Query psy13710
Match_columns 615
No_of_seqs 264 out of 496
Neff 5.7
Searched_HMMs 13730
Date Fri Aug 16 18:31:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13710.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13710hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a7ya1 b.34.6.3 (A:1-80) Hypo 9.6 30 0.0022 26.8 -0.0 20 3-22 38-57 (80)
2 d2clyb1 f.53.1.1 (B:4-123) ATP 6.9 1E+02 0.0073 25.3 2.2 41 560-603 62-102 (120)
3 d1iufa1 a.4.1.7 (A:-2-75) Ars- 6.7 74 0.0054 24.4 1.1 20 70-89 6-25 (78)
4 d2axtj1 f.23.32.1 (J:7-40) Pho 5.8 2.9E+02 0.021 17.5 3.5 23 393-415 5-27 (34)
5 d2axtm1 f.23.35.1 (M:1-36) Pho 5.2 84 0.0061 20.5 0.5 19 169-187 3-21 (36)
6 d1x5na1 b.36.1.1 (A:8-108) Har 5.0 1.9E+02 0.013 22.3 2.7 51 14-65 25-82 (101)
7 d1luia_ d.93.1.1 (A:) Itk/tsk 3.7 1.9E+02 0.014 22.3 1.7 59 4-65 33-95 (108)
8 d2bt6a1 d.15.4.1 (A:5-108) Adr 3.7 1.7E+02 0.012 22.6 1.4 24 566-589 72-95 (104)
9 d1vi7a1 d.14.1.11 (A:3-137) Hy 3.3 1.2E+02 0.009 25.3 0.2 15 5-19 69-83 (135)
10 d1ykhb1 a.252.1.1 (B:2-130) RN 3.2 4E+02 0.029 21.5 3.4 13 561-573 69-81 (129)
No 1
>d2a7ya1 b.34.6.3 (A:1-80) Hypothetical protein Rv2302/MT2359 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=9.65 E-value=30 Score=26.82 Aligned_cols=20 Identities=35% Similarity=0.544 Sum_probs=17.1
Q ss_pred cccccCCCCcCCCCCCCCcc
Q psy13710 3 KVRFSEDGNESGLTGGPDHV 22 (615)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~ 22 (615)
-|||++||.|+-.--|||..
T Consensus 38 ~VRw~ddGHe~lv~PGpDa~ 57 (80)
T d2a7ya1 38 VVRWLVNGHETTVYPGSDAV 57 (80)
T ss_dssp EEEETTTTEEEEECCCSSCE
T ss_pred EEEeCCCCcEEEEecCCCee
Confidence 38999999999998999754
No 2
>d2clyb1 f.53.1.1 (B:4-123) ATP synthase subunit d, mitochondrial {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.93 E-value=1e+02 Score=25.28 Aligned_cols=41 Identities=20% Similarity=0.378 Sum_probs=29.9
Q ss_pred chhhHHHHHhhhccccccchhhheeeeeccchhhhHhhHHHHhH
Q psy13710 560 DVTQFQRIIDSLDSSVDLTRYACQIYLIKKQEEEKEEDLEEMEK 603 (615)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (615)
=|.+|+.-.+++...+|..+|..+| ..+|.|-.++.++..+
T Consensus 62 ~VD~fek~y~alkvp~p~d~~t~~i---da~e~e~~~~~~~~~~ 102 (120)
T d2clyb1 62 LVDDFEKKFNALKVPIPEDKYTAQV---DAEEKEDVKSCAEFLT 102 (120)
T ss_dssp HHHHHHHHHTTCCCCCCCCCCTTHH---HHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHhcccCCCChhhhhHHh---HHHHHHHHHHHHHHHH
Confidence 4789999999999889998888765 4555555555555443
No 3
>d1iufa1 a.4.1.7 (A:-2-75) Ars-binding protein 1, ABP1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=6.66 E-value=74 Score=24.38 Aligned_cols=20 Identities=15% Similarity=0.096 Sum_probs=16.3
Q ss_pred HhhcCCcchHHHHHHHHHHH
Q psy13710 70 NVKQQPWSMRRKLKLVQQAK 89 (615)
Q Consensus 70 ~lR~~P~~m~~Kr~l~~~~~ 89 (615)
+++..|+++.+|+.||+.++
T Consensus 6 ~~~R~aIs~~qK~ALR~~~~ 25 (78)
T d1iufa1 6 KIKRRAITEHEKRALRHYFF 25 (78)
T ss_dssp CCSSSCCCSHHHHHHHHHHH
T ss_pred ccccccCCHHHHHHHHHHHH
Confidence 46889999999999976654
No 4
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.83 E-value=2.9e+02 Score=17.53 Aligned_cols=23 Identities=13% Similarity=0.312 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Q psy13710 393 ICIRIIVNILVVFLLGISAYTII 415 (615)
Q Consensus 393 ~~~Ril~nllvl~lL~~s~y~I~ 415 (615)
|..-.++.+.+++++|.-+|+-|
T Consensus 5 Wlv~tv~G~~vi~~vG~FfYGsY 27 (34)
T d2axtj1 5 WIVATVAGMGVIVIVGLFFYGAY 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEeeehhhhhhHhheeeeeeeee
Confidence 44445567778888888888866
No 5
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.20 E-value=84 Score=20.46 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q psy13710 169 VNFILALGLILFVTIPEEW 187 (615)
Q Consensus 169 ~N~~~~l~~~~fv~~p~~~ 187 (615)
+|.+-++-.+.||++|...
T Consensus 3 vN~Lg~iAt~LFilvPt~F 21 (36)
T d2axtm1 3 VNQLGLIATALFVLVPSVF 21 (36)
T ss_dssp CCTTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3667788888999999653
No 6
>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.98 E-value=1.9e+02 Score=22.30 Aligned_cols=51 Identities=16% Similarity=0.153 Sum_probs=34.2
Q ss_pred CCCCCCCccceEEEEeeccCCCCCcccchhhh-------hcCCCCCCHHHHHHHHhhhh
Q psy13710 14 GLTGGPDHVGQIYIYLIKMTILLPTGVSMEEI-------EAGGGGGTDEQVVENIRLHK 65 (615)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~i~eni~~~k 65 (615)
++.||+++..-+|+-.+.+.+..+.+ ....- +.+..+...+++.+-|+..+
T Consensus 25 ~i~~g~~~~~gi~V~~V~~gs~A~~~-gL~~GD~Il~VNg~~v~~~~~~~v~~~lk~~~ 82 (101)
T d1x5na1 25 SISSGPIQKPGIFISHVKPGSLSAEV-GLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSR 82 (101)
T ss_dssp EEEECCSSSCSEEEEEECTTSTTTTT-TCCTTCEEEEETTEETTSCCTTHHHHHHHHCS
T ss_pred EEeccCCCCCCEEEEEECCCChHHhC-CCCcccEEEEECCEECCCCCHHHHHHHHhCCC
Confidence 46789998877999999998776643 12211 14556666777777776654
No 7
>d1luia_ d.93.1.1 (A:) Itk/tsk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.72 E-value=1.9e+02 Score=22.35 Aligned_cols=59 Identities=17% Similarity=-0.035 Sum_probs=34.1
Q ss_pred ccccCCCCcCCCC----CCCCccceEEEEeeccCCCCCcccchhhhhcCCCCCCHHHHHHHHhhhh
Q psy13710 4 VRFSEDGNESGLT----GGPDHVGQIYIYLIKMTILLPTGVSMEEIEAGGGGGTDEQVVENIRLHK 65 (615)
Q Consensus 4 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eni~~~k 65 (615)
||-|+..+.-.|+ +.+.|.++|.-|.+..+.+++.....++ +..=.+-+++++.-+.++
T Consensus 33 VR~S~~~g~y~LSv~~~~~~~~~~~i~h~~I~~~~~~~~~~~~~~---~~~F~sl~~LV~~y~~~~ 95 (108)
T d1luia_ 33 VRDSRTPGTYTVSVFTKAIISENPCIKHYHIKETNDSPKRYYVAE---KYVFDSIPLLIQYHQYNG 95 (108)
T ss_dssp EEECCTTTCEEEEEECSCCTTTCSCEEEEECEECCCSSCCEESSS---SCCBSSHHHHHHHHHTTC
T ss_pred EEecCCCCCEEEEEEecCCcccCCceeEEEEEEecCCCceeecCC---CcccCCHHHHHHHHhhCC
Confidence 5666543333333 4566777888898877766554332222 233455677888776555
No 8
>d2bt6a1 d.15.4.1 (A:5-108) Adrenodoxin {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.71 E-value=1.7e+02 Score=22.63 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=14.2
Q ss_pred HHHhhhccccccchhhheeeeecc
Q psy13710 566 RIIDSLDSSVDLTRYACQIYLIKK 589 (615)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~ 589 (615)
..+|....--+-.|-|||+-+-+.
T Consensus 72 ~~L~~~~~~~~~sRLaCQi~l~~~ 95 (104)
T d2bt6a1 72 DMLDLAYGLTDRSRLGCQICLTKA 95 (104)
T ss_dssp HHHTTCTTCCTTEEEGGGCBCCGG
T ss_pred HHhhccCCCCcCeEEeeeCEeecc
Confidence 334443333344599999987653
No 9
>d1vi7a1 d.14.1.11 (A:3-137) Hypothetical protein YigZ, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=3.33 E-value=1.2e+02 Score=25.27 Aligned_cols=15 Identities=47% Similarity=0.948 Sum_probs=10.1
Q ss_pred cccCCCCcCCCCCCC
Q psy13710 5 RFSEDGNESGLTGGP 19 (615)
Q Consensus 5 ~~~~~~~~~~~~~~~ 19 (615)
+||.||..+|-.|.|
T Consensus 69 ~~sDDGEP~GtAG~p 83 (135)
T d1vi7a1 69 GFSDDGEPAGTAGKP 83 (135)
T ss_dssp EEECTTSCTTSSSHH
T ss_pred eccCCCCcCCCcchH
Confidence 567777667766665
No 10
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.21 E-value=4e+02 Score=21.54 Aligned_cols=13 Identities=38% Similarity=0.624 Sum_probs=8.8
Q ss_pred hhhHHHHHhhhcc
Q psy13710 561 VTQFQRIIDSLDS 573 (615)
Q Consensus 561 ~~~~~~~~~~~~~ 573 (615)
..|+..+||||.+
T Consensus 69 akqId~LI~sLP~ 81 (129)
T d1ykhb1 69 TRQINKLIDSLPG 81 (129)
T ss_dssp HHHHHHHHHHSTT
T ss_pred HhhHHHHHHhCCC
Confidence 3567777888754
Done!