RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13712
         (63 letters)



>g1or0.1 d.153.1.2 (A:,B:) Cephalosporin acylase {Pseudomonas sp.,
           glutarylamidase [TaxId: 306]}
          Length = 674

 Score = 25.6 bits (55), Expect = 0.37
 Identities = 6/34 (17%), Positives = 15/34 (44%), Gaps = 2/34 (5%)

Query: 1   MNPFSSSSNPGFPSYGNLQIPL-ANGNIMKIPVT 33
           +  + +S  PG   Y + QI   +  +  ++ + 
Sbjct: 625 LMSYGNSRQPGTTHYSD-QIERVSRADFRELLLR 657


>d1pp0a_ d.103.1.1 (A:) Volvatoxin A2 {Volvariella volvacea,
           different isoforms [TaxId: 36659]}
          Length = 194

 Score = 24.4 bits (53), Expect = 0.90
 Identities = 7/40 (17%), Positives = 15/40 (37%)

Query: 18  LQIPLANGNIMKIPVTSINISEEVNKTGIWKQVNKGDKKV 57
           +       +     VT+I I+ ++ +   W  +    KK 
Sbjct: 136 VPFGDNAPSYFYSLVTTILITADIEEKTGWWGLTSSTKKN 175


>d1eysl_ f.26.1.1 (L:) L (light) subunit {Thermochromatium tepidum
          [TaxId: 1050]}
          Length = 280

 Score = 22.4 bits (48), Expect = 5.3
 Identities = 9/25 (36%), Positives = 10/25 (40%)

Query: 1  MNPFSSSSNPGFPSYGNLQIPLANG 25
           N +  S  P   SYG    PL  G
Sbjct: 67 YNLWRISIAPPDLSYGLRMAPLTEG 91


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.308    0.130    0.385 

Gapped
Lambda     K      H
   0.267   0.0456    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 231,268
Number of extensions: 7679
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 4
Length of query: 63
Length of database: 2,407,596
Length adjustment: 32
Effective length of query: 31
Effective length of database: 1,968,236
Effective search space: 61015316
Effective search space used: 61015316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 47 (22.6 bits)