RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13710
(615 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.3 bits (114), Expect = 8e-06
Identities = 64/452 (14%), Positives = 134/452 (29%), Gaps = 136/452 (30%)
Query: 241 ILFVTIPELLSNPTDCREMKKPLPEEEKESRKLYTLFEFEGILKYSP-------IFYGYY 293
IL V + N DC+++ + + + + E + I+ +F+
Sbjct: 21 ILSVFEDAFVDN-FDCKDV-------QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL 72
Query: 294 NNQDNSRYKTPLAFFIVTLLLYIYSFVAILKRMAANSKMSKLADKDDECVFTWKLFSGWD 353
+ Q+ K F+ +L Y F+ MS + + + +++
Sbjct: 73 SKQEEMVQK-----FVEEVLRINYKFL-----------MSPIKTEQRQPSMMTRMY---- 112
Query: 354 YMIGNAETAQNRTSSIILGFKEALV---EEAEKQRDHLSWKIICIRIIVNILVVFLLGIS 410
++R + F + V + K R L +R N+L+ +LG
Sbjct: 113 ------IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL----ELRPAKNVLIDGVLGSG 162
Query: 411 AYTIIEVVSRSQD-----PNRPQTVWHKNEAVVVIWI-IG-VTFPR-LLEKLGNL-EQLH 461
+ V S + + W+ + P +LE L L Q+
Sbjct: 163 KTWVALDVCLSYKVQCKMDFK------------IFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 462 P-------------------RKHLRMLLASFH----LLFLLGISAYTIIE---------V 489
P + LR LL S LL LL + +
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270
Query: 490 VSRSQDPNRPQTVWHKNEAVVVIWIIGVTFPRLLEKLGN-----LEQL-------HPRKH 537
+R + + + + +T + L + L +PR+
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330
Query: 538 ------LRMLLARNEYSESIGCQIIKQDDVTQ-FQRIIDSLDSSVDLTRY-ACQIYLIKK 589
+R LA + + + C D +T + ++ L+ + + ++
Sbjct: 331 SIIAESIRDGLATWDNWKHVNC-----DKLTTIIESSLNVLEPAEYRKMFDRLSVF---- 381
Query: 590 QEEEK--EEDLE----EMEKEEVEEEKKEMKK 615
L ++ K +V ++ K
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Score = 46.4 bits (109), Expect = 3e-05
Identities = 64/445 (14%), Positives = 143/445 (32%), Gaps = 134/445 (30%)
Query: 56 QVVENIRLHKEVLSNVKQQPWSMRRKLKLVQQAKSY-----IKRHEGELQERLAQSRSTK 110
Q+ N + SN+K + S++ +L+ + ++K Y + + + +++
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-------VQNAKAWN 260
Query: 111 DFLARFNILLVKEWQHSKRELANVMNLLIPWELRIKEIESHFGSAVASYFTFLRWL---- 166
F ILL +++ + ++ + + L++L
Sbjct: 261 AFNLSCKILLTT----RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-LLKYLDCRP 315
Query: 167 ------------FFVNFILALGLILFVTIPEEWQHSKRE-LANVM----NLLIPWELRIK 209
++ I + + + W+H + L ++ N+L P E R
Sbjct: 316 QDLPREVLTTNPRRLSIIAES-IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR-- 372
Query: 210 EIESHFGSAVASYFTFLRWLFFVNFILALGLILF---VTIPE-LLS------NPTDCREM 259
F V F IP LLS +D +
Sbjct: 373 -----------KMF----DRLSV----------FPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 260 -----KKPLPEEEKESRK--LYTLFEFEGILKYSPIFYGYYNNQDN---------SRYKT 303
K L E++ + + +++ L+ +N Y
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIY-----LELKV-------KLENEYALHRSIVDHYNI 455
Query: 304 PLAFFIVTLLL-----YIYSFVAI-LKRMAANSKMSKLADKDDECVFTWKLFSGWDYM-- 355
P F L+ Y YS + LK + + ++ F +F + ++
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNI-------EHPERMTL--FR-MVFLDFRFLEQ 505
Query: 356 -IGNAETAQNRTSSIILGFKEALVEEAEKQRDHLSWKIICIRIIVNILVVFLLGISAYTI 414
I + TA N + SI+ +++ + + ++ +VN ++ FL I
Sbjct: 506 KIRHDSTAWNASGSIL-----NTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE---- 556
Query: 415 IEVVSRSQDPNRPQ-TVWHKNEAVV 438
E + S+ + + + ++EA+
Sbjct: 557 -ENLICSKYTDLLRIALMAEDEAIF 580
Score = 42.1 bits (98), Expect = 5e-04
Identities = 72/487 (14%), Positives = 134/487 (27%), Gaps = 208/487 (42%)
Query: 49 GGGGTDEQVVENIRLHKEVLSNVKQQP-------W-SMRRK------LKLVQQ-----AK 89
G G+ + + +V + K Q W +++ L+++Q+
Sbjct: 157 GVLGSGKTW-----VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 90 SYIKRHEGELQERLAQSRSTKDFLARF-------NILLV-------KEWQ----HSK--- 128
++ R + +L + S + L R N LLV K W K
Sbjct: 212 NWTSRSDHSSNIKL-RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270
Query: 129 ----RELANVMNLLIPWELRIKEIESHFGSAVASYFTFLRWL----------------FF 168
+++ + ++ + + L++L
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-LLKYLDCRPQDLPREVLTTNPRR 329
Query: 169 VNFILALGLILFVTIPEEWQHSKRE-LANVM----NLLIPWELRIKEIESHFGSAVASYF 223
++ I + + + W+H + L ++ N+L P E R F
Sbjct: 330 LSIIAES-IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR-------------KMF 375
Query: 224 TFLRWLFFVNFILALGLILF---VTIPE-LLS------NPTDCREM-----KKPLPEEEK 268
V F IP LLS +D + K L E++
Sbjct: 376 ----DRLSV----------FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 269 ESRK--LYTLFEFEGILKYSPIFYGYYNNQDN---------SRYKTPLAFFIVTLLL--- 314
+ + +++ L+ +N Y P F L+
Sbjct: 422 KESTISIPSIY-----LELKV-------KLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469
Query: 315 --YIYSFVAI-LKRMAANSKMSKLADKDDECVFTWKLFSGWDYM---IGNAETAQNRTSS 368
Y YS + LK + + ++ F +F + ++ I + TA N + S
Sbjct: 470 DQYFYSHIGHHLKNI-------EHPERMTL--FR-MVFLDFRFLEQKIRHDSTAWNASGS 519
Query: 369 I---------------------------ILGF------------------------KEAL 377
I IL F EA+
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579
Query: 378 VEEAEKQ 384
EEA KQ
Sbjct: 580 FEEAHKQ 586
Score = 37.5 bits (86), Expect = 0.014
Identities = 103/639 (16%), Positives = 177/639 (27%), Gaps = 203/639 (31%)
Query: 19 PDHVGQIYIYLIKMTILLPTGVSMEEIEAGGGGGTD-EQVVENIRLHKEVLSNVKQQPWS 77
D V L LL M + + + ++ I+ + S + +
Sbjct: 58 KDAVSGTL-RLF--WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 78 MRRKLKLVQQ--AKSYIKRHE--GELQERLAQSRSTKDFLARFNILLV------KEWQHS 127
R +L Q AK + R + +L++ L + R K N+L+ K W
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK------NVLIDGVLGSGKTW--- 165
Query: 128 KRELANVMNLLIPWELRIKEIESHFGSAVASYFTFLRWLFFVNF-----ILALGLILFVT 182
+A + +++ + F WL N +L + L
Sbjct: 166 ---VALDV-------CLSYKVQCKMDFKI-----F--WLNLKNCNSPETVLEMLQKLLYQ 208
Query: 183 IPEEWQHSKRELANVMNLLIPWELRIKEIESHFGSAVASYFTFLRWLFFVN--FIL---- 236
I W +N+ +LRI I++ L+ + N +L
Sbjct: 209 IDPNWTSRSDHSSNI-------KLRIHSIQAELR-------RLLKSKPYENCLLVLLNVQ 254
Query: 237 ------ALGL---ILFVT----IPELLSNPTDCR----EMKKPLPEEEKESRKLYTLFEF 279
A L IL T + + LS T L +E +S L
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS-----LL-- 307
Query: 280 EGILKYSPIFYGYYNNQDNSRYKT--PLAFFIVTLLLYIYSFVAILKRMAANSKMSKLAD 337
LKY + R + L I ++ A
Sbjct: 308 ---LKYL-----------DCRPQDLPREVLTTNPRRLSI--IAESIRDGLA--------- 342
Query: 338 KDDECVFTWKLFSGWDYMIGNAETAQNRTSSIILGFKEALVEEAEKQR--DHLSWKIICI 395
TW W ++ ++ ++II L E AE ++ D LS
Sbjct: 343 -------TWD---NWKHV------NCDKLTTIIESSLNVL-EPAEYRKMFDRLS------ 379
Query: 396 RII---VNI----LVVFLLGISAYTIIEVV----SRS---QDPNRPQTVWHKNEAVVVIW 441
+ +I L + + ++ VV S + P
Sbjct: 380 -VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP--------- 429
Query: 442 IIGVTFPRLLEKLGNLEQLHPRKHLRMLLASFHLLFLLGISAYTIIEVVSRSQDPNRPQT 501
+ L KL N LH R + + Y I ++ D +
Sbjct: 430 --SIYL-ELKVKLENEYALH-----RSI-----------VDHYNIP----KTFDSDDLIP 466
Query: 502 VWHKNEAVVVIWIIGVTFPRLLEKLGNLEQLHPRKHLRMLLARNEYSESIGCQIIKQDDV 561
+ IG L N+E RM+ + E Q I+ D
Sbjct: 467 PYLDQ---YFYSHIG-------HHLKNIEHPERMTLFRMVFLDFRFLE----QKIRHDS- 511
Query: 562 TQFQRIIDSLDSSVDLTRYACQIYLIKKQEEEKEEDLEE 600
T + L++ L Y I + E + +
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 9e-05
Identities = 60/385 (15%), Positives = 110/385 (28%), Gaps = 127/385 (32%)
Query: 19 PDHVGQIYIYLIKMTILLPTGVSMEEIEAGGGGGTDEQVVENIRLHKEVLSNVKQQPWSM 78
P VGQ + ++ + + E E G D +H +++ ++
Sbjct: 74 PSKVGQ-FDQVLN--------LCLTEFENCYLEGND--------IHALAAKLLQENDTTL 116
Query: 79 RRKLKLVQ---QAKSYIKRHEGELQE----RLAQSRSTKDFLARF----NIL-----LVK 122
+ +L++ A+ KR + R + + +A F N L
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ-LVAIFGGQGNTDDYFEELRD 175
Query: 123 EWQHSK---RELANVM-NLLIPWELRIKEIESHFGSAVASYFTFLRWL----------FF 168
+Q +L L + E F L WL +
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG----LNILEWLENPSNTPDKDYL 231
Query: 169 VNFILALGLILFVTIPEEWQHSKRELANVMNLLIPWELRIKEIESHF-G---------SA 218
++ ++ LI V Q LA+ + E+ S+ G +A
Sbjct: 232 LSIPISCPLI-GVI-----Q-----LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 219 VA--------SYFT----FLRWLFFVNFILALGLILFVTIPELLSNPT---DCRE--MKK 261
VA S+F + LFF+ G+ + P P+ D E
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFI------GVRCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 262 P--------LPEEEKESRKLYTLFEFEGIL-KYSPIFYGYYNNQDNSRYKTPLAFFIVT- 311
P L +E+ + + + L + N N +V+
Sbjct: 335 PSPMLSISNLTQEQVQDY----VNKTNSHLPAGKQVEISLVNGAKN---------LVVSG 381
Query: 312 ----LLLYIYSFVAILKRMAANSKM 332
L Y L++ A S +
Sbjct: 382 PPQSL----YGLNLTLRKAKAPSGL 402
Score = 37.0 bits (85), Expect = 0.022
Identities = 68/404 (16%), Positives = 119/404 (29%), Gaps = 139/404 (34%)
Query: 49 GGGGTDEQVVENIR-LHKEVLSNVKQQPWSMRRKLKLVQQAKSYIKRHEGELQERLAQSR 107
GG G + E +R L++ V IK L E + +
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLVGD-----------------LIKFSAETLSELIRTTL 203
Query: 108 STKDFLAR-FNILLVKEW-QHSKRE--------------------LANVMNLLIPWELRI 145
+ + NIL EW ++ LA+ +
Sbjct: 204 DAEKVFTQGLNIL---EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP 260
Query: 146 KEIESHF-G---------SAVA--------SYFT----FLRWLFFVNFILALGL------ 177
E+ S+ G +AVA S+F + LFF+ G+
Sbjct: 261 GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI------GVRCYEAY 314
Query: 178 -ILFVTIPEEWQHSKRELANV---MNLLIPWELRIKEIESHFGSAVASYFTFLRWLFF-- 231
+ P + S V M L I L ++++ + + S+ + +
Sbjct: 315 PNTSLP-PSILEDSLENNEGVPSPM-LSIS-NLTQEQVQDYV-NKTNSHLPAGKQVEISL 370
Query: 232 VN----FILALG----LILFVTIPELLSNPTDCREMKKPLPEEEKESRKLYTLFEFEGIL 283
VN +++ G L P+ + + P E RKL F L
Sbjct: 371 VNGAKNLVVS-GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE-----RKLKFSNRF---L 421
Query: 284 KYSPIFYGYYNNQDNSRYKTPLAFFIVT-LLLYIYSFVAI-LK------------RMAAN 329
P+ + +S P + I L+ SF A ++ R+ +
Sbjct: 422 ---PVASPF-----HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSG 473
Query: 330 SKMSKLADKDDECVFTWKLFSGWDYMIGNAETAQNRTSSIILGF 373
S ++ D C+ + W ET ++ IL F
Sbjct: 474 SISERIVD----CIIRLPVK--W-------ETTTQFKATHILDF 504
Score = 35.8 bits (82), Expect = 0.051
Identities = 69/436 (15%), Positives = 130/436 (29%), Gaps = 159/436 (36%)
Query: 234 FILALGLILF-VTIP-ELLSNPTDCREM-KKPLPE--------EEKESR-KLYTLF---- 277
L+ G + + +P + +E K LPE +E + +L F
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYV 68
Query: 278 ----------EFEGILKYSPIFY--GYYNNQD--------NSRYKTPLAFFIVTLLLYIY 317
+F+ +L + Y D T L + Y
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY-I 127
Query: 318 SFVAILKRMAANSKMSKL---ADKDDECVFTWKLFSGWDYMIGNAETAQNRTSSIILGFK 374
+ + KR S L + + + +F G GN + F+
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQLVA--IFGGQ----GNTDD----------YFE 171
Query: 375 EALVEEAEKQRDHLSWKIICIRIIVNI---LVVFLLGISAYTIIEVVSRSQDPNRPQTVW 431
E +R + LV L+ SA T+ E++ + D +
Sbjct: 172 E-------------------LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK----- 207
Query: 432 HKNEAVVVIWIIGVTFPR---LLEKLGNLEQLHPRKHLRMLLASFHLLFLLGISAYTII- 487
F + +LE L N + +L + S L+ ++ ++ Y +
Sbjct: 208 --------------VFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTA 253
Query: 488 --------EVVSRSQDP-NRPQTV-----------W---HKN--EAVVVIWIIGV----T 518
E+ S + Q + W + +A+ V++ IGV
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA 313
Query: 519 FPR-------LLEKLGNLEQL-HPRKHLRMLLARNEYSESIGCQIIKQDDVTQFQRIIDS 570
+P L + L N E + P ML N + Q+ V Q ++
Sbjct: 314 YPNTSLPPSILEDSLENNEGVPSP-----MLSISN----------LTQEQV---QDYVNK 355
Query: 571 LDSSVDLTRYACQIYL 586
+S + + Q+ +
Sbjct: 356 TNSHLPAGK---QVEI 368
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 37.8 bits (87), Expect = 0.004
Identities = 7/29 (24%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 587 IKKQEEEKEEDLEEMEKEEVEEEKKEMKK 615
I+K EE+ + L+E++ + ++E ++
Sbjct: 87 IRKWREEQRKRLQELDAAS-KVMEQEWRE 114
Score = 32.4 bits (73), Expect = 0.25
Identities = 8/28 (28%), Positives = 19/28 (67%)
Query: 588 KKQEEEKEEDLEEMEKEEVEEEKKEMKK 615
+K+ +E + + ME+E E+ KK++++
Sbjct: 95 RKRLQELDAASKVMEQEWREKAKKDLEE 122
Score = 30.1 bits (67), Expect = 1.4
Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 17/68 (25%)
Query: 59 ENIRLHKEVLSNVKQQP-------WSMRRKLKLVQQAKSYI----KRHEGELQERLAQSR 107
E+IR +E +Q+ S + + ++AK + +R ++++ +R
Sbjct: 85 ESIRKWRE-----EQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNR 139
Query: 108 -STKDFLA 114
+ K F
Sbjct: 140 IADKAFYQ 147
Score = 29.4 bits (65), Expect = 2.3
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Query: 588 KKQEEEKEE---DLEEMEK---EEVEEEKKEMKK 615
++E +E+ DLEE + E+VE+ K +
Sbjct: 107 VMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRI 140
Score = 29.0 bits (64), Expect = 3.8
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 8/38 (21%)
Query: 586 LIKKQEEE--KEEDLEEMEKEEVEE------EKKEMKK 615
L + E++ E K+++EE E+ E K
Sbjct: 98 LQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135
>2yev_B Cytochrome C oxidase subunit 2; electron transport; HET: FME 5PL
HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}
Length = 337
Score = 30.9 bits (70), Expect = 1.1
Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Query: 371 LGFKEALVEEAEKQRDHLSWKIICIRIIVNILVVFLLGISAYTIIEVVSRSQDPNRPQTV 430
+ ++ L + ++ ++V L AY + +R +D P
Sbjct: 22 VAITHPGGSFNQEV-AFLFPWVYFFSFLIFLVVAGSL---AYVTWKFRARPEDQEEPPQ- 76
Query: 431 WHKNEAVVVIWII 443
H N+ + V+W +
Sbjct: 77 IHGNDRLEVVWTL 89
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 30.6 bits (70), Expect = 1.2
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 584 IYLIKKQEEEKEEDLEEMEKEEVEEEKKEMKK 615
IY+ + E EE +EE E + E+E + +
Sbjct: 211 IYVWSSKTETVEEPMEEEEAAKEEKEDSDDEA 242
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 29.5 bits (65), Expect = 2.4
Identities = 7/29 (24%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 587 IKKQEEEKEEDLEEMEKEEVEEEKKEMKK 615
I+K EE+ + L+E++ + ++E ++
Sbjct: 102 IRKWREEQRKRLQELDAAS-KVMEQEWRE 129
>3lvt_A Glycosyl hydrolase, family 38; PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.55A {Enterococcus faecalis}
Length = 899
Score = 29.8 bits (66), Expect = 3.0
Identities = 8/57 (14%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Query: 48 GGGGGTDEQVVENIRLHKEVLSNVKQQPWSMRRKLK-LVQQAKSYIKRHEGELQERL 103
+ + I L E+ + + LK + ++ + GEL +
Sbjct: 233 VDHQPVQRDITKAIALANELFPEYEFIHSNFDDYLKAVQEELPEDLGTVTGELTSQE 289
>3peh_A Endoplasmin homolog; structural genomics, structural genomics
consortium, SGC, HE protein, chaperone, ATP binding;
HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Length = 281
Score = 29.1 bits (66), Expect = 3.7
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 584 IYLIKKQEEEKEEDLEEMEKEEVEEEKKEMKK 615
IYL+ + +E + + + +K
Sbjct: 226 IYLLHENVYTEEVLADIAKDMVNDPNYDSVKV 257
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F*
1p84_F* 2ibz_H* 1kyo_F*
Length = 146
Score = 28.3 bits (62), Expect = 4.4
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 588 KKQEEEKEEDLEEMEKEEVEEE 609
+ E+E E+D ++ +++E EEE
Sbjct: 50 DEDEDEDEDDDDDDDEDEEEEE 71
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 29.0 bits (65), Expect = 5.9
Identities = 15/95 (15%), Positives = 35/95 (36%), Gaps = 3/95 (3%)
Query: 521 RLLEKLGNLEQLHPRKHLRMLLARNEYSESIGCQIIKQDDVTQFQRIIDSLDSSVDLTRY 580
L ++ L+ +K + A + + + + + I L ++ +
Sbjct: 1078 ELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKA 1137
Query: 581 ACQIYLIKKQEEEKEEDLEEMEKEEVEEEKKEMKK 615
A +KQ+ + E+LE + K E+E+
Sbjct: 1138 ARN--KAEKQKRDLSEELEAL-KTELEDTLDTTAT 1169
>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA
complex; 3.15A {Methanothermobacterthermautotrophicus}
SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Length = 619
Score = 28.7 bits (64), Expect = 6.5
Identities = 12/80 (15%), Positives = 28/80 (35%), Gaps = 2/80 (2%)
Query: 479 LGISAYTIIEVVSRSQDPNRPQTVWHKNEAVVVIWIIGVTFPRLLEKLGNLEQLHPRKHL 538
G+S ++V R+ + + V+ ++ T L + +++ L L
Sbjct: 458 YGLSEDLASQLVKRNLVDEFEALTEFRVDTTVIASLLAYTLRELRREGHDVDGLGL-DEL 516
Query: 539 RMLLARNEYSESIGCQIIKQ 558
R + E I ++
Sbjct: 517 RDAIKLLE-VGKISKDALRD 535
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 28.5 bits (64), Expect = 7.8
Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 544 RNEYSESIGCQIIKQDDVTQFQRIIDSLDSSVDLTRYAC---QIYLIKKQEEEKEEDLEE 600
+N S++IG ++ K++ V + + +++ S DLT A ++ IKK +E + +
Sbjct: 57 KNLCSKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAILK 116
Query: 601 MEKEEVEEEKK 611
+ E ++ E +
Sbjct: 117 CDAERIKLEAE 127
>3nkh_A Integrase; alpha-fold, MRSA protein, structural genomics, PSI-2,
protei structure initiative; 2.50A {Staphylococcus
aureus subsp}
Length = 244
Score = 28.1 bits (63), Expect = 8.2
Identities = 9/56 (16%), Positives = 17/56 (30%)
Query: 259 MKKPLPEEEKESRKLYTLFEFEGILKYSPIFYGYYNNQDNSRYKTPLAFFIVTLLL 314
+ +S L E E I+K ++ + R+ +A L
Sbjct: 11 VDLGTENLYFQSNAYLELNEIESIIKDINTKAQKMHSGIHKRFYLFVALMTEFQAL 66
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.409
Gapped
Lambda K H
0.267 0.0766 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,721,403
Number of extensions: 608278
Number of successful extensions: 1686
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1648
Number of HSP's successfully gapped: 50
Length of query: 615
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 516
Effective length of database: 3,937,614
Effective search space: 2031808824
Effective search space used: 2031808824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.8 bits)