RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13710
(615 letters)
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component
SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 129
Score = 27.8 bits (62), Expect = 1.7
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 11/64 (17%)
Query: 558 QDDVTQFQRIIDSLDSSVDLTRYACQI-YLI------KKQEEEKEEDLEEMEKE--EVEE 608
+F ID L S D+ QI LI EE+ ++ ++K+ EVE+
Sbjct: 48 VVPPEEFSNTIDEL--STDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVED 105
Query: 609 EKKE 612
EK E
Sbjct: 106 EKIE 109
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit,
N-terminal domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 261
Score = 28.2 bits (63), Expect = 2.7
Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 19/95 (20%)
Query: 159 YFTFLRWLFFVNFILALGLILFVTIPEEWQHSKRELANVMNLLIPWELRIKEIESHFGSA 218
+F + F+ I A+ ++ + + + + + I H
Sbjct: 179 FFALHYLVPFI--IAAMVIMHLMALHIHGSSNP----------LGITGNLDRIPMH---- 222
Query: 219 VASYFTFLRWLFFVNFILALGLILFVTIPELLSNP 253
SYF F + F+L L L +F + P L +P
Sbjct: 223 --SYFIFKDLVTVFLFMLILALFVFYS-PNTLGHP 254
>d1clca1 a.102.1.2 (A:135-575) CelD cellulase, C-terminal domain
{Clostridium thermocellum [TaxId: 1515]}
Length = 441
Score = 28.5 bits (63), Expect = 2.7
Identities = 11/68 (16%), Positives = 26/68 (38%), Gaps = 8/68 (11%)
Query: 291 GYYNNQDNSRYKTPLAFFIVTLLLYIYSFVAILKRMAANSKMS--KLADKDDECVFTWKL 348
G+++ D ++Y + ++ L F L+ +A + D DE +
Sbjct: 61 GWHDAGDYNKYVVNAGITVGSMFLAWEHFKDQLEPVALEIPEKNNSIPDFLDELKY---- 116
Query: 349 FSGWDYMI 356
D+++
Sbjct: 117 --EIDWIL 122
>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
Length = 97
Score = 26.6 bits (59), Expect = 3.3
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 582 CQIYLIKKQEEEKEEDLEEMEKEEVEEEKKEMKK 615
++ +KQ EE + L +K +E ++
Sbjct: 35 HLLHSTRKQVEEAGDKLPADDKTAIESALTALET 68
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 27.7 bits (61), Expect = 3.3
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 545 NEYSESIGCQIIKQDDVTQFQRIIDSLDSSVDLTRYACQIYLIKKQ-------EEEKEED 597
E+ E + D + +I +L V ++ ++++ EE E+
Sbjct: 168 REFLEKNYTDEAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQSLKILNPEEIEKY 227
Query: 598 LEEMEKEEVEEEKKE 612
+ E+EKE+ E EKK+
Sbjct: 228 VAEIEKEKEENEKKK 242
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 27.8 bits (61), Expect = 3.8
Identities = 7/73 (9%), Positives = 30/73 (41%)
Query: 543 ARNEYSESIGCQIIKQDDVTQFQRIIDSLDSSVDLTRYACQIYLIKKQEEEKEEDLEEME 602
+ +Y E I ++ + + + +S+ ++ T + + E + + +
Sbjct: 160 LKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQAS 219
Query: 603 KEEVEEEKKEMKK 615
+ + E +++ ++
Sbjct: 220 AKMLHEMQRKNEQ 232
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit
II {Escherichia coli [TaxId: 562]}
Length = 91
Score = 26.3 bits (58), Expect = 4.0
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 4/63 (6%)
Query: 381 AEKQRDHLSWKIICIRIIVNILVVFLLGISAYTIIEVVSRSQDPNRPQTVWHKNEAVVVI 440
+QR L + +IV I + + A+ P H N+ V+
Sbjct: 11 GLEQRS-LILTAFGLMLIVVIPAILMAVGFAWKYRAS--NKDAKYSPNWS-HSNKVEAVV 66
Query: 441 WII 443
W +
Sbjct: 67 WTV 69
>d1s3qa1 a.25.1.1 (A:3-164) Non-hem ferritin {Archaeon Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 162
Score = 26.8 bits (59), Expect = 4.9
Identities = 12/88 (13%), Positives = 30/88 (34%), Gaps = 10/88 (11%)
Query: 530 EQLHPRKHLRMLLARNEYSESIGCQIIKQDDVTQFQRIIDSLDSSVDLTRYACQIYLIKK 589
E +H K + R + + + +++ + + + + +
Sbjct: 50 ELMHAMKMFDFVSERGGRVKLYAVE----EPPSEWDSPLAAFEHVYEHEVNVTKRIHELV 105
Query: 590 QEEEKEED------LEEMEKEEVEEEKK 611
+ +E+D L+ E+VEEE
Sbjct: 106 EMAMQEKDFATYNFLQWYVAEQVEEEAS 133
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 268
Score = 26.9 bits (59), Expect = 6.2
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 586 LIKKQEEEKEEDLEEMEKEEVEEEKKEMKK 615
++E E++ LE+++ EE+ E+ +
Sbjct: 216 KATQEEVEEKNILEKVKAAMTEEDLAELAR 245
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit,
N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 246
Score = 26.6 bits (59), Expect = 7.2
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 222 YFTFLRWLFFVNFILALGLILFVTIPELLSNP 253
Y+T L + ILAL L++ P+LL +P
Sbjct: 209 YYTIKDILGALLLILALMLLVLFA-PDLLGDP 239
>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 245
Score = 26.5 bits (58), Expect = 9.7
Identities = 14/77 (18%), Positives = 32/77 (41%)
Query: 539 RMLLARNEYSESIGCQIIKQDDVTQFQRIIDSLDSSVDLTRYACQIYLIKKQEEEKEEDL 598
A+ E + ++ +D V + +II + V + ++ + + + E +
Sbjct: 168 ARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIV 227
Query: 599 EEMEKEEVEEEKKEMKK 615
+ +EE E+ KE K
Sbjct: 228 PKDIREEAEKYAKESLK 244
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.409
Gapped
Lambda K H
0.267 0.0659 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,390,832
Number of extensions: 117444
Number of successful extensions: 365
Number of sequences better than 10.0: 1
Number of HSP's gapped: 361
Number of HSP's successfully gapped: 37
Length of query: 615
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 524
Effective length of database: 1,158,166
Effective search space: 606878984
Effective search space used: 606878984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.5 bits)