RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13712
         (63 letters)



>3d4i_A STS-2 protein; PGM, 2H-phosphatase, PTP, SH3 domain, hydrolase;
           1.95A {Mus musculus} PDB: 3d6a_A 3db1_A
          Length = 273

 Score = 25.5 bits (55), Expect = 1.3
 Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 6/36 (16%)

Query: 27  IMKIPVTSINISEEVNKTGIWKQVNKGDKKVPPSKP 62
           + KIP   +   EE  + G W  VN      PP K 
Sbjct: 228 VRKIPSLGMCFCEENREDGKWDLVN------PPVKT 257


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 24.6 bits (53), Expect = 2.3
 Identities = 6/17 (35%), Positives = 9/17 (52%)

Query: 9   NPGFPSYGNLQIPLANG 25
           N   P+   ++I L NG
Sbjct: 357 NSHLPAGKQVEISLVNG 373


>3mbk_A Ubiquitin-associated and SH3 domain-containing PR; PGM, STS-1,
           signaling protein, low PH, alternative splicing,
           cytoplasm, nucleus, phosphoprotein; 1.35A {Mus musculus}
           PDB: 2ikq_A 2h0q_A
          Length = 264

 Score = 24.2 bits (52), Expect = 3.3
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 6/36 (16%)

Query: 27  IMKIPVTSINISEEVNKTGIWKQVNKGDKKVPPSKP 62
           + KIP       EE+ +TGIW+  +      PP  P
Sbjct: 219 VRKIPYLGFCSCEELGETGIWQLTD------PPILP 248


>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate
          aminotransferase, colitose, perosamine, O-antigen,
          pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia
          coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
          Length = 390

 Score = 23.7 bits (52), Expect = 4.5
 Identities = 3/16 (18%), Positives = 8/16 (50%)

Query: 25 GNIMKIPVTSINISEE 40
          G+++  P+ S    + 
Sbjct: 1  GHMINYPLASSTWDDL 16


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.308    0.130    0.385 

Gapped
Lambda     K      H
   0.267   0.0559    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 914,310
Number of extensions: 37120
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 5
Length of query: 63
Length of database: 6,701,793
Length adjustment: 34
Effective length of query: 29
Effective length of database: 5,752,479
Effective search space: 166821891
Effective search space used: 166821891
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 51 (23.8 bits)