RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13711
(580 letters)
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 57.1 bits (138), Expect = 2e-11
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 271 KRANKPLMEKRRRARINQSLALLKALILDSAKTENTKHSKLEKADILELTV---RHLQRQ 327
+RA +E+RRR +IN + L +I DS + + S K IL + L++
Sbjct: 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDS--SMESTKSGQSKGGILSKASDYIQELRQS 62
Query: 328 K 328
Sbjct: 63 N 63
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 63
Score = 54.5 bits (131), Expect = 2e-10
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 270 LKRANKPLMEKRRRARINQSLALLKALILDSAKTENTKHSKLEKADILELTV---RHLQR 326
+KR + E+ RR R+ +L L +LI K +N + KA +E RHLQ+
Sbjct: 1 MKRESHKHAEQARRNRLAVALHELASLIPAEWKQQN-VSAAPSKATTVEAACRYIRHLQQ 59
Query: 327 Q 327
Sbjct: 60 N 60
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 83
Score = 51.0 bits (122), Expect = 6e-09
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 271 KRANKPLMEKRRRARINQSLALLKALILDSAKTENTKHSKLEKADILELTVRHLQ 325
KRA+ +E++RR I S L+ + + K +A IL+ ++Q
Sbjct: 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSL------QGEKASRAQILDKATEYIQ 50
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 46.9 bits (111), Expect = 2e-07
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 271 KRANKPLMEKRRRARINQSLALLKALILDSAKTENTKHSKLEKADILELTVRHLQRQK 328
KR +EKR R+ IN + LK L++ + +KL K+ +L + +++ +
Sbjct: 6 KRTAHNAIEKRYRSSINDKIIELKDLVVGT-------EAKLNKSAVLRKAIDYIRFLQ 56
>d2db7a1 a.273.1.1 (A:3-57) Hairy/enhancer-of-split related with
YRPW motif protein 1; HESR-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 55
Score = 44.8 bits (106), Expect = 4e-07
Identities = 16/87 (18%), Positives = 23/87 (26%), Gaps = 43/87 (49%)
Query: 336 SKYKA-GYEECSREVSRFLETPELHLGLSSTTSSTPTPSGTGNKALPLPSKPTPSSLALA 394
Y++ G+ EC EV+R+L E
Sbjct: 10 MDYRSLGFRECLAEVARYLSIIE------------------------------------- 32
Query: 395 SLMSGEPVIDSGVRQRLFRHLENCMSE 421
+R RL HL N S+
Sbjct: 33 -----GLDASDPLRVRLVSHLNNYASQ 54
Score = 34.4 bits (79), Expect = 0.002
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 104 LMSGEPV-IDSGVRQRLFRHLENCMSE 129
L E + +R RL HL N S+
Sbjct: 28 LSIIEGLDASDPLRVRLVSHLNNYASQ 54
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 44.1 bits (104), Expect = 2e-06
Identities = 14/84 (16%), Positives = 32/84 (38%), Gaps = 8/84 (9%)
Query: 271 KRANKPLMEKRRRARINQSLALLKALILDSAKTENTKHSKLEKADILELTV---RHLQRQ 327
KR ++E++RR + +S L+ I + + K K IL+ +Q +
Sbjct: 6 KRRTHNVLERQRRNELKRSFFALRDQIPELE-----NNEKAPKVVILKKATAYILSVQAE 60
Query: 328 KILSSDIRSKYKAGYEECSREVSR 351
+ + E+ ++ +
Sbjct: 61 EQKLISEEDLLRKRREQLKHKLEQ 84
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 41.8 bits (98), Expect = 9e-06
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 272 RANKPLMEKRRRARINQSLALLKALILDSAKTENTKHSKLEKADILELTVRHLQRQK 328
R+ MEK RRA + SL LK L+ S+ +L H+++ +
Sbjct: 2 RSTHNEMEKNRRAHLRLSLEKLKGLV-----PLGPDSSRHTTLSLLTKAKLHIKKLE 53
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 68
Score = 40.2 bits (94), Expect = 2e-05
Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
Query: 271 KRANKPLMEKRRRARINQSLALLKALILDSAKTENTKHSKLEKADILELTV---RHLQRQ 327
+R + E+RR +++N++ LK + + +L K +IL + LQ
Sbjct: 12 RRKAATMRERRRLSKVNEAFETLKRSTSSN------PNQRLPKVEILRNAIRYIEGLQAL 65
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 61
Score = 28.9 bits (65), Expect = 0.19
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 11/58 (18%)
Query: 283 RARINQSLALLKALILDSAKTENTKHSKLEKADILELT---VRHLQRQ-KILSSDIRS 336
R+ IN + LK L++ + K+ K+ +L +++LQ+ L +
Sbjct: 1 RSSINDKIIELKDLVMGTDA-------KMHKSGVLRKAIDYIKYLQQVNHKLRQENMV 51
>d1dt9a3 d.91.1.1 (A:5-142) N-terminal domain of eukaryotic peptide
chain release factor subunit 1, ERF1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 138
Score = 29.7 bits (67), Expect = 0.39
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 497 TASDI-SDSNSNQSSSAVESAMSVLQLIPSRLPDGQVVF 534
TAS+I S N A+ S L+L P+G VV+
Sbjct: 54 TASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVY 92
>d1oyia_ a.4.5.19 (A:) dsRNA-binding protein E3 (E3L) {Vaccinia
virus [TaxId: 10245]}
Length = 62
Score = 25.1 bits (54), Expect = 5.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 244 KRSLNKTLVVMSSPPLVASSNSIPP 268
KR +NK L + +V SS+ IPP
Sbjct: 32 KREVNKALYDLQRSAMVYSSDDIPP 56
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.127 0.361
Gapped
Lambda K H
0.267 0.0647 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,976,294
Number of extensions: 87600
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 13
Length of query: 580
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 490
Effective length of database: 1,171,896
Effective search space: 574229040
Effective search space used: 574229040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.1 bits)