Query psy13711
Match_columns 580
No_of_seqs 237 out of 430
Neff 2.4
Searched_HMMs 29240
Date Fri Aug 16 18:32:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13711.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13711hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h10_A ARYL hydrocarbon recept 99.6 6.6E-16 2.3E-20 126.1 4.6 58 268-329 6-63 (73)
2 1a0a_A BHLH, protein (phosphat 99.5 2.8E-15 9.5E-20 119.0 4.3 58 271-329 2-59 (63)
3 4h10_B Circadian locomoter out 99.4 7.1E-14 2.4E-18 114.3 3.1 55 268-329 5-59 (71)
4 1an4_A Protein (upstream stimu 99.3 8.7E-13 3E-17 103.3 1.6 58 270-329 4-61 (65)
5 4ati_A MITF, microphthalmia-as 99.1 1.9E-11 6.6E-16 106.8 4.5 60 266-329 22-81 (118)
6 2db7_A Hairy/enhancer-OF-split 99.1 3.1E-11 1E-15 97.1 4.4 47 334-424 15-64 (64)
7 1am9_A Srebp-1A, protein (ster 99.1 4.2E-11 1.4E-15 98.5 4.4 54 269-329 4-57 (82)
8 4f3l_A Mclock, circadian locom 99.1 7E-11 2.4E-15 114.6 4.3 55 268-329 9-63 (361)
9 4f3l_B BMAL1B; BHLH, PAS, circ 99.0 1E-10 3.5E-15 115.1 4.1 60 266-329 8-67 (387)
10 1nkp_B MAX protein, MYC proto- 98.9 5.1E-10 1.7E-14 91.3 3.7 53 271-329 2-54 (83)
11 1hlo_A Protein (transcription 98.9 8.8E-10 3E-14 89.7 4.6 55 269-329 10-64 (80)
12 2db7_A Hairy/enhancer-OF-split 98.9 1.4E-10 4.6E-15 93.4 -1.7 46 42-131 15-63 (64)
13 1nkp_A C-MYC, MYC proto-oncoge 98.6 3.2E-08 1.1E-12 82.7 3.7 55 270-329 5-59 (88)
14 3u5v_A Protein MAX, transcript 98.5 1.4E-07 4.9E-12 77.5 6.0 56 270-329 4-59 (76)
15 1nlw_A MAD protein, MAX dimeri 98.3 2.8E-07 9.7E-12 76.1 3.1 53 272-329 2-54 (80)
16 1mdy_A Protein (MYOD BHLH doma 98.0 3E-06 1E-10 68.5 3.1 55 269-329 10-64 (68)
17 2ql2_B Neurod1, neurogenic dif 97.9 5.1E-06 1.7E-10 65.6 3.4 54 271-329 2-55 (60)
18 2lfh_A DNA-binding protein inh 97.8 5.7E-06 2E-10 67.9 2.2 48 277-329 20-67 (68)
19 4ath_A MITF, microphthalmia-as 97.2 0.00028 9.7E-09 59.7 4.0 43 283-329 4-46 (83)
20 4aya_A DNA-binding protein inh 96.6 0.0018 6E-08 56.2 4.4 62 277-343 30-95 (97)
21 2pmr_A Uncharacterized protein 20.3 2.7E+02 0.0092 23.5 6.7 65 282-353 5-78 (87)
No 1
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.58 E-value=6.6e-16 Score=126.15 Aligned_cols=58 Identities=26% Similarity=0.398 Sum_probs=52.5
Q ss_pred hhhhhccCchhHHhhHHHHHHhHHHHHHHhhhhhccccccccchhhhHHHHHHHHHHHhhhc
Q psy13711 268 PALKRANKPLMEKRRRARINQSLALLKALILDSAKTENTKHSKLEKADILELTVRHLQRQKI 329 (580)
Q Consensus 268 ~~~RK~~KPLmEKRRRARIN~SLdELKsLLpda~k~d~~~~SKLEKADILEMTVkHLQrlQa 329 (580)
.+.||.+|+++|||||+|||.+|++|+.|||.+. ...+|+|||+||++||+|||.++.
T Consensus 6 ~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~----~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 6 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCN----AMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHH----TCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHccccc----cccccccHHHHHHHHHHHHHHHhc
Confidence 4678899999999999999999999999999875 346799999999999999999875
No 2
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.54 E-value=2.8e-15 Score=118.95 Aligned_cols=58 Identities=26% Similarity=0.295 Sum_probs=51.3
Q ss_pred hhccCchhHHhhHHHHHHhHHHHHHHhhhhhccccccccchhhhHHHHHHHHHHHhhhc
Q psy13711 271 KRANKPLMEKRRRARINQSLALLKALILDSAKTENTKHSKLEKADILELTVRHLQRQKI 329 (580)
Q Consensus 271 RK~~KPLmEKRRRARIN~SLdELKsLLpda~k~d~~~~SKLEKADILEMTVkHLQrlQa 329 (580)
||.+|+++||+||+|||.++++|+.|||.+.+.+ ....|++||+||||||+||+.++.
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~-~~~~k~sKa~iL~~Ai~YIk~Lq~ 59 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQ-NVSAAPSKATTVEAACRYIRHLQQ 59 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTS-SCCCCSCTTHHHHHHHHHHHHHHT
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCccccc-ccCCcccHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999876433 235799999999999999998865
No 3
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.40 E-value=7.1e-14 Score=114.28 Aligned_cols=55 Identities=24% Similarity=0.406 Sum_probs=49.6
Q ss_pred hhhhhccCchhHHhhHHHHHHhHHHHHHHhhhhhccccccccchhhhHHHHHHHHHHHhhhc
Q psy13711 268 PALKRANKPLMEKRRRARINQSLALLKALILDSAKTENTKHSKLEKADILELTVRHLQRQKI 329 (580)
Q Consensus 268 ~~~RK~~KPLmEKRRRARIN~SLdELKsLLpda~k~d~~~~SKLEKADILEMTVkHLQrlQa 329 (580)
...+|.+|.++|||||+|||.+|.+|+.|||. ...|++|++||++||+||+.++.
T Consensus 5 ~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~-------~~~K~dK~sIL~~aI~yik~Lq~ 59 (71)
T 4h10_B 5 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPG-------NARKMDKSTVLQKSIDFLRKHKE 59 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS-------CCSCCCHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCC-------CCCCCcHHHHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999984 24699999999999999998775
No 4
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.26 E-value=8.7e-13 Score=103.31 Aligned_cols=58 Identities=29% Similarity=0.374 Sum_probs=49.8
Q ss_pred hhhccCchhHHhhHHHHHHhHHHHHHHhhhhhccccccccchhhhHHHHHHHHHHHhhhc
Q psy13711 270 LKRANKPLMEKRRRARINQSLALLKALILDSAKTENTKHSKLEKADILELTVRHLQRQKI 329 (580)
Q Consensus 270 ~RK~~KPLmEKRRRARIN~SLdELKsLLpda~k~d~~~~SKLEKADILEMTVkHLQrlQa 329 (580)
.||..|.++||+||++||.++.+|+.|||.+... ....|++||+||++||+||+.++.
T Consensus 4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~--~~~~k~~Ka~IL~~ai~YI~~Lq~ 61 (65)
T 1an4_A 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSME--STKSGQSKGGILSKASDYIQELRQ 61 (65)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCC--SSTTCCCTTTTTTTTHHHHHHHHT
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccc--cccCCCCHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999976421 123589999999999999998764
No 5
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.15 E-value=1.9e-11 Score=106.78 Aligned_cols=60 Identities=28% Similarity=0.390 Sum_probs=44.4
Q ss_pred CchhhhhccCchhHHhhHHHHHHhHHHHHHHhhhhhccccccccchhhhHHHHHHHHHHHhhhc
Q psy13711 266 IPPALKRANKPLMEKRRRARINQSLALLKALILDSAKTENTKHSKLEKADILELTVRHLQRQKI 329 (580)
Q Consensus 266 ~~~~~RK~~KPLmEKRRRARIN~SLdELKsLLpda~k~d~~~~SKLEKADILEMTVkHLQrlQa 329 (580)
.....||.+|.++|||||++||.++.+|+.|||.+.+ ...|++||+||++||+||+.++.
T Consensus 22 ~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~----~~~k~~Ka~IL~~aieYIk~Lq~ 81 (118)
T 4ati_A 22 AKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSND----PDMRWNKGTILKASVDYIRKLQR 81 (118)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHSCCC--------CCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccC----ccccCCHHHHHHHHHHHHHHHHH
Confidence 3445688999999999999999999999999997642 24699999999999999998764
No 6
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1
Probab=99.13 E-value=3.1e-11 Score=97.12 Aligned_cols=47 Identities=36% Similarity=0.653 Sum_probs=38.7
Q ss_pred hhhHHHH-HHHHHHHHHhhccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHhhhcCCCCCCC--hhHHHH
Q psy13711 334 IRSKYKA-GYEECSREVSRFLETPELHLGLSSTTSSTPTPSGTGNKALPLPSKPTPSSLALASLMSGEPVID--SGVRQR 410 (580)
Q Consensus 334 ~~drFra-GFrECa~EVsRFLSs~E~~lGl~~~~~~~~~p~~tgn~~~~~~~~~tp~~~~~~~l~s~~~~vd--~~vr~R 410 (580)
..++|++ ||++|++||.|||+.+++ || +++|+|
T Consensus 15 ~~~~yrs~Gf~eC~~EV~rfLs~~eg--------------------------------------------~d~~d~~r~r 50 (64)
T 2db7_A 15 LAMDYRSLGFRECLAEVARYLSIIEG--------------------------------------------LDASDPLRVR 50 (64)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHTSC--------------------------------------------CCTTCHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCC--------------------------------------------CCcchHHHHH
Confidence 4678995 999999999999998753 34 359999
Q ss_pred HHHHHHHhhhcccc
Q psy13711 411 LFRHLENCMSEIDL 424 (580)
Q Consensus 411 Ll~HL~~c~s~i~~ 424 (580)
||+||.+|+.+++.
T Consensus 51 Ll~HL~~~~~~~e~ 64 (64)
T 2db7_A 51 LVSHLNNYASQREA 64 (64)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHhhccCC
Confidence 99999999998863
No 7
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.10 E-value=4.2e-11 Score=98.49 Aligned_cols=54 Identities=28% Similarity=0.412 Sum_probs=49.1
Q ss_pred hhhhccCchhHHhhHHHHHHhHHHHHHHhhhhhccccccccchhhhHHHHHHHHHHHhhhc
Q psy13711 269 ALKRANKPLMEKRRRARINQSLALLKALILDSAKTENTKHSKLEKADILELTVRHLQRQKI 329 (580)
Q Consensus 269 ~~RK~~KPLmEKRRRARIN~SLdELKsLLpda~k~d~~~~SKLEKADILEMTVkHLQrlQa 329 (580)
..||..|.++|||||++||.++.+|+.|||.. ..|++||+||++||+||+.++.
T Consensus 4 ~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~-------~~k~~Ka~IL~~Ai~YI~~Lq~ 57 (82)
T 1am9_A 4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVGT-------EAKLNKSAVLRKAIDYIRFLQH 57 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS-------SCCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHhccCC-------CCCCCHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999963 4799999999999999998765
No 8
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.05 E-value=7e-11 Score=114.56 Aligned_cols=55 Identities=24% Similarity=0.406 Sum_probs=41.2
Q ss_pred hhhhhccCchhHHhhHHHHHHhHHHHHHHhhhhhccccccccchhhhHHHHHHHHHHHhhhc
Q psy13711 268 PALKRANKPLMEKRRRARINQSLALLKALILDSAKTENTKHSKLEKADILELTVRHLQRQKI 329 (580)
Q Consensus 268 ~~~RK~~KPLmEKRRRARIN~SLdELKsLLpda~k~d~~~~SKLEKADILEMTVkHLQrlQa 329 (580)
...+|..|.++|||||+|||..|.+|+.|||. ..+||+||.||++||.|||.++.
T Consensus 9 ~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~-------~~~~~dk~~il~~~~~~~~~~~~ 63 (361)
T 4f3l_A 9 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPG-------NARKMDKSTVLQKSIDFLRKHKE 63 (361)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTCCS-------SSCCCCHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHhCCC-------CCCCcCHHHHHHHHHHHHHHHHh
Confidence 45678889999999999999999999999992 25799999999999999998764
No 9
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.02 E-value=1e-10 Score=115.07 Aligned_cols=60 Identities=25% Similarity=0.355 Sum_probs=51.4
Q ss_pred CchhhhhccCchhHHhhHHHHHHhHHHHHHHhhhhhccccccccchhhhHHHHHHHHHHHhhhc
Q psy13711 266 IPPALKRANKPLMEKRRRARINQSLALLKALILDSAKTENTKHSKLEKADILELTVRHLQRQKI 329 (580)
Q Consensus 266 ~~~~~RK~~KPLmEKRRRARIN~SLdELKsLLpda~k~d~~~~SKLEKADILEMTVkHLQrlQa 329 (580)
.+.+.+|.+|.++|||||+|||..|.+|+.|||.+. ...+||+|+.||++||.|||.++.
T Consensus 8 ~~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~----~~~~k~dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 8 GRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCN----AMSRKLDKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH----HCSSCCCHHHHHHHHHHHHHHHHC
T ss_pred chhhhhcccccchhhcchHHHHHHHHHHHHhcCCCC----ccccccCHHHHHHHHHHHHHHhhc
Confidence 445678889999999999999999999999999763 346899999999999999998764
No 10
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=98.92 E-value=5.1e-10 Score=91.26 Aligned_cols=53 Identities=26% Similarity=0.374 Sum_probs=47.9
Q ss_pred hhccCchhHHhhHHHHHHhHHHHHHHhhhhhccccccccchhhhHHHHHHHHHHHhhhc
Q psy13711 271 KRANKPLMEKRRRARINQSLALLKALILDSAKTENTKHSKLEKADILELTVRHLQRQKI 329 (580)
Q Consensus 271 RK~~KPLmEKRRRARIN~SLdELKsLLpda~k~d~~~~SKLEKADILEMTVkHLQrlQa 329 (580)
||..|..+||+||++||.++++|+.+||... ..|+.|++||.+||+|++.++.
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~------~~k~sK~~iL~~Ai~YI~~L~~ 54 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQ------GEKASRAQILDKATEYIQYMRR 54 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGT------TSCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCC------CCCCCHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999753 4699999999999999998764
No 11
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=98.90 E-value=8.8e-10 Score=89.67 Aligned_cols=55 Identities=27% Similarity=0.350 Sum_probs=49.5
Q ss_pred hhhhccCchhHHhhHHHHHHhHHHHHHHhhhhhccccccccchhhhHHHHHHHHHHHhhhc
Q psy13711 269 ALKRANKPLMEKRRRARINQSLALLKALILDSAKTENTKHSKLEKADILELTVRHLQRQKI 329 (580)
Q Consensus 269 ~~RK~~KPLmEKRRRARIN~SLdELKsLLpda~k~d~~~~SKLEKADILEMTVkHLQrlQa 329 (580)
..+|..|.++||+||..||.++++|+.|||... ..|+.|++||.+||.||+.++.
T Consensus 10 ~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~------~~k~sK~~iL~~Ai~YI~~L~~ 64 (80)
T 1hlo_A 10 ADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQ------GEKASRAQILDKATEYIQYMRR 64 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGT------TSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCC------CCCccHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999999753 3699999999999999998764
No 12
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1
Probab=98.86 E-value=1.4e-10 Score=93.39 Aligned_cols=46 Identities=35% Similarity=0.616 Sum_probs=40.4
Q ss_pred eecccc-cCCCCChhhhhhhccCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHhhhcCCCCccChH--HHHH
Q psy13711 42 IVSDWS-KGFPLCPPQVSRFLETPELHLGLSSTTSSTPTPSGTGNKALPLPSKPTPSSLALASLMSGEPVIDSG--VRQR 118 (580)
Q Consensus 42 ~~~~~~-~gf~~c~~~v~rfl~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~r 118 (580)
+..+|+ +||.+|+.||+|||.+.| +||+. +|+|
T Consensus 15 ~~~~yrs~Gf~eC~~EV~rfLs~~e--------------------------------------------g~d~~d~~r~r 50 (64)
T 2db7_A 15 LAMDYRSLGFRECLAEVARYLSIIE--------------------------------------------GLDASDPLRVR 50 (64)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHTS--------------------------------------------CCCTTCHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCC--------------------------------------------CCCcchHHHHH
Confidence 367999 499999999999999877 67876 9999
Q ss_pred HHHHHHhhhhccc
Q psy13711 119 LFRHLENCMSEID 131 (580)
Q Consensus 119 l~~hl~~c~~~i~ 131 (580)
|+.||.+|+.+++
T Consensus 51 Ll~HL~~~~~~~e 63 (64)
T 2db7_A 51 LVSHLNNYASQRE 63 (64)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHhhccC
Confidence 9999999998875
No 13
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=98.56 E-value=3.2e-08 Score=82.69 Aligned_cols=55 Identities=22% Similarity=0.324 Sum_probs=48.9
Q ss_pred hhhccCchhHHhhHHHHHHhHHHHHHHhhhhhccccccccchhhhHHHHHHHHHHHhhhc
Q psy13711 270 LKRANKPLMEKRRRARINQSLALLKALILDSAKTENTKHSKLEKADILELTVRHLQRQKI 329 (580)
Q Consensus 270 ~RK~~KPLmEKRRRARIN~SLdELKsLLpda~k~d~~~~SKLEKADILEMTVkHLQrlQa 329 (580)
.+|..|.++||+||+.||.++..|+.+||... ...|+.|+.||..|++|++.++.
T Consensus 5 ~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~-----~~~K~sK~~iL~~A~~YI~~L~~ 59 (88)
T 1nkp_A 5 VKRRTHNVLERQRRNELKRSFFALRDQIPELE-----NNEKAPKVVILKKATAYILSVQA 59 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGT-----TCTTCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCCCCHHHHHHHHHHHHHHHHH
Confidence 47888999999999999999999999999652 24699999999999999998765
No 14
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=98.50 E-value=1.4e-07 Score=77.51 Aligned_cols=56 Identities=25% Similarity=0.256 Sum_probs=43.0
Q ss_pred hhhccCchhHHhhHHHHHHhHHHHHHHhhhhhccccccccchhhhHHHHHHHHHHHhhhc
Q psy13711 270 LKRANKPLMEKRRRARINQSLALLKALILDSAKTENTKHSKLEKADILELTVRHLQRQKI 329 (580)
Q Consensus 270 ~RK~~KPLmEKRRRARIN~SLdELKsLLpda~k~d~~~~SKLEKADILEMTVkHLQrlQa 329 (580)
.||..+..+||+||..||.++++|+.+||.+.. ...++-|.+||..+|+|++.++.
T Consensus 4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~----~~K~~sK~~IL~~AieYI~~Lq~ 59 (76)
T 3u5v_A 4 DKRAHHNALERKRRRDINEAFRELGRMCQMHLK----SDKAQTKLLILQQAVQVILGLEQ 59 (76)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCC----ccccccHHHHHHHHHHHHHHHHH
Confidence 478889999999999999999999999996542 12233799999999999988764
No 15
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=98.29 E-value=2.8e-07 Score=76.05 Aligned_cols=53 Identities=28% Similarity=0.344 Sum_probs=45.8
Q ss_pred hccCchhHHhhHHHHHHhHHHHHHHhhhhhccccccccchhhhHHHHHHHHHHHhhhc
Q psy13711 272 RANKPLMEKRRRARINQSLALLKALILDSAKTENTKHSKLEKADILELTVRHLQRQKI 329 (580)
Q Consensus 272 K~~KPLmEKRRRARIN~SLdELKsLLpda~k~d~~~~SKLEKADILEMTVkHLQrlQa 329 (580)
|..|..+||+||+.||.|+..|+.+||... ...|+-|++||..+++|++.++.
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~-----~~~k~sk~~iL~kA~~yI~~L~~ 54 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGP-----DSSRHTTLSLLTKAKLHIKKLED 54 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCS-----SSCCCTTHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCC-----CCCCCCHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999642 35688899999999999988764
No 16
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=97.98 E-value=3e-06 Score=68.54 Aligned_cols=55 Identities=24% Similarity=0.389 Sum_probs=47.6
Q ss_pred hhhhccCchhHHhhHHHHHHhHHHHHHHhhhhhccccccccchhhhHHHHHHHHHHHhhhc
Q psy13711 269 ALKRANKPLMEKRRRARINQSLALLKALILDSAKTENTKHSKLEKADILELTVRHLQRQKI 329 (580)
Q Consensus 269 ~~RK~~KPLmEKRRRARIN~SLdELKsLLpda~k~d~~~~SKLEKADILEMTVkHLQrlQa 329 (580)
..+|..+...|++|+..||.+++.|+.+||.. ...||-|.+||.++++|++.++.
T Consensus 10 ~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~------~~~KlSKi~tLr~Ai~YI~~L~~ 64 (68)
T 1mdy_A 10 ADRRKAATMRERRRLSKVNEAFETLKRSTSSN------PNQRLPKVEILRNAIRYIEGLQA 64 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSC------TTSCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCC------CCCCCCHHHHHHHHHHHHHHHHH
Confidence 44677788999999999999999999999853 14699999999999999988764
No 17
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=97.93 E-value=5.1e-06 Score=65.60 Aligned_cols=54 Identities=22% Similarity=0.248 Sum_probs=45.8
Q ss_pred hhccCchhHHhhHHHHHHhHHHHHHHhhhhhccccccccchhhhHHHHHHHHHHHhhhc
Q psy13711 271 KRANKPLMEKRRRARINQSLALLKALILDSAKTENTKHSKLEKADILELTVRHLQRQKI 329 (580)
Q Consensus 271 RK~~KPLmEKRRRARIN~SLdELKsLLpda~k~d~~~~SKLEKADILEMTVkHLQrlQa 329 (580)
||..+..-|++|+.-||.+++.|+.+||... ...||-|.+||.+++.|++.++.
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~-----~~~klSKi~tLr~Ai~YI~~L~~ 55 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCYS-----KTQKLSKIETLRLAKNYIWALSE 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCC-----SSSCCCHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCCC-----CcCcCCHHHHHHHHHHHHHHHHH
Confidence 4445668899999999999999999998642 35699999999999999988764
No 18
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=97.83 E-value=5.7e-06 Score=67.87 Aligned_cols=48 Identities=13% Similarity=0.207 Sum_probs=40.9
Q ss_pred hhHHhhHHHHHHhHHHHHHHhhhhhccccccccchhhhHHHHHHHHHHHhhhc
Q psy13711 277 LMEKRRRARINQSLALLKALILDSAKTENTKHSKLEKADILELTVRHLQRQKI 329 (580)
Q Consensus 277 LmEKRRRARIN~SLdELKsLLpda~k~d~~~~SKLEKADILEMTVkHLQrlQa 329 (580)
--||+|+..||.++++||.+||... ...||-|.|||+++++|++.+|.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p-----~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVP-----RGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCC-----TTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC-----CCCCccHHHHHHHHHHHHHHHHc
Confidence 3477888999999999999999642 35799999999999999998764
No 19
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=97.15 E-value=0.00028 Score=59.75 Aligned_cols=43 Identities=26% Similarity=0.329 Sum_probs=37.8
Q ss_pred HHHHHHhHHHHHHHhhhhhccccccccchhhhHHHHHHHHHHHhhhc
Q psy13711 283 RARINQSLALLKALILDSAKTENTKHSKLEKADILELTVRHLQRQKI 329 (580)
Q Consensus 283 RARIN~SLdELKsLLpda~k~d~~~~SKLEKADILEMTVkHLQrlQa 329 (580)
|.-||..+.||..|||.+. ....|+.|+.||..+|+|++.+|.
T Consensus 4 R~nIN~~I~EL~~LiP~~~----~~~~k~nKg~IL~ksvdYI~~Lq~ 46 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSN----DPDMRWNKGTILKASVDYIRKLQR 46 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCC----CTTCCCSHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCC----CcccCcchHHHHHHHHHHHHHHHH
Confidence 7889999999999999763 246799999999999999988765
No 20
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=96.58 E-value=0.0018 Score=56.21 Aligned_cols=62 Identities=16% Similarity=0.170 Sum_probs=40.3
Q ss_pred hhHHhhH-HHHHHhHHHHHHHhhhhhccccccccchhhhHHHHHHHHHHHhhhcc-c--hhhhhHHHHHHH
Q psy13711 277 LMEKRRR-ARINQSLALLKALILDSAKTENTKHSKLEKADILELTVRHLQRQKIL-S--SDIRSKYKAGYE 343 (580)
Q Consensus 277 LmEKRRR-ARIN~SLdELKsLLpda~k~d~~~~SKLEKADILEMTVkHLQrlQal-a--s~~~drFraGFr 343 (580)
.-|.|+| .-||++++.||.+||... ...||-|.|||.+++.|++.++.+ . ......|..||.
T Consensus 30 ~~~~r~Rm~~lN~AF~~LR~~vP~~p-----~~kKLSKIETLRlAi~YI~~Lq~~L~~~~~~~~~~~~g~~ 95 (97)
T 4aya_A 30 VDDPMSLLYNMNDCYSKLKELVPSIP-----QNKKVSKMEILQHVIDYILDLQIALDSHLKPSFLVQSGDI 95 (97)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHCTTSC-----SSSCCCHHHHHHHHHHHHHHHHHHHHTTTSTTCC------
T ss_pred cccHHHHHHHHHHHHHHHHHHCCCCC-----CCCcccHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcCcc
Confidence 3443434 559999999999999642 357999999999999999987752 2 223344677775
No 21
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=20.30 E-value=2.7e+02 Score=23.49 Aligned_cols=65 Identities=18% Similarity=0.229 Sum_probs=41.8
Q ss_pred hHHHHHHhHHHHHHHhhhhhccccccccch--hhhHHHHHHHHHHHhhhcc-------chhhhhHHHHHHHHHHHHHhhc
Q psy13711 282 RRARINQSLALLKALILDSAKTENTKHSKL--EKADILELTVRHLQRQKIL-------SSDIRSKYKAGYEECSREVSRF 352 (580)
Q Consensus 282 RRARIN~SLdELKsLLpda~k~d~~~~SKL--EKADILEMTVkHLQrlQal-------as~~~drFraGFrECa~EVsRF 352 (580)
=++||.+.+.-|+.-|..... .+| .-.+|+||+-.|++.-+.. ..-..=.|..|+-++ -.+..|
T Consensus 5 l~Eki~kYi~~leeaL~~i~~------~~l~~~a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa~GwLDA-lR~~~~ 77 (87)
T 2pmr_A 5 CRERIEKDLELLEKNLMEMKS------IKLSDDEEAVVERALNYRDDSVYYLEKGDHITSFGCITYAHGLLDS-LRMLHR 77 (87)
T ss_dssp CHHHHHHHHHHHHHHHHHHTT------SCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHccc------ccchHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-HHHhcc
Confidence 368899999888887754321 112 3358999999999875421 112334577888888 444444
Q ss_pred c
Q psy13711 353 L 353 (580)
Q Consensus 353 L 353 (580)
+
T Consensus 78 ~ 78 (87)
T 2pmr_A 78 I 78 (87)
T ss_dssp S
T ss_pred c
Confidence 4
Done!