014 Score=49.75 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=19.1
Q ss_pred eEEEcCCCCChhHHHHHHhcc
Q psy1371 157 YLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 157 i~l~Gp~GsGKTtl~~~la~~ 177 (244)
++++|++|+|||||++.+.+.
T Consensus 5 i~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 799999999999999999753
No 380
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=96.46 E-value=0.0016 Score=69.90 Aligned_cols=65 Identities=20% Similarity=0.312 Sum_probs=49.5
Q ss_pred CcceEEEcCCCCChhHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHhhhc-CCCCceehhhHhhhh
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRLNHLLSVA-PQNSIILLEDIDAAF 219 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~~~~~~~~~~~~~~~~~~~-~q~~~lf~deid~~~ 219 (244)
+.+.++.||+|||||++++.+|..++.....+..++ +.....+.+.+.-+ ...+.+.+||++.+.
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e-~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~ 710 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDD-SFDYQVLSRLLVGITQIGAWGCFDEFNRLD 710 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTS-SCCHHHHHHHHHHHHHHTCEEEEETTTSSC
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCC-CCChhHhhHHHHHHHhcCCEeeehhhhhcC
Confidence 456799999999999999999999998887777654 44555666665433 346888899987653
No 381
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.45 E-value=0.0033 Score=53.55 Aligned_cols=24 Identities=38% Similarity=0.372 Sum_probs=21.4
Q ss_pred cceEEEcCCCCChhHHHHHHhccc
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
+.++++||+|+|||||++.++...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEECCCcCCHHHHHHHHHHHc
Confidence 458999999999999999998765
No 382
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.44 E-value=0.0014 Score=57.62 Aligned_cols=33 Identities=18% Similarity=0.131 Sum_probs=25.1
Q ss_pred CcceEEEcCCCCChhHHHHHHhcccCCCeEEEE
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAGELEFGICVLN 186 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~~~~~~~g~i~ 186 (244)
+..++++||||+||||+++.++..+....+.+.
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~ 67 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVI 67 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 455899999999999999999976544333333
No 383
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.43 E-value=0.0013 Score=49.38 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.7
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999854
No 384
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.42 E-value=0.0015 Score=56.06 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=22.7
Q ss_pred CcceEEEcCCCCChhHHHHHHhcccC
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
++-++|.||+|+|||||+..|+..++
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 34578999999999999999998775
No 385
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.42 E-value=0.0014 Score=49.38 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.8
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999853
No 386
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.41 E-value=0.0015 Score=49.53 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.4
Q ss_pred ceEEEcCCCCChhHHHHHHhccc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
.++++|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37999999999999999998653
No 387
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.40 E-value=0.0021 Score=50.07 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=20.7
Q ss_pred cceEEEcCCCCChhHHHHHHhcc
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
..++++|++|+|||||++.+.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 44899999999999999999875
No 388
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.40 E-value=0.0014 Score=55.91 Aligned_cols=26 Identities=31% Similarity=0.606 Sum_probs=22.2
Q ss_pred CCCcc-eEEEcCCCCChhHHHHHHhcc
Q psy1371 152 PYRRG-YLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 152 ~~~~g-i~l~Gp~GsGKTtl~~~la~~ 177 (244)
|++.| ++++|+||+|||||++.+.+.
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34455 899999999999999999975
No 389
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.40 E-value=0.0014 Score=50.10 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=19.9
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 390
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.40 E-value=0.0015 Score=49.99 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=19.7
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999853
No 391
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.39 E-value=0.0015 Score=49.42 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=19.6
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3799999999999999999854
No 392
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.39 E-value=0.0014 Score=49.61 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=19.7
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999999854
No 393
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.39 E-value=0.0016 Score=49.45 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=19.8
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999854
No 394
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.37 E-value=0.0016 Score=55.91 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.5
Q ss_pred ceEEEcCCCCChhHHHHHHhcccC
Q psy1371 156 GYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
-++|.||+|+|||||+..|+..++
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTT
T ss_pred EEEEECCCcCCHHHHHHHHHHhCc
Confidence 478999999999999999998765
No 395
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.36 E-value=0.0016 Score=49.91 Aligned_cols=22 Identities=23% Similarity=0.555 Sum_probs=19.7
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998764
No 396
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.35 E-value=0.0026 Score=54.59 Aligned_cols=35 Identities=26% Similarity=0.261 Sum_probs=26.6
Q ss_pred CCcceEEEcCCCCChhHHHHHHhc----ccCCCeEEEEe
Q psy1371 153 YRRGYLLYGPPGCGKSSFITALAG----ELEFGICVLNL 187 (244)
Q Consensus 153 ~~~gi~l~Gp~GsGKTtl~~~la~----~~~~~~g~i~~ 187 (244)
.+++++|.|+||+||||++..+.+ +...+...+..
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~ 181 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIRE 181 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEE
Confidence 467899999999999999999986 33334444443
No 397
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.35 E-value=0.0021 Score=49.86 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.6
Q ss_pred ceEEEcCCCCChhHHHHHHhccc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
.++++|++|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 48999999999999999998753
No 398
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.35 E-value=0.0016 Score=49.09 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.6
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999853
No 399
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.34 E-value=0.002 Score=49.24 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=20.0
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 400
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.33 E-value=0.0019 Score=51.45 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=20.7
Q ss_pred ceEEEcCCCCChhHHHHHHhccc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
.++++|++|+|||||++.+.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999754
No 401
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.32 E-value=0.0019 Score=49.40 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.8
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3899999999999999999864
No 402
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.31 E-value=0.0018 Score=49.00 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=19.3
Q ss_pred ceEEEcCCCCChhHHHHHHhc
Q psy1371 156 GYLLYGPPGCGKSSFITALAG 176 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~ 176 (244)
.++++|++|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 389999999999999999985
No 403
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.31 E-value=0.0021 Score=48.72 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.8
Q ss_pred cceEEEcCCCCChhHHHHHHhc
Q psy1371 155 RGYLLYGPPGCGKSSFITALAG 176 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~ 176 (244)
-.++++|++|+|||||++.+.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3489999999999999999975
No 404
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.30 E-value=0.015 Score=63.25 Aligned_cols=129 Identities=14% Similarity=0.128 Sum_probs=0.0
Q ss_pred EecCCCceeecCCCCCC-------CCCCccccChhHHHHHHHHHHHHhcChhhhhhCCCCCCcceEEEcCCCCChhHHHH
Q psy1371 100 YTALGSEWRPFGHPKRR-------RPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFIT 172 (244)
Q Consensus 100 ~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gi~l~Gp~GsGKTtl~~ 172 (244)
.......|.+|.+..+. ..+.++..+-....+...-+ ..-+..++.++|+||||||||++++
T Consensus 1254 ~~~~~~~w~~W~~~v~~~~~~~~~~~~~~ilVPT~DTvR~~~ll-----------~~ll~~~~pvLL~GptGtGKT~li~ 1322 (3245)
T 3vkg_A 1254 VSIDDANWSLWKNKVPSVEVETHKVASPDVVIPTVDTTRHVDVL-----------HAWLSEHRPLILCGPPGSGKTMTLT 1322 (3245)
T ss_dssp ECTTTCSEEETTCCC---CCCSTTTTCTTCCCCCHHHHHHHHHH-----------HHHHHTTCCCEEESSTTSSHHHHHH
T ss_pred EECCCCeeeehhhcCCccccCCccCCcccceecchHHHHHHHHH-----------HHHHHCCCcEEEECCCCCCHHHHHH
Q ss_pred HHhcccCCCeEEEEeCCCCCCHHHHHHHhhh------------------cCCCCceehhhHhhhhcccCcCcccHHHHHH
Q psy1371 173 ALAGELEFGICVLNLSERGLTDDRLNHLLSV------------------APQNSIILLEDIDAAFVTREESSQGLEDIDA 234 (244)
Q Consensus 173 ~la~~~~~~~g~i~~~~~~~~~~~~~~~~~~------------------~~q~~~lf~deid~~~~~r~~~~~~~~~~~~ 234 (244)
...+.+.......--.....+...+...+.. .-...++|+||++......-....-.+-+..
T Consensus 1323 ~~L~~l~~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrq 1402 (3245)
T 3vkg_A 1323 STLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQ 1402 (3245)
T ss_dssp HHGGGCTTEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTTTCCCCCTTSCCHHHHHHHH
T ss_pred HHHHhCCCCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEecccCCCCccccccccHHHHHHH
Q ss_pred HHHHh
Q psy1371 235 AFVTR 239 (244)
Q Consensus 235 ~~l~~ 239 (244)
.+-.+
T Consensus 1403 lld~~ 1407 (3245)
T 3vkg_A 1403 MVEKG 1407 (3245)
T ss_dssp HHHHS
T ss_pred HHHcC
No 405
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.26 E-value=0.002 Score=54.12 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=20.4
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++|+|+||+|||||++.+++.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4799999999999999999985
No 406
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.26 E-value=0.0017 Score=50.37 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.7
Q ss_pred cceEEEcCCCCChhHHHHHHhcc
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
-.++++|++|+|||||++.+.+.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 34899999999999999999975
No 407
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.25 E-value=0.0019 Score=49.92 Aligned_cols=21 Identities=29% Similarity=0.551 Sum_probs=19.5
Q ss_pred ceEEEcCCCCChhHHHHHHhc
Q psy1371 156 GYLLYGPPGCGKSSFITALAG 176 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~ 176 (244)
.++++|++|+|||||++.+.+
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999985
No 408
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.25 E-value=0.0019 Score=50.02 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=19.9
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3789999999999999999874
No 409
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.24 E-value=0.002 Score=49.71 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.8
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999999864
No 410
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.24 E-value=0.002 Score=53.53 Aligned_cols=22 Identities=41% Similarity=0.797 Sum_probs=20.5
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|+||+|||||++++.+.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5799999999999999999986
No 411
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.24 E-value=0.00095 Score=58.52 Aligned_cols=27 Identities=33% Similarity=0.515 Sum_probs=21.5
Q ss_pred CCCCCcc-eEEEcCCCCChhHHHHHHhc
Q psy1371 150 GIPYRRG-YLLYGPPGCGKSSFITALAG 176 (244)
Q Consensus 150 ~~~~~~g-i~l~Gp~GsGKTtl~~~la~ 176 (244)
.+.+..| .+|+||||+||||++.+|.-
T Consensus 20 ~i~f~~gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 20 RIKFEKGIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEECCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred EEecCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3344445 68999999999999999973
No 412
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.23 E-value=0.0027 Score=49.39 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.2
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
No 413
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.23 E-value=0.0021 Score=48.50 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=18.6
Q ss_pred eEEEcCCCCChhHHHHHHhc
Q psy1371 157 YLLYGPPGCGKSSFITALAG 176 (244)
Q Consensus 157 i~l~Gp~GsGKTtl~~~la~ 176 (244)
++++|++|+|||||++.+.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999999975
No 414
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.23 E-value=0.0028 Score=55.02 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=26.4
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHhccc
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
--|+.++.-++|.|+||+||||++..++...
T Consensus 40 ~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 40 TSGFNKGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp HCSBCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hcCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3478888889999999999999999888654
No 415
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.22 E-value=0.002 Score=49.22 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=19.3
Q ss_pred ceEEEcCCCCChhHHHHHHhc
Q psy1371 156 GYLLYGPPGCGKSSFITALAG 176 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~ 176 (244)
.++++|++|+|||||++.+.+
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999985
No 416
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.22 E-value=0.0029 Score=49.61 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.8
Q ss_pred cceEEEcCCCCChhHHHHHHhc
Q psy1371 155 RGYLLYGPPGCGKSSFITALAG 176 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~ 176 (244)
-.++++|++|+|||||++.+.+
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 3489999999999999999975
No 417
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.22 E-value=0.0021 Score=50.19 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=19.9
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999863
No 418
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.21 E-value=0.0023 Score=49.76 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=20.5
Q ss_pred ceEEEcCCCCChhHHHHHHhccc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
.++++|++|+|||||++.+.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 38999999999999999998754
No 419
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.20 E-value=0.0018 Score=56.78 Aligned_cols=30 Identities=33% Similarity=0.574 Sum_probs=25.6
Q ss_pred CCCCCCcceEEEcCCCCChhHHHHHHhccc
Q psy1371 149 RGIPYRRGYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 149 ~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
-|++.++.+.|+||||+|||||+..++...
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 368888889999999999999998887643
No 420
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.18 E-value=0.0022 Score=49.41 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.3
Q ss_pred CcceEEEcCCCCChhHHHHHHhc
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAG 176 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~ 176 (244)
.-.++++|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34589999999999999999984
No 421
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.16 E-value=0.0024 Score=48.96 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=19.8
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3899999999999999999864
No 422
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.16 E-value=0.0011 Score=60.69 Aligned_cols=30 Identities=27% Similarity=0.340 Sum_probs=23.1
Q ss_pred hCCCCCCcc-eEEEcCCCCChhHHHHHHhcc
Q psy1371 148 DRGIPYRRG-YLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 148 ~~~~~~~~g-i~l~Gp~GsGKTtl~~~la~~ 177 (244)
+..+....| .+|+|+||+||||++.+|...
T Consensus 53 ~~~l~f~~g~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 53 QLELELGGGFCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp CEEEECCCSEEEEEESHHHHHHHHTHHHHHH
T ss_pred eEEEecCCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 334444444 789999999999999999655
No 423
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.16 E-value=0.0023 Score=48.80 Aligned_cols=22 Identities=27% Similarity=0.623 Sum_probs=19.9
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 424
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.15 E-value=0.0023 Score=52.31 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=22.2
Q ss_pred cceEEEcCCCCChhHHHHHHhcccC
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
+-+.+.|++||||||+++.|+..+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4478999999999999999998774
No 425
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.14 E-value=0.0024 Score=49.09 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.8
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4899999999999999999853
No 426
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.12 E-value=0.0025 Score=49.52 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.8
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+++.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 427
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.12 E-value=0.0025 Score=48.82 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=19.8
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999853
No 428
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.12 E-value=0.0024 Score=52.31 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=19.3
Q ss_pred CcceEEEcCCCCChhHHHHHHhcccC
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
+.-+.|.||+||||||+++.|+..+.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34488999999999999999998764
No 429
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.12 E-value=0.0024 Score=49.31 Aligned_cols=22 Identities=27% Similarity=0.594 Sum_probs=19.8
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999853
No 430
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.11 E-value=0.0027 Score=49.76 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.3
Q ss_pred cceEEEcCCCCChhHHHHHHhcc
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
-.++++|++|+|||||++.+.+.
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 34899999999999999999864
No 431
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.11 E-value=0.0024 Score=49.52 Aligned_cols=22 Identities=23% Similarity=0.614 Sum_probs=19.8
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3799999999999999999864
No 432
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.11 E-value=0.0024 Score=51.66 Aligned_cols=26 Identities=38% Similarity=0.354 Sum_probs=22.3
Q ss_pred CcceEEEcCCCCChhHHHHHHhcccC
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
+.-+.|.||+||||||+++.|+..+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 44478999999999999999988764
No 433
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.09 E-value=0.0027 Score=49.12 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=20.4
Q ss_pred cceEEEcCCCCChhHHHHHHhcc
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
-.++++|++|+|||||++.+.+.
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 44899999999999999999864
No 434
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.09 E-value=0.0031 Score=65.95 Aligned_cols=31 Identities=26% Similarity=0.521 Sum_probs=27.3
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 150 GIPYRRGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 150 ~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
|+++++.++|.|+||+|||+|+..++.....
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~ 758 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQR 758 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 5888888999999999999999999976643
No 435
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.08 E-value=0.0017 Score=53.90 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.3
Q ss_pred cceEEEcCCCCChhHHHHHHhcccC
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
.-+.|.|++||||||+++.|+..+.
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4489999999999999999998874
No 436
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.06 E-value=0.0027 Score=49.35 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=19.8
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 437
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.05 E-value=0.0028 Score=49.86 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.2
Q ss_pred cceEEEcCCCCChhHHHHHHhcc
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
-.++++|++|+|||||++.+.+.
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 34899999999999999999854
No 438
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.05 E-value=0.0053 Score=55.11 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=22.3
Q ss_pred CcceEEEcCCCCChhHHHHHHhcccC
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
+..++++||+|+||||++..|+..+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 45689999999999999999987653
No 439
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.04 E-value=0.0025 Score=56.50 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=22.4
Q ss_pred cceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
+-++|.||+|+|||||++.|+..++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~ 28 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNG 28 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTE
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCC
Confidence 34789999999999999999987753
No 440
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.04 E-value=0.0035 Score=50.10 Aligned_cols=27 Identities=15% Similarity=0.065 Sum_probs=23.8
Q ss_pred ceEEEcCCCCChhHHHHHHhcccCCCe
Q psy1371 156 GYLLYGPPGCGKSSFITALAGELEFGI 182 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~~~~~ 182 (244)
-+.|.||+||||||+++.||..++.+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~ 34 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPL 34 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCE
Confidence 489999999999999999999887553
No 441
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.03 E-value=0.0031 Score=49.56 Aligned_cols=23 Identities=30% Similarity=0.483 Sum_probs=20.4
Q ss_pred cceEEEcCCCCChhHHHHHHhcc
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
-.++++|++|+|||||++.+.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 34899999999999999999864
No 442
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.03 E-value=0.0029 Score=49.27 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=20.0
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 443
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.03 E-value=0.003 Score=49.22 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=18.0
Q ss_pred eEEEcCCCCChhHHHHHHhc
Q psy1371 157 YLLYGPPGCGKSSFITALAG 176 (244)
Q Consensus 157 i~l~Gp~GsGKTtl~~~la~ 176 (244)
++++|++|+|||||++.+.+
T Consensus 23 i~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 89999999999999977664
No 444
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.02 E-value=0.003 Score=52.02 Aligned_cols=23 Identities=30% Similarity=0.483 Sum_probs=20.6
Q ss_pred ceEEEcCCCCChhHHHHHHhccc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
.++|+|+||+|||||++.|.+.-
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999998753
No 445
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.02 E-value=0.003 Score=48.69 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.8
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999999854
No 446
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.02 E-value=0.0028 Score=49.52 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.7
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3899999999999999999754
No 447
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.02 E-value=0.0026 Score=60.16 Aligned_cols=32 Identities=28% Similarity=0.304 Sum_probs=25.7
Q ss_pred CCCCCCcceEEEcCCCCChhHHHHHHhcccCC
Q psy1371 149 RGIPYRRGYLLYGPPGCGKSSFITALAGELEF 180 (244)
Q Consensus 149 ~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~~~ 180 (244)
+.++.++.++++|++|+|||||++.+++...+
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~ 35 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGA 35 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcCC
Confidence 34556677999999999999999999976654
No 448
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.02 E-value=0.003 Score=48.60 Aligned_cols=21 Identities=14% Similarity=0.349 Sum_probs=19.1
Q ss_pred ceEEEcCCCCChhHHHHHHhc
Q psy1371 156 GYLLYGPPGCGKSSFITALAG 176 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~ 176 (244)
.++++|++|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 389999999999999999974
No 449
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.02 E-value=0.0026 Score=55.36 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=20.6
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||+++|.|.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5899999999999999999993
No 450
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.02 E-value=0.005 Score=51.63 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=21.0
Q ss_pred ceEEEcCCCCChhHHHHHHhccc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
.++++|+||+|||||++++.+.-
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 49999999999999999999864
No 451
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.01 E-value=0.003 Score=49.65 Aligned_cols=22 Identities=23% Similarity=0.551 Sum_probs=19.9
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 452
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.00 E-value=0.0032 Score=52.30 Aligned_cols=22 Identities=41% Similarity=0.613 Sum_probs=20.2
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|+||+|||||++.+++.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3899999999999999999974
No 453
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.99 E-value=0.0029 Score=49.34 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.4
Q ss_pred cceEEEcCCCCChhHHHHHHhcc
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
..++++|++|+|||||++.+.+.
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 34899999999999999999864
No 454
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.99 E-value=0.0031 Score=49.52 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.7
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999853
No 455
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.99 E-value=0.0024 Score=50.33 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=19.6
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+++.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3899999999999999999753
No 456
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=95.97 E-value=0.0013 Score=64.48 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=23.5
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHh
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALA 175 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la 175 (244)
++.++.++-++|+||||||||||+++|.
T Consensus 662 sl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 662 DVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp EEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred eEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 4566677779999999999999999853
No 457
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.97 E-value=0.0037 Score=47.96 Aligned_cols=23 Identities=13% Similarity=0.274 Sum_probs=20.2
Q ss_pred cceEEEcCCCCChhHHHHHHhcc
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
-.++++|++|+|||||++.+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 34899999999999999999854
No 458
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.97 E-value=0.0031 Score=50.39 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.1
Q ss_pred cceEEEcCCCCChhHHHHHHhccc
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
..++++|++|+|||||++.+++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 348999999999999999998764
No 459
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.96 E-value=0.0033 Score=48.87 Aligned_cols=21 Identities=14% Similarity=0.352 Sum_probs=19.2
Q ss_pred ceEEEcCCCCChhHHHHHHhc
Q psy1371 156 GYLLYGPPGCGKSSFITALAG 176 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~ 176 (244)
.++++|++|+|||||++.+.+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999974
No 460
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.96 E-value=0.004 Score=55.89 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=25.7
Q ss_pred CCCCCCcceEEEcCCCCChhHHHHHHhccc
Q psy1371 149 RGIPYRRGYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 149 ~~~~~~~gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
-|++++.-++|.||||+|||+++..++...
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 368888889999999999999998888644
No 461
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.95 E-value=0.0046 Score=54.12 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=19.8
Q ss_pred ceEEEcCCCCChhHHHHHHhc
Q psy1371 156 GYLLYGPPGCGKSSFITALAG 176 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~ 176 (244)
.++|+|+||+|||||+++|++
T Consensus 4 kI~IVG~pnvGKSTL~n~Lt~ 24 (363)
T 1jal_A 4 KCGIVGLPNVGKSTLFNALTK 24 (363)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 479999999999999999998
No 462
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.95 E-value=0.0031 Score=49.16 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.3
Q ss_pred ceEEEcCCCCChhHHHHHHhccc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
.++++|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 37999999999999999998643
No 463
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.94 E-value=0.0034 Score=48.74 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=19.9
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 464
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.94 E-value=0.0033 Score=49.07 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=19.5
Q ss_pred ceEEEcCCCCChhHHHHHHhc
Q psy1371 156 GYLLYGPPGCGKSSFITALAG 176 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~ 176 (244)
.++++|++|+|||||++.+.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 489999999999999999986
No 465
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.93 E-value=0.0033 Score=48.33 Aligned_cols=21 Identities=24% Similarity=0.301 Sum_probs=19.2
Q ss_pred ceEEEcCCCCChhHHHHHHhc
Q psy1371 156 GYLLYGPPGCGKSSFITALAG 176 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~ 176 (244)
.++++|++|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 489999999999999999983
No 466
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.93 E-value=0.0031 Score=52.71 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=18.9
Q ss_pred eEEEcCCCCChhHHHHHHhcc
Q psy1371 157 YLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 157 i~l~Gp~GsGKTtl~~~la~~ 177 (244)
++++|++|+|||||++.|.+.
T Consensus 11 I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEECTTSSHHHHHHHHSSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999997653
No 467
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.92 E-value=0.0033 Score=49.54 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.4
Q ss_pred cceEEEcCCCCChhHHHHHHhcc
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
-.++++|++|+|||||++.+.+.
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 34899999999999999999864
No 468
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.92 E-value=0.0039 Score=50.59 Aligned_cols=28 Identities=21% Similarity=0.190 Sum_probs=24.4
Q ss_pred CcceEEEcCCCCChhHHHHHHhcccCCC
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAGELEFG 181 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~~~~~~ 181 (244)
++-+.+.||+||||||+++.|+..+...
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~ 32 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPN 32 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 4458899999999999999999988763
No 469
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.90 E-value=0.0036 Score=48.76 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=19.3
Q ss_pred ceEEEcCCCCChhHHHHHHhc
Q psy1371 156 GYLLYGPPGCGKSSFITALAG 176 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~ 176 (244)
.++++|++|+|||||++.+.+
T Consensus 24 ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 389999999999999999985
No 470
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.90 E-value=0.0036 Score=48.84 Aligned_cols=21 Identities=29% Similarity=0.708 Sum_probs=19.3
Q ss_pred eEEEcCCCCChhHHHHHHhcc
Q psy1371 157 YLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 157 i~l~Gp~GsGKTtl~~~la~~ 177 (244)
++++|++|+|||||++.+.+.
T Consensus 24 i~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 799999999999999999853
No 471
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.89 E-value=0.0034 Score=49.51 Aligned_cols=22 Identities=32% Similarity=0.603 Sum_probs=19.8
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999853
No 472
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.89 E-value=0.0038 Score=48.44 Aligned_cols=22 Identities=14% Similarity=0.327 Sum_probs=19.8
Q ss_pred cceEEEcCCCCChhHHHHHHhc
Q psy1371 155 RGYLLYGPPGCGKSSFITALAG 176 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~ 176 (244)
-.++++|++|+|||||++.+.+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3489999999999999999984
No 473
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.88 E-value=0.0038 Score=49.24 Aligned_cols=22 Identities=27% Similarity=0.610 Sum_probs=19.4
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999853
No 474
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.88 E-value=0.0037 Score=49.41 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.1
Q ss_pred cceEEEcCCCCChhHHHHHHhcc
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
-.++++|++|+|||||++.+.+.
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 34899999999999999999853
No 475
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.88 E-value=0.0036 Score=48.99 Aligned_cols=22 Identities=23% Similarity=0.579 Sum_probs=19.4
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999864
No 476
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.87 E-value=0.0038 Score=48.77 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=20.0
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3899999999999999999864
No 477
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.86 E-value=0.0037 Score=51.43 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=22.3
Q ss_pred CcceEEEcCCCCChhHHHHHHhcccC
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAGELE 179 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~~~~ 179 (244)
+.-+.|.||+||||||+++.|+..+.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44588999999999999999988764
No 478
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.86 E-value=0.0043 Score=50.06 Aligned_cols=23 Identities=35% Similarity=0.667 Sum_probs=20.5
Q ss_pred cceEEEcCCCCChhHHHHHHhcc
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
..++++|++|+|||||++.+.+.
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 34899999999999999999874
No 479
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.86 E-value=0.0038 Score=49.04 Aligned_cols=21 Identities=38% Similarity=0.649 Sum_probs=19.3
Q ss_pred ceEEEcCCCCChhHHHHHHhc
Q psy1371 156 GYLLYGPPGCGKSSFITALAG 176 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~ 176 (244)
.++++|+||+|||||++.+.+
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999985
No 480
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=95.86 E-value=0.0037 Score=53.57 Aligned_cols=24 Identities=38% Similarity=0.527 Sum_probs=21.2
Q ss_pred CCcceEEEcCCCCChhHHHHHHhc
Q psy1371 153 YRRGYLLYGPPGCGKSSFITALAG 176 (244)
Q Consensus 153 ~~~gi~l~Gp~GsGKTtl~~~la~ 176 (244)
.++|++|.||||+||||++..+..
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 368899999999999999988864
No 481
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.85 E-value=0.0039 Score=48.58 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=19.0
Q ss_pred ceEEEcCCCCChhHHHHHHhc
Q psy1371 156 GYLLYGPPGCGKSSFITALAG 176 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~ 176 (244)
.++++|++|+|||||++.+.+
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 389999999999999988875
No 482
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.84 E-value=0.004 Score=51.31 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=20.2
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++|+|++|+|||||++.+.+.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999864
No 483
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.84 E-value=0.0037 Score=49.64 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=19.5
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999998753
No 484
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.83 E-value=0.008 Score=56.49 Aligned_cols=22 Identities=27% Similarity=0.671 Sum_probs=15.9
Q ss_pred eEEEcCCCCChhHH-HHHHhccc
Q psy1371 157 YLLYGPPGCGKSSF-ITALAGEL 178 (244)
Q Consensus 157 i~l~Gp~GsGKTtl-~~~la~~~ 178 (244)
.+|.||||||||++ +.+|..++
T Consensus 208 ~lI~GPPGTGKT~ti~~~I~~l~ 230 (646)
T 4b3f_X 208 AIIHGPPGTGKTTTVVEIILQAV 230 (646)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 48999999999975 44444444
No 485
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.82 E-value=0.0066 Score=52.81 Aligned_cols=24 Identities=42% Similarity=0.513 Sum_probs=21.1
Q ss_pred cceEEEcCCCCChhHHHHHHhccc
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
..++++|+||+||||++..|+..+
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 348999999999999999998765
No 486
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=95.82 E-value=0.0013 Score=64.30 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=23.6
Q ss_pred hCCCCCCcceEEEcCCCCChhHHHHHHh
Q psy1371 148 DRGIPYRRGYLLYGPPGCGKSSFITALA 175 (244)
Q Consensus 148 ~~~~~~~~gi~l~Gp~GsGKTtl~~~la 175 (244)
++.++.++-++|+|+||||||||++.++
T Consensus 644 sl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 644 SVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp EEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred eEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 4566777779999999999999999853
No 487
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.82 E-value=0.0031 Score=49.08 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.6
Q ss_pred ceEEEcCCCCChhHHHHHHhccc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
.++++|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38999999999999999998754
No 488
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.82 E-value=0.0044 Score=49.26 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=19.9
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 489
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.82 E-value=0.0035 Score=48.40 Aligned_cols=22 Identities=14% Similarity=0.332 Sum_probs=19.8
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999863
No 490
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.82 E-value=0.0041 Score=52.10 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=20.3
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++++.+.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999975
No 491
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.81 E-value=0.0035 Score=48.04 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=19.8
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999863
No 492
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.80 E-value=0.0028 Score=48.82 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=9.6
Q ss_pred cceEEEcCCCCChhHHHHHHhcc
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
-.++++|++|+|||||++.+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 34899999999999999998754
No 493
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.80 E-value=0.0039 Score=49.61 Aligned_cols=22 Identities=23% Similarity=0.614 Sum_probs=20.0
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 494
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.80 E-value=0.0041 Score=48.98 Aligned_cols=22 Identities=18% Similarity=0.301 Sum_probs=17.3
Q ss_pred cceEEEcCCCCChhHHHHHHhc
Q psy1371 155 RGYLLYGPPGCGKSSFITALAG 176 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~ 176 (244)
+-++++||+|+||||++..++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4468999999999999854443
No 495
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.79 E-value=0.0046 Score=48.46 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=19.3
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999853
No 496
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.75 E-value=0.008 Score=50.85 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=21.0
Q ss_pred ceEEEcCCCCChhHHHHHHhccc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGEL 178 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~~ 178 (244)
.++++|++|+|||||+++|.+.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 39999999999999999999864
No 497
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.75 E-value=0.0043 Score=49.13 Aligned_cols=23 Identities=17% Similarity=0.592 Sum_probs=20.4
Q ss_pred cceEEEcCCCCChhHHHHHHhcc
Q psy1371 155 RGYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 155 ~gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
..++++|++|+|||||++.+.+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999863
No 498
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.74 E-value=0.0047 Score=49.27 Aligned_cols=22 Identities=36% Similarity=0.703 Sum_probs=19.5
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999863
No 499
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.73 E-value=0.0044 Score=48.11 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.1
Q ss_pred CcceEEEcCCCCChhHHHHHHhc
Q psy1371 154 RRGYLLYGPPGCGKSSFITALAG 176 (244)
Q Consensus 154 ~~gi~l~Gp~GsGKTtl~~~la~ 176 (244)
.-.++++|++|+|||||++.+.+
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 34589999999999999999964
No 500
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.73 E-value=0.0046 Score=49.06 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.8
Q ss_pred ceEEEcCCCCChhHHHHHHhcc
Q psy1371 156 GYLLYGPPGCGKSSFITALAGE 177 (244)
Q Consensus 156 gi~l~Gp~GsGKTtl~~~la~~ 177 (244)
.++++|++|+|||||++.+.+.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999853
Done!