Query psy13712
Match_columns 63
No_of_seqs 37 out of 39
Neff 3.3
Searched_HMMs 46136
Date Fri Aug 16 18:33:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13712.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13712hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1654 BirA Biotin operon rep 47.8 2.9 6.3E-05 26.0 -1.4 12 40-51 30-41 (79)
2 PF09776 Mitoc_L55: Mitochondr 44.7 12 0.00026 25.2 1.0 28 13-40 52-80 (116)
3 PF07668 MpPF1: M penetrans pa 33.5 22 0.00048 27.4 1.1 33 6-38 135-175 (315)
4 COG3861 Uncharacterized protei 30.1 30 0.00065 25.3 1.3 20 19-38 125-146 (195)
5 PF10512 Borealin: Cell divisi 28.8 32 0.00069 22.7 1.1 17 14-30 64-80 (116)
6 PF06007 PhnJ: Phosphonate met 27.4 54 0.0012 25.1 2.2 42 3-45 33-87 (277)
7 PF07026 DUF1317: Protein of u 23.3 32 0.00069 21.0 0.3 28 16-43 11-47 (60)
8 cd06472 ACD_ScHsp26_like Alpha 22.7 61 0.0013 19.1 1.5 23 9-32 17-39 (92)
9 KOG3908|consensus 21.8 18 0.00039 28.8 -1.3 22 42-63 228-249 (396)
10 PF15493 YrpD: Domain of unkno 20.5 1.3E+02 0.0028 22.3 3.0 44 9-52 93-160 (208)
No 1
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=47.77 E-value=2.9 Score=25.96 Aligned_cols=12 Identities=25% Similarity=0.955 Sum_probs=10.2
Q ss_pred hccccccceeec
Q psy13712 40 EVNKTGIWKQVN 51 (63)
Q Consensus 40 EM~KT~iWK~l~ 51 (63)
.|+.|+|||+|.
T Consensus 30 giSRtaVwK~Iq 41 (79)
T COG1654 30 GISRTAVWKHIQ 41 (79)
T ss_pred CccHHHHHHHHH
Confidence 578999999975
No 2
>PF09776 Mitoc_L55: Mitochondrial ribosomal protein L55; InterPro: IPR018615 Members of this family are involved in mitochondrial biogenesis and G2/M phase cell cycle progression. They form a component of the mitochondrial ribosome large subunit (39S) which comprises a 16S rRNA and about 50 distinct proteins.
Probab=44.72 E-value=12 Score=25.16 Aligned_cols=28 Identities=29% Similarity=0.470 Sum_probs=21.3
Q ss_pred CCCCeeeeecCC-CCeeeecccccccchh
Q psy13712 13 PSYGNLQIPLAN-GNIMKIPVTSINISEE 40 (63)
Q Consensus 13 ~~e~~vqiPle~-g~vl~IPl~~INISDE 40 (63)
+.+.+++|.+.+ ..+|++||.--.+|+|
T Consensus 52 pDGSTI~Iry~EPR~ii~mPlDl~~LSee 80 (116)
T PF09776_consen 52 PDGSTINIRYHEPRRIIKMPLDLDTLSEE 80 (116)
T ss_pred cCCCEEEEeccChHHHhccccCcccCCHH
Confidence 567889999966 8889999955555544
No 3
>PF07668 MpPF1: M penetrans paralogue family 1; InterPro: IPR011653 This group of paralogous proteins identified in Mycoplasma penetrans includes homologues of lipoprotein p35 [].; GO: 0016020 membrane
Probab=33.48 E-value=22 Score=27.38 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=24.1
Q ss_pred CCCCCCCCCCCeeeeecCCC--------Ceeeecccccccc
Q psy13712 6 SSSNPGFPSYGNLQIPLANG--------NIMKIPVTSINIS 38 (63)
Q Consensus 6 ~~~~~~~~~e~~vqiPle~g--------~vl~IPl~~INIS 38 (63)
-..++||-.+.-||+-...- .-||||++.||+.
T Consensus 135 v~N~lG~t~~DLLHVNV~~t~~~~~~~n~DLqIPvSdiNL~ 175 (315)
T PF07668_consen 135 VKNKLGLTNGDLLHVNVTATKSSSSTTNYDLQIPVSDINLK 175 (315)
T ss_pred EecccCccCCCEEEEEEEEecCCCCceeeeEeeecccceee
Confidence 34678998777788876432 2489999888877
No 4
>COG3861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.12 E-value=30 Score=25.29 Aligned_cols=20 Identities=35% Similarity=0.843 Sum_probs=16.4
Q ss_pred eeecCCCCeeeecc--cccccc
Q psy13712 19 QIPLANGNIMKIPV--TSINIS 38 (63)
Q Consensus 19 qiPle~g~vl~IPl--~~INIS 38 (63)
-.|++.|-++.||| +.+||+
T Consensus 125 ~~~~~~~e~~rIpl~EE~~~v~ 146 (195)
T COG3861 125 GAPLEAGEVIRIPLSEERVNVS 146 (195)
T ss_pred CCcccCCcEEEeeccccccccc
Confidence 46888999999999 667776
No 5
>PF10512 Borealin: Cell division cycle-associated protein 8 ; InterPro: IPR018867 The chromosomal passenger complex of Aurora B kinase, INCENP, and Survivin has essential regulatory roles at centromeres and the central spindle in mitosis. Cell division cycle-associated protein 8, also known as Borealin, is also a member of the complex. Approximately half of Aurora B in mitotic cells is complexed with INCENP, Borealin, and Survivin. Depletion of Borealin by RNA interference delays mitotic progression and results in kinetochore-spindle mis-attachments and an increase in bipolar spindles associated with ectopic asters []. ; PDB: 2KDD_A.
Probab=28.78 E-value=32 Score=22.65 Aligned_cols=17 Identities=35% Similarity=0.724 Sum_probs=7.6
Q ss_pred CCCeeeeecCCCCeeee
Q psy13712 14 SYGNLQIPLANGNIMKI 30 (63)
Q Consensus 14 ~e~~vqiPle~g~vl~I 30 (63)
....|+||+.+|..+++
T Consensus 64 ~~~~vnIPl~~G~~~~l 80 (116)
T PF10512_consen 64 EDANVNIPLGNGKPIRL 80 (116)
T ss_dssp -S-EE---SSSSS---E
T ss_pred CCccEEEecCCCeEEEc
Confidence 45679999999987776
No 6
>PF06007 PhnJ: Phosphonate metabolism protein PhnJ; InterPro: IPR010306 This family consists of several bacterial phosphonate metabolism (PhnJ) sequences. The exact role that PhnJ plays in phosphonate utilisation is unknown.; GO: 0042916 alkylphosphonate transport
Probab=27.39 E-value=54 Score=25.14 Aligned_cols=42 Identities=31% Similarity=0.606 Sum_probs=27.0
Q ss_pred CCCCCCCC---CCCCCCeeeeecC---CCCeeeec-------ccccccchhccccc
Q psy13712 3 PFSSSSNP---GFPSYGNLQIPLA---NGNIMKIP-------VTSINISEEVNKTG 45 (63)
Q Consensus 3 ~~~~~~~~---~~~~e~~vqiPle---~g~vl~IP-------l~~INISDEM~KT~ 45 (63)
||.|---| |+||+| ||+-++ ..++||+= +..|||+.=..+|+
T Consensus 33 PFaSREMP~~~GWGTGG-lQvT~sliG~~D~lKVIDQGaDds~NAvniR~f~~~t~ 87 (277)
T PF06007_consen 33 PFASREMPMPRGWGTGG-LQVTLSLIGPDDVLKVIDQGADDSTNAVNIRRFFARTA 87 (277)
T ss_pred CcccccCccccccccCc-eeEEEEeecCCceeEEeecCCCcchhHHHHHHHHHHhc
Confidence 77776655 888988 777763 26666652 15567775555554
No 7
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=23.33 E-value=32 Score=21.03 Aligned_cols=28 Identities=25% Similarity=0.680 Sum_probs=21.2
Q ss_pred Ceeeeec---------CCCCeeeecccccccchhccc
Q psy13712 16 GNLQIPL---------ANGNIMKIPVTSINISEEVNK 43 (63)
Q Consensus 16 ~~vqiPl---------e~g~vl~IPl~~INISDEM~K 43 (63)
|.+++|+ -+|.+++-|+...++-+|++-
T Consensus 11 G~itl~ys~~~~GWl~Pgg~vi~NPlkAqR~AE~~n~ 47 (60)
T PF07026_consen 11 GTITLPYSHFKNGWLMPGGKVITNPLKAQRLAEELNS 47 (60)
T ss_pred eEEEEEEEeccceeecCCCeeEcCHHHHHHHHHHHHh
Confidence 4567774 468889999988888888763
No 8
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=22.67 E-value=61 Score=19.13 Aligned_cols=23 Identities=17% Similarity=0.546 Sum_probs=15.9
Q ss_pred CCCCCCCCeeeeecCCCCeeeecc
Q psy13712 9 NPGFPSYGNLQIPLANGNIMKIPV 32 (63)
Q Consensus 9 ~~~~~~e~~vqiPle~g~vl~IPl 32 (63)
-||+..+ .++|-++++++|.|--
T Consensus 17 lPGv~~e-di~i~v~~~~~L~I~g 39 (92)
T cd06472 17 VPGVKKE-DVKVEVEDGRVLRISG 39 (92)
T ss_pred CCCCChH-hEEEEEeCCCEEEEEE
Confidence 4888766 4777777766766644
No 9
>KOG3908|consensus
Probab=21.78 E-value=18 Score=28.78 Aligned_cols=22 Identities=36% Similarity=0.798 Sum_probs=19.2
Q ss_pred cccccceeeccCCCCCCCCCCC
Q psy13712 42 NKTGIWKQVNKGDKKVPPSKPR 63 (63)
Q Consensus 42 ~KT~iWK~l~~nt~~~~~~~~~ 63 (63)
+|...|.-|.-.++.+|+.|||
T Consensus 228 eK~~Fwr~V~~ct~~LP~dkPR 249 (396)
T KOG3908|consen 228 EKSEFWRMVAFCTSSLPPDKPR 249 (396)
T ss_pred hHHHHHHHHHHHHccCCCCCCc
Confidence 3566799999999999999998
No 10
>PF15493 YrpD: Domain of unknown function, YrpD
Probab=20.48 E-value=1.3e+02 Score=22.28 Aligned_cols=44 Identities=32% Similarity=0.496 Sum_probs=27.8
Q ss_pred CCCCCCCCeeeeec---CCCCe-eeeccc---------------ccccchhcccccc-----ceeecc
Q psy13712 9 NPGFPSYGNLQIPL---ANGNI-MKIPVT---------------SINISEEVNKTGI-----WKQVNK 52 (63)
Q Consensus 9 ~~~~~~e~~vqiPl---e~g~v-l~IPl~---------------~INISDEM~KT~i-----WK~l~~ 52 (63)
.+||-++..||+-+ -+|++ |++--- ..-|=.|..++.+ ||.|+-
T Consensus 93 ~ngf~pGqdVqm~~y~n~nGn~Rltl~Gta~c~d~~ct~~~dty~~~ii~e~~~~ni~sv~~wK~LaT 160 (208)
T PF15493_consen 93 KNGFKPGQDVQMTLYKNYNGNTRLTLWGTAICADRSCTNNGDTYTGRIISEISNTNIGSVSKWKLLAT 160 (208)
T ss_pred cCCCCCCCeEEEEEEEeCCCCEEEEEEeeeeccccccccCCCceEEEEEEeeccCCccceeeeeeeeE
Confidence 58999999999877 34665 333220 0111157777777 999874
Done!