BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13712
         (63 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8BTY2|S4A7_MOUSE Sodium bicarbonate cotransporter 3 OS=Mus musculus GN=Slc4a7 PE=1
            SV=2
          Length = 1034

 Score = 31.2 bits (69), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 9/54 (16%)

Query: 18   LQIPLANGNIMKIPVTS---------INISEEVNKTGIWKQVNKGDKKVPPSKP 62
            + +P   G++++IPV +         +NIS+E+ KT  WK ++   +    ++P
Sbjct: 952  VHLPFERGSLLQIPVKTLKYSIDPSVVNISDEMAKTAQWKALSMNTENAKVTRP 1005


>sp|B6F1W5|KTU_ORYLA Protein kintoun OS=Oryzias latipes GN=dnaaf2 PE=2 SV=1
          Length = 588

 Score = 30.0 bits (66), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 7/55 (12%)

Query: 16  GNLQIPLANGNIMKIPVTS------INISEEVNKTG-IWKQVNKGDKKVPPSKPR 63
           G+++IP ++   +K+PVTS      +N S+E +K     +Q+   D+ V P++ R
Sbjct: 488 GSVEIPTSSQEYLKVPVTSAATAANVNASDETSKRKPTEEQLEDADEDVLPAEQR 542


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.308    0.130    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,980,541
Number of Sequences: 539616
Number of extensions: 793918
Number of successful extensions: 1298
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1297
Number of HSP's gapped (non-prelim): 3
length of query: 63
length of database: 191,569,459
effective HSP length: 35
effective length of query: 28
effective length of database: 172,682,899
effective search space: 4835121172
effective search space used: 4835121172
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)