RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1371
(244 letters)
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 72.0 bits (176), Expect = 2e-15
Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 15/110 (13%)
Query: 127 GVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLN 186
+ + +K V IP +R +L GP GK++ AL +N
Sbjct: 135 KMDSVVYDFLKCMV--------YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVN 186
Query: 187 LSERGLTDDRLNHLLSVAPQNSIILLEDIDAAFVTREE--SSQGLEDIDA 234
L DRLN L VA +++ ED+ + S QG+ ++D
Sbjct: 187 LP-----LDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDN 231
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 66.4 bits (162), Expect = 1e-13
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 133 LTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE--- 189
+ ++ +++ +P+ + G +G L+ GPPG GK+ A+AGE + ++ S+
Sbjct: 24 VAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83
Query: 190 --RGLTDDRLNHLLSVAPQN--SIILLEDIDAAFVTREESSQGLED 231
G+ R+ + A + II +++IDA R G D
Sbjct: 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHD 129
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 65.6 bits (160), Expect = 2e-13
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Query: 131 RILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE- 189
L +I +F+ +P+ + + G +G LL GPPG GK+ A+AGE + S+
Sbjct: 19 EELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 78
Query: 190 ----RGLTDDRLNHLLSVAPQN--SIILLEDIDAAFVTREESSQGLED 231
G+ R+ L A ++ I+ +++IDA R G D
Sbjct: 79 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGND 126
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 56.6 bits (135), Expect = 3e-10
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 11/115 (9%)
Query: 125 DSGVADRILTDIKQFVA----DPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF 180
D G + L IK+ V PA + G+ RG LLYGPPG GK+ A+A E
Sbjct: 5 DVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 64
Query: 181 GICVLNLSE-------RGLTDDRLNHLLSVAPQNSIILLEDIDAAFVTREESSQG 228
++N E ++ R + +II ++++DA RE++
Sbjct: 65 FFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE 119
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 55.2 bits (132), Expect = 1e-09
Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 7/119 (5%)
Query: 120 NSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE 179
+ V + ++ V P +L G+ +G L YGPPGCGK+ A+A E +
Sbjct: 7 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 66
Query: 180 FGICVLNLSE-----RGLTDDRLNHLLSVA--PQNSIILLEDIDAAFVTREESSQGLED 231
+ E G ++ + + A ++ +++D+ R +
Sbjct: 67 ANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGG 125
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 48.9 bits (116), Expect = 2e-07
Identities = 12/98 (12%), Positives = 29/98 (29%), Gaps = 8/98 (8%)
Query: 142 DPAWYLDRGIPYRRGYLL-YGPPGCGKSSFITALAGELEFGICVLNLS-------ERGLT 193
P G Y G ++ G GK+ + AL L +
Sbjct: 110 SPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDF 169
Query: 194 DDRLNHLLSVAPQNSIILLEDIDAAFVTREESSQGLED 231
+ ++ + Q+ +I+++ + ++
Sbjct: 170 NVFVDDIARAMLQHRVIVIDSLKNVIGAAGGNTTSGGI 207
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 47.3 bits (111), Expect = 5e-07
Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 125 DSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICV 184
D +R+ ++++ + P +LL G PG GK+S +A+ E + + V
Sbjct: 8 DKQFENRLNDNLEELIQGK---KAVESP--TAFLLGGQPGSGKTSLRSAIFEETQGNVIV 62
Query: 185 LNLSE 189
++
Sbjct: 63 IDNDT 67
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 46.0 bits (109), Expect = 9e-07
Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 8/81 (9%)
Query: 135 DIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTD 194
+ F+ +L +G P + + GP GKS F + + V++ +
Sbjct: 35 EFITFLGALKSFL-KGTPKKNCLVFCGPANTGKSYFGMSFIHFI--QGAVIS-----FVN 86
Query: 195 DRLNHLLSVAPQNSIILLEDI 215
+ L + +L+D
Sbjct: 87 STSHFWLEPLTDTKVAMLDDA 107
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 44.8 bits (104), Expect = 3e-06
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 6/73 (8%)
Query: 117 RP--LNSVVLDSGVADRILTDIKQFVADPA----WYLDRGIPYRRGYLLYGPPGCGKSSF 170
P L V + G ++ + + G R +LYGPPG GK++
Sbjct: 9 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTA 68
Query: 171 ITALAGELEFGIC 183
+A EL + I
Sbjct: 69 AHLVAQELGYDIL 81
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 41.5 bits (96), Expect = 3e-05
Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
Query: 130 DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE 189
+R+ ++ ++ A + LL+GPPG GK++ +A EL + V +
Sbjct: 15 ERLKQKLRVYLE--AAKARKEPL--EHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPA 70
Query: 190 RGLTDDRLNHLLSVAPQNSIILLEDIDAAFVTREE 224
D L + + I+ +++I EE
Sbjct: 71 IEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEE 105
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 39.7 bits (91), Expect = 2e-04
Identities = 5/50 (10%), Positives = 11/50 (22%)
Query: 130 DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE 179
+ + + Y G G GK++ +
Sbjct: 22 RGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVS 71
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 39.2 bits (90), Expect = 2e-04
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 116 RRPLNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITA 173
+N ++ R+L D + V DR LL GPP GK++
Sbjct: 5 SYIMNGIIKWGDPVTRVLDDGELLV-QQTKNSDRTPL--VSVLLEGPPHSGKTALAAK 59
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain
{Adeno-associated virus 2, AAV2 [TaxId: 10804]}
Length = 267
Score = 38.4 bits (89), Expect = 4e-04
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Query: 135 DIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSER---- 190
D + + + + R L+GP GK++ A+A + F CV +E
Sbjct: 85 DPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFYGCVNWTNENFPFN 144
Query: 191 GLTDDRLN 198
D +
Sbjct: 145 DCVDKMVI 152
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 36.7 bits (84), Expect = 0.001
Identities = 17/99 (17%), Positives = 30/99 (30%), Gaps = 15/99 (15%)
Query: 147 LDRGIPYRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSE--------------RGL 192
L + + L+ GP G GK+ LA + ++
Sbjct: 43 LRHEVT-PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRD 101
Query: 193 TDDRLNHLLSVAPQNSIILLEDIDAAFVTREESSQGLED 231
D + QN I+ +++ID E S +
Sbjct: 102 LTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSR 140
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 36.1 bits (82), Expect = 0.002
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 131 RILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALA 175
++ T I+ F D G+P R L+ G G GK+ F
Sbjct: 7 KMRTMIEGF--DDI--SHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 35.5 bits (80), Expect = 0.004
Identities = 17/77 (22%), Positives = 23/77 (29%), Gaps = 12/77 (15%)
Query: 131 RILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF--------GI 182
+ T K D L G+ L+G GKS LA + G
Sbjct: 15 CLTTGSKNL--DTL--LGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGK 70
Query: 183 CVLNLSERGLTDDRLNH 199
C+ +E RL
Sbjct: 71 CLYIDTEGTFRPVRLVS 87
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 35.2 bits (79), Expect = 0.005
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 131 RILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALA 175
+I T K+ D L GI ++G GK+ LA
Sbjct: 4 QITTGSKEL--DKL--LQGGIETGSITEMFGEFRTGKTQICHTLA 44
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 34.9 bits (79), Expect = 0.005
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 157 YLLYGPPGCGKSSFITALAGELEFGICVLN 186
LL GPPG GK++ +A EL+ I V +
Sbjct: 38 VLLAGPPGLGKTTLAHIIASELQTNIHVTS 67
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 34.7 bits (78), Expect = 0.006
Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 12/93 (12%)
Query: 131 RILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELEF--------GI 182
RI T K D L GI + ++G G GK+ LA ++ G
Sbjct: 17 RISTGSKSL--DKL--LGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGS 72
Query: 183 CVLNLSERGLTDDRLNHLLSVAPQNSIILLEDI 215
+ +E +R+ + + +L+ I
Sbjct: 73 VIWIDTENTFRPERIREIAQNRGLDPDEVLKHI 105
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 34.7 bits (78), Expect = 0.006
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 157 YLLYGPPGCGKSSFITALA 175
L+ PG G + I AL+
Sbjct: 27 LLIQALPGMGDDALIYALS 45
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 34.3 bits (78), Expect = 0.006
Identities = 4/23 (17%), Positives = 6/23 (26%)
Query: 157 YLLYGPPGCGKSSFITALAGELE 179
L+ G L +E
Sbjct: 18 ILINGEDLSYPREVSLELPEYVE 40
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 34.5 bits (78), Expect = 0.007
Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 4/48 (8%)
Query: 131 RILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 178
R+ + + + D G L G G GK+ ++
Sbjct: 7 RVSSGVVRL--DEM--CGGGFFKDSIILATGATGTGKTLLVSRFVENA 50
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 34.4 bits (77), Expect = 0.008
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 14/64 (21%)
Query: 117 RP--LNSVVLDSGVADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITAL 174
RP LN++ + + + + + Q R +P LLYGP G GK + AL
Sbjct: 6 RPKSLNALSHNEELTNFLKSLSDQ---------PRDLP---HLLLYGPNGTGKKTRCMAL 53
Query: 175 AGEL 178
+
Sbjct: 54 LESI 57
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 33.6 bits (75), Expect = 0.013
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 130 DRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE 179
++ L + + + W + G Y L G PG GK+ + L +
Sbjct: 22 EQQLQQLDILLGN--WLRNPGHHYP-RATLLGRPGTGKTVTLRKLWELYK 68
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 33.5 bits (75), Expect = 0.014
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 157 YLLYGPPGCGKSSFITALAGEL 178
L YGPPG GK+S I AL EL
Sbjct: 36 MLFYGPPGTGKTSTILALTKEL 57
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 33.0 bits (74), Expect = 0.015
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 158 LLYGPPGCGKSSFITALAGELE 179
++ G PG GK++ + + L
Sbjct: 4 IITGEPGVGKTTLVKKIVERLG 25
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 33.5 bits (75), Expect = 0.015
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 4/49 (8%)
Query: 131 RILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALAGELE 179
I T ++F D L GI +G GK+ L +
Sbjct: 18 HITTGSQEF--DKL--LGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQ 62
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 33.1 bits (74), Expect = 0.018
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 4/45 (8%)
Query: 131 RILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCGKSSFITALA 175
++ T + D L G+ + G G GK+ +
Sbjct: 15 KLSTSSSEL--DSV--LGGGLESQSVTEFAGVFGSGKTQIMHQSC 55
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 32.7 bits (73), Expect = 0.019
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 157 YLLYGPPGCGKSSFITALAGELEF 180
Y+L G G GKS+ + +A +L
Sbjct: 9 YVLMGVSGSGKSAVASEVAHQLHA 32
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 32.8 bits (73), Expect = 0.026
Identities = 9/27 (33%), Positives = 10/27 (37%)
Query: 153 YRRGYLLYGPPGCGKSSFITALAGELE 179
L+ G GKSS I EL
Sbjct: 28 RAPITLVLGLRRTGKSSIIKIGINELN 54
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 32.3 bits (72), Expect = 0.030
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 154 RRGYLLYGPPGCGKSSFITALAGELE 179
++ Y++ GP G GKS+ LA +L+
Sbjct: 2 KKLYIITGPAGVGKSTTCKRLAAQLD 27
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 32.6 bits (73), Expect = 0.037
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 152 PYRRGYLLYGPPGCGKSSFITALAGEL 178
P G L++G G GKS+ + ALA L
Sbjct: 26 PGIGGVLVFGDRGTGKSTAVRALAALL 52
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 32.3 bits (72), Expect = 0.042
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 146 YLDRGIPYRRGYLLYGPPGCGKSSFITALA 175
Y+ + L P G GKS LA
Sbjct: 21 YVLPNMVAGTVGALVSPGGAGKSMLALQLA 50
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 231
Score = 31.8 bits (71), Expect = 0.046
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 157 YLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDR 196
L GPPG GK++ ALA EL N E +D+R
Sbjct: 48 LLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDER 87
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 32.0 bits (71), Expect = 0.050
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 147 LDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 178
GI L+ G G GKSS + A+ L
Sbjct: 21 FKEGI-----NLIIGQNGSGKSSLLDAILVGL 47
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 31.5 bits (70), Expect = 0.050
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 158 LLYGPPGCGKSSFITALAGELE 179
L GPPG GK++ I + L+
Sbjct: 5 FLTGPPGVGKTTLIHKASEVLK 26
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 32.1 bits (72), Expect = 0.051
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 158 LLYGPPGCGKSSFITALAGE 177
L+ G G GKSS + ++ GE
Sbjct: 36 LVMGKGGVGKSSTVNSIIGE 55
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 31.6 bits (70), Expect = 0.052
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 158 LLYGPPGCGKSSFITALAGEL 178
+ G GKS + LA
Sbjct: 11 AILGGESSGKSVLVNKLAAVF 31
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 31.2 bits (69), Expect = 0.054
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 154 RRGYLLYGPPGCGKSSFITALAGELEFGICVLN 186
++ L G PG GKS++ + G +N
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKN-PGFYNIN 33
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 31.4 bits (70), Expect = 0.059
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 158 LLYGPPGCGKSSFITALAGELEFGIC 183
+ G PG GKS+FI +
Sbjct: 18 VAVGFPGAGKSTFIQEHLVSAGYVHV 43
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 31.8 bits (72), Expect = 0.060
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 159 LYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRLNHL---LSVAPQNSIIL 211
L GP G GKS+ L + L L + L +L ++ Q +
Sbjct: 45 LVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVF 100
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 31.1 bits (69), Expect = 0.064
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 158 LLYGPPGCGKSSFITALAGELEF 180
LL G PG GK++ LA +
Sbjct: 8 LLTGTPGVGKTTLGKELASKSGL 30
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 31.7 bits (71), Expect = 0.069
Identities = 15/64 (23%), Positives = 20/64 (31%)
Query: 161 GPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRLNHLLSVAPQNSIILLEDIDAAFV 220
G G GKSSFI L G +T +R + P L I +
Sbjct: 63 GETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNF 122
Query: 221 TREE 224
+
Sbjct: 123 PPDT 126
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 31.1 bits (69), Expect = 0.075
Identities = 8/62 (12%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 158 LLYGPPGCGKSSFITALAGELEF-GICVLNLSERGLTDDRLNHLLSVAPQNSIILLEDID 216
++ G PG G ++ L G+ +S + + V+ ++ + ++
Sbjct: 5 VVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPET 64
Query: 217 AA 218
Sbjct: 65 QK 66
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 31.1 bits (69), Expect = 0.075
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 158 LLYGPPGCGKSSFITALAGELEFGICVLNLS 188
LL G PG GKS+ ALA G+ ++
Sbjct: 8 LLSGHPGSGKSTIAEALANLP--GVPKVHFH 36
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 30.9 bits (68), Expect = 0.083
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 159 LYGPPGCGKSSFITALAGE 177
+ G P GKSS + ALAG
Sbjct: 6 IAGRPNAGKSSLLNALAGR 24
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 224
Score = 31.1 bits (69), Expect = 0.098
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 157 YLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDR 196
++ G PG GK++ + LA EL + E +DDR
Sbjct: 39 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR 78
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 30.4 bits (67), Expect = 0.11
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 158 LLYGPPGCGKSSFITALAGELEFGICVLNL 187
+L G GKS + L L +
Sbjct: 7 ILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 30.4 bits (67), Expect = 0.12
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 159 LYGPPGCGKSSFITALAGE 177
G GKS+ I L G+
Sbjct: 5 FAGRSNVGKSTLIYRLTGK 23
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 31.0 bits (69), Expect = 0.12
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 161 GPPGCGKSSFITALAGEL 178
G PG GKS+F+ A L
Sbjct: 61 GTPGAGKSTFLEAFGMLL 78
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 30.5 bits (67), Expect = 0.12
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 159 LYGPPGCGKSSFITALAGE 177
+ G P GKS+ L +
Sbjct: 5 IVGRPNVGKSTLFNKLVKK 23
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 30.4 bits (67), Expect = 0.12
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 158 LLYGPPGCGKSSFITALAGEL 178
L+ G PG GK+S +A EL
Sbjct: 9 LITGTPGTGKTSMAEMIAAEL 29
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 31.0 bits (68), Expect = 0.12
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 158 LLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRLNH 199
L+ G G GKSS + A+ L + L + + D
Sbjct: 27 LIIGQNGSGKSSLLDAILVGL-YW----PLRIKDIKKDEFTK 63
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 209
Score = 30.7 bits (68), Expect = 0.13
Identities = 13/41 (31%), Positives = 14/41 (34%), Gaps = 3/41 (7%)
Query: 154 RRGYL--LYGPPGCGKSSFITALAGELE-FGICVLNLSERG 191
RRG L L G GKS+ L L G L
Sbjct: 1 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPE 41
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 30.4 bits (67), Expect = 0.13
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 158 LLYGPPGCGKSSFITALAGE 177
L+ G G GK++ + L
Sbjct: 9 LILGLDGAGKTTILYRLQVG 28
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 30.4 bits (67), Expect = 0.13
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 158 LLYGPPGCGKSSFITALAGELEF-GICVLNLSE 189
++ G PG GKS+ + + L+ GI ++
Sbjct: 5 IVTGIPGVGKSTVLAKVKEILDNQGINNKIINY 37
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 30.0 bits (66), Expect = 0.14
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 158 LLYGPPGCGKSSFITALAGE 177
L+ G GK++ + GE
Sbjct: 6 LMLGLDNAGKTTILKKFNGE 25
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 30.6 bits (69), Expect = 0.15
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 159 LYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRLNHL 200
L G G GKS+ + + + + + L + L L
Sbjct: 46 LVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASL 87
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 30.4 bits (67), Expect = 0.17
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 158 LLYGPPGCGKSSFITALAGE 177
++ GP GK+S +T L +
Sbjct: 7 IIAGPQNSGKTSLLTLLTTD 26
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 30.1 bits (66), Expect = 0.18
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 154 RRGYLLYGPPGCGKSSFITALAGELEF 180
+R L GP G GKS+ LA +L
Sbjct: 2 KRNIFLVGPMGAGKSTIGRQLAQQLNM 28
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 29.9 bits (66), Expect = 0.18
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 159 LYGPPGCGKSSFITALAGE 177
+ G P GKS+ + L E
Sbjct: 5 IVGKPNVGKSTLLNRLLNE 23
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 30.3 bits (68), Expect = 0.18
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 159 LYGPPGCGKSSFITALAGELE 179
+ G G GK+S + + GELE
Sbjct: 67 ITGSTGSGKTSLLMLILGELE 87
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 29.7 bits (65), Expect = 0.19
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 159 LYGPPGCGKSSFITALAGE 177
+ G P GKS+ + L G+
Sbjct: 10 IVGRPNVGKSTLLNKLLGQ 28
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 29.6 bits (65), Expect = 0.22
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 161 GPPGCGKSSFITALAGEL 178
G GK++ + L L
Sbjct: 9 AWSGTGKTTLLKKLIPAL 26
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
[TaxId: 10331]}
Length = 333
Score = 30.0 bits (67), Expect = 0.24
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 161 GPPGCGKSSFITALAGELEFGICVLNLSE 189
G G GKS+ +A G L E
Sbjct: 13 GVYGIGKSTTGRVMASAASGGSPTLYFPE 41
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 29.9 bits (67), Expect = 0.24
Identities = 9/56 (16%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 159 LYGPPGCGKSSFITALAGELE---FGICVLNLSERGLTDDRLNHLLSVAPQNSIIL 211
+ G G GKS+ + + + + L + V Q++++L
Sbjct: 34 IVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLL 89
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 29.2 bits (64), Expect = 0.27
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 159 LYGPPGCGKSSFITALAGE 177
L G P GKSS + A+
Sbjct: 6 LVGYPNAGKSSLLAAMTRA 24
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 29.3 bits (64), Expect = 0.27
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 159 LYGPPGCGKSSFITALAGE 177
+ G P GKS+ + L G
Sbjct: 10 IVGKPNVGKSTLLNNLLGV 28
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 29.7 bits (66), Expect = 0.28
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 148 DRGIPYRRGYLLYGPPGCGKSSFITALAGELE 179
R + L+ GP G GK+ LA
Sbjct: 43 LRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 74
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain
{Escherichia coli [TaxId: 562]}
Length = 263
Score = 29.5 bits (66), Expect = 0.30
Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 14/103 (13%)
Query: 150 GIPYRRGYLLYGPPGCGKSSFITALAGEL--EFGICVLNLSERGLTDDR-------LNHL 200
G+P R +YGP GK++ + E C +E L +++L
Sbjct: 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNL 109
Query: 201 LSVAPQNSIILLEDIDAAFVTREESSQGLEDID--AAFVTREE 241
L P LE DA + + +D AA + E
Sbjct: 110 LCSQPDTGEQALEICDALA---RSGAVDVIVVDSVAALTPKAE 149
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni
[TaxId: 197]}
Length = 161
Score = 29.1 bits (64), Expect = 0.32
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 159 LYGPPGCGKSSFITALAGELEF 180
G G GKS+ ALA +L+
Sbjct: 5 FIGFMGSGKSTLARALAKDLDL 26
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi
[TaxId: 556]}
Length = 170
Score = 29.2 bits (64), Expect = 0.32
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 159 LYGPPGCGKSSFITALAGELEF 180
+ G GCG ++ LA L +
Sbjct: 7 MVGARGCGMTTVGRELARALGY 28
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 29.0 bits (64), Expect = 0.33
Identities = 3/18 (16%), Positives = 6/18 (33%)
Query: 161 GPPGCGKSSFITALAGEL 178
G GK++ +
Sbjct: 8 GYKHSGKTTLMEKWVAAA 25
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 29.6 bits (64), Expect = 0.33
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 185 LNLSERGLTDDRLNHLLSVAPQNSIILLED 214
L++ L+D R LL + Q ++ L+D
Sbjct: 7 LDIQCEELSDARWAELLPLLQQCQVVRLDD 36
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 29.1 bits (64), Expect = 0.33
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 159 LYGPPGCGKSSFITALAGE 177
L G P GKS+ ++ ++
Sbjct: 6 LVGFPSVGKSTLLSVVSSA 24
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 29.1 bits (64), Expect = 0.35
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Query: 158 LLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRLNHLLSVAPQNSIILLEDIDA 217
LL GPPG GK + LA + GI ++ T + + + + +DA
Sbjct: 4 LLLGPPGAGKGTQAVKLAE--KLGIPQIS------TGELFRRNIEEGTKLGVEAKRYLDA 55
Query: 218 AFVTREESSQGL 229
+ + + L
Sbjct: 56 GDLVPSDLTNEL 67
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 29.2 bits (65), Expect = 0.38
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 159 LYGPPGCGKSSFITALAG 176
L GP G GKS F+ +AG
Sbjct: 29 LLGPTGAGKSVFLELIAG 46
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 29.5 bits (65), Expect = 0.39
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 161 GPPGCGKSSFITALAGEL 178
G PG GKS+ I AL L
Sbjct: 58 GVPGVGKSTTIDALGSLL 75
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 29.1 bits (65), Expect = 0.40
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 159 LYGPPGCGKSSFITALAGELE 179
GP G GKS+ + L +
Sbjct: 33 FAGPSGGGKSTIFSLLERFYQ 53
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 28.9 bits (63), Expect = 0.40
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 159 LYGPPGCGKSSFITALAGE 177
+ G P GKS+ A+ +
Sbjct: 13 IVGRPNVGKSTLFNAILNK 31
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 28.7 bits (63), Expect = 0.40
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 154 RRGYLLYGPPGCGKSSFITALAGELE--FGICV 184
R+ +L G G G+ L + F +
Sbjct: 3 RKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPI 35
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 28.8 bits (63), Expect = 0.42
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 159 LYGPPGCGKSSFITALAGELEF 180
L G PG GKS+ LA L
Sbjct: 6 LVGLPGSGKSTIGRRLAKALGV 27
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 28.9 bits (64), Expect = 0.46
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 159 LYGPPGCGKSSFITALAG 176
+ GP G GK+ F+ +AG
Sbjct: 31 ILGPTGAGKTLFLELIAG 48
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 29.0 bits (63), Expect = 0.47
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 159 LYGPPGCGKSSFITALAG 176
L G GKSSFI +L
Sbjct: 28 LAGRSNVGKSSFINSLIN 45
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 28.8 bits (63), Expect = 0.47
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 161 GPPGCGKSSFITALAGELEFG--ICVLNL 187
G G GK++ LE + +NL
Sbjct: 7 GTAGSGKTTLTGEFGRYLEDNYKVAYVNL 35
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 28.8 bits (63), Expect = 0.50
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 154 RRG--YLLYGPPGCGKSSFITALA 175
R G ++ G GKS+F+ A
Sbjct: 33 RGGEVIMVTSGSGMGKSTFVRQQA 56
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 28.5 bits (62), Expect = 0.52
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 158 LLYGPPGCGKSSFITALAGE 177
L G GK++ + L +
Sbjct: 4 LFLGLDNAGKTTLLHMLKND 23
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 28.8 bits (64), Expect = 0.54
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 159 LYGPPGCGKSSFITALAGELEF--GICVLNLSERGLTDDRLNHLLSVAPQN 207
L GP G GK++ + ++ ++ GI + + L+S P+
Sbjct: 33 LIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEE 83
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 28.6 bits (64), Expect = 0.54
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 159 LYGPPGCGKSSFITALAGELE 179
G G GKS+ I + +
Sbjct: 49 FVGMSGGGKSTLINLIPRFYD 69
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId:
2336]}
Length = 308
Score = 28.9 bits (63), Expect = 0.54
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 158 LLYGPPGCGKSSFITALA 175
+ GP G GKS+ I A+
Sbjct: 28 AIVGPNGSGKSNIIDAIK 45
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 28.6 bits (64), Expect = 0.55
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 9/57 (15%)
Query: 159 LYGPPGCGKSSFITALA-------GELEF-GICVLNLSERGLTDDRLNHLLSVAPQN 207
+ GP G GKS+ + + GE+ I +L + LT R + + Q
Sbjct: 36 IMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDK-IGFVFQQ 91
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 28.9 bits (63), Expect = 0.56
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 158 LLYGPPGCGKSSFITAL 174
+ GP G GKS+ + A+
Sbjct: 29 SIIGPNGSGKSNMMDAI 45
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 28.4 bits (63), Expect = 0.64
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 159 LYGPPGCGKSSFITALAG 176
GP GCGKS+ + +AG
Sbjct: 31 FVGPSGCGKSTLLRMIAG 48
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 28.5 bits (63), Expect = 0.65
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 159 LYGPPGCGKSSFITALAG 176
+ GP G GK++F+ +AG
Sbjct: 36 ILGPSGAGKTTFMRIIAG 53
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 28.4 bits (62), Expect = 0.67
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 158 LLYGPPGCGKSSFITALAGE 177
LL G GK++ + LA E
Sbjct: 20 LLLGLDNAGKTTLLKQLASE 39
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 28.3 bits (63), Expect = 0.68
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 159 LYGPPGCGKSSFITALAGELE 179
+GP G GK++ + ++ L+
Sbjct: 32 FHGPNGIGKTTLLKTISTYLK 52
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 28.4 bits (62), Expect = 0.69
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 151 IPYRRGY-LLYGPPGCGKSSFITALA 175
IP+ +G+ + G G GKS+ A+
Sbjct: 22 IPFSKGFTAIVGANGSGKSNIGDAIL 47
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 28.1 bits (61), Expect = 0.69
Identities = 7/21 (33%), Positives = 8/21 (38%)
Query: 158 LLYGPPGCGKSSFITALAGEL 178
L G GK + AL L
Sbjct: 10 FLTGYMNSGKDAIARALQVTL 30
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 208
Score = 28.1 bits (61), Expect = 0.73
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 161 GPPGCGKSSFITALAGELE-FGICVLNLSE 189
G G GK + + L+G G V L+
Sbjct: 7 GVDGAGKRTLVEKLSGAFRAAGRSVATLAF 36
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 28.1 bits (61), Expect = 0.73
Identities = 5/20 (25%), Positives = 6/20 (30%)
Query: 158 LLYGPPGCGKSSFITALAGE 177
L G GK+ L
Sbjct: 4 LFVGLCDSGKTLLFVRLLTG 23
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 28.4 bits (63), Expect = 0.80
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 159 LYGPPGCGKSSFITALAG 176
L GP GCGK++ + +AG
Sbjct: 34 LLGPSGCGKTTTLRMIAG 51
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 241
Score = 28.1 bits (61), Expect = 0.84
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 161 GPPGCGKSSFITALAGELE-FGICVLNLSERGLTDDR 196
G GKS+F+ L E + + ++
Sbjct: 9 GNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQST 45
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 28.0 bits (61), Expect = 0.85
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 158 LLYGPPGCGKSSFITALAGELEF 180
+L GPPG GK + L
Sbjct: 6 VLIGPPGAGKGTQAPNLQERFHA 28
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 28.0 bits (61), Expect = 0.86
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 158 LLYGPPGCGKSSFITALAGELEF 180
+ G PG GK + + + +
Sbjct: 10 FVLGGPGSGKGTQCANIVRDFGW 32
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 27.9 bits (61), Expect = 0.86
Identities = 4/23 (17%), Positives = 10/23 (43%)
Query: 158 LLYGPPGCGKSSFITALAGELEF 180
++ G P GK + + + +
Sbjct: 7 MISGAPASGKGTQCELIKTKYQL 29
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
[TaxId: 1423]}
Length = 273
Score = 28.3 bits (62), Expect = 0.86
Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 4/101 (3%)
Query: 79 AAILR-KARTLALKQYEGKTVMYTALGSEWRPFGHPKRRRPLNSVVLDSGVADRILTDIK 137
IL+ K R + L + + T E F + R + V G+ + +
Sbjct: 37 EDILKNKPRIMLLNKADKADAAVTQQWKEH--FENQGIRSLSINSVNGQGLNQIVPASKE 94
Query: 138 QFVADPAWYLDRGIPYRRGYLLY-GPPGCGKSSFITALAGE 177
+G+ R L G P GKS+ I LA +
Sbjct: 95 ILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKK 135
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 28.0 bits (61), Expect = 0.87
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 159 LYGPPGCGKSSFITALAGEL--EFGICV 184
L GP G GKS+ + L E FG V
Sbjct: 5 LSGPSGAGKSTLLKKLFQEHSSIFGFSV 32
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 28.2 bits (62), Expect = 0.89
Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 5/50 (10%)
Query: 132 ILTDIKQFVAD--PAWY-LDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 178
+L +F+ P W+ P GP G GKS + L
Sbjct: 4 VLDYTIEFLDKYIPEWFETGNKCPLFIF--FSGPQGSGKSFTSIQIYNHL 51
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 27.8 bits (60), Expect = 0.90
Identities = 6/18 (33%), Positives = 7/18 (38%)
Query: 159 LYGPPGCGKSSFITALAG 176
G GKSS + L
Sbjct: 21 FAGRSNAGKSSALNTLTN 38
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 27.6 bits (61), Expect = 0.93
Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 16/48 (33%)
Query: 153 YRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERG---LTDDRL 197
Y G L+ G G GKS L L +RG + DDR+
Sbjct: 13 YGLGVLITGDSGVGKSE-------------TALELVQRGHRLIADDRV 47
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 27.7 bits (60), Expect = 0.95
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 158 LLYGPPGCGKSSFITALAGE 177
L+ G GK++ + L
Sbjct: 4 LMVGLDAAGKTTILYKLKLG 23
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 27.6 bits (61), Expect = 0.95
Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 22/81 (27%)
Query: 153 YRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERG---LTDDRL------NHLLSV 203
+ G LL G G GKS C L+L + + DD + N L
Sbjct: 14 FGVGVLLTGRSGIGKSE-------------CALDLINKNHLFVGDDAIEIYRLGNRLFGR 60
Query: 204 APQNSIILLEDIDAAFVTREE 224
A + + +E + E
Sbjct: 61 AQEVAKKFMEIRGLGIINVER 81
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 27.7 bits (60), Expect = 0.99
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 158 LLYGPPGCGKSSFITALAGE 177
L G GK++F+ +A
Sbjct: 6 TLVGLQYSGKTTFVNVIASG 25
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 227
Score = 27.7 bits (60), Expect = 1.0
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 157 YLLYGPPGCGKSSFITALAGEL 178
L YGPPG GK+S I ALA E+
Sbjct: 38 LLFYGPPGTGKTSTIVALAREI 59
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 28.0 bits (62), Expect = 1.0
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 159 LYGPPGCGKSSFITALAGELE 179
L G G GK++ ++A+AG +
Sbjct: 37 LIGANGAGKTTTLSAIAGLVR 57
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 27.6 bits (60), Expect = 1.0
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 159 LYGPPGCGKSSFITALAGEL--EFGICV 184
+ GP G GKS+ + L E FG V
Sbjct: 6 ISGPSGTGKSTLLKKLFAEYPDSFGFSV 33
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 27.8 bits (62), Expect = 1.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 159 LYGPPGCGKSSFITALAG 176
L GP GCGK++ + +AG
Sbjct: 37 LLGPSGCGKTTTLRMIAG 54
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 27.8 bits (61), Expect = 1.1
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 159 LYGPPGCGKSSFITALAGELE 179
+ G G GKSS + A+ L+
Sbjct: 100 MAGLSGVGKSSLLNAINPGLK 120
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 27.6 bits (60), Expect = 1.1
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 158 LLYGPPGCGKSSFITALAGELEF 180
+ G PG GK + L + F
Sbjct: 12 FVLGGPGAGKGTQCEKLVKDYSF 34
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 27.6 bits (60), Expect = 1.2
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 158 LLYGPPGCGKSSFITALAGELEF 180
+L G PG GK + +
Sbjct: 4 VLMGLPGAGKGTQAEKIVAAYGI 26
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 27.6 bits (60), Expect = 1.2
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 158 LLYGPPGCGKSSFITALAGELE 179
++ G P GK+ L L
Sbjct: 6 VMVGLPARGKTYISKKLTRYLN 27
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 27.6 bits (61), Expect = 1.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 159 LYGPPGCGKSSFITALAG 176
L GP G GKS+ + +AG
Sbjct: 30 LVGPNGAGKSTLLARMAG 47
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 27.6 bits (60), Expect = 1.3
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 158 LLYGPPGCGKSSFITALAGELEF 180
+L GPPG GK + LA
Sbjct: 7 VLLGPPGAGKGTQAPKLAKNFCV 29
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 27.6 bits (61), Expect = 1.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 159 LYGPPGCGKSSFITALAGELE 179
+ GP G GKS+ I + G L+
Sbjct: 35 IIGPNGSGKSTLINVITGFLK 55
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId:
562]}
Length = 210
Score = 27.2 bits (59), Expect = 1.4
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 155 RGYL--LYGPPGCGKSSFITALAGELE 179
R + G G GK++ + LE
Sbjct: 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 27.3 bits (59), Expect = 1.4
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 157 YLLYGPPGCGKSSFITALAGELE 179
+L GP GKS+ + L +
Sbjct: 5 VVLSGPSAVGKSTVVRCLRERIP 27
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 27.3 bits (59), Expect = 1.5
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 158 LLYGPPGCGKSSFITALAGE 177
++ G G GK+S + +
Sbjct: 6 IILGDSGVGKTSLMHRYVND 25
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 27.5 bits (61), Expect = 1.5
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 159 LYGPPGCGKSSFITALAG 176
+ G G GKS+F+ +
Sbjct: 33 IIGSSGSGKSTFLRCINF 50
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 27.2 bits (59), Expect = 1.5
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 158 LLYGPPGCGKSSFITALAGELEF 180
+ G PG GK + + + +
Sbjct: 12 FVVGGPGSGKGTQCEKIVQKYGY 34
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 26.8 bits (59), Expect = 1.6
Identities = 20/82 (24%), Positives = 28/82 (34%), Gaps = 23/82 (28%)
Query: 153 YRRGYLLYGPPGCGKSSFITALAGELEFGICVLNLSERG---LTDDRL-------NHLLS 202
Y G L+ G G GKS L L +RG + DD + + L+
Sbjct: 14 YGVGVLITGDSGIGKSE-------------TALELIKRGHRLVADDNVEIREISKDELIG 60
Query: 203 VAPQNSIILLEDIDAAFVTREE 224
AP+ LLE +
Sbjct: 61 RAPKLIEHLLEIRGLGIINVMT 82
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 27.1 bits (59), Expect = 1.6
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 158 LLYGPPGCGKSSFITALAGELEF 180
+ G PG GK + + + E
Sbjct: 10 AIMGAPGSGKGTVSSRITKHFEL 32
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 241
Score = 27.3 bits (59), Expect = 1.7
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 161 GPPGCGKSSFITALAGELE 179
G GKS+F+ L
Sbjct: 9 GNIAVGKSTFVKLLTKTYP 27
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 27.0 bits (58), Expect = 1.7
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 158 LLYGPPGCGKSSFITALAGE 177
++ G G GK+S + +
Sbjct: 6 IILGDSGVGKTSLMNQYVNK 25
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 27.0 bits (58), Expect = 1.7
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 158 LLYGPPGCGKSSFITALAGELEFGIC 183
L G G GK++ AL L
Sbjct: 23 WLTGLSGAGKTTVSMALEEYLVCHGI 48
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 27.0 bits (58), Expect = 1.7
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 158 LLYGPPGCGKSSFITALAGE 177
+ G GK++ + L +
Sbjct: 17 VFLGLDNAGKTTLLHMLKDD 36
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia
coli [TaxId: 562]}
Length = 179
Score = 26.8 bits (58), Expect = 1.7
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 158 LLYGPPGCGKSSFITALAGELEF 180
+L G P GK + + +
Sbjct: 4 ILLGAPVAGKGTQAQFIMEKYGI 26
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 27.5 bits (60), Expect = 1.8
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 20/98 (20%)
Query: 156 GYLLYGPPGCGKSSFITALAGELEFGICVLNLSERG-------LTDDRLNHLLSVAP--- 205
LL GP G GK+ LA L+ I + + + ++ L LL +
Sbjct: 70 NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNV 129
Query: 206 ---QNSIILLEDIDA-------AFVTREESSQGLEDID 233
Q I+ +++ID +TR+ S +G++
Sbjct: 130 QKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQAL 167
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 26.9 bits (58), Expect = 2.0
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 158 LLYGPPGCGKSSFITALAGELEF 180
+ G PG GK + + + +
Sbjct: 5 FVLGGPGAGKGTQCARIVEKYGY 27
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 26.6 bits (57), Expect = 2.0
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 158 LLYGPPGCGKSSFITALAG 176
++ G GKSS I
Sbjct: 6 VVVGNGAVGKSSMIQRYCK 24
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 197
Score = 26.9 bits (58), Expect = 2.0
Identities = 5/63 (7%), Positives = 15/63 (23%), Gaps = 1/63 (1%)
Query: 161 GPPGCGKSSFITALAGEL-EFGICVLNLSERGLTDDRLNHLLSVAPQNSIILLEDIDAAF 219
G G GK++++ + + + + + L +
Sbjct: 16 GNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTL 75
Query: 220 VTR 222
Sbjct: 76 TML 78
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 27.0 bits (58), Expect = 2.0
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 161 GPPGCGKSSFITALAGEL 178
G GK++ L+ L
Sbjct: 29 GLSRSGKTTLANQLSQTL 46
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 27.1 bits (59), Expect = 2.0
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 7/57 (12%)
Query: 161 GPPGCGKSSFITAL-------AGELEFGICVLNLSERGLTDDRLNHLLSVAPQNSII 210
G P GKS+F A+ + ++ + D+R + L S +
Sbjct: 17 GMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRV 73
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 26.5 bits (57), Expect = 2.2
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 154 RRGYLLYGPPGCGKSSFITALAGE 177
R+ ++ G CGK+ + + +
Sbjct: 2 RKKLVIVGDGACGKTCLLIVNSKD 25
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 26.9 bits (58), Expect = 2.2
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 161 GPPGCGKSSFITALAGELEF 180
GP G GK + A+A L++
Sbjct: 10 GPSGAGKGTLCKAMAEALQW 29
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 26.8 bits (58), Expect = 2.3
Identities = 6/18 (33%), Positives = 7/18 (38%)
Query: 161 GPPGCGKSSFITALAGEL 178
G GKSS + L
Sbjct: 9 GGTASGKSSVCAKIVQLL 26
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 26.6 bits (58), Expect = 2.4
Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 12/76 (15%)
Query: 157 YLLYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRLNHLLSVAPQNSIILLEDID 216
YL G G GK+S LA L ++ + + L+E ID
Sbjct: 37 YLFSGTRGVGKTSIARLLAKGLNC-----ETGITATPCGVCDNCREIEQGRFVDLIE-ID 90
Query: 217 AAFVTREESSQGLEDI 232
AA S +ED
Sbjct: 91 AA------SRTKVEDT 100
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 26.4 bits (57), Expect = 2.4
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 158 LLYGPPGCGKSSFITALAGELEFGICVL 185
L+ P G GKS+ + A G VL
Sbjct: 12 HLHAPTGSGKSTKVPAAY--AAQGYKVL 37
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 26.5 bits (57), Expect = 2.7
Identities = 3/20 (15%), Positives = 9/20 (45%)
Query: 158 LLYGPPGCGKSSFITALAGE 177
++ G GK++ + +
Sbjct: 19 IIVGLDNAGKTTILYQFSMN 38
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 26.4 bits (57), Expect = 2.7
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 158 LLYGPPGCGKSSFITALAGELEF 180
+L G PG GK + + +
Sbjct: 4 VLMGLPGAGKGTQADRIVEKYGT 26
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId:
1313]}
Length = 223
Score = 26.5 bits (57), Expect = 3.0
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 161 GPPGCGKSSFITALAGELEF 180
GP GKS+ +A + F
Sbjct: 10 GPASSGKSTVAKIIAKDFGF 29
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 214
Score = 26.4 bits (57), Expect = 3.0
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 155 RGYL--LYGPPGCGKSSFITALAGELE 179
RG L + G GK++ L +L+
Sbjct: 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli
[TaxId: 562]}
Length = 222
Score = 26.5 bits (57), Expect = 3.1
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 158 LLYGPPGCGKSSFITAL 174
L G G GKS+ + A
Sbjct: 28 TLSGGNGAGKSTTMAAF 44
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 26.5 bits (58), Expect = 3.2
Identities = 6/30 (20%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 161 GPPGCGKSSFITALAGELEF-GICVLNLSE 189
G G GK++ +L + E
Sbjct: 12 GAYGIGKTTAAEEFLHHFAITPNRILLIGE 41
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 26.2 bits (57), Expect = 3.8
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 158 LLYGPPGCGKSSFITALA 175
+L G PG GK++ + LA
Sbjct: 47 VLIGEPGVGKTAIVEGLA 64
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 26.1 bits (57), Expect = 4.0
Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 18/99 (18%)
Query: 158 LLYGPPGCGKSSFITALAG-----------------ELEFGICVLNLSERGLTDDRLNHL 200
LL G G GK++ LA L+ G + RG + R L
Sbjct: 43 LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKAL 102
Query: 201 LSVAPQNSIILLEDIDAAFVTREESSQGLEDIDAAFVTR 239
L Q++ +L + + ++ G +DAA + +
Sbjct: 103 LKQLEQDTNSILFIDEIHTIIGAGAASG-GQVDAANLIK 140
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 26.0 bits (56), Expect = 4.3
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 157 YLLYGPPGCGKSSFITALAGELEF 180
Y++ P G GKSS I AL
Sbjct: 5 YIVSAPSGAGKSSLIQALLKTQPL 28
>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase
{Bacteriophage T4 [TaxId: 10665]}
Length = 241
Score = 25.7 bits (55), Expect = 4.8
Identities = 12/73 (16%), Positives = 20/73 (27%), Gaps = 11/73 (15%)
Query: 159 LYGPPGCGKSSFITALAGELEFGICVLNLSERGLTDDRLNHLLSVAPQNSIILLEDIDAA 218
L G GK + + L + L+ A + + D
Sbjct: 6 LSGVKRSGKDTTADFIMSNY--SAVKYQL------AGPIKDALAYAWG---VFAANTDYP 54
Query: 219 FVTREESSQGLED 231
+TR+E D
Sbjct: 55 CLTRKEFEGIDYD 67
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 25.7 bits (56), Expect = 5.4
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 161 GPPGCGKSSFITALAGELE 179
GP G GK++ L
Sbjct: 11 GPHGMGKTTTTQLLVALGS 29
>d1hcua_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
domain {Trichoderma reesei [TaxId: 51453]}
Length = 488
Score = 25.8 bits (56), Expect = 6.2
Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 11/72 (15%)
Query: 109 PFGHPKRRRPLNSVVLDSGV--ADRILTDIKQFVADPAWYLDRGIPYRRGYLLYGPPGCG 166
PF + L + +L A+ + A+ G+P + G
Sbjct: 113 PFSSLATNQTLVNSLLRQAQTLANGLK---------VAFTTPSGVPDPTVFFNPTVRRSG 163
Query: 167 KSSFITALAGEL 178
SS A G L
Sbjct: 164 ASSNNVAEIGSL 175
>d1ub7a1 c.95.1.2 (A:2-173) Ketoacyl-ACP synthase III (FabH)
{Thermus thermophilus [TaxId: 274]}
Length = 172
Score = 25.2 bits (54), Expect = 7.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 72 LFGLGAGAAILRKAR 86
LFG G GAA++ K R
Sbjct: 153 LFGDGGGAAVVGKVR 167
Score = 24.8 bits (53), Expect = 8.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 22 LFGLGAGAAILRKGK 36
LFG G GAA++ K +
Sbjct: 153 LFGDGGGAAVVGKVR 167
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 25.1 bits (54), Expect = 7.4
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 158 LLYGPPGCGKSSFITALAGELE 179
+ G G GKSS + A++ EL
Sbjct: 101 VFAGQSGVGKSSLLNAISPELG 122
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 25.2 bits (54), Expect = 7.5
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 161 GPPGCGKSSFITALAGE 177
G GKSS + + G
Sbjct: 31 GSQSSGKSSVLENIVGR 47
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 25.1 bits (54), Expect = 8.4
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 158 LLYGPPGCGKSSFITALA 175
L+ G G GK++ I L
Sbjct: 10 LVVGVNGVGKTTTIAKLG 27
>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 278
Score = 24.9 bits (54), Expect = 8.5
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 9/78 (11%)
Query: 161 GPPGCGKSSFITAL------AGELEFGICVLNLSERGLTDDRLNHLLSVAPQNSII--LL 212
G P GKS+ AL A F N + D RL+ L + I+ +
Sbjct: 9 GLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTM 68
Query: 213 EDIDAAFVTREESS-QGL 229
E +D A + S +GL
Sbjct: 69 EFVDIAGLVAGASKGEGL 86
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 25.3 bits (54), Expect = 8.7
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 154 RRGYLLYGPPGCGKSSFITALAGEL 178
R L+ G G GKS + LA
Sbjct: 50 PRHLLVNGATGTGKSVLLRELAYTG 74
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 25.2 bits (54), Expect = 9.2
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 161 GPPGCGKSSFITALAGE 177
G GKSS + G
Sbjct: 33 GGQSAGKSSVLENFVGR 49
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 288
Score = 24.9 bits (54), Expect = 9.3
Identities = 5/29 (17%), Positives = 10/29 (34%), Gaps = 1/29 (3%)
Query: 161 GPPGCGKSSFITALAGEL-EFGICVLNLS 188
G G G S+ G+ +++
Sbjct: 11 GSSGAGTSTVKHTFDQIFRREGVKAVSIE 39
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 315
Score = 25.1 bits (54), Expect = 9.6
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 20/82 (24%)
Query: 157 YLLYGPPGCGKSSFITALAGEL-EFGICVLNLSERGLTDDRLNHLLSVAP---------- 205
+L GP G GK+ LA L + ++ + + L AP
Sbjct: 56 FLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGG 115
Query: 206 ---------QNSIILLEDIDAA 218
S+IL ++I+ A
Sbjct: 116 QLTEAVRRRPYSVILFDEIEKA 137
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.141 0.423
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 930,550
Number of extensions: 43923
Number of successful extensions: 353
Number of sequences better than 10.0: 1
Number of HSP's gapped: 351
Number of HSP's successfully gapped: 173
Length of query: 244
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 161
Effective length of database: 1,268,006
Effective search space: 204148966
Effective search space used: 204148966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)