Query psy13712
Match_columns 63
No_of_seqs 37 out of 39
Neff 3.3
Searched_HMMs 13730
Date Fri Aug 16 18:33:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13712.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13712hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2eyqa1 b.34.18.1 (A:466-545) 15.1 78 0.0057 17.2 3.1 36 17-60 43-78 (80)
2 d1lc0a2 d.81.1.4 (A:129-246) B 14.7 27 0.002 21.2 1.0 24 9-32 91-114 (118)
3 d1w7ja1 b.34.3.1 (A:5-62) Myos 14.7 63 0.0046 16.8 2.5 17 16-32 32-48 (58)
4 d1ppjj_ f.23.14.1 (J:) Subunit 13.4 14 0.001 18.2 -0.6 13 39-51 15-27 (33)
5 d1irua_ d.153.1.4 (A:) Proteas 13.4 31 0.0022 21.2 1.0 22 7-30 3-24 (244)
6 d1gmea_ b.15.1.1 (A:) Small he 10.7 49 0.0036 18.9 1.3 22 9-31 60-81 (150)
7 d1ug1a_ b.34.2.1 (A:) Hypothet 9.9 1.1E+02 0.0077 16.3 2.5 34 12-49 26-59 (92)
8 d1ueba3 b.40.4.5 (A:127-184) E 8.0 1.3E+02 0.0093 15.6 2.3 11 22-32 27-37 (58)
9 d1irug_ d.153.1.4 (G:) Proteas 7.5 60 0.0043 19.9 0.8 24 7-32 2-25 (245)
10 d3cx5i1 f.23.14.1 (I:4-58) Sub 7.5 31 0.0023 18.2 -0.6 12 39-50 38-49 (55)
No 1
>d2eyqa1 b.34.18.1 (A:466-545) Transcription-repair coupling factor, RRCF, middle domain {Escherichia coli [TaxId: 562]}
Probab=15.12 E-value=78 Score=17.18 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=25.4
Q ss_pred eeeeecCCCCeeeecccccccchhccccccceeeccCCCCCCCC
Q psy13712 17 NLQIPLANGNIMKIPVTSINISEEVNKTGIWKQVNKGDKKVPPS 60 (63)
Q Consensus 17 ~vqiPle~g~vl~IPl~~INISDEM~KT~iWK~l~~nt~~~~~~ 60 (63)
-+.|-++++..|-+|+..+ . -+||++....++.+-+
T Consensus 43 ~l~leY~~~d~LyVPv~~~------~--~i~kY~g~~~~~p~L~ 78 (80)
T d2eyqa1 43 YLMLTYANDAKLYVPVSSL------H--LISRYAGGAEENAPLH 78 (80)
T ss_dssp EEEEECGGGCEEEEEGGGG------G--GEEECCCSCSSSCCCC
T ss_pred eEEEEEcCCCeEEEeHHHh------c--ceeeccCCCCCCCcCC
Confidence 4788888898999999555 2 3678876666555443
No 2
>d1lc0a2 d.81.1.4 (A:129-246) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=14.68 E-value=27 Score=21.24 Aligned_cols=24 Identities=17% Similarity=0.529 Sum_probs=21.1
Q ss_pred CCCCCCCCeeeeecCCCCeeeecc
Q psy13712 9 NPGFPSYGNLQIPLANGNIMKIPV 32 (63)
Q Consensus 9 ~~~~~~e~~vqiPle~g~vl~IPl 32 (63)
-||+.-.-++++-|.+|.+-++|-
T Consensus 91 GpG~kR~k~i~F~f~~gsLe~~P~ 114 (118)
T d1lc0a2 91 GPGLKRNRYVNFQFTSGSLEEVPS 114 (118)
T ss_dssp CTTCCCEEEEEEEESSCEECCCCC
T ss_pred CCCcccccceeEEeccCceeeCCC
Confidence 589999999999999998888874
No 3
>d1w7ja1 b.34.3.1 (A:5-62) Myosin S1 fragment, N-terminal domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}
Probab=14.68 E-value=63 Score=16.78 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=14.6
Q ss_pred CeeeeecCCCCeeeecc
Q psy13712 16 GNLQIPLANGNIMKIPV 32 (63)
Q Consensus 16 ~~vqiPle~g~vl~IPl 32 (63)
..++|-+|+|..+++++
T Consensus 32 k~L~l~lEdg~~~~~~~ 48 (58)
T d1w7ja1 32 KVLQLRLEEGKDLEYCL 48 (58)
T ss_dssp SEEEEECSSSSEEEEEC
T ss_pred eEEEEEecCCCEEEEEe
Confidence 35899999999988877
No 4
>d1ppjj_ f.23.14.1 (J:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=13.39 E-value=14 Score=18.16 Aligned_cols=13 Identities=31% Similarity=0.902 Sum_probs=10.9
Q ss_pred hhccccccceeec
Q psy13712 39 EEVNKTGIWKQVN 51 (63)
Q Consensus 39 DEM~KT~iWK~l~ 51 (63)
|-++|+-.||.|-
T Consensus 15 d~~NkGklWKdIk 27 (33)
T d1ppjj_ 15 EHINEGKLWKHIK 27 (33)
T ss_dssp HHHTTTTSHHHHG
T ss_pred HHhcccchHHHHH
Confidence 6789999999874
No 5
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}
Probab=13.39 E-value=31 Score=21.20 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=16.4
Q ss_pred CCCCCCCCCCeeeeecCCCCeeee
Q psy13712 7 SSNPGFPSYGNLQIPLANGNIMKI 30 (63)
Q Consensus 7 ~~~~~~~~e~~vqiPle~g~vl~I 30 (63)
.+-.||...-++.-| +|++.|+
T Consensus 3 ~~~~gyd~~~t~Fsp--~Grl~Qv 24 (244)
T d1irua_ 3 GSSAGFDRHITIFSP--EGRLYQV 24 (244)
T ss_dssp SCCCTTTTTSSCCCT--TSCCHHH
T ss_pred CCCCCcCCCCceECC--CCeEhHH
Confidence 456788888777777 7888776
No 6
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]}
Probab=10.73 E-value=49 Score=18.85 Aligned_cols=22 Identities=18% Similarity=0.536 Sum_probs=15.6
Q ss_pred CCCCCCCCeeeeecCCCCeeeec
Q psy13712 9 NPGFPSYGNLQIPLANGNIMKIP 31 (63)
Q Consensus 9 ~~~~~~e~~vqiPle~g~vl~IP 31 (63)
=||+..+. |.|-+++|+++.|-
T Consensus 60 lPG~~~ed-i~v~v~~~~~l~i~ 81 (150)
T d1gmea_ 60 LPGVKKEE-VKVEVEDGNVLVVS 81 (150)
T ss_dssp CTTCCGGG-EEEEEETTTEEEEE
T ss_pred eCCCccCC-EEEEEEEccceeEE
Confidence 37887664 78888877776654
No 7
>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.90 E-value=1.1e+02 Score=16.33 Aligned_cols=34 Identities=18% Similarity=0.479 Sum_probs=22.5
Q ss_pred CCCCCeeeeecCCCCeeeecccccccchhcccccccee
Q psy13712 12 FPSYGNLQIPLANGNIMKIPVTSINISEEVNKTGIWKQ 49 (63)
Q Consensus 12 ~~~e~~vqiPle~g~vl~IPl~~INISDEM~KT~iWK~ 49 (63)
|-....-+|.|..|++|.| |.-.|.+...+=|+.
T Consensus 26 f~a~~~~eLs~~~Gd~v~v----l~~~d~~~~~~Ww~~ 59 (92)
T d1ug1a_ 26 FNAAQDLDVSLLEGDLVGV----IKKKDPMGSQNRWLI 59 (92)
T ss_dssp CCCCSSSCCCCCTTCEEEE----EESCCTTSCSSEEEE
T ss_pred cCCCCCCeEEEecccEEEE----EEcccccccCCceEE
Confidence 3344456889999998877 455566666675654
No 8
>d1ueba3 b.40.4.5 (A:127-184) Elongation factor P middle and C-terminal domains {Thermus thermophilus HB8 [TaxId: 300852]}
Probab=8.04 E-value=1.3e+02 Score=15.59 Aligned_cols=11 Identities=27% Similarity=0.893 Sum_probs=6.0
Q ss_pred cCCCCeeeecc
Q psy13712 22 LANGNIMKIPV 32 (63)
Q Consensus 22 le~g~vl~IPl 32 (63)
++.|-.+++|+
T Consensus 27 letG~~i~VP~ 37 (58)
T d1ueba3 27 LETGAVVQVPL 37 (58)
T ss_dssp ETTSCEEEEET
T ss_pred EcCCCEEEcCC
Confidence 45555555555
No 9
>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.49 E-value=60 Score=19.94 Aligned_cols=24 Identities=17% Similarity=0.390 Sum_probs=17.7
Q ss_pred CCCCCCCCCCeeeeecCCCCeeeecc
Q psy13712 7 SSNPGFPSYGNLQIPLANGNIMKIPV 32 (63)
Q Consensus 7 ~~~~~~~~e~~vqiPle~g~vl~IPl 32 (63)
|.--||...-++.-| +|++.|+=.
T Consensus 2 ~~~~~yd~~~t~Fsp--~Grl~QvEY 25 (245)
T d1irug_ 2 SIGTGYDLSASTFSP--DGRVFQVEY 25 (245)
T ss_dssp CCCSSTTSCTTCCCT--TSCCHHHHH
T ss_pred CCccccCCCCceECC--CCeehHHHH
Confidence 445588888888888 888888743
No 10
>d3cx5i1 f.23.14.1 (I:4-58) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.46 E-value=31 Score=18.20 Aligned_cols=12 Identities=50% Similarity=0.883 Sum_probs=10.0
Q ss_pred hhccccccceee
Q psy13712 39 EEVNKTGIWKQV 50 (63)
Q Consensus 39 DEM~KT~iWK~l 50 (63)
|.+||+-.||.|
T Consensus 38 e~~NkGKlWkDI 49 (55)
T d3cx5i1 38 ENHNKGKLWKDV 49 (55)
T ss_dssp HHHTTTTSHHHH
T ss_pred HhccCcccHHHH
Confidence 778899999875
Done!