Query psy13712
Match_columns 63
No_of_seqs 37 out of 39
Neff 3.3
Searched_HMMs 29240
Date Fri Aug 16 18:33:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13712.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13712hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4emc_C Monopolin complex subun 26.1 18 0.00063 21.7 0.5 10 2-11 40-49 (70)
2 2x8n_A CV0863; non-uniform sam 18.7 76 0.0026 19.6 2.3 19 14-32 35-53 (111)
3 3k8r_A Uncharacterized protein 14.0 1.1E+02 0.0038 19.3 2.2 18 15-32 36-53 (124)
4 1ct5_A Protein (yeast hypothet 13.4 53 0.0018 22.2 0.6 13 34-46 141-153 (256)
5 3ikw_A Heparin lyase I; polysa 12.6 78 0.0027 24.1 1.3 33 11-48 150-182 (374)
6 3sy1_A UPF0001 protein YGGS; e 11.6 68 0.0023 21.6 0.7 14 34-47 129-142 (245)
7 3a5t_A Transcription factor MA 10.9 15 0.00052 23.2 -2.6 21 17-37 3-23 (107)
8 2b4h_A Outer capsid protein VP 9.6 79 0.0027 22.9 0.5 21 33-53 23-43 (254)
9 3es4_A Uncharacterized protein 9.3 68 0.0023 19.9 0.0 8 35-42 7-14 (116)
10 3iyu_X Outer capsid protein VP 9.3 87 0.003 26.0 0.6 20 34-53 249-268 (776)
No 1
>4emc_C Monopolin complex subunit MAM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae}
Probab=26.09 E-value=18 Score=21.65 Aligned_cols=10 Identities=70% Similarity=0.939 Sum_probs=3.5
Q ss_pred CCCCCCCCCC
Q psy13712 2 NPFSSSSNPG 11 (63)
Q Consensus 2 ~~~~~~~~~~ 11 (63)
|||+||.|--
T Consensus 40 npf~ssp~tk 49 (70)
T 4emc_C 40 NPFSSSPNTK 49 (70)
T ss_dssp STTC------
T ss_pred CCCCCCCCcc
Confidence 7898887653
No 2
>2x8n_A CV0863; non-uniform sampling, multidimensional decomposition, abacus, fragment monte carlo, structural genomics; NMR {Chromobacterium violaceum atcc 12472}
Probab=18.70 E-value=76 Score=19.60 Aligned_cols=19 Identities=26% Similarity=0.244 Sum_probs=17.1
Q ss_pred CCCeeeeecCCCCeeeecc
Q psy13712 14 SYGNLQIPLANGNIMKIPV 32 (63)
Q Consensus 14 ~e~~vqiPle~g~vl~IPl 32 (63)
+++.+.|-|++|..+.+|+
T Consensus 35 ~~~~l~v~L~dGr~l~~Pl 53 (111)
T 2x8n_A 35 EEGVIVFILANDRELKFRP 53 (111)
T ss_dssp TTTEEEEEETTCCEEEECT
T ss_pred cCCEEEEEECCCCEEEeeH
Confidence 5677999999999999999
No 3
>3k8r_A Uncharacterized protein; unknown function, structural genomics, joint center for STRU genomics, JCSG; 2.75A {Rhodospirillum rubrum atcc 11170}
Probab=13.98 E-value=1.1e+02 Score=19.28 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=16.5
Q ss_pred CCeeeeecCCCCeeeecc
Q psy13712 15 YGNLQIPLANGNIMKIPV 32 (63)
Q Consensus 15 e~~vqiPle~g~vl~IPl 32 (63)
+..+.+-|.+|..+.+|+
T Consensus 36 ~~~l~v~L~dGr~l~~Pl 53 (124)
T 3k8r_A 36 SARVIVDLENGCTFAFPP 53 (124)
T ss_dssp TTEEEEEETTSCEEEECG
T ss_pred CCEEEEEECCCCEEEecH
Confidence 577999999999999999
No 4
>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A*
Probab=13.38 E-value=53 Score=22.16 Aligned_cols=13 Identities=46% Similarity=0.654 Sum_probs=11.4
Q ss_pred ccccchhcccccc
Q psy13712 34 SINISEEVNKTGI 46 (63)
Q Consensus 34 ~INISDEM~KT~i 46 (63)
.||...||+|+|+
T Consensus 141 qVdtG~e~~R~G~ 153 (256)
T 1ct5_A 141 QINTSHEDQKSGL 153 (256)
T ss_dssp EBCCSSSCCSSSB
T ss_pred EEECCCCCCCcCc
Confidence 4688999999997
No 5
>3ikw_A Heparin lyase I; polysaccharide lyase, beta-jelly roll; 1.30A {Bacteroides thetaiotaomicron} PDB: 3ilr_A* 3imn_A 3in9_A* 3ina_A*
Probab=12.55 E-value=78 Score=24.07 Aligned_cols=33 Identities=33% Similarity=0.599 Sum_probs=23.1
Q ss_pred CCCCCCeeeeecCCCCeeeecccccccchhccccccce
Q psy13712 11 GFPSYGNLQIPLANGNIMKIPVTSINISEEVNKTGIWK 48 (63)
Q Consensus 11 ~~~~e~~vqiPle~g~vl~IPl~~INISDEM~KT~iWK 48 (63)
|.|.-.-|+-| +|.|+++++++. -||.||.++|
T Consensus 150 GmPdRTLv~~P--~Gev~~ls~eef---~~l~~tmiFk 182 (374)
T 3ikw_A 150 GMPDRTLVQTP--QGEVKKLTVDEF---VELEKTTFFK 182 (374)
T ss_dssp ECCCTTEEECT--TSCEEECCHHHH---HHHHTTEEEE
T ss_pred CCCCcceeeCC--CCeEEEecHHHH---Hhhhheeeee
Confidence 34444446666 788999888555 6788888775
No 6
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A*
Probab=11.60 E-value=68 Score=21.64 Aligned_cols=14 Identities=57% Similarity=0.757 Sum_probs=12.0
Q ss_pred ccccchhccccccc
Q psy13712 34 SINISEEVNKTGIW 47 (63)
Q Consensus 34 ~INISDEM~KT~iW 47 (63)
.||+..||+|.|++
T Consensus 129 qVntG~e~~R~G~~ 142 (245)
T 3sy1_A 129 QINISDENSKSGIQ 142 (245)
T ss_dssp EBCCSCTTCCSSBC
T ss_pred EEECCCCcCCcCCC
Confidence 56888999999985
No 7
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=10.94 E-value=15 Score=23.22 Aligned_cols=21 Identities=14% Similarity=0.401 Sum_probs=16.0
Q ss_pred eeeeecCCCCeeeeccccccc
Q psy13712 17 NLQIPLANGNIMKIPVTSINI 37 (63)
Q Consensus 17 ~vqiPle~g~vl~IPl~~INI 37 (63)
+..+||.+..++.+|+..+|.
T Consensus 3 ~~~~~~sd~~Lv~m~v~elN~ 23 (107)
T 3a5t_A 3 HMGTSLTDEELVTMSVRELNQ 23 (107)
T ss_dssp CCCCCCCHHHHHHSCHHHHHH
T ss_pred CCCCCCCHHHHhcCCHHHHHH
Confidence 357788888888999966653
No 8
>2b4h_A Outer capsid protein VP4; beta sandwich, greek KEY, membrane penetration protein, non- virus, spike protein, rearrangement, viral protein; 1.60A {Rhesus rotavirus} PDB: 2b4i_A
Probab=9.63 E-value=79 Score=22.94 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=15.1
Q ss_pred cccccchhccccccceeeccC
Q psy13712 33 TSINISEEVNKTGIWKQVNKG 53 (63)
Q Consensus 33 ~~INISDEM~KT~iWK~l~~n 53 (63)
..+|-..-++||..||-+.=|
T Consensus 23 aq~NeDivISKtSLWKEmqYn 43 (254)
T 2b4h_A 23 AQANEDIVVSKTSLWKEMQYN 43 (254)
T ss_dssp --CCEEEECSCCEEEEEEEEE
T ss_pred cccccceEEechhhhhhhhhc
Confidence 556777789999999987543
No 9
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=9.33 E-value=68 Score=19.89 Aligned_cols=8 Identities=50% Similarity=0.916 Sum_probs=5.3
Q ss_pred cccchhcc
Q psy13712 35 INISEEVN 42 (63)
Q Consensus 35 INISDEM~ 42 (63)
||||+|+.
T Consensus 7 ~~~~~~~~ 14 (116)
T 3es4_A 7 FNISDDVD 14 (116)
T ss_dssp EETTCCCS
T ss_pred EccccccC
Confidence 67776655
No 10
>3iyu_X Outer capsid protein VP4; triple layered particle, NEAR atomic resolution, double layered particle, de novo, infectious, icosah virus; HET: NAG; 3.80A {Simian rotavirus A} PDB: 1kri_A
Probab=9.30 E-value=87 Score=25.97 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=14.0
Q ss_pred ccccchhccccccceeeccC
Q psy13712 34 SINISEEVNKTGIWKQVNKG 53 (63)
Q Consensus 34 ~INISDEM~KT~iWK~l~~n 53 (63)
.+|=...++||..||-+.-|
T Consensus 249 q~NEDIvISKTSLWKEmQYN 268 (776)
T 3iyu_X 249 QANEDIVVSKTSLWKEMQYN 268 (776)
T ss_dssp -CEEEEESSCCCCEEEEEEE
T ss_pred cCCccEEEecchhHHhhhhc
Confidence 34444779999999987543
Done!