Query psy13710
Match_columns 615
No_of_seqs 264 out of 496
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 18:31:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13710.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13710hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f87_A Plycb; lysin, bacteriop 13.8 54 0.0019 25.5 0.8 21 553-573 37-58 (72)
2 1q90_L Cytochrome B6F complex 13.7 1.8E+02 0.0061 20.1 3.3 20 156-175 4-23 (32)
3 2a7y_A Hypothetical protein RV 11.3 51 0.0018 27.6 -0.0 20 3-22 41-60 (83)
4 2ww9_B Protein transport prote 10.0 6.3E+02 0.022 20.8 6.2 17 365-381 17-33 (80)
5 2o6n_A RH4B designed peptide; 8.7 97 0.0033 21.1 0.6 18 585-605 13-30 (35)
6 3pk1_B Apoptosis regulator BAX 8.5 84 0.0029 22.0 0.2 19 561-579 13-31 (34)
7 2xze_Q Charged multivesicular 8.2 1.3E+02 0.0046 21.8 1.2 12 591-602 21-32 (40)
8 1jb0_I Photosystem 1 reaction 7.9 2.3E+02 0.0079 20.3 2.3 20 432-451 7-26 (38)
9 3spe_A Phikz029; structural pr 6.8 1.6E+02 0.0055 29.2 1.4 25 6-30 190-214 (295)
10 2ca6_A RAN GTPase-activating p 5.1 1.5E+02 0.005 30.0 0.0 9 562-570 323-331 (386)
No 1
>4f87_A Plycb; lysin, bacteriophage, antimicrobial protein, viral protein; 1.40A {Streptococcus phage C1} PDB: 4f88_A
Probab=13.76 E-value=54 Score=25.53 Aligned_cols=21 Identities=38% Similarity=0.381 Sum_probs=14.4
Q ss_pred eeeecCCc-hhhHHHHHhhhcc
Q psy13710 553 CQIIKQDD-VTQFQRIIDSLDS 573 (615)
Q Consensus 553 ~~~~~~~~-~~~~~~~~~~~~~ 573 (615)
=||||.-| +.-||.||.|+.-
T Consensus 37 eigikdietvqgfqqiipsini 58 (72)
T 4f87_A 37 EIGIKDIETVQGFQQIIPSINI 58 (72)
T ss_dssp EEEECCHHHHHHHHTTSCEEEC
T ss_pred EecceehHHhhhHHHhCccccc
Confidence 36787755 4558988887653
No 2
>1q90_L Cytochrome B6F complex subunit PETL; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.24.1
Probab=13.71 E-value=1.8e+02 Score=20.13 Aligned_cols=20 Identities=20% Similarity=0.266 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q psy13710 156 VASYFTFLRWLFFVNFILAL 175 (615)
Q Consensus 156 V~SYF~FLR~L~~~N~~~~l 175 (615)
+.|||.||=..+.+-.++|+
T Consensus 4 iisYf~fL~~al~~t~~lfi 23 (32)
T 1q90_L 4 ITSYVGLLIGALVFTLGIYL 23 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57999998777666655544
No 3
>2a7y_A Hypothetical protein RV2302/MT2359; anti-parallel beta sheet, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.34.6.3
Probab=11.25 E-value=51 Score=27.58 Aligned_cols=20 Identities=35% Similarity=0.544 Sum_probs=17.4
Q ss_pred cccccCCCCcCCCCCCCCcc
Q psy13710 3 KVRFSEDGNESGLTGGPDHV 22 (615)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~ 22 (615)
-|||++||.|+=.--|||..
T Consensus 41 ~VRw~ddGHe~lv~PGPDa~ 60 (83)
T 2a7y_A 41 VVRWLVNGHETTVYPGSDAV 60 (83)
T ss_dssp EEEETTTTEEEEECCCSSCE
T ss_pred EEEecCCCcEEEEecCCCeE
Confidence 38999999999999999864
No 4
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=10.02 E-value=6.3e+02 Score=20.81 Aligned_cols=17 Identities=12% Similarity=0.089 Sum_probs=7.9
Q ss_pred hhhhhHHHHHHHHHHHH
Q psy13710 365 RTSSIILGFKEALVEEA 381 (615)
Q Consensus 365 k~~sI~~elKe~L~Ee~ 381 (615)
+...+...+++.+.+..
T Consensus 17 ~~~~~~e~~~~f~kd~~ 33 (80)
T 2ww9_B 17 QVEKLVEAPVEFVREGT 33 (80)
T ss_dssp ----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33345556666666654
No 5
>2o6n_A RH4B designed peptide; right-handed, tetramer, de novo protein; HET: CGU; 1.10A {Synthetic} SCOP: k.17.1.1 PDB: 1tgg_A*
Probab=8.74 E-value=97 Score=21.09 Aligned_cols=18 Identities=67% Similarity=0.887 Sum_probs=11.2
Q ss_pred eeeccchhhhHhhHHHHhHHH
Q psy13710 585 YLIKKQEEEKEEDLEEMEKEE 605 (615)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~ 605 (615)
|||||. |||-|||..|..
T Consensus 13 ylikka---keeileeikkak 30 (35)
T 2o6n_A 13 YLIKKA---KEEILEEIKKAK 30 (35)
T ss_dssp HHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHHHHHHHH
Confidence 788875 455666665543
No 6
>3pk1_B Apoptosis regulator BAX; BCL-2 family fold, regulation of apoptosis, mitochondri apoptosis-apoptosis regulator complex; 2.49A {Homo sapiens} PDB: 3pl7_C 2xa0_C
Probab=8.49 E-value=84 Score=21.95 Aligned_cols=19 Identities=42% Similarity=0.595 Sum_probs=16.1
Q ss_pred hhhHHHHHhhhccccccch
Q psy13710 561 VTQFQRIIDSLDSSVDLTR 579 (615)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~ 579 (615)
+.+.++|-|.||+.++|.|
T Consensus 13 ~~cL~~IgDEld~N~ELQr 31 (34)
T 3pk1_B 13 SECLKRIGDELDSNMELQR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHH
Confidence 4678999999999988866
No 7
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=8.16 E-value=1.3e+02 Score=21.76 Aligned_cols=12 Identities=67% Similarity=0.902 Sum_probs=7.0
Q ss_pred hhhhHhhHHHHh
Q psy13710 591 EEEKEEDLEEME 602 (615)
Q Consensus 591 ~~~~~~~~~~~~ 602 (615)
+++.|||+++|.
T Consensus 21 ~edeEedi~~Mq 32 (40)
T 2xze_Q 21 EEEEEEALEAMQ 32 (40)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhhHHHHHHHH
Confidence 344456777775
No 8
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=7.91 E-value=2.3e+02 Score=20.31 Aligned_cols=20 Identities=10% Similarity=0.106 Sum_probs=16.7
Q ss_pred hhhhhHHHHHHHHhhhhHHH
Q psy13710 432 HKNEAVVVIWIIGVTFPRLL 451 (615)
Q Consensus 432 ~~~~~sIViSliN~i~P~lF 451 (615)
..|+|+|.+-++.+++|.+.
T Consensus 7 a~~LPsI~VPlVglvfPai~ 26 (38)
T 1jb0_I 7 ASFLPWIFIPVVCWLMPTVV 26 (38)
T ss_dssp TTTHHHHHHHHHHTHHHHHH
T ss_pred hhhCChhhHhHHHHHHHHHH
Confidence 34899999999999999643
No 9
>3spe_A Phikz029; structural protein; 2.40A {Pseudomonas phage phikz} PDB: 3j0i_A 3j0h_A
Probab=6.79 E-value=1.6e+02 Score=29.23 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=18.5
Q ss_pred ccCCCCcCCCCCCCCccceEEEEee
Q psy13710 6 FSEDGNESGLTGGPDHVGQIYIYLI 30 (615)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (615)
++.||-+||++--=..-+|+|+|++
T Consensus 190 Y~ddg~~sG~~PlYsPFsqfYvY~e 214 (295)
T 3spe_A 190 YSDDGVVSGLSPLYSPFSQFYVYHE 214 (295)
T ss_dssp TCBCSTTTCSSCBCCSBSCCEECHH
T ss_pred hhccccccccCCCCCchhheeEehh
Confidence 5678888888765555678888864
No 10
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=5.08 E-value=1.5e+02 Score=29.96 Aligned_cols=9 Identities=0% Similarity=0.398 Sum_probs=3.6
Q ss_pred hhHHHHHhh
Q psy13710 562 TQFQRIIDS 570 (615)
Q Consensus 562 ~~~~~~~~~ 570 (615)
.++...+.+
T Consensus 323 ~~l~~~l~~ 331 (386)
T 2ca6_A 323 DEIREVFST 331 (386)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhh
Confidence 344444333
Done!