BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13714
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OU2|A Chain A, Acetyltransferase Domain Of Human Hiv-1 Tat Interacting
Protein, 60kda, Isoform 3
Length = 280
Score = 136 bits (343), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 60/80 (75%), Positives = 70/80 (87%)
Query: 7 MIKCNLKHPPGNEIYRKDSISFFEIDGRKNKNYAQNLCLLAKLFLDHKTLHYDTDPFLFY 66
+ KC+L+HPPGNEIYRK +ISFFEIDGRKNK+Y+QNLCLLAK FLDH TL+YDTDPFLFY
Sbjct: 54 LTKCDLRHPPGNEIYRKGTISFFEIDGRKNKSYSQNLCLLAKCFLDHXTLYYDTDPFLFY 113
Query: 67 IMTEQDSRGFHIVGIRKNDK 86
+MTE D +GFHIVG +K
Sbjct: 114 VMTEYDCKGFHIVGYFSKEK 133
>pdb|1MJ9|A Chain A, Crystal Structure Of Yeast Esa1(C304s) Mutant Complexed
With Coenzyme A
Length = 278
Score = 119 bits (298), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 63/81 (77%)
Query: 9 KCNLKHPPGNEIYRKDSISFFEIDGRKNKNYAQNLCLLAKLFLDHKTLHYDTDPFLFYIM 68
KC L+HPPGNEIYR D +SFFEIDGRK + + +NLCLL+KLFLDHKTL+YD DPFLFY M
Sbjct: 60 KCTLRHPPGNEIYRDDYVSFFEIDGRKQRTWCRNLCLLSKLFLDHKTLYYDVDPFLFYCM 119
Query: 69 TEQDSRGFHIVGIRKNDKTLA 89
T +D G H+VG +K A
Sbjct: 120 TRRDELGHHLVGYFSKEKESA 140
>pdb|1MJA|A Chain A, Crystal Structure Of Yeast Esa1 Histone Acetyltransferase
Domain Complexed With Acetyl Coenzyme A
Length = 278
Score = 119 bits (298), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 63/81 (77%)
Query: 9 KCNLKHPPGNEIYRKDSISFFEIDGRKNKNYAQNLCLLAKLFLDHKTLHYDTDPFLFYIM 68
KC L+HPPGNEIYR D +SFFEIDGRK + + +NLCLL+KLFLDHKTL+YD DPFLFY M
Sbjct: 60 KCTLRHPPGNEIYRDDYVSFFEIDGRKQRTWCRNLCLLSKLFLDHKTLYYDVDPFLFYCM 119
Query: 69 TEQDSRGFHIVGIRKNDKTLA 89
T +D G H+VG +K A
Sbjct: 120 TRRDELGHHLVGYFSKEKESA 140
>pdb|1MJB|A Chain A, Crystal Structure Of Yeast Esa1 Histone Acetyltransferase
E338q Mutant Complexed With Acetyl Coenzyme A
Length = 278
Score = 119 bits (298), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 63/81 (77%)
Query: 9 KCNLKHPPGNEIYRKDSISFFEIDGRKNKNYAQNLCLLAKLFLDHKTLHYDTDPFLFYIM 68
KC L+HPPGNEIYR D +SFFEIDGRK + + +NLCLL+KLFLDHKTL+YD DPFLFY M
Sbjct: 60 KCTLRHPPGNEIYRDDYVSFFEIDGRKQRTWCRNLCLLSKLFLDHKTLYYDVDPFLFYCM 119
Query: 69 TEQDSRGFHIVGIRKNDKTLA 89
T +D G H+VG +K A
Sbjct: 120 TRRDELGHHLVGYFSKEKESA 140
>pdb|1FY7|A Chain A, Crystal Structure Of Yeast Esa1 Histone Acetyltransferase
Domain Complexed With Coenzyme A
Length = 278
Score = 119 bits (298), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 63/81 (77%)
Query: 9 KCNLKHPPGNEIYRKDSISFFEIDGRKNKNYAQNLCLLAKLFLDHKTLHYDTDPFLFYIM 68
KC L+HPPGNEIYR D +SFFEIDGRK + + +NLCLL+KLFLDHKTL+YD DPFLFY M
Sbjct: 60 KCTLRHPPGNEIYRDDYVSFFEIDGRKQRTWCRNLCLLSKLFLDHKTLYYDVDPFLFYCM 119
Query: 69 TEQDSRGFHIVGIRKNDKTLA 89
T +D G H+VG +K A
Sbjct: 120 TRRDELGHHLVGYFSKEKESA 140
>pdb|3TO9|A Chain A, Crystal Structure Of Yeast Esa1 E338q Hat Domain Bound To
Coenzyme A With Active Site Lysine Acetylated
Length = 276
Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 52/81 (64%), Positives = 62/81 (76%)
Query: 9 KCNLKHPPGNEIYRKDSISFFEIDGRKNKNYAQNLCLLAKLFLDHKTLHYDTDPFLFYIM 68
KC L+HPPGNEIYR D +SFFEIDGRK + + +NLCLL+KLFLDH TL+YD DPFLFY M
Sbjct: 58 KCTLRHPPGNEIYRDDYVSFFEIDGRKQRTWCRNLCLLSKLFLDHXTLYYDVDPFLFYCM 117
Query: 69 TEQDSRGFHIVGIRKNDKTLA 89
T +D G H+VG +K A
Sbjct: 118 TRRDELGHHLVGYFSKEKESA 138
>pdb|3TO6|A Chain A, Crystal Structure Of Yeast Esa1 Hat Domain Complexed With
H4k16coa Bisubstrate Inhibitor
pdb|3TO7|A Chain A, Crystal Structure Of Yeast Esa1 Hat Domain Bound To
Coenzyme A With Active Site Lysine Acetylated
Length = 276
Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 52/81 (64%), Positives = 62/81 (76%)
Query: 9 KCNLKHPPGNEIYRKDSISFFEIDGRKNKNYAQNLCLLAKLFLDHKTLHYDTDPFLFYIM 68
KC L+HPPGNEIYR D +SFFEIDGRK + + +NLCLL+KLFLDH TL+YD DPFLFY M
Sbjct: 58 KCTLRHPPGNEIYRDDYVSFFEIDGRKQRTWCRNLCLLSKLFLDHXTLYYDVDPFLFYCM 117
Query: 69 TEQDSRGFHIVGIRKNDKTLA 89
T +D G H+VG +K A
Sbjct: 118 TRRDELGHHLVGYFSKEKESA 138
>pdb|2RC4|A Chain A, Crystal Structure Of The Hat Domain Of The Human Moz
Protein
Length = 287
Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 65/90 (72%), Gaps = 4/90 (4%)
Query: 1 MTSRDV----MIKCNLKHPPGNEIYRKDSISFFEIDGRKNKNYAQNLCLLAKLFLDHKTL 56
M SR + M KC HPP NEIYRK++IS FE+DG + Y QNLCLLAKLFLDHKTL
Sbjct: 47 MKSRTILQQHMKKCGWFHPPANEIYRKNNISVFEVDGNVSTIYCQNLCLLAKLFLDHKTL 106
Query: 57 HYDTDPFLFYIMTEQDSRGFHIVGIRKNDK 86
+YD +PFLFY++T+ D +G H+VG +K
Sbjct: 107 YYDVEPFLFYVLTQNDVKGCHLVGYFSKEK 136
>pdb|2OZU|A Chain A, Crystal Structure Of Human Myst Histone Acetyltransferase
3 In Complex With Acetylcoenzyme A
Length = 284
Score = 108 bits (270), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 64/90 (71%), Gaps = 4/90 (4%)
Query: 1 MTSRDV----MIKCNLKHPPGNEIYRKDSISFFEIDGRKNKNYAQNLCLLAKLFLDHKTL 56
M SR + M KC HPP NEIYRK++IS FE+DG + Y QNLCLLAKLFLDH TL
Sbjct: 51 MKSRTILQQHMKKCGWFHPPANEIYRKNNISVFEVDGNVSTIYCQNLCLLAKLFLDHXTL 110
Query: 57 HYDTDPFLFYIMTEQDSRGFHIVGIRKNDK 86
+YD +PFLFY++T+ D +G H+VG +K
Sbjct: 111 YYDVEPFLFYVLTQNDVKGCHLVGYFSKEK 140
>pdb|4DNC|A Chain A, Crystal Structure Of Human Mof In Complex With Msl1
pdb|4DNC|B Chain B, Crystal Structure Of Human Mof In Complex With Msl1
Length = 289
Score = 106 bits (264), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 60/78 (76%)
Query: 9 KCNLKHPPGNEIYRKDSISFFEIDGRKNKNYAQNLCLLAKLFLDHKTLHYDTDPFLFYIM 68
+C + PPG EIYRK +IS +E+DG+ +K Y QNLCLLAKLFLDH TL++D +PF+FYI+
Sbjct: 60 QCQWRQPPGKEIYRKSNISVYEVDGKDHKIYCQNLCLLAKLFLDHXTLYFDVEPFVFYIL 119
Query: 69 TEQDSRGFHIVGIRKNDK 86
TE D +G HIVG +K
Sbjct: 120 TEVDRQGAHIVGYFSKEK 137
>pdb|2Y0M|A Chain A, Crystal Structure Of The Complex Between Dosage
Compensation Factors Msl1 And Mof
Length = 287
Score = 106 bits (264), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 60/78 (76%)
Query: 9 KCNLKHPPGNEIYRKDSISFFEIDGRKNKNYAQNLCLLAKLFLDHKTLHYDTDPFLFYIM 68
+C + PPG EIYRK +IS +E+DG+ +K Y QNLCLLAKLFLDH TL++D +PF+FYI+
Sbjct: 58 QCQWRQPPGKEIYRKSNISVYEVDGKDHKIYCQNLCLLAKLFLDHXTLYFDVEPFVFYIL 117
Query: 69 TEQDSRGFHIVGIRKNDK 86
TE D +G HIVG +K
Sbjct: 118 TEVDRQGAHIVGYFSKEK 135
>pdb|3QAH|A Chain A, Crystal Structure Of Apo-Form Human Mof Catalytic Domain
Length = 304
Score = 106 bits (264), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 60/78 (76%)
Query: 9 KCNLKHPPGNEIYRKDSISFFEIDGRKNKNYAQNLCLLAKLFLDHKTLHYDTDPFLFYIM 68
+C + PPG EIYRK +IS +E+DG+ +K Y QNLCLLAKLFLDH TL++D +PF+FYI+
Sbjct: 84 QCQWRQPPGKEIYRKSNISVYEVDGKDHKIYCQNLCLLAKLFLDHXTLYFDVEPFVFYIL 143
Query: 69 TEQDSRGFHIVGIRKNDK 86
TE D +G HIVG +K
Sbjct: 144 TEVDRQGAHIVGYFSKEK 161
>pdb|2PQ8|A Chain A, Myst Histone Acetyltransferase 1
Length = 278
Score = 105 bits (261), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 60/78 (76%)
Query: 9 KCNLKHPPGNEIYRKDSISFFEIDGRKNKNYAQNLCLLAKLFLDHKTLHYDTDPFLFYIM 68
+C + PPG EIYRK +IS E+DG+ +K Y QNLCLLAKLFLDH+TL++D +PF+FYI+
Sbjct: 58 QCQWRQPPGKEIYRKSNISVHEVDGKDHKIYCQNLCLLAKLFLDHRTLYFDVEPFVFYIL 117
Query: 69 TEQDSRGFHIVGIRKNDK 86
TE D +G HIVG +K
Sbjct: 118 TEVDRQGAHIVGYFSKEK 135
>pdb|2GIV|A Chain A, Human Myst Histone Acetyltransferase 1
Length = 295
Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 59/78 (75%)
Query: 9 KCNLKHPPGNEIYRKDSISFFEIDGRKNKNYAQNLCLLAKLFLDHKTLHYDTDPFLFYIM 68
+C + PPG EIYRK +IS E+DG+ +K Y QNLCLLAKLFLDH TL++D +PF+FYI+
Sbjct: 75 QCQWRQPPGKEIYRKSNISVHEVDGKDHKIYCQNLCLLAKLFLDHXTLYFDVEPFVFYIL 134
Query: 69 TEQDSRGFHIVGIRKNDK 86
TE D +G HIVG +K
Sbjct: 135 TEVDRQGAHIVGYFSKEK 152
>pdb|3TOB|A Chain A, Human Mof E350q Crystal Structure With Active Site Lysine
Partially Acetylated
Length = 270
Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/79 (59%), Positives = 61/79 (77%), Gaps = 1/79 (1%)
Query: 9 KCNLKHPPGNEIYRKDSISFFEIDGRKNKNYAQNLCLLAKLFLDH-KTLHYDTDPFLFYI 67
+C + PPG EIYRK +IS +E+DG+ +K Y QNLCLLAKLFLDH KTL++D +PF+FYI
Sbjct: 53 QCQWRQPPGKEIYRKSNISVYEVDGKDHKIYCQNLCLLAKLFLDHXKTLYFDVEPFVFYI 112
Query: 68 MTEQDSRGFHIVGIRKNDK 86
+TE D +G HIVG +K
Sbjct: 113 LTEVDRQGAHIVGYFSKEK 131
>pdb|3TOA|A Chain A, Human Mof Crystal Structure With Active Site Lysine
Partially Acetylated
Length = 266
Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/79 (59%), Positives = 61/79 (77%), Gaps = 1/79 (1%)
Query: 9 KCNLKHPPGNEIYRKDSISFFEIDGRKNKNYAQNLCLLAKLFLDH-KTLHYDTDPFLFYI 67
+C + PPG EIYRK +IS +E+DG+ +K Y QNLCLLAKLFLDH KTL++D +PF+FYI
Sbjct: 53 QCQWRQPPGKEIYRKSNISVYEVDGKDHKIYCQNLCLLAKLFLDHXKTLYFDVEPFVFYI 112
Query: 68 MTEQDSRGFHIVGIRKNDK 86
+TE D +G HIVG +K
Sbjct: 113 LTEVDRQGAHIVGYFSKEK 131
>pdb|1TKI|A Chain A, Autoinhibited Serine Kinase Domain Of The Giant Muscle
Protein Titin
pdb|1TKI|B Chain B, Autoinhibited Serine Kinase Domain Of The Giant Muscle
Protein Titin
Length = 321
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 16 PGNEIYRKDSISFFEIDGRKNKNYAQNLCLLAKLFLDHKTLHYDTDP 62
G +I+ + + S FE++ R+ +Y +C + H H+D P
Sbjct: 84 SGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHNIGHFDIRP 130
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 35 KNKNYAQNLCLLAKLFLDHKTLHYDTDPFLFYIMTEQ--DSRGFHIVGIRKNDKTL 88
K+ +Q +CL + ++ HK L DP + +M E+ DS + G+ K K +
Sbjct: 105 KDLKASQRVCLRSDSYMLHKVLENKADPLVSLMMVEKVPDSTYDMVGGLTKQIKEI 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.143 0.458
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,655,706
Number of Sequences: 62578
Number of extensions: 125903
Number of successful extensions: 318
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 298
Number of HSP's gapped (non-prelim): 18
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)