RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1371
(244 letters)
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian
virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A
2h1l_A
Length = 377
Score = 70.8 bits (173), Expect = 2e-14
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 5/95 (5%)
Query: 135 DIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD 194
+ V D + IP +R +L GP GK++ AL G LN++ L
Sbjct: 150 KMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC--GGKALNVN---LPL 204
Query: 195 DRLNHLLSVAPQNSIILLEDIDAAFVTREESSQGL 229
DRLN L VA +++ ED+ + G
Sbjct: 205 DRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQ 239
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 65.6 bits (160), Expect = 2e-12
Identities = 42/142 (29%), Positives = 62/142 (43%), Gaps = 12/142 (8%)
Query: 101 TALGSEWRPFGHPKRRRPLNSVVLDS-GVADRILTDIKQFVA----DPAWYLDRGIPYRR 155
T + E P LN V D G + L IK+ V PA + G+ R
Sbjct: 180 TVIHCEGEPIKREDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPR 239
Query: 156 GYLLYGPPGCGKSSFITALAGELEFGICVLNLSE-----RGLTDDRLNHLLSVAPQN--S 208
G LLYGPPG GK+ A+A E ++N E G ++ L A +N +
Sbjct: 240 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPA 299
Query: 209 IILLEDIDAAFVTREESSQGLE 230
II ++++DA RE++ +E
Sbjct: 300 IIFIDELDAIAPKREKTHGEVE 321
Score = 45.2 bits (107), Expect = 1e-05
Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 25/116 (21%)
Query: 133 LTDIKQFVAD--------PAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF---- 180
L D+K+ + + P +L G+ +G L YGPPGCGK+ A+A E +
Sbjct: 482 LEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFIS 541
Query: 181 --GICVLNL----SERGLTDDRLNHLLSVAPQN--SIILLEDIDAAFVTREESSQG 228
G +L + SE + + + A Q ++ +++D+ R +
Sbjct: 542 IKGPELLTMWFGESEANVRE-----IFDKARQAAPCVLFFDELDSIAKARGGNIGD 592
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 60.2 bits (146), Expect = 8e-11
Identities = 42/142 (29%), Positives = 62/142 (43%), Gaps = 12/142 (8%)
Query: 101 TALGSEWRPFGHPKRRRPLNSVVLDS-GVADRILTDIKQFVA----DPAWYLDRGIPYRR 155
T + E P LN V D G + L IK+ V PA + G+ R
Sbjct: 180 TVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPR 239
Query: 156 GYLLYGPPGCGKSSFITALAGELEFGICVLNLSE-----RGLTDDRLNHLLSVAPQN--S 208
G LLYGPPG GK+ A+A E ++N E G ++ L A +N +
Sbjct: 240 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPA 299
Query: 209 IILLEDIDAAFVTREESSQGLE 230
II ++++DA RE++ +E
Sbjct: 300 IIFIDELDAIAPKREKTHGEVE 321
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.6 bits (138), Expect = 1e-09
Identities = 31/186 (16%), Positives = 61/186 (32%), Gaps = 46/186 (24%)
Query: 75 LGAGAAILRKARTLALKQYEGKTVMYTALGS------EW--RPFGHPKRRRPLNSVVLDS 126
+ + A+ R + + ++ + ++ P +R+ + + +
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 127 GVADRILTDIKQFVADPAWYLDRGIPYRR------------GYLLYGPPGCGKSSFITAL 174
DR+ D + F R PY + L+ G G GK+ +
Sbjct: 115 QR-DRLYNDNQVFAKYNVS---RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW----V 166
Query: 175 AGE----------LEFGICVLNLSERGLTDDRLNHLLSVAPQNSIILLEDIDAAFVTREE 224
A + ++F I LNL + L L Q LL ID + +R +
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML-----QK---LLYQIDPNWTSRSD 218
Query: 225 SSQGLE 230
S ++
Sbjct: 219 HSSNIK 224
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 53.3 bits (128), Expect = 2e-08
Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 11/86 (12%)
Query: 117 RP--LNSVVLDSGVADRILTDIKQF----VADPAWYLDRGIPYRRGYLLYGPPGCGKSSF 170
P L V + G ++ + + G R +LYGPPG GK++
Sbjct: 34 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTA 93
Query: 171 ITALAGELEFGICVLNLSERGLTDDR 196
+A EL + I N S D R
Sbjct: 94 AHLVAQELGYDILEQNAS-----DVR 114
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase;
HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP:
c.37.1.20 PDB: 1s9h_A
Length = 267
Score = 43.8 bits (103), Expect = 2e-05
Identities = 12/52 (23%), Positives = 21/52 (40%)
Query: 135 DIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLN 186
D + + + + R L+GP GK++ A+A + F CV
Sbjct: 85 DPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFYGCVNW 136
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding,
cell CELL division, hydrolase, membrane, metal-binding;
3.30A {Helicobacter pylori} PDB: 2r65_A*
Length = 268
Score = 43.4 bits (103), Expect = 3e-05
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 133 LTDIKQFVADPAWYLDRG--IPYRRGYLLYGPPGCGKSSFITALAGE 177
+ +I F+ P Y + G IP +G LL GPPG GK+ A+AGE
Sbjct: 23 VVEIVDFLKYPERYANLGAKIP--KGVLLVGPPGTGKTLLAKAVAGE 67
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA
translocation, nucleotide-binding, DNA-binding; 3.00A
{Bovine papillomavirus type 1} PDB: 2gxa_A*
Length = 305
Score = 43.0 bits (101), Expect = 3e-05
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 135 DIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD 194
++ F+ +L +GIP + GPP GKS +L L G VL+ +
Sbjct: 108 ELITFINALKLWL-KGIPKKNCLAFIGPPNTGKSMLCNSLIHFL--GGSVLS-----FAN 159
Query: 195 DRLNHLLSVAPQNSIILLED 214
+ + L+ L++D
Sbjct: 160 HKSHFWLASLADTRAALVDD 179
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB:
1iy0_A* 1iy1_A*
Length = 254
Score = 42.7 bits (101), Expect = 4e-05
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 11/94 (11%)
Query: 133 LTDIKQFVADPAWYLDRG--IPYRRGYLLYGPPGCGKSSFITALAGELE---FGICVLNL 187
L +I +F+ +P+ + + G IP +G LL GPPG GK+ A+AGE +
Sbjct: 28 LKEIVEFLKNPSRFHEMGARIP--KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 85
Query: 188 SER--GLTDDRLNHLLSVAPQNS--IILLEDIDA 217
E G+ R+ L A +++ I+ +++IDA
Sbjct: 86 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDA 119
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain,
ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus}
SCOP: c.37.1.20 PDB: 1nsf_A*
Length = 272
Score = 42.8 bits (101), Expect = 4e-05
Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 11/96 (11%)
Query: 130 DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE 189
R+L D + V P LL GPP GK++ +A E F + +
Sbjct: 43 TRVLDDGELLVQQTK--NSDRTP-LVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD 99
Query: 190 --RGLTD----DRLNHLLSVAPQN--SIILLEDIDA 217
G ++ + + A ++ S ++++DI+
Sbjct: 100 KMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIER 135
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48, ATP-binding, lipid-binding, nucle binding,
nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus
musculus}
Length = 301
Score = 42.6 bits (101), Expect = 5e-05
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 143 PAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGE 177
P +L G+ +G L YGPPGCGK+ A+A E
Sbjct: 38 PDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 72
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A
{Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB:
2cea_A* 3kds_E*
Length = 476
Score = 42.9 bits (102), Expect = 5e-05
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 133 LTDIKQFVADPAWYLDRG--IPYRRGYLLYGPPGCGKSSFITALAGE 177
L ++ +F+ DP+ + G +P +G LL GPPG GK+ A+AGE
Sbjct: 28 LKEVVEFLKDPSKFNRIGARMP--KGILLVGPPGTGKTLLARAVAGE 72
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A
{Escherichia coli} SCOP: c.37.1.20
Length = 257
Score = 42.3 bits (100), Expect = 5e-05
Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 11/94 (11%)
Query: 133 LTDIKQFVADPAWYLDRG--IPYRRGYLLYGPPGCGKSSFITALAGELE---FGICVLNL 187
+ ++ +++ +P+ + G IP +G L+ GPPG GK+ A+AGE + F I +
Sbjct: 24 VAELVEYLREPSRFQKLGGKIP--KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDF 81
Query: 188 SER--GLTDDRLNHLLSVAPQNS--IILLEDIDA 217
E G+ R+ + A + + II +++IDA
Sbjct: 82 VEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDA 115
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATP ATP-binding,
nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus
fulgidus} PDB: 2chv_A
Length = 319
Score = 42.7 bits (101), Expect = 5e-05
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 8/42 (19%)
Query: 158 LLYGPPGCGKSSFITALAGELEFG------ICVLNLS-ERGL 192
L GPPG GK++ ALA +L FG +N S ERG+
Sbjct: 42 LFSGPPGTGKTATAIALARDL-FGENWRDNFIEMNASDERGI 82
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo
sapiens}
Length = 389
Score = 42.5 bits (100), Expect = 6e-05
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Query: 155 RGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD------DRL-NHLLSVAPQN 207
RG LL+GPPG GK+ A+A E N+S LT ++L L +VA +
Sbjct: 149 RGLLLFGPPGNGKTMLAKAVAAES--NATFFNISAASLTSKYVGEGEKLVRALFAVAREL 206
Query: 208 --SIILLEDIDAAFVTREES 225
SII ++ +D+ R E
Sbjct: 207 QPSIIFIDQVDSLLCERREG 226
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural
genomics consortium, ATP- hydrolase, magnesium,
metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo
sapiens}
Length = 357
Score = 42.1 bits (99), Expect = 7e-05
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Query: 155 RGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD------DRL-NHLLSVAPQN 207
+G LL+GPPG GK+ +A + G ++S LT +++ L +VA
Sbjct: 118 KGILLFGPPGTGKTLIGKCIASQS--GATFFSISASSLTSKWVGEGEKMVRALFAVARCQ 175
Query: 208 --SIILLEDIDAAFVTREES 225
++I +++ID+ R +
Sbjct: 176 QPAVIFIDEIDSLLSQRGDG 195
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET:
ADP; 3.90A {Thermus thermophilus}
Length = 499
Score = 42.2 bits (100), Expect = 7e-05
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Query: 133 LTDIKQFVADPAWYLDRG--IPYRRGYLLYGPPGCGKSSFITALAGE 177
L +I +F+ +P+ + + G IP +G LL GPPG GK+ A+AGE
Sbjct: 43 LKEIVEFLKNPSRFHEMGARIP--KGVLLVGPPGVGKTHLARAVAGE 87
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP,
replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP:
a.80.1.1 c.37.1.20
Length = 327
Score = 42.0 bits (99), Expect = 8e-05
Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 8/42 (19%)
Query: 158 LLYGPPGCGKSSFITALAGELEFG------ICVLNLS-ERGL 192
L GPPG GK++ ALA EL FG LN S ERG+
Sbjct: 50 LFAGPPGVGKTTAALALAREL-FGENWRHNFLELNASDERGI 90
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus
fulgidus}
Length = 226
Score = 41.4 bits (98), Expect = 9e-05
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 8/42 (19%)
Query: 158 LLYGPPGCGKSSFITALAGELEFG------ICVLNLS-ERGL 192
L GPPG GK++ ALA +L FG +N S ERG+
Sbjct: 42 LFSGPPGTGKTATAIALARDL-FGENWRDNFIEMNASDERGI 82
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A
{Homo sapiens}
Length = 274
Score = 41.8 bits (99), Expect = 9e-05
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 143 PAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGE 177
P + G+ G LL GPPGCGK+ A+A E
Sbjct: 33 PDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANE 67
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
3.20A {Thermus thermophilus} SCOP: c.37.1.20
Length = 278
Score = 41.6 bits (98), Expect = 1e-04
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 11/94 (11%)
Query: 133 LTDIKQFVADPAWYLDRG--IPYRRGYLLYGPPGCGKSSFITALAGELE---FGICVLNL 187
L +I +F+ +P+ + + G IP +G LL GPPG GK+ A+AGE +
Sbjct: 52 LKEIVEFLKNPSRFHEMGARIP--KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 109
Query: 188 SER--GLTDDRLNHLLSVAPQNS--IILLEDIDA 217
E G+ R+ L A +++ I+ +++IDA
Sbjct: 110 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDA 143
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding,
hydrolase; 2.70A {Drosophila melanogaster}
Length = 297
Score = 41.5 bits (98), Expect = 1e-04
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Query: 155 RGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD------DRLNHLL-SVAPQN 207
+G LL+GPPG GK+ A+A E LN+S LT ++L L +VA
Sbjct: 55 KGLLLFGPPGNGKTLLARAVATEC--SATFLNISAASLTSKYVGDGEKLVRALFAVARHM 112
Query: 208 --SIILLEDIDAAFVTREES 225
SII ++++D+ R S
Sbjct: 113 QPSIIFIDEVDSLLSERSSS 132
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics,
structural G consortium, SGC, ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo
sapiens}
Length = 262
Score = 39.9 bits (94), Expect = 3e-04
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 133 LTDIKQFVADPAWYLDRG--IPYRRGYLLYGPPGCGKSSFITALAGE 177
+ + ++ P +L G +P +G LL GPPGCGK+ A+A E
Sbjct: 18 VREFVDYLKSPERFLQLGAKVP--KGALLLGPPGCGKTLLAKAVATE 62
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 39.0 bits (91), Expect = 8e-04
Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 23/96 (23%)
Query: 150 GIPYRRGYLLYGPPGCGKS------------SFITALAGELEFGICVLNLSE-----RGL 192
I ++G G GKS + I AGELE G N E R
Sbjct: 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESG----NAGEPAKLIRQR 87
Query: 193 TDDRLNHLLSVAPQNSIILLEDIDAAFVTREESSQG 228
+ + + + D+DA ++Q
Sbjct: 88 YREAAEIIRKGNM--CCLFINDLDAGAGRMGGTTQY 121
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding,
nucleotide-binding, HY; HET: ADP; 3.11A
{Methanocaldococcus jannaschii}
Length = 285
Score = 38.4 bits (90), Expect = 0.001
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 143 PAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE-----RGLTDDRL 197
P + GI +G LLYGPPG GK+ A+A E + SE G +
Sbjct: 40 PELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLV 99
Query: 198 NHLLSVAPQN--SIILLEDIDAAFVTREESSQGLE 230
+ +A + SII +++IDA R ++ G +
Sbjct: 100 KDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGD 134
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo
sapiens}
Length = 322
Score = 38.1 bits (89), Expect = 0.001
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 155 RGYLLYGPPGCGKSSFITALAGE 177
RG LL+GPPG GKS A+A E
Sbjct: 46 RGILLFGPPGTGKSYLAKAVATE 68
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 353
Score = 38.3 bits (89), Expect = 0.002
Identities = 22/43 (51%), Positives = 25/43 (58%), Gaps = 9/43 (20%)
Query: 158 LLYGPPGCGKSSFITALAGELEFG-------ICVLNLS-ERGL 192
L YGPPG GK+S I AL EL +G I LN S ERG+
Sbjct: 62 LFYGPPGTGKTSTILALTKEL-YGPDLMKSRILELNASDERGI 103
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 340
Score = 37.8 bits (88), Expect = 0.002
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 23/85 (27%)
Query: 117 RP--LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITAL 174
RP L+ V + ++T +++FV + +P+ L YGPPG GK+S I AL
Sbjct: 20 RPETLDEVYGQ----NEVITTVRKFVDEGK------LPH---LLFYGPPGTGKTSTIVAL 66
Query: 175 AGELEFG------ICVLNLS-ERGL 192
A E+ +G + LN S +RG+
Sbjct: 67 AREI-YGKNYSNMVLELNASDDRGI 90
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase,
ATP-binding cassette, ATP-binding, endosome, MEM
nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
PDB: 3eih_A* 2rko_A 3mhv_C
Length = 322
Score = 37.3 bits (87), Expect = 0.003
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 17/83 (20%)
Query: 155 RGYLLYGPPGCGKSSFITALAGELE---FGICVLNL-------SERGLTDDRLNHLLSVA 204
G LLYGPPG GKS A+A E F + +L SE+ + L ++A
Sbjct: 52 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQ-----LFAMA 106
Query: 205 PQN--SIILLEDIDAAFVTREES 225
+N SII ++ +DA TR E
Sbjct: 107 RENKPSIIFIDQVDALTGTRGEG 129
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 37.1 bits (86), Expect = 0.003
Identities = 26/128 (20%), Positives = 50/128 (39%), Gaps = 24/128 (18%)
Query: 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 178
L+ + +++ + I FV ++G LYG G GKS + A+A EL
Sbjct: 123 LSDIDVNNASRMEAFSAILDFVEQ------YPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176
Query: 179 --EFGICVL--NLSE----------RGLTDDRLNHLLSVAPQNSIILLEDIDAAFVTREE 224
+ G+ + G + ++ + +V +++L+DI A T
Sbjct: 177 SEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKNV----PVLILDDIGAEQATSWV 232
Query: 225 SSQGLEDI 232
+ L+ I
Sbjct: 233 RDEVLQVI 240
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 37.4 bits (86), Expect = 0.003
Identities = 12/89 (13%), Positives = 25/89 (28%), Gaps = 5/89 (5%)
Query: 157 YLLYGPPGCGKSSFITALAGELEFGICVLNLSE--RGLTDDRLNHLLSVAPQNSIILLED 214
L G PG GKS++ + G +N + + + + I+
Sbjct: 5 ILTIGCPGSGKSTWAREFIAKNP-GFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGM 63
Query: 215 IDAAFVTREESSQGLED--IDAAFVTREE 241
+ ++ I + E
Sbjct: 64 QFDTAKSILYGGDSVKGVIISDTNLNPER 92
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 37.0 bits (85), Expect = 0.004
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 143 PAWYLDRGIPYRRGYLLYGPPGCGKSSFITALA 175
P Y+ + L P G GKS LA
Sbjct: 19 PLDYVLPNMVAGTVGALVSPGGAGKSMLALQLA 51
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 35.8 bits (83), Expect = 0.006
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 178
L+ V L+ + + ++FVA+ +G L+G G GK+ + A+A EL
Sbjct: 24 LSDVDLNDDGRIKAIRFAERFVAEYEP-----GKKMKGLYLHGSFGVGKTYLLAAIANEL 78
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 36.1 bits (83), Expect = 0.007
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 147 LDR----GIPYRRGYLLYGPPGCGKSSFIT--ALAGELEFGICVL 185
D G+P R L+ G G GK+ F G +EF +
Sbjct: 28 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGV 72
Score = 34.5 bits (79), Expect = 0.023
Identities = 11/71 (15%), Positives = 17/71 (23%), Gaps = 4/71 (5%)
Query: 112 HPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDR----GIPYRRGYLLYGPPGCGK 167
+P + G V+ LD G L G G GK
Sbjct: 235 YPFTITDHGINIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGK 294
Query: 168 SSFITALAGEL 178
+ ++
Sbjct: 295 TLLVSRFVENA 305
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 35.4 bits (82), Expect = 0.008
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 147 LDR----GIPYRRGYLLYGPPGCGKSSF 170
+D GIP R LL G PG GK+ F
Sbjct: 12 VDEILHGGIPERNVVLLSGGPGTGKTIF 39
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 35.6 bits (82), Expect = 0.008
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
Query: 147 LDR----GIPYRRGYLLYGPPGCGKSSF 170
D G P LL G G GK++F
Sbjct: 19 FDELIEGGFPEGTTVLLTGGTGTGKTTF 46
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 323
Score = 35.8 bits (83), Expect = 0.009
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 21/84 (25%)
Query: 117 RP--LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITAL 174
RP L+ +V + + ++Q D +P+ ++ G PG GK++ + L
Sbjct: 16 RPQVLSDIVGN----KETIDRLQQIAKD------GNMPH---MIISGMPGIGKTTSVHCL 62
Query: 175 AGEL---EFGICVLNLS---ERGL 192
A EL + VL L+ +RG+
Sbjct: 63 AHELLGRSYADGVLELNASDDRGI 86
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 35.8 bits (83), Expect = 0.010
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Query: 161 GPPGCGKSSFITALAG--ELEFGICV--LNLSERGLTDDRLNHLLSVAPQNSII 210
G G GKS+ ++A E I + ++ L R V PQ I
Sbjct: 54 GRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKA--FGVIPQKVFI 105
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Length = 235
Score = 35.4 bits (82), Expect = 0.010
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 147 LDR----GIPYRRGYLLYGPPGCGKSSF 170
D+ GIP L G PG GK+ F
Sbjct: 12 FDKLIQGGIPQGFFIALTGEPGTGKTIF 39
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo
sapiens} PDB: 2xsz_A*
Length = 456
Score = 35.7 bits (82), Expect = 0.010
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 155 RGYLLYGPPGCGKSSFITALAGEL--EFGICVLNLSE 189
R LL GPPG GK++ A+A EL + C + SE
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSE 100
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 34.8 bits (80), Expect = 0.012
Identities = 12/89 (13%), Positives = 25/89 (28%), Gaps = 5/89 (5%)
Query: 157 YLLYGPPGCGKSSFITALAGELEFGICVLNLSE--RGLTDDRLNHLLSVAPQNSIILLED 214
L G PG GKS++ + G +N + + + + I+
Sbjct: 5 ILTIGCPGSGKSTWAREFIAKNP-GFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGM 63
Query: 215 IDAAFVTREESSQGLED--IDAAFVTREE 241
+ ++ I + E
Sbjct: 64 QFDTAKSILYGGDSVKGVIISDTNLNPER 92
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding; HET:
DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 34.3 bits (79), Expect = 0.016
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Query: 119 LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 178
L++ + +R L I+ FV + + + G +G G PG GK+ A +
Sbjct: 9 LDTYHPKNVSQNRALLTIRVFVHN--FNPEEG----KGLTFVGSPGVGKTHLAVATLKAI 62
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+
protein; 2.10A {Human papillomavirus type 18} SCOP:
c.37.1.20
Length = 212
Score = 34.0 bits (78), Expect = 0.024
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 133 LTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITAL 174
L +K F+ +G P + + GP GKS F +
Sbjct: 45 LGALKSFL--------KGTPKKNCLVFCGPANTGKSYFGMSF 78
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 34.1 bits (79), Expect = 0.025
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 154 RRGYLL--YGPPGCGKSSFITALAGELE 179
G L+ G GCGKSS ++AL E++
Sbjct: 29 PEGALVAVVGQVGCGKSSLLSALLAEMD 56
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 354
Score = 34.1 bits (78), Expect = 0.028
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 14/64 (21%)
Query: 117 RP--LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITAL 174
RP LN++ + + + + K R +P+ LLYGP G GK + AL
Sbjct: 9 RPKSLNALSHNEELTNFL----KSLSDQ-----PRDLPH---LLLYGPNGTGKKTRCMAL 56
Query: 175 AGEL 178
+
Sbjct: 57 LESI 60
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 34.2 bits (79), Expect = 0.030
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 161 GPPGCGKSSFITALAGELE 179
G G GK+S + + GELE
Sbjct: 71 GSTGAGKTSLLMMIMGELE 89
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 33.7 bits (78), Expect = 0.032
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 161 GPPGCGKSSFITALAGELE 179
G G GK+S + + GELE
Sbjct: 41 GSTGAGKTSLLMMIMGELE 59
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.039
Identities = 44/241 (18%), Positives = 64/241 (26%), Gaps = 80/241 (33%)
Query: 3 FMELI-DSLSTNPYFGAGFGLFGLGAGAAILRKGKFRPGRESLPPPNVSMPFMELID--- 58
ELI +L F G + L P ++ L +S P + +I
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEW------LENPSNTPDKDYLLSIPISCPLIGVIQLAH 248
Query: 59 ------SLSTNP--YFGAGFGLFGLGAG--AAILRKARTLALKQYEGKTVMYTALGSEWR 108
L P G G G A+ A W
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA------------------IAETDSWE 290
Query: 109 PFGHPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKS 168
F SV A +L I G+ R Y Y P
Sbjct: 291 SF--------FVSVRK----AITVLFFI-------------GV---RCYEAY--PNTSLP 320
Query: 169 SFITALAGELEFGI-----CVLNLSERGLTD--DRLNHLLSVAPQNSIILLEDIDAA--F 219
I + E G+ + NL++ + D ++ N L Q I L ++ A
Sbjct: 321 PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL---VNGAKNL 377
Query: 220 V 220
V
Sbjct: 378 V 378
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta
domain, C-terminal helix, ATP-binding, E
nucleotide-binding; 2.90A {Saccharomyces cerevisiae}
PDB: 2qpa_A*
Length = 355
Score = 33.7 bits (77), Expect = 0.044
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 17/83 (20%)
Query: 155 RGYLLYGPPGCGKSSFITALAGELE---FGICVLNL-------SERGLTDDRLNHLLSVA 204
G LLYGPPG GKS A+A E F + +L SE+ + L ++A
Sbjct: 85 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQ-----LFAMA 139
Query: 205 PQN--SIILLEDIDAAFVTREES 225
+N SII ++ +DA TR E
Sbjct: 140 RENKPSIIFIDQVDALTGTRGEG 162
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 33.2 bits (75), Expect = 0.044
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 158 LLYGPPGCGKSSFITALAGELEFGICVLNLSE 189
L+ G PG GK+S +A EL+ G L + +
Sbjct: 14 LITGTPGTGKTSMAEMIAAELD-GFQHLEVGK 44
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding
motif, ATP- binding, nucleotide-binding, transferase;
HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB:
3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Length = 260
Score = 33.3 bits (76), Expect = 0.048
Identities = 17/81 (20%), Positives = 25/81 (30%), Gaps = 18/81 (22%)
Query: 158 LLYGPPGCGKSSFITALAGELE---FGICVLNL------------SERGLTDDRLNHLLS 202
+L G PG GKS+F LA L + VL L+
Sbjct: 8 ILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRLID 67
Query: 203 VAPQNSIILLEDIDAAFVTRE 223
A +N ++ +D
Sbjct: 68 SALKNYWVI---VDDTNYYNS 85
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 32.7 bits (74), Expect = 0.054
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 158 LLYGPPGCGKSSFITALAGELEFGICVLNLSE 189
LL G PG GK++ LA + G+ +N+ +
Sbjct: 15 LLTGTPGVGKTTLGKELASKS--GLKYINVGD 44
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 33.4 bits (76), Expect = 0.058
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 155 RGYLLYGPPGCGKSSFITALA 175
RG LL+GPPG GKS A+A
Sbjct: 168 RGILLFGPPGTGKSYLAKAVA 188
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10
PDB: 2qm7_A*
Length = 337
Score = 32.8 bits (75), Expect = 0.078
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 161 GPPGCGKSSFITALAGEL 178
G PG GKS+ I AL L
Sbjct: 62 GVPGVGKSTTIDALGSLL 79
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein
structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 32.9 bits (75), Expect = 0.078
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 161 GPPGCGKSSFITALAGEL 178
G PG GKS+F+ A L
Sbjct: 63 GTPGAGKSTFLEAFGMLL 80
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 32.9 bits (75), Expect = 0.088
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 161 GPPGCGKSSFITALAGEL 178
G PG GKS+ I AL L
Sbjct: 86 GVPGVGKSTAIEALGMHL 103
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 32.5 bits (74), Expect = 0.093
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 161 GPPGCGKSSFITALAGEL 178
GPPG GKS+FI L
Sbjct: 81 GPPGAGKSTFIEYFGKML 98
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 32.6 bits (73), Expect = 0.095
Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 9/71 (12%)
Query: 157 YLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRLNHLLSVAPQNSIILLEDID 216
LL G G GK++ E + I +++ D + D
Sbjct: 35 ILLGGQSGAGKTTIHRIKQKEFQGNIVIID-------GDSFRSQHPHY--LELQQEYGKD 85
Query: 217 AAFVTREESSQ 227
+ T++ + +
Sbjct: 86 SVEYTKDFAGK 96
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp
loader, sliding clamp, primer-TEM DNA, DNA binding
protein-DNA complex; HET: DNA ADP 08T; 3.20A
{Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Length = 324
Score = 32.3 bits (74), Expect = 0.11
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 16/79 (20%)
Query: 117 RP--LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGP-PGCGKSSFITA 173
RP ++ +L K + IP+ +L+ P PG GK++ A
Sbjct: 21 RPSTIDECILP----AFDKETFKSITSKGK------IPH---IILHSPSPGTGKTTVAKA 67
Query: 174 LAGELEFGICVLNLSERGL 192
L ++ + +N S+ +
Sbjct: 68 LCHDVNADMMFVNGSDCKI 86
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 32.6 bits (74), Expect = 0.12
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 145 WYLDRGIPYRRGYLLYGPPGCGKSSFIT-ALAGELEFGICVLNLS 188
L + R +L GPPG GK+ +T L +F + LN S
Sbjct: 1295 DVLHAWLSEHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFS 1339
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 31.9 bits (72), Expect = 0.12
Identities = 5/9 (55%), Positives = 6/9 (66%)
Query: 104 GSEWRPFGH 112
SEWR F +
Sbjct: 60 RSEWRTFSN 68
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia
coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E*
1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Length = 334
Score = 32.0 bits (73), Expect = 0.13
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 156 GYLLYGPPGCGKSSFITALA 175
L+ PG G + I AL+
Sbjct: 26 ALLIQALPGMGDDALIYALS 45
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 32.5 bits (74), Expect = 0.14
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 145 WYLDRGIPYRRGYLLYGPPGCGKSSFIT-ALAGELEFGICVLNLS 188
+ +RG +L GPPG GK+ + AL + + +N S
Sbjct: 1258 KIFYDLLNSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFS 1302
Score = 29.0 bits (65), Expect = 1.6
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 154 RRGYLLYGPPGCGKSSFITALAGELE 179
++ +L G GCGK++ + +
Sbjct: 923 QQALILVGKAGCGKTATWKTVIDAMA 948
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 32.1 bits (72), Expect = 0.17
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 158 LLYGPPGCGKSSFITALA 175
L+ G PGCGK+ I +
Sbjct: 165 LVDGVPGCGKTKEILSRV 182
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 32.0 bits (72), Expect = 0.18
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 158 LLYGPPGCGKSSFITALAGELE 179
+YG G GK++ + + +L
Sbjct: 49 FIYGLTGTGKTAVVKFVLSKLH 70
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 31.3 bits (70), Expect = 0.25
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 158 LLYGPPGCGKSSFITALAGELE 179
L G G GK+ + E+E
Sbjct: 49 LFLGLTGTGKTFVSKYIFNEIE 70
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 30.7 bits (69), Expect = 0.28
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 157 YLLYGPPGCGKSSFITALAGELE 179
Y++ GP G GKS+ LA +L+
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLD 27
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding
protein, ring protein, octamer, AAA ATPase; 3.20A {Homo
sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Length = 343
Score = 31.0 bits (70), Expect = 0.34
Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 11/94 (11%)
Query: 147 LDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF--------GICVLNLSERGLTDDRLN 198
L GI +G GK+ L + G + +E DRL
Sbjct: 115 LGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR 174
Query: 199 HLLSVAPQNSIILLEDIDAAFVTREESSQGLEDI 232
+ + +L+++ R +S+ ++
Sbjct: 175 DIADRFNVDHDAVLDNV---LYARAYTSEHQMEL 205
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 30.8 bits (70), Expect = 0.39
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 147 LDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 178
+ +R LL G PG GKS A+A L
Sbjct: 53 IKTAANQKRHVLLIGEPGTGKSMLGQAMAELL 84
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid
herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A*
1p75_A*
Length = 334
Score = 30.9 bits (69), Expect = 0.39
Identities = 11/42 (26%), Positives = 14/42 (33%), Gaps = 2/42 (4%)
Query: 150 GIPYRRGYLLY--GPPGCGKSSFITALAGELEFGICVLNLSE 189
G +Y G G GKS+ +A G L E
Sbjct: 1 GSHMVTIVRIYLDGVYGIGKSTTGRVMASAASGGSPTLYFPE 42
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 30.5 bits (68), Expect = 0.41
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 158 LLYGPPGCGKSSFITALAGELE 179
L G PG GK+ + L +
Sbjct: 48 TLLGRPGTGKTVTLRKLWELYK 69
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 30.4 bits (68), Expect = 0.46
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 161 GPPGCGKSSFITALAGELEFG--ICVLNL 187
G G GK++ LE + +NL
Sbjct: 21 GTAGSGKTTLTGEFGRYLEDNYKVAYVNL 49
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 30.8 bits (69), Expect = 0.49
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 137 KQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGI 182
K + L R RR Y + GP GCGKS+ + A+A G
Sbjct: 448 KILLNKTQLRLKRA---RR-YGICGPNGCGKSTLMRAIANGQVDGF 489
Score = 30.4 bits (68), Expect = 0.69
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 159 LYGPPGCGKSSFITALAGELE 179
+ GP G GKS+ I L GEL
Sbjct: 704 VIGPNGAGKSTLINVLTGELL 724
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 29.7 bits (67), Expect = 0.51
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 161 GPPGCGKSSFITALAGELEF 180
GP C KS+ L+ EL++
Sbjct: 8 GPDCCFKSTVAAKLSKELKY 27
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural
genomics, APC84050.2, PS protein structure initiative;
HET: MSE; 1.82A {Neisseria meningitidis MC58}
Length = 199
Score = 29.7 bits (66), Expect = 0.60
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 157 YLLYGPPGCGKSSF 170
L+ G PG GK+
Sbjct: 8 CLITGTPGSGKTLK 21
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 29.9 bits (67), Expect = 0.61
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 158 LLYGPPGCGKSSFITALAGELEF 180
L+ G G GKSS + ++ GE
Sbjct: 43 LVMGKGGVGKSSTVNSIIGERVV 65
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide,
hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP:
a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Length = 324
Score = 30.2 bits (69), Expect = 0.62
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 158 LLYGPPGCGKSSFITALAGELEFGI 182
LL+GPPG GK++ +A EL +
Sbjct: 42 LLFGPPGLGKTTLAHVIAHELGVNL 66
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 30.0 bits (66), Expect = 0.66
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 157 YLLYGPPGCGKSSFITALAGELEFGICVLN 186
+LL G PG GK+S +A+ E + + V++
Sbjct: 36 FLLGGQPGSGKTSLRSAIFEETQGNVIVID 65
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 30.0 bits (67), Expect = 0.67
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 158 LLYGPPGCGKSSFITALAGELEF 180
+L G G GKS+ ++ G F
Sbjct: 33 VLVGKTGAGKSATGNSILGRKVF 55
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase,
winged-helix domain, ATP hydrolysis, walker A, walker B,
sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga
maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A*
1in8_A* 1in7_A* 1j7k_A*
Length = 334
Score = 29.8 bits (68), Expect = 0.68
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 158 LLYGPPGCGKSSFITALAGELEFGI 182
LL GPPG GK++ +A EL+ I
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNI 79
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable
holliday junction DNA helicase; HET: ADP; 2.69A
{Campylobacter jejuni subsp}
Length = 338
Score = 29.8 bits (68), Expect = 0.78
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 158 LLYGPPGCGKSSFITALAGELEFGI 182
L GP G GK++ ++ E+ I
Sbjct: 59 LFSGPAGLGKTTLANIISYEMSANI 83
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 29.1 bits (65), Expect = 0.89
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 158 LLYGPPGCGKSSFITALAGELEF 180
++ G P GK++ ALA L
Sbjct: 9 IVTGHPATGKTTLSQALATGLRL 31
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 29.0 bits (64), Expect = 1.0
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 158 LLYGPPGCGKSSFITALAGELE 179
+L G GKS + L L
Sbjct: 7 ILNGGSSAGKSGIVRCLQSVLP 28
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 28.8 bits (64), Expect = 1.1
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 158 LLYGPPGCGKSSFITALAGELEFGIC 183
++ G PG GK++ + + L
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAI 29
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family,
cofactor-binding DO cysteine biosynthesis; 2.80A
{Escherichia coli K12} SCOP: c.94.1.1
Length = 228
Score = 28.8 bits (65), Expect = 1.3
Identities = 23/77 (29%), Positives = 29/77 (37%), Gaps = 18/77 (23%)
Query: 174 LAGELEFGICVLNLSERGLTDDRL--------NHLLSVAP-----QNSIILLEDI-DAAF 219
GE + GI SER D +L +H L V Q S + LE I
Sbjct: 60 QNGEADIGIA----SERLSNDPQLVAFPWFRWHHSLLVPHDHPLTQISPLTLESIAKWPL 115
Query: 220 VTREESSQGLEDIDAAF 236
+T + G ID AF
Sbjct: 116 ITYRQGITGRSRIDDAF 132
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus}
SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 29.3 bits (65), Expect = 1.3
Identities = 11/37 (29%), Positives = 14/37 (37%)
Query: 153 YRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE 189
L+ G GKSS I EL L+L +
Sbjct: 29 RAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 28.9 bits (64), Expect = 1.3
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 157 YLLYGPPGCGKSSFITALAGEL 178
LL G PG GKS+ ALA
Sbjct: 12 LLLSGHPGSGKSTIAEALANLP 33
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 28.7 bits (65), Expect = 1.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 159 LYGPPGCGKSSFITALAGEL 178
L GP G GKS+ + +AG
Sbjct: 31 LVGPNGAGKSTLLARMAGMT 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 29.2 bits (66), Expect = 1.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 161 GPPGCGKSSFITALAGELE 179
GP G GK++F L GE+
Sbjct: 301 GPNGIGKTTFARILVGEIT 319
Score = 28.8 bits (65), Expect = 1.6
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 158 LLYGPPGCGKSSFITALAGEL--EFGICVLNLSERGLTDDRLNHL 200
+ G G GK++ + LAGE+ FG + + + D+ L
Sbjct: 29 GVLGKNGVGKTTVLKILAGEIIPNFG----DPNSKVGKDEVLKRF 69
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure
initiati YORK structural genomics research consortium,
nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 28.5 bits (63), Expect = 1.5
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 158 LLYGPPGCGKSSFITALAGEL 178
++ G G GKSS A+A
Sbjct: 22 VVMGVSGSGKSSVGEAIAEAC 42
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB:
3h0k_A
Length = 179
Score = 28.3 bits (63), Expect = 1.5
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 158 LLYGPPGCGKSSFITALAGELEFGICVLNLSE 189
L+ G PG GKS F L E G V+ +S+
Sbjct: 5 LITGMPGSGKSEFAKLLK---ERGAKVIVMSD 33
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein,
calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides}
PDB: 3syk_A 3zuh_A*
Length = 309
Score = 28.6 bits (63), Expect = 1.7
Identities = 19/116 (16%), Positives = 36/116 (31%), Gaps = 16/116 (13%)
Query: 133 LTDIKQFVADPAWYLDRGI---PYRRGYLLYGPPGCGKSSFITALA------GELEFGIC 183
+ + + G+ G PG GK++ +A G + G
Sbjct: 43 IRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHL 102
Query: 184 V------LNLSERGLTDDRLNHLLSVAPQNSIILLEDIDAAFVTREESSQGLEDID 233
V L G T + +L A ++ +++ + E G E I+
Sbjct: 103 VSVTRDDLVGQYIGHTAPKTKEVLKRA-MGGVLFIDEAYYLYRPDNERDYGQEAIE 157
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 28.1 bits (62), Expect = 1.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 157 YLLYGPPGCGKSSFITALAGELEF 180
Y+L G G GKS+ + +A +L
Sbjct: 11 YVLMGVSGSGKSAVASEVAHQLHA 34
>3pvs_A Replication-associated recombination protein A; maintenance of
genome stability Pro recombination; 2.50A {Escherichia
coli}
Length = 447
Score = 28.7 bits (65), Expect = 1.9
Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 4/18 (22%)
Query: 158 LLYGPPGCGKSSFITALA 175
+L+GPPG GK T LA
Sbjct: 54 ILWGPPGTGK----TTLA 67
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 28.5 bits (63), Expect = 2.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 159 LYGPPGCGKSSFITALAGE 177
+ G G GKSSFI L G
Sbjct: 74 VTGETGSGKSSFINTLRGI 92
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 28.4 bits (64), Expect = 2.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 161 GPPGCGKSSFITALAGELE 179
GP G GK++F+ LAG E
Sbjct: 389 GPNGIGKTTFVKMLAGVEE 407
Score = 27.7 bits (62), Expect = 4.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 161 GPPGCGKSSFITALAGEL 178
GP G GK++ + LAG+L
Sbjct: 124 GPNGTGKTTAVKILAGQL 141
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 28.4 bits (62), Expect = 2.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 158 LLYGPPGCGKSSFITALAGE 177
L+ G GKS+F+ AL GE
Sbjct: 73 LVLGDMKRGKSTFLNALIGE 92
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 27.6 bits (61), Expect = 2.7
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 161 GPPGCGKSSFITALAGELEF 180
G G GKS+ ++ +L +
Sbjct: 7 GTVGAGKSTISAEISKKLGY 26
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold,
hydro; HET: ADP; 2.91A {Escherichia coli}
Length = 500
Score = 28.2 bits (63), Expect = 2.8
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 158 LLYGPPGCGKSSFITALAGELE 179
L GPPG KS L +
Sbjct: 45 FLLGPPGIAKSLIARRLKFAFQ 66
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 28.3 bits (63), Expect = 3.1
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 159 LYGPPGCGKSSFITALA 175
+YG GCGKS
Sbjct: 152 IYGMAGCGKSVLAAEAV 168
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A
{Novosphingobium aromaticivorans}
Length = 415
Score = 27.9 bits (63), Expect = 3.2
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 13/82 (15%)
Query: 76 GAGAAILRKARTLALKQYEGKTVMYTALGSEWRPFGHPKRRRPLN-SVVLDSGVADRILT 134
GAG + A L +EG+ ++ +G E P R PL+ + +RI
Sbjct: 16 GAGHGGAQAAIALRQNGFEGRVLV---IGREPEI---PYERPPLSKEYLAREKTFERI-- 67
Query: 135 DIKQFVADPAWYLDRGIPYRRG 156
+ ++ D+ + + G
Sbjct: 68 ----CIRPAQFWEDKAVEMKLG 85
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 27.8 bits (61), Expect = 3.3
Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 7/94 (7%)
Query: 146 YLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE--FGICVLNLSERGLTD-----DRLN 198
L+ + LL G GKSS + A E C +ERG L
Sbjct: 23 KLEESLENYPLTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITREELIKELQ 82
Query: 199 HLLSVAPQNSIILLEDIDAAFVTREESSQGLEDI 232
+S + ++ F+T E L ++
Sbjct: 83 STISPFQKFQSKFKISLNLKFLTLEPRKLSLREV 116
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 27.8 bits (61), Expect = 3.4
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 161 GPPGCGKSSFITALAGELE 179
G GKS+F+ L
Sbjct: 9 GNIAVGKSTFVKLLTKTYP 27
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 28.1 bits (63), Expect = 3.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 161 GPPGCGKSSFITALAGELE 179
G G GK++ I LAG L+
Sbjct: 385 GENGTGKTTLIKLLAGALK 403
Score = 27.3 bits (61), Expect = 5.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 158 LLYGPPGCGKSSFITALAGEL 178
L G G GKS+ + LAG+
Sbjct: 107 GLVGTNGIGKSTALKILAGKQ 127
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 27.3 bits (60), Expect = 3.5
Identities = 13/96 (13%), Positives = 23/96 (23%), Gaps = 14/96 (14%)
Query: 158 LLYGPPGCGKSSFITALAGELE---FGICVLNLS--------ERGLTDDRLNHLLSVAPQ 206
++ G PG G ++ L +++ E L DR
Sbjct: 7 VVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPET 66
Query: 207 NSIILLEDIDAAFVTREESSQGLEDIDAAFVTREES 242
I A E + + +D
Sbjct: 67 QKRIQKM---AGRKIAEMAKESPVAVDTHSTVSTPK 99
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 28.0 bits (63), Expect = 3.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 161 GPPGCGKSSFITALAGELE 179
GP G GK++F+ LAG E
Sbjct: 319 GPNGIGKTTFVKMLAGVEE 337
Score = 26.9 bits (60), Expect = 6.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 158 LLYGPPGCGKSSFITALAGEL 178
+ GP G GKS+ + LAG+L
Sbjct: 51 GIVGPNGTGKSTAVKILAGQL 71
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B*
2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A*
2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A*
2zi7_B* 2zia_A* 3kfx_A* ...
Length = 263
Score = 27.5 bits (60), Expect = 3.8
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 161 GPPGCGKSSFITALAGELE 179
G GKS+F+ L E
Sbjct: 31 GNIAAGKSTFVNILKQLCE 49
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function
initiative, EFI, STRU genomics, transferase; 1.60A
{Janibacter SP}
Length = 200
Score = 27.4 bits (60), Expect = 4.2
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 158 LLYGPPGCGKSSFITALAGELEF 180
++ G G GK++ +A E
Sbjct: 33 VVMGVSGSGKTTIAHGVADETGL 55
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 27.0 bits (59), Expect = 4.3
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 158 LLYGPPGCGKSSFITALAGELE 179
L GPPG GK++ I + L+
Sbjct: 5 FLTGPPGVGKTTLIHKASEVLK 26
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus,
glycoprotein, membran structural genomics, PSI-2,
protein structure initiative; HET: BOG; 2.10A {Homo
sapiens}
Length = 490
Score = 27.5 bits (61), Expect = 4.4
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 6/41 (14%)
Query: 16 FGAGFGLFGLGAGAAIL--RKGKFRPGRESLPPPNVSMPFM 54
FGA FGL IL R + R++ + +
Sbjct: 192 FGAYFGL----TVTRILYRRNLEQSKERQNSVYQSDLFAMI 228
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA
damage, DNA recombinat repair, nucleotide-binding; HET:
DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Length = 400
Score = 27.4 bits (60), Expect = 4.8
Identities = 16/94 (17%), Positives = 28/94 (29%), Gaps = 11/94 (11%)
Query: 147 LDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF--------GICVLNLSERGLTDDRLN 198
L G+ L+G GKS LA + G C+ +E RL
Sbjct: 171 LGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV 230
Query: 199 HLLSVAPQNSIILLEDIDAAFVTREESSQGLEDI 232
+ + L ++ R ++ +
Sbjct: 231 SIAQRFGLDPDDALNNV---AYARAYNADHQLRL 261
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 27.0 bits (59), Expect = 4.9
Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 11/96 (11%)
Query: 158 LLYGPPGCGKSSFITALAGELE----------FGICVLNL-SERGLTDDRLNHLLSVAPQ 206
++ G PG GKS+ + + L+ +G +L + G DR +
Sbjct: 5 IVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEK 64
Query: 207 NSIILLEDIDAAFVTREESSQGLEDIDAAFVTREES 242
+ ++ +G ID V R S
Sbjct: 65 QKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPS 100
>1q1r_A Putidaredoxin reductase; glutathione reductase fold,
oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 27.2 bits (61), Expect = 4.9
Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 13/82 (15%)
Query: 76 GAGAAILRKARTLALKQYEGKTVMYTALGSEWRPFGHPKRRRPLN-SVVLDSGVADRILT 134
G G A + A L +EG + +G P PL+ + + A+ +
Sbjct: 11 GTGLAGVEVAFGLRASGWEGNIRL---VGDATVI---PHHLPPLSKAYLAGKATAESL-- 62
Query: 135 DIKQFVADPAWYLDRGIPYRRG 156
++ P Y + I G
Sbjct: 63 ----YLRTPDAYAAQNIQLLGG 80
>2ccj_A DTMP kinase, thymidylate kinase; transferase, nucleotide
biosynthesis, TMP-binding, ATP-binding; HET: TMP; 1.7A
{Staphylococcus aureus} PDB: 2cck_A 2ccg_A*
Length = 205
Score = 27.2 bits (61), Expect = 4.9
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 161 GPPGCGKSSFITALAGELEFGICVLNLSERG 191
GP G GK++ I + L V+ E G
Sbjct: 9 GPEGSGKTTVINEVYHRLVKDYDVIMTREPG 39
>2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase,
acyltransferase, lipid synthesis, multifun enzyme; 1.81A
{Pseudomonas aeruginosa}
Length = 331
Score = 27.1 bits (61), Expect = 5.0
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Query: 72 LFGLGAGAAILRKARTLALKQYEGKTVMYTALGS 105
LFG GAGA +LR A E ++ LGS
Sbjct: 156 LFGDGAGAVVLR-----AGDAEEEGALLAFDLGS 184
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, MTBI,
transferase; HET: ATM; 1.85A {Staphylococcus aureus
subsp} PDB: 4dwj_A* 4f4i_A
Length = 229
Score = 26.8 bits (60), Expect = 5.1
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 161 GPPGCGKSSFITALAGELEFGICVLNLSERG 191
GP G GK++ I + L V+ E G
Sbjct: 33 GPEGSGKTTVINEVYHRLVKDYDVIMTREPG 63
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD,
hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A*
2gk7_A 2xzo_A* 2xzp_A
Length = 624
Score = 27.1 bits (60), Expect = 5.9
Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 11/89 (12%)
Query: 99 MYTALGSEWRPFGHPKRRRPLNSVVLDSGVADRIL--TDIKQFVADPAWYLD-------R 149
M +AL + + +L V D I+ K+F A L+ +
Sbjct: 133 MQSALKTFAVD--ETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVK 190
Query: 150 GIPYRRGYLLYGPPGCGKSSFITALAGEL 178
+ R L+ GPPG GK+ + L
Sbjct: 191 TVLQRPLSLIQGPPGTGKTVTSATIVYHL 219
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 26.8 bits (60), Expect = 5.9
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 159 LYGPPGCGKSSFITALAGEL 178
LYG G GK++ + L
Sbjct: 52 LYGLNGAGKTTLLNILNAYE 71
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD
binding protein, NADH binding protein, aromatic hydrocar
catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida}
Length = 410
Score = 27.1 bits (61), Expect = 6.5
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 14/82 (17%)
Query: 76 GAGAAILRKARTLALKQYEGKTVMYTALGSEWRPFGHPKRRRPLN-SVVLDSGVADRILT 134
G G A+ L + +EG+ + +G E P R L+ +V+ S IL
Sbjct: 9 GNGVGGFTTAQALRAEGFEGRISL---IGDEPHL---PYDRPSLSKAVLDGSLERPPIL- 61
Query: 135 DIKQFVADPAWYLDRGIPYRRG 156
A+ WY + I G
Sbjct: 62 ------AEADWYGEARIDMLTG 77
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop,
rossman fold, AAA+, photosynthesis, metal transport;
2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB:
2x31_G
Length = 350
Score = 27.0 bits (60), Expect = 6.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 156 GYLLYGPPGCGKSSFITALAG 176
G L++G G GKS+ + ALA
Sbjct: 47 GVLVFGDRGTGKSTAVRALAA 67
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 26.5 bits (59), Expect = 6.6
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 161 GPPGCGKSSFITALAGEL-EFGICVLNLS 188
G GK++ L+ L E GI V
Sbjct: 29 GLSRSGKTTLANQLSQTLREQGISVCVFH 57
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 26.9 bits (59), Expect = 6.9
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 154 RRGYLLYGPPGCGKSSFITALAGELE 179
+ + GP G G ++ + L
Sbjct: 45 KHHVTINGPAGTGATTLTKFIIEALI 70
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 26.9 bits (60), Expect = 7.2
Identities = 9/21 (42%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 159 LYGPPGCGKSSFITALAGELE 179
+ GP G GK++F+ +AG L+
Sbjct: 36 ILGPSGAGKTTFMRIIAG-LD 55
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 26.4 bits (59), Expect = 7.2
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 161 GPPGCGKSSFITALAGEL--EFGICVL 185
G G GK+ I L L ++ I +
Sbjct: 45 GAIGSGKTLLIEKLIDNLKDKYKIACI 71
>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent,
NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET:
NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB:
2aw5_A
Length = 555
Score = 26.9 bits (60), Expect = 7.3
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 19/63 (30%)
Query: 94 EGKTVMYTALGSEWRPFG-HPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIP 152
GK +YTA G G P + P V+LD G TD + + DP Y+ G+
Sbjct: 159 VGKLALYTACG------GVKPHQCLP---VMLDVG------TDNETLLKDP-LYI--GLR 200
Query: 153 YRR 155
++R
Sbjct: 201 HKR 203
>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA,
transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa
PAO1} PDB: 3h76_A 3h77_A*
Length = 359
Score = 26.8 bits (60), Expect = 7.5
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 6/35 (17%)
Query: 72 LFGLGAGAAILRKARTLALKQYEGKTVMYTALGSE 106
L G GAGA ++ + ++ LG++
Sbjct: 181 LLGDGAGAVVVSAGES------LEDGLLDLRLGAD 209
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 26.6 bits (58), Expect = 7.7
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 153 YRRGYLLYGPPGCGKSSFITALAGEL 178
YR +L G PG GKS+ L +
Sbjct: 23 YRVCVILVGSPGSGKSTIAEELCQII 48
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 26.8 bits (59), Expect = 7.7
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 5/30 (16%)
Query: 150 GIPYRRGY-----LLYGPPGCGKSSFITAL 174
G+P R L+ G G GKS + L
Sbjct: 44 GVPMPRDAEPRHLLVNGATGTGKSVLLREL 73
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 26.4 bits (59), Expect = 7.7
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 2/27 (7%)
Query: 161 GPPGCGKSSFITALAGEL--EFGICVL 185
G G GK+ I + E I +
Sbjct: 37 GAIGSGKTLLIERTIERIGNEVKIGAM 63
>4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle
structural genomics center for infectious DI
transferase; 2.35A {Burkholderia xenovorans}
Length = 333
Score = 26.7 bits (60), Expect = 8.1
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 8/35 (22%)
Query: 72 LFGLGAGAAILRKARTLALKQYEGKTVMYTALGSE 106
LFG GAGA IL+ + + V+ +AL ++
Sbjct: 171 LFGDGAGAVILQAS--------DEPGVLASALHAD 197
>4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.35A {Burkholderia xenovorans}
Length = 354
Score = 26.7 bits (60), Expect = 8.2
Identities = 6/34 (17%), Positives = 10/34 (29%), Gaps = 8/34 (23%)
Query: 72 LFGLGAGAAILRKARTLALKQYEGKTVMYTALGS 105
LFG L + G + +G+
Sbjct: 172 LFGDAGTMTALETS--------NGDAAAHFIIGA 197
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein,
feedback inhibition, deoxyribonucleoside kinase, salvage
pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP:
c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A*
2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A*
1zm7_A* 1zmx_A*
Length = 230
Score = 26.6 bits (58), Expect = 8.2
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 161 GPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRLNHLL 201
G G GK++++ IC+L + +LL
Sbjct: 27 GNIGSGKTTYLNHFEKYKN-DICLLTEPVEKWRNVNGVNLL 66
>2v1u_A Cell division control protein 6 homolog; DNA replication,
nucleotide-binding, replication, archaea; HET: ADP;
3.10A {Aeropyrum pernix}
Length = 387
Score = 26.7 bits (58), Expect = 8.7
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 158 LLYGPPGCGKSSFITALAGELE 179
LLYG G GK++ + LE
Sbjct: 48 LLYGLTGTGKTAVARLVLRRLE 69
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 26.4 bits (58), Expect = 8.8
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 154 RRGYLLYGPPGCGKSSFITALAGE 177
+ G GKS+FI + E
Sbjct: 162 GGDVYVVGCTNVGKSTFINRIIEE 185
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 26.4 bits (59), Expect = 8.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 158 LLYGPPGCGKSSFITALAGELE 179
+ G G GKSS + A++ EL
Sbjct: 177 VFAGQSGVGKSSLLNAISPELG 198
>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid
biosynthesis, antibiotic, acyltransferase, cytoplasm,
lipid synthesis; 2.70A {Haemophilus influenzae}
Length = 323
Score = 26.3 bits (59), Expect = 8.9
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 8/35 (22%)
Query: 72 LFGLGAGAAILRKARTLALKQYEGKTVMYTALGSE 106
LFG GAGA IL + E + ++ T L +
Sbjct: 163 LFGDGAGAVILEAS--------EQEGIISTHLHAS 189
>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase;
HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2
c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A*
2eft_A* 2gyo_A* 3il9_A 1ebl_A*
Length = 317
Score = 26.3 bits (59), Expect = 9.0
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 8/35 (22%)
Query: 72 LFGLGAGAAILRKARTLALKQYEGKTVMYTALGSE 106
+FG GAGAA+L + E ++ T L ++
Sbjct: 156 IFGDGAGAAVLAAS--------EEPGIISTHLHAD 182
>3kkw_A Putative uncharacterized protein; acetyltransferase, GNAT family,
structural genomics, PSI, protein structure initiative;
1.41A {Pseudomonas aeruginosa PAO1}
Length = 182
Score = 26.3 bits (58), Expect = 9.0
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 15/58 (25%)
Query: 74 GLGAGAAILRKARTLALKQYEGKTV-------------MYTALGSEWRPFGHPKRRRP 118
GLG ++ LA +QY+ + + +YT LG ++P +R P
Sbjct: 111 GLGVARYLIGVMENLAREQYKARLMKISCFNANAAGLLLYTQLG--YQPRAIAERHDP 166
>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5,
lipid metabolism, structural genomics; 2.10A {Aquifex
aeolicus}
Length = 309
Score = 26.3 bits (59), Expect = 9.1
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 7/35 (20%)
Query: 72 LFGLGAGAAILRKARTLALKQYEGKTVMYTALGSE 106
LFG GAGA ++ ++ + ++ T + +E
Sbjct: 155 LFGDGAGAVVVTRSE-------DKSDILATRMYAE 182
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 26.5 bits (58), Expect = 9.1
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 155 RGYLLYGPPGCGKSSFITALAGEL 178
+ + G GKS+FI + E
Sbjct: 161 KDVYVVGCTNVGKSTFINRMIKEF 184
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 26.0 bits (58), Expect = 9.4
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 161 GPPGCGKSSFITALAGELEFGICVLNL 187
G GK++ ALA L + +L +
Sbjct: 13 GGTASGKTTLAQALARTLGERVALLPM 39
>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase,
oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP:
c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A*
1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*
Length = 564
Score = 26.6 bits (59), Expect = 9.8
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 19/63 (30%)
Query: 94 EGKTVMYTALGSEWRPFG-HPKRRRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIP 152
GK +YTA G P R P V +D G TD + DP +Y+ G+
Sbjct: 161 VGKLCLYTACA------GIRPDRCLP---VCIDVG------TDNIALLKDP-FYM--GLY 202
Query: 153 YRR 155
+R
Sbjct: 203 QKR 205
>2cvh_A DNA repair and recombination protein RADB; filament formation,
homologous recombination, ATPase domain,
hyperthermophIle; HET: DNA; 2.20A {Thermococcus
kodakarensis} PDB: 2cvf_A*
Length = 220
Score = 26.0 bits (58), Expect = 10.0
Identities = 5/11 (45%), Positives = 7/11 (63%)
Query: 158 LLYGPPGCGKS 168
+YGP GK+
Sbjct: 24 QVYGPYASGKT 34
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.141 0.423
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,950,100
Number of extensions: 250792
Number of successful extensions: 944
Number of sequences better than 10.0: 1
Number of HSP's gapped: 937
Number of HSP's successfully gapped: 216
Length of query: 244
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 153
Effective length of database: 4,160,982
Effective search space: 636630246
Effective search space used: 636630246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.8 bits)