Query psy13711
Match_columns 580
No_of_seqs 237 out of 430
Neff 2.4
Searched_HMMs 46136
Date Fri Aug 16 18:32:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13711.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13711hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4304|consensus 100.0 5.9E-38 1.3E-42 304.6 17.8 120 264-427 25-153 (250)
2 PF07527 Hairy_orange: Hairy O 99.2 6.5E-12 1.4E-16 93.5 3.9 43 336-422 1-43 (43)
3 PF00010 HLH: Helix-loop-helix 99.1 2.7E-11 5.9E-16 92.0 3.6 55 271-328 1-55 (55)
4 smart00511 ORANGE Orange domai 99.1 8.5E-11 1.9E-15 87.8 4.6 44 336-423 1-44 (45)
5 cd00083 HLH Helix-loop-helix d 99.1 1.9E-10 4.1E-15 86.8 4.7 55 270-329 3-57 (60)
6 PF07527 Hairy_orange: Hairy O 98.9 1.1E-10 2.5E-15 86.9 -1.3 43 44-130 1-43 (43)
7 smart00353 HLH helix loop heli 98.9 2.9E-09 6.3E-14 79.5 5.0 48 277-329 2-49 (53)
8 smart00511 ORANGE Orange domai 98.7 2.4E-09 5.2E-14 80.1 0.9 44 44-131 1-44 (45)
9 KOG1318|consensus 98.6 2.9E-08 6.3E-13 104.1 4.5 60 266-329 228-287 (411)
10 KOG3561|consensus 98.6 6.9E-08 1.5E-12 107.8 5.9 60 266-329 15-74 (803)
11 KOG4304|consensus 97.8 6E-06 1.3E-10 81.9 1.5 49 40-132 102-150 (250)
12 KOG1319|consensus 97.5 7.3E-05 1.6E-09 73.3 3.9 60 269-329 60-119 (229)
13 KOG3560|consensus 97.3 0.00018 3.9E-09 78.8 3.7 48 275-326 29-76 (712)
14 KOG2483|consensus 95.0 0.035 7.6E-07 55.4 5.2 56 269-329 57-112 (232)
15 KOG2588|consensus 94.9 0.017 3.7E-07 66.7 3.0 53 269-328 274-326 (953)
16 KOG0561|consensus 93.0 0.12 2.7E-06 54.2 4.6 51 270-326 59-109 (373)
17 KOG4029|consensus 90.5 0.17 3.6E-06 49.0 2.3 52 274-329 112-163 (228)
18 KOG3960|consensus 89.9 0.39 8.4E-06 49.5 4.3 51 274-330 121-171 (284)
19 KOG3910|consensus 89.5 1.1 2.5E-05 49.8 7.7 56 267-326 522-577 (632)
20 KOG3558|consensus 77.3 2.1 4.5E-05 49.2 3.3 54 271-328 46-99 (768)
21 PLN03217 transcription factor 76.1 5.7 0.00012 35.7 5.0 45 284-330 20-64 (93)
22 KOG4395|consensus 56.9 15 0.00033 38.4 4.4 52 269-325 172-223 (285)
23 KOG3559|consensus 55.6 11 0.00023 41.8 3.3 46 278-327 8-53 (598)
24 PF05972 APC_15aa: APC 15 resi 41.2 10 0.00022 24.9 0.3 12 562-573 2-13 (16)
25 KOG4622|consensus 40.5 17 0.00037 37.4 1.9 38 114-151 55-94 (291)
26 PF13490 zf-HC2: Putative zinc 28.4 39 0.00086 23.9 1.6 18 110-127 15-32 (36)
27 PF12644 DUF3782: Protein of u 28.1 2.9E+02 0.0062 21.8 6.6 17 333-349 46-62 (64)
28 PF08209 Sgf11: Sgf11 (transcr 27.7 30 0.00066 25.9 0.9 12 117-128 17-28 (33)
29 PF15392 Joubert: Joubert synd 21.3 68 0.0015 34.5 2.4 34 265-298 50-83 (329)
No 1
>KOG4304|consensus
Probab=100.00 E-value=5.9e-38 Score=304.62 Aligned_cols=120 Identities=40% Similarity=0.628 Sum_probs=107.0
Q ss_pred CCCchhhhhccCchhHHhhHHHHHHhHHHHHHHhhhhhccccccccchhhhHHHHHHHHHHHhhhcc------c---hhh
Q psy13711 264 NSIPPALKRANKPLMEKRRRARINQSLALLKALILDSAKTENTKHSKLEKADILELTVRHLQRQKIL------S---SDI 334 (580)
Q Consensus 264 ss~~~~~RK~~KPLmEKRRRARIN~SLdELKsLLpda~k~d~~~~SKLEKADILEMTVkHLQrlQal------a---s~~ 334 (580)
..+..++||++|||||||||||||+||+|||+||+++.+++.++++||||||||||||+|||+++.. . ...
T Consensus 25 ~~~~~~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~~~~~~~~~~~ 104 (250)
T KOG4304|consen 25 SSKTRQYRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQAAAQAAPAALP 104 (250)
T ss_pred chhhHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 3567899999999999999999999999999999999999999999999999999999999987642 1 245
Q ss_pred hhHHHHHHHHHHHHHhhccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHhhhcCCCCCCChhHHHHHHHH
Q psy13711 335 RSKYKAGYEECSREVSRFLETPELHLGLSSTTSSTPTPSGTGNKALPLPSKPTPSSLALASLMSGEPVIDSGVRQRLFRH 414 (580)
Q Consensus 335 ~drFraGFrECa~EVsRFLSs~E~~lGl~~~~~~~~~p~~tgn~~~~~~~~~tp~~~~~~~l~s~~~~vd~~vr~RLl~H 414 (580)
.+.|+.||++|+.||.|||+.+++ +|.+++.||+.|
T Consensus 105 ~d~f~~Gf~ec~~EVsr~ls~~~~--------------------------------------------~~~~~~~~L~~H 140 (250)
T KOG4304|consen 105 VDSFRAGFRECAAEVSRYLSICPG--------------------------------------------MDAAKGTRLLTH 140 (250)
T ss_pred chhhhccHHHHHHHHHHHHhhCCC--------------------------------------------CChHHHhHHHHH
Confidence 799999999999999999998753 556999999999
Q ss_pred HHHhhhccccccc
Q psy13711 415 LENCMSEIDLDFS 427 (580)
Q Consensus 415 L~~c~s~i~~~~~ 427 (580)
|.+|++++.....
T Consensus 141 L~~~~~~~~~~~~ 153 (250)
T KOG4304|consen 141 LQAHLAQLEQSTA 153 (250)
T ss_pred HHHHhhcccCccC
Confidence 9999999887443
No 2
>PF07527 Hairy_orange: Hairy Orange; InterPro: IPR003650 This domain confers specificity among members of the Hairy/E(SPL) family. HES-2 (hairy and enhancer of split 2) is a transcription factor, and the hairy protein is a pair-rule protein that regulates embryonic segmentation and adult bristle patterning. These proteins are transcriptional repressors of genes that require the BHLH protein for their transcription.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DB7_A.
Probab=99.23 E-value=6.5e-12 Score=93.50 Aligned_cols=43 Identities=56% Similarity=1.053 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHhhccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHhhhcCCCCCCChhHHHHHHHHH
Q psy13711 336 SKYKAGYEECSREVSRFLETPELHLGLSSTTSSTPTPSGTGNKALPLPSKPTPSSLALASLMSGEPVIDSGVRQRLFRHL 415 (580)
Q Consensus 336 drFraGFrECa~EVsRFLSs~E~~lGl~~~~~~~~~p~~tgn~~~~~~~~~tp~~~~~~~l~s~~~~vd~~vr~RLl~HL 415 (580)
++|++||++|++||.+||+..+ ++|+++++||++||
T Consensus 1 ~~y~~Gy~~C~~Ev~~fL~~~~--------------------------------------------~~~~~~~~rLl~HL 36 (43)
T PF07527_consen 1 QKYRAGYSECLNEVSRFLSSVE--------------------------------------------GVDPGVRARLLSHL 36 (43)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTS-----------------------------------------------THHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhcCC--------------------------------------------CCChHHHHHHHHHH
Confidence 4799999999999999997653 36789999999999
Q ss_pred HHhhhcc
Q psy13711 416 ENCMSEI 422 (580)
Q Consensus 416 ~~c~s~i 422 (580)
.+|+++|
T Consensus 37 ~~~~~~~ 43 (43)
T PF07527_consen 37 QSCLNQI 43 (43)
T ss_dssp HHHHHH-
T ss_pred HHHhcCC
Confidence 9999875
No 3
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.15 E-value=2.7e-11 Score=92.02 Aligned_cols=55 Identities=29% Similarity=0.455 Sum_probs=48.0
Q ss_pred hhccCchhHHhhHHHHHHhHHHHHHHhhhhhccccccccchhhhHHHHHHHHHHHhhh
Q psy13711 271 KRANKPLMEKRRRARINQSLALLKALILDSAKTENTKHSKLEKADILELTVRHLQRQK 328 (580)
Q Consensus 271 RK~~KPLmEKRRRARIN~SLdELKsLLpda~k~d~~~~SKLEKADILEMTVkHLQrlQ 328 (580)
||..|...||+||++||.++++|+.+|+.+. .....|++|++||+.||+|++.+|
T Consensus 1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~---~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 1 RRQKHNERERRRRDRINDCFDELRELLPSCS---AGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHH---CCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhccchh---ccccccCCHHHHHHHHHHHHHHhC
Confidence 5777899999999999999999999999752 123579999999999999998865
No 4
>smart00511 ORANGE Orange domain. This domain confers specificity among members of the Hairy/E(SPL) family.
Probab=99.10 E-value=8.5e-11 Score=87.81 Aligned_cols=44 Identities=41% Similarity=0.755 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHhhccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHhhhcCCCCCCChhHHHHHHHHH
Q psy13711 336 SKYKAGYEECSREVSRFLETPELHLGLSSTTSSTPTPSGTGNKALPLPSKPTPSSLALASLMSGEPVIDSGVRQRLFRHL 415 (580)
Q Consensus 336 drFraGFrECa~EVsRFLSs~E~~lGl~~~~~~~~~p~~tgn~~~~~~~~~tp~~~~~~~l~s~~~~vd~~vr~RLl~HL 415 (580)
++|++||++|++||.+||+..+ ++|..+|.||++||
T Consensus 1 ~~y~~Gy~~C~~Ev~~fLs~~~--------------------------------------------~~~~~~~~~Ll~HL 36 (45)
T smart00511 1 SSFRSGYRECANEVSRFLSQLP--------------------------------------------GTDPDVRARLLSHL 36 (45)
T ss_pred ChHHHHHHHHHHHHHHHHhcCC--------------------------------------------CCChHHHHHHHHHH
Confidence 4799999999999999998753 46789999999999
Q ss_pred HHhhhccc
Q psy13711 416 ENCMSEID 423 (580)
Q Consensus 416 ~~c~s~i~ 423 (580)
.+|+.++.
T Consensus 37 ~~~~~~~~ 44 (45)
T smart00511 37 QTHLNQLL 44 (45)
T ss_pred HHHHHhhc
Confidence 99998764
No 5
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.06 E-value=1.9e-10 Score=86.83 Aligned_cols=55 Identities=33% Similarity=0.458 Sum_probs=48.9
Q ss_pred hhhccCchhHHhhHHHHHHhHHHHHHHhhhhhccccccccchhhhHHHHHHHHHHHhhhc
Q psy13711 270 LKRANKPLMEKRRRARINQSLALLKALILDSAKTENTKHSKLEKADILELTVRHLQRQKI 329 (580)
Q Consensus 270 ~RK~~KPLmEKRRRARIN~SLdELKsLLpda~k~d~~~~SKLEKADILEMTVkHLQrlQa 329 (580)
.+|..|.+.||+||++||.++++|+.+||... ...|++|+.||++||+|++.++.
T Consensus 3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~-----~~~k~~k~~iL~~a~~yI~~L~~ 57 (60)
T cd00083 3 SRREAHNLRERRRRERINDAFDELRSLLPTLP-----PSKKLSKAEILRKAVDYIKSLQE 57 (60)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCCCCHHHHHHHHHHHHHHHHH
Confidence 47888999999999999999999999999652 35799999999999999988754
No 6
>PF07527 Hairy_orange: Hairy Orange; InterPro: IPR003650 This domain confers specificity among members of the Hairy/E(SPL) family. HES-2 (hairy and enhancer of split 2) is a transcription factor, and the hairy protein is a pair-rule protein that regulates embryonic segmentation and adult bristle patterning. These proteins are transcriptional repressors of genes that require the BHLH protein for their transcription.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DB7_A.
Probab=98.91 E-value=1.1e-10 Score=86.88 Aligned_cols=43 Identities=42% Similarity=0.865 Sum_probs=35.1
Q ss_pred cccccCCCCChhhhhhhccCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHhhhcCCCCccChHHHHHHHHHH
Q psy13711 44 SDWSKGFPLCPPQVSRFLETPELHLGLSSTTSSTPTPSGTGNKALPLPSKPTPSSLALASLMSGEPVIDSGVRQRLFRHL 123 (580)
Q Consensus 44 ~~~~~gf~~c~~~v~rfl~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~rl~~hl 123 (580)
++|++||.+|..||+|||.+-+ .+|+++++||+.||
T Consensus 1 ~~y~~Gy~~C~~Ev~~fL~~~~--------------------------------------------~~~~~~~~rLl~HL 36 (43)
T PF07527_consen 1 QKYRAGYSECLNEVSRFLSSVE--------------------------------------------GVDPGVRARLLSHL 36 (43)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTS-----------------------------------------------THHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhcCC--------------------------------------------CCChHHHHHHHHHH
Confidence 4799999999999999986544 67899999999999
Q ss_pred Hhhhhcc
Q psy13711 124 ENCMSEI 130 (580)
Q Consensus 124 ~~c~~~i 130 (580)
.+|+++|
T Consensus 37 ~~~~~~~ 43 (43)
T PF07527_consen 37 QSCLNQI 43 (43)
T ss_dssp HHHHHH-
T ss_pred HHHhcCC
Confidence 9999876
No 7
>smart00353 HLH helix loop helix domain.
Probab=98.87 E-value=2.9e-09 Score=79.48 Aligned_cols=48 Identities=31% Similarity=0.508 Sum_probs=42.6
Q ss_pred hhHHhhHHHHHHhHHHHHHHhhhhhccccccccchhhhHHHHHHHHHHHhhhc
Q psy13711 277 LMEKRRRARINQSLALLKALILDSAKTENTKHSKLEKADILELTVRHLQRQKI 329 (580)
Q Consensus 277 LmEKRRRARIN~SLdELKsLLpda~k~d~~~~SKLEKADILEMTVkHLQrlQa 329 (580)
+.||+||++||.++++|+.||+... ...|++|++||++||+|++.++.
T Consensus 2 ~~Er~RR~~~n~~~~~L~~lip~~~-----~~~k~~k~~iL~~ai~yi~~L~~ 49 (53)
T smart00353 2 ARERRRRRKINEAFDELRSLLPTLP-----NNKKLSKAEILRLAIEYIKSLQE 49 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC-----CCCCCCHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999642 35799999999999999987754
No 8
>smart00511 ORANGE Orange domain. This domain confers specificity among members of the Hairy/E(SPL) family.
Probab=98.74 E-value=2.4e-09 Score=80.05 Aligned_cols=44 Identities=34% Similarity=0.609 Sum_probs=39.0
Q ss_pred cccccCCCCChhhhhhhccCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHhhhcCCCCccChHHHHHHHHHH
Q psy13711 44 SDWSKGFPLCPPQVSRFLETPELHLGLSSTTSSTPTPSGTGNKALPLPSKPTPSSLALASLMSGEPVIDSGVRQRLFRHL 123 (580)
Q Consensus 44 ~~~~~gf~~c~~~v~rfl~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~rl~~hl 123 (580)
++|++||.+|..||+|||.+-+ ++|..+|+||+.||
T Consensus 1 ~~y~~Gy~~C~~Ev~~fLs~~~--------------------------------------------~~~~~~~~~Ll~HL 36 (45)
T smart00511 1 SSFRSGYRECANEVSRFLSQLP--------------------------------------------GTDPDVRARLLSHL 36 (45)
T ss_pred ChHHHHHHHHHHHHHHHHhcCC--------------------------------------------CCChHHHHHHHHHH
Confidence 4799999999999999998554 78889999999999
Q ss_pred Hhhhhccc
Q psy13711 124 ENCMSEID 131 (580)
Q Consensus 124 ~~c~~~i~ 131 (580)
.+|+.++.
T Consensus 37 ~~~~~~~~ 44 (45)
T smart00511 37 QTHLNQLL 44 (45)
T ss_pred HHHHHhhc
Confidence 99998764
No 9
>KOG1318|consensus
Probab=98.61 E-value=2.9e-08 Score=104.07 Aligned_cols=60 Identities=27% Similarity=0.320 Sum_probs=53.5
Q ss_pred CchhhhhccCchhHHhhHHHHHHhHHHHHHHhhhhhccccccccchhhhHHHHHHHHHHHhhhc
Q psy13711 266 IPPALKRANKPLMEKRRRARINQSLALLKALILDSAKTENTKHSKLEKADILELTVRHLQRQKI 329 (580)
Q Consensus 266 ~~~~~RK~~KPLmEKRRRARIN~SLdELKsLLpda~k~d~~~~SKLEKADILEMTVkHLQrlQa 329 (580)
.+.+.||.+|.+||||||+.||..|.||..|||.+. ....|++|..||.-+|+|++.+|.
T Consensus 228 ~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~----~~~~~~nKgtILk~s~dYIr~Lqq 287 (411)
T KOG1318|consen 228 ERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCN----SEDMKSNKGTILKASCDYIRELQQ 287 (411)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCC----cchhhcccchhhHHHHHHHHHHHH
Confidence 456779999999999999999999999999999875 456799999999999999987654
No 10
>KOG3561|consensus
Probab=98.56 E-value=6.9e-08 Score=107.78 Aligned_cols=60 Identities=30% Similarity=0.406 Sum_probs=52.4
Q ss_pred CchhhhhccCchhHHhhHHHHHHhHHHHHHHhhhhhccccccccchhhhHHHHHHHHHHHhhhc
Q psy13711 266 IPPALKRANKPLMEKRRRARINQSLALLKALILDSAKTENTKHSKLEKADILELTVRHLQRQKI 329 (580)
Q Consensus 266 ~~~~~RK~~KPLmEKRRRARIN~SLdELKsLLpda~k~d~~~~SKLEKADILEMTVkHLQrlQa 329 (580)
.+.+.+|.+|..+|||||+.+|..|+||..||+.+.. ...|++|-.||+|||+|||..+.
T Consensus 15 ~k~r~~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~----~~RK~DK~tVLr~aV~~lr~~k~ 74 (803)
T KOG3561|consen 15 SKDRKKRENRSEIEKRRRDQMNKYIEELSEMVPTNAS----LSRKPDKLTVLRMAVDHLRLIKE 74 (803)
T ss_pred chhhhccccchhHHHHHHHHHHHHHHHHHHhhhcchh----cccCchHHHHHHHHHHHHHHHhh
Confidence 3445668899999999999999999999999998753 46899999999999999997654
No 11
>KOG4304|consensus
Probab=97.83 E-value=6e-06 Score=81.86 Aligned_cols=49 Identities=29% Similarity=0.535 Sum_probs=44.3
Q ss_pred eeeecccccCCCCChhhhhhhccCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHhhhcCCCCccChHHHHHH
Q psy13711 40 YLIVSDWSKGFPLCPPQVSRFLETPELHLGLSSTTSSTPTPSGTGNKALPLPSKPTPSSLALASLMSGEPVIDSGVRQRL 119 (580)
Q Consensus 40 ~~~~~~~~~gf~~c~~~v~rfl~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~rl 119 (580)
-.++..|+.||.+|+.||+|||.+.| ++|..++.||
T Consensus 102 ~~~~d~f~~Gf~ec~~EVsr~ls~~~--------------------------------------------~~~~~~~~~L 137 (250)
T KOG4304|consen 102 ALPVDSFRAGFRECAAEVSRYLSICP--------------------------------------------GMDAAKGTRL 137 (250)
T ss_pred cccchhhhccHHHHHHHHHHHHhhCC--------------------------------------------CCChHHHhHH
Confidence 35699999999999999999999888 6777999999
Q ss_pred HHHHHhhhhcccc
Q psy13711 120 FRHLENCMSEIDL 132 (580)
Q Consensus 120 ~~hl~~c~~~i~~ 132 (580)
+.||.+|+.++..
T Consensus 138 ~~HL~~~~~~~~~ 150 (250)
T KOG4304|consen 138 LTHLQAHLAQLEQ 150 (250)
T ss_pred HHHHHHHhhcccC
Confidence 9999999988764
No 12
>KOG1319|consensus
Probab=97.53 E-value=7.3e-05 Score=73.28 Aligned_cols=60 Identities=25% Similarity=0.295 Sum_probs=50.7
Q ss_pred hhhhccCchhHHhhHHHHHHhHHHHHHHhhhhhccccccccchhhhHHHHHHHHHHHhhhc
Q psy13711 269 ALKRANKPLMEKRRRARINQSLALLKALILDSAKTENTKHSKLEKADILELTVRHLQRQKI 329 (580)
Q Consensus 269 ~~RK~~KPLmEKRRRARIN~SLdELKsLLpda~k~d~~~~SKLEKADILEMTVkHLQrlQa 329 (580)
+.||..|-.-|++||+-||+--+.|+.|||.|...+. ..-||-||-||..+++|++.++.
T Consensus 60 ~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds-~g~KlskA~ILqksidyi~~L~~ 119 (229)
T KOG1319|consen 60 DRRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDS-IGQKLSKAIILQKTIDYIQFLHK 119 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHhccccccccc-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999865443 23499999999999999976643
No 13
>KOG3560|consensus
Probab=97.29 E-value=0.00018 Score=78.79 Aligned_cols=48 Identities=35% Similarity=0.398 Sum_probs=40.7
Q ss_pred CchhHHhhHHHHHHhHHHHHHHhhhhhccccccccchhhhHHHHHHHHHHHh
Q psy13711 275 KPLMEKRRRARINQSLALLKALILDSAKTENTKHSKLEKADILELTVRHLQR 326 (580)
Q Consensus 275 KPLmEKRRRARIN~SLdELKsLLpda~k~d~~~~SKLEKADILEMTVkHLQr 326 (580)
|.-=-||-|||+|.-|+.|..||+- ++.-.+||+|..||++.|.|||-
T Consensus 29 kSNPSKRHRdRLNaELD~lAsLLPf----pqdiisKLDkLSVLRLSVSyLr~ 76 (712)
T KOG3560|consen 29 KSNPSKRHRDRLNAELDHLASLLPF----PQDIISKLDKLSVLRLSVSYLRV 76 (712)
T ss_pred cCCcchhHHHHhhhHHHHHHHhcCC----CHHHHhhhhhhhhhhhhHHHHHH
Confidence 3334599999999999999999984 34567999999999999999974
No 14
>KOG2483|consensus
Probab=95.02 E-value=0.035 Score=55.42 Aligned_cols=56 Identities=27% Similarity=0.348 Sum_probs=44.1
Q ss_pred hhhhccCchhHHhhHHHHHHhHHHHHHHhhhhhccccccccchhhhHHHHHHHHHHHhhhc
Q psy13711 269 ALKRANKPLMEKRRRARINQSLALLKALILDSAKTENTKHSKLEKADILELTVRHLQRQKI 329 (580)
Q Consensus 269 ~~RK~~KPLmEKRRRARIN~SLdELKsLLpda~k~d~~~~SKLEKADILEMTVkHLQrlQa 329 (580)
...|..|..+||+|||.|-.|++.||.+||.... ..+=.-+-||..++.|++.++.
T Consensus 57 ~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~-----~~~~t~lsiL~kA~~~i~~l~~ 112 (232)
T KOG2483|consen 57 ASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNG-----ETRSTTLSILDKALEHIQSLER 112 (232)
T ss_pred CcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCC-----cchhhhhHhhhhHHHHHHHHHh
Confidence 3456678999999999999999999999996531 1122278999999999987653
No 15
>KOG2588|consensus
Probab=94.92 E-value=0.017 Score=66.65 Aligned_cols=53 Identities=28% Similarity=0.453 Sum_probs=47.3
Q ss_pred hhhhccCchhHHhhHHHHHHhHHHHHHHhhhhhccccccccchhhhHHHHHHHHHHHhhh
Q psy13711 269 ALKRANKPLMEKRRRARINQSLALLKALILDSAKTENTKHSKLEKADILELTVRHLQRQK 328 (580)
Q Consensus 269 ~~RK~~KPLmEKRRRARIN~SLdELKsLLpda~k~d~~~~SKLEKADILEMTVkHLQrlQ 328 (580)
.-||..|.+||||=|--||+.|.|||++++.. ..|+-|..+|.-+.+|++.++
T Consensus 274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~-------~aKl~kSavLr~ai~~i~dl~ 326 (953)
T KOG2588|consen 274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGT-------EAKLNKSAVLRKAIDYIEDLQ 326 (953)
T ss_pred CcccchhhHHHHHhhcchhHHHHHHHHhcCcc-------HhhhhhhhhHHHHHHHHHHhh
Confidence 35799999999999999999999999999854 469999999999999998654
No 16
>KOG0561|consensus
Probab=93.01 E-value=0.12 Score=54.22 Aligned_cols=51 Identities=31% Similarity=0.404 Sum_probs=42.6
Q ss_pred hhhccCchhHHhhHHHHHHhHHHHHHHhhhhhccccccccchhhhHHHHHHHHHHHh
Q psy13711 270 LKRANKPLMEKRRRARINQSLALLKALILDSAKTENTKHSKLEKADILELTVRHLQR 326 (580)
Q Consensus 270 ~RK~~KPLmEKRRRARIN~SLdELKsLLpda~k~d~~~~SKLEKADILEMTVkHLQr 326 (580)
-||....-=||||=.-||.-...||.||+... -.||-||-||+.|.+|+..
T Consensus 59 mRReIANsNERRRMQSINAGFqsLr~LlPr~e------GEKLSKAAILQQTa~yI~~ 109 (373)
T KOG0561|consen 59 MRREIANSNERRRMQSINAGFQSLRALLPRKE------GEKLSKAAILQQTADYIHQ 109 (373)
T ss_pred HHHHhhcchHHHHHHhhhHHHHHHHHhcCccc------chhhHHHHHHHHHHHHHHH
Confidence 45555566688998999999999999999653 3599999999999999864
No 17
>KOG4029|consensus
Probab=90.55 E-value=0.17 Score=48.98 Aligned_cols=52 Identities=23% Similarity=0.333 Sum_probs=43.0
Q ss_pred cCchhHHhhHHHHHHhHHHHHHHhhhhhccccccccchhhhHHHHHHHHHHHhhhc
Q psy13711 274 NKPLMEKRRRARINQSLALLKALILDSAKTENTKHSKLEKADILELTVRHLQRQKI 329 (580)
Q Consensus 274 ~KPLmEKRRRARIN~SLdELKsLLpda~k~d~~~~SKLEKADILEMTVkHLQrlQa 329 (580)
.....|++|=.-+|....+||.+||.... ...||=|.|+|.++++|++.++.
T Consensus 112 ~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~----~~kklSKveTLr~A~~YI~~L~~ 163 (228)
T KOG4029|consen 112 ARNARERQRVQSVNSAFAELRALLPTEPP----QSKKLSKVETLRLATSYIRYLTK 163 (228)
T ss_pred hhhhhhhhcccchhhhhHHHHhcCCCCCC----cccccCcccchHHHHHHHHHHHH
Confidence 34455888888999999999999996531 16799999999999999988754
No 18
>KOG3960|consensus
Probab=89.88 E-value=0.39 Score=49.49 Aligned_cols=51 Identities=25% Similarity=0.440 Sum_probs=40.4
Q ss_pred cCchhHHhhHHHHHHhHHHHHHHhhhhhccccccccchhhhHHHHHHHHHHHhhhcc
Q psy13711 274 NKPLMEKRRRARINQSLALLKALILDSAKTENTKHSKLEKADILELTVRHLQRQKIL 330 (580)
Q Consensus 274 ~KPLmEKRRRARIN~SLdELKsLLpda~k~d~~~~SKLEKADILEMTVkHLQrlQal 330 (580)
..-|-||||=.++|+..+.||+--.. ..+-+|=|-|||+-+++|+.++|.+
T Consensus 121 AATMRERRRLkKVNEAFE~LKRrT~~------NPNQRLPKVEILRsAI~YIE~Lq~L 171 (284)
T KOG3960|consen 121 AATMRERRRLKKVNEAFETLKRRTSS------NPNQRLPKVEILRSAIRYIERLQAL 171 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCC------CccccccHHHHHHHHHHHHHHHHHH
Confidence 34577888889999999999975321 2355899999999999999888764
No 19
>KOG3910|consensus
Probab=89.51 E-value=1.1 Score=49.76 Aligned_cols=56 Identities=21% Similarity=0.182 Sum_probs=40.7
Q ss_pred chhhhhccCchhHHhhHHHHHHhHHHHHHHhhhhhccccccccchhhhHHHHHHHHHHHh
Q psy13711 267 PPALKRANKPLMEKRRRARINQSLALLKALILDSAKTENTKHSKLEKADILELTVRHLQR 326 (580)
Q Consensus 267 ~~~~RK~~KPLmEKRRRARIN~SLdELKsLLpda~k~d~~~~SKLEKADILEMTVkHLQr 326 (580)
+.+-||+.-..-||-|=.-||+.+.||-+|...+.+.|+. --|.=||.++|..|-.
T Consensus 522 REkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKp----QTKLgILhqAVsVIls 577 (632)
T KOG3910|consen 522 REKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKP----QTKLGILHQAVSVILS 577 (632)
T ss_pred HHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCc----chhhhHHHHHHHHHHH
Confidence 3444666566667666566999999999998877654432 3467899999998754
No 20
>KOG3558|consensus
Probab=77.33 E-value=2.1 Score=49.24 Aligned_cols=54 Identities=28% Similarity=0.367 Sum_probs=40.8
Q ss_pred hhccCchhHHhhHHHHHHhHHHHHHHhhhhhccccccccchhhhHHHHHHHHHHHhhh
Q psy13711 271 KRANKPLMEKRRRARINQSLALLKALILDSAKTENTKHSKLEKADILELTVRHLQRQK 328 (580)
Q Consensus 271 RK~~KPLmEKRRRARIN~SLdELKsLLpda~k~d~~~~SKLEKADILEMTVkHLQrlQ 328 (580)
||..-.-..|-||-+=|.-..||+.+|+-.. .-.+.|+||.|+++|+.|||..+
T Consensus 46 rkEkSRdAARsRRsKEn~~FyeLa~~lPlp~----aisshLDkaSimRLtISyLRlrk 99 (768)
T KOG3558|consen 46 RKEKSRDAARSRRSKENEEFYELAKLLPLPA----AISSHLDKASIMRLTISYLRLRK 99 (768)
T ss_pred HhhhhhhhhhhhcccchHHHHHHHHhCCCcc----hhhhhhhhHHHHHHHHHHHHHHH
Confidence 3333334445578889999999999998432 34678999999999999998543
No 21
>PLN03217 transcription factor ATBS1; Provisional
Probab=76.10 E-value=5.7 Score=35.69 Aligned_cols=45 Identities=18% Similarity=0.258 Sum_probs=37.8
Q ss_pred HHHHHhHHHHHHHhhhhhccccccccchhhhHHHHHHHHHHHhhhcc
Q psy13711 284 ARINQSLALLKALILDSAKTENTKHSKLEKADILELTVRHLQRQKIL 330 (580)
Q Consensus 284 ARIN~SLdELKsLLpda~k~d~~~~SKLEKADILEMTVkHLQrlQal 330 (580)
+-||+-+..|+.|||+.. ...+..|.--+.||+.|..|++.++.-
T Consensus 20 dqi~dLvsKLq~llPe~r--~~r~s~k~saskvLqEtC~YIrsLhrE 64 (93)
T PLN03217 20 DQINDLIIKLQQLLPELR--DSRRSDKVSAARVLQDTCNYIRNLHRE 64 (93)
T ss_pred HHHHHHHHHHHHHChHHH--hhhccccccHHHHHHHHHHHHHHHHHH
Confidence 679999999999999864 223457999999999999999998753
No 22
>KOG4395|consensus
Probab=56.95 E-value=15 Score=38.36 Aligned_cols=52 Identities=21% Similarity=0.328 Sum_probs=43.4
Q ss_pred hhhhccCchhHHhhHHHHHHhHHHHHHHhhhhhccccccccchhhhHHHHHHHHHHH
Q psy13711 269 ALKRANKPLMEKRRRARINQSLALLKALILDSAKTENTKHSKLEKADILELTVRHLQ 325 (580)
Q Consensus 269 ~~RK~~KPLmEKRRRARIN~SLdELKsLLpda~k~d~~~~SKLEKADILEMTVkHLQ 325 (580)
..|+..-+..|+||=--+|..+++|+..+++. ...+||-|-+-|.|+..|+-
T Consensus 172 ~~rr~aanarErrrm~gLN~AfD~Lr~v~p~~-----~~d~~LSkyetLqmaq~yi~ 223 (285)
T KOG4395|consen 172 SHRRLAANARERRRMNGLNSAFDRLRLVVPDG-----DSDKKLSKYETLQMAQGYIL 223 (285)
T ss_pred HhhhcccchHHHHHhhhHHHHHHHHHHhcCCC-----CccchhhhhhHHHHHHHHHh
Confidence 45677788999999999999999999999864 23578999999999988874
No 23
>KOG3559|consensus
Probab=55.59 E-value=11 Score=41.83 Aligned_cols=46 Identities=28% Similarity=0.340 Sum_probs=38.8
Q ss_pred hHHhhHHHHHHhHHHHHHHhhhhhccccccccchhhhHHHHHHHHHHHhh
Q psy13711 278 MEKRRRARINQSLALLKALILDSAKTENTKHSKLEKADILELTVRHLQRQ 327 (580)
Q Consensus 278 mEKRRRARIN~SLdELKsLLpda~k~d~~~~SKLEKADILEMTVkHLQrl 327 (580)
-.|-||+.=|--.-||..|||-+.. -.+.|+||.|.++|-.|||..
T Consensus 8 aA~tRRekEN~EF~eLAklLPLa~A----ItsQlDKasiiRLtTsYlKmr 53 (598)
T KOG3559|consen 8 AARTRREKENYEFYELAKLLPLASA----ITSQLDKASIIRLTTSYLKMR 53 (598)
T ss_pred HHHHHHHhhcchHHHHHhhccchhh----hhhccchhhhhhHHHHHHHHH
Confidence 4577999999999999999986653 345699999999999999863
No 24
>PF05972 APC_15aa: APC 15 residue motif; InterPro: IPR009240 The 15 aa repeat is found in the APC protein family. It is involved in binding beta-catenin [] along with the IPR009223 from INTERPRO repeats. Many human cancer mutations map to the region around these motifs, and may be involved in disrupting their binding of beta-catenin.; GO: 0008013 beta-catenin binding, 0016055 Wnt receptor signaling pathway; PDB: 1JPP_C.
Probab=41.17 E-value=10 Score=24.88 Aligned_cols=12 Identities=50% Similarity=0.880 Sum_probs=4.8
Q ss_pred CCCCCccccccC
Q psy13711 562 LDQPLDFSIKRD 573 (580)
Q Consensus 562 ~~~p~~~~~~~~ 573 (580)
.|+|+|||+|-.
T Consensus 2 ~dqP~dyS~kY~ 13 (16)
T PF05972_consen 2 EDQPIDYSLKYS 13 (16)
T ss_dssp ------CCCCTT
T ss_pred Cccccchhhhcc
Confidence 589999999854
No 25
>KOG4622|consensus
Probab=40.47 E-value=17 Score=37.40 Aligned_cols=38 Identities=26% Similarity=0.537 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhhhhccc--ccchhhHHhhccccCCCCCC
Q psy13711 114 GVRQRLFRHLENCMSEID--LDFSASAEKLGITQDFSSED 151 (580)
Q Consensus 114 ~v~~rl~~hl~~c~~~i~--~~~~~~~~~~~~~~~~~~~~ 151 (580)
+.|-|++-|.|.|+|+|. .|+-+....+...-||+|+.
T Consensus 55 eqRgr~~~~iEk~ISaiqedtdwppqvrrisssgdynsgr 94 (291)
T KOG4622|consen 55 EQRGRFECHIEKCISAIQEDTDWPPQVRRISSSGDYNSGR 94 (291)
T ss_pred HHhchHHHHHHHHHHHHhcccCCCchheeccccCCcCCCc
Confidence 456789999999999986 88999999999999999984
No 26
>PF13490 zf-HC2: Putative zinc-finger; PDB: 2Z2S_F 2Q1Z_B 3HUG_T.
Probab=28.41 E-value=39 Score=23.86 Aligned_cols=18 Identities=33% Similarity=0.515 Sum_probs=13.9
Q ss_pred ccChHHHHHHHHHHHhhh
Q psy13711 110 VIDSGVRQRLFRHLENCM 127 (580)
Q Consensus 110 ~~~~~v~~rl~~hl~~c~ 127 (580)
-++...+.+|-.||..|-
T Consensus 15 ~L~~~~~~~~~~HL~~C~ 32 (36)
T PF13490_consen 15 ELSPEERARLEAHLASCP 32 (36)
T ss_dssp -S-HHHHHHHHHHHCT-H
T ss_pred CCCHHHHHHHHHHHHcCH
Confidence 478899999999999995
No 27
>PF12644 DUF3782: Protein of unknown function (DUF3782); InterPro: IPR024271 This functionally uncharacterised family of proteins is found in bacteria and archaea. Proteins in this family are typically between 91 and 186 amino acids in length.
Probab=28.08 E-value=2.9e+02 Score=21.83 Aligned_cols=17 Identities=12% Similarity=0.454 Sum_probs=13.9
Q ss_pred hhhhHHHHHHHHHHHHH
Q psy13711 333 DIRSKYKAGYEECSREV 349 (580)
Q Consensus 333 ~~~drFraGFrECa~EV 349 (580)
.....|+.||+.|+..+
T Consensus 46 ~~e~afr~G~~d~l~~~ 62 (64)
T PF12644_consen 46 ESEEAFRQGFRDGLRLL 62 (64)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45688999999999764
No 28
>PF08209 Sgf11: Sgf11 (transcriptional regulation protein); InterPro: IPR013246 The Sgf11 family is a SAGA complex subunit in Saccharomyces cerevisiae (Baker's yeast). The SAGA complex is a multisubunit protein complex involved in transcriptional regulation. SAGA combines proteins involved in interactions with DNA-bound activators and TATA-binding protein (TBP), as well as enzymes for histone acetylation and deubiquitylation [].; PDB: 3M99_B 2LO2_A 3MHH_C 3MHS_C.
Probab=27.75 E-value=30 Score=25.85 Aligned_cols=12 Identities=50% Similarity=0.952 Sum_probs=10.3
Q ss_pred HHHHHHHHhhhh
Q psy13711 117 QRLFRHLENCMS 128 (580)
Q Consensus 117 ~rl~~hl~~c~~ 128 (580)
.|+-.|||.||+
T Consensus 17 ~RfA~HLekCmg 28 (33)
T PF08209_consen 17 SRFAPHLEKCMG 28 (33)
T ss_dssp GGHHHHHHHHTC
T ss_pred hhhHHHHHHHHc
Confidence 478899999995
No 29
>PF15392 Joubert: Joubert syndrome-associated
Probab=21.31 E-value=68 Score=34.46 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=29.4
Q ss_pred CCchhhhhccCchhHHhhHHHHHHhHHHHHHHhh
Q psy13711 265 SIPPALKRANKPLMEKRRRARINQSLALLKALIL 298 (580)
Q Consensus 265 s~~~~~RK~~KPLmEKRRRARIN~SLdELKsLLp 298 (580)
++..+.||..+--|.|+||+||-+.|.+|..+-.
T Consensus 50 qRtekERrEIq~WMkRKrkERmaEYl~qlaEkR~ 83 (329)
T PF15392_consen 50 QRTEKERREIQAWMKRKRKERMAEYLKQLAEKRE 83 (329)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566778888899999999999999999987764
Done!