RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13714
(125 letters)
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural
genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo
sapiens}
Length = 280
Score = 132 bits (334), Expect = 1e-39
Identities = 68/119 (57%), Positives = 84/119 (70%), Gaps = 10/119 (8%)
Query: 7 MIKCNLKHPPGNEIYRKDSISFFEIDGRKNKNYAQNLCLLAKLFLDHKTLHYDTDPFLFY 66
+ KC+L+HPPGNEIYRK +ISFFEIDGRKNK+Y+QNLCLLAK FLDHKTL+YDTDPFLFY
Sbjct: 54 LTKCDLRHPPGNEIYRKGTISFFEIDGRKNKSYSQNLCLLAKCFLDHKTLYYDTDPFLFY 113
Query: 67 IMTEQDSRGFHIVGIRKNDKTLAAQLLLLWSSSESVYIAWIVRLPWFDPRPRVDFILNR 125
+MTE D +GFHIVG +K S+E +A I+ LP + R ++
Sbjct: 114 VMTEYDCKGFHIVGYFSKEK----------ESTEDYNVACILTLPPYQRRGYGKLLIEF 162
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics,
structural genomics consortium, SGC; HET: COA; 1.45A
{Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A*
3tob_A*
Length = 278
Score = 130 bits (327), Expect = 1e-38
Identities = 46/81 (56%), Positives = 61/81 (75%)
Query: 7 MIKCNLKHPPGNEIYRKDSISFFEIDGRKNKNYAQNLCLLAKLFLDHKTLHYDTDPFLFY 66
+ +C + PPG EIYRK +IS E+DG+ +K Y QNLCLLAKLFLDH+TL++D +PF+FY
Sbjct: 56 LGQCQWRQPPGKEIYRKSNISVHEVDGKDHKIYCQNLCLLAKLFLDHRTLYFDVEPFVFY 115
Query: 67 IMTEQDSRGFHIVGIRKNDKT 87
I+TE D +G HIVG +K
Sbjct: 116 ILTEVDRQGAHIVGYFSKEKE 136
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G
consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Length = 284
Score = 126 bits (318), Expect = 4e-37
Identities = 49/80 (61%), Positives = 61/80 (76%)
Query: 7 MIKCNLKHPPGNEIYRKDSISFFEIDGRKNKNYAQNLCLLAKLFLDHKTLHYDTDPFLFY 66
M KC HPP NEIYRK++IS FE+DG + Y QNLCLLAKLFLDHKTL+YD +PFLFY
Sbjct: 61 MKKCGWFHPPANEIYRKNNISVFEVDGNVSTIYCQNLCLLAKLFLDHKTLYYDVEPFLFY 120
Query: 67 IMTEQDSRGFHIVGIRKNDK 86
++T+ D +G H+VG +K
Sbjct: 121 VLTQNDVKGCHLVGYFSKEK 140
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A
{Saccharomyces cerevisiae} PDB: 3to6_A* 1fy7_A* 1mja_A*
1mjb_A* 3to9_A* 1mj9_A*
Length = 276
Score = 125 bits (314), Expect = 9e-37
Identities = 56/104 (53%), Positives = 71/104 (68%), Gaps = 10/104 (9%)
Query: 10 CNLKHPPGNEIYRKDSISFFEIDGRKNKNYAQNLCLLAKLFLDHKTLHYDTDPFLFYIMT 69
C L+HPPGNEIYR D +SFFEIDGRK + + +NLCLL+KLFLDHKTL+YD DPFLFY MT
Sbjct: 59 CTLRHPPGNEIYRDDYVSFFEIDGRKQRTWCRNLCLLSKLFLDHKTLYYDVDPFLFYCMT 118
Query: 70 EQDSRGFHIVGIRKNDKTLAAQLLLLWSSSESVYIAWIVRLPWF 113
+D G H+VG +K S++ +A I+ LP +
Sbjct: 119 RRDELGHHLVGYFSKEKE----------SADGYNVACILTLPQY 152
>1bob_A HAT1, histone acetyltransferase; histone modification, acetyl
coenzyme A binding-protein; HET: ACO; 2.30A
{Saccharomyces cerevisiae} SCOP: d.108.1.1
Length = 320
Score = 28.8 bits (64), Expect = 0.49
Identities = 8/69 (11%), Positives = 25/69 (36%), Gaps = 7/69 (10%)
Query: 15 PPGNEI--YRKDSISFF----EIDGRKNKNYAQNLCLLAKLFLDHKTLHYDTDP-FLFYI 67
++ Y + F + + + + + + LF++ +TDP + Y
Sbjct: 119 DVFEKVSEYSLNGEEFVVYKSSLVDDFARRMHRRVQIFSLLFIEAANYIDETDPSWQIYW 178
Query: 68 MTEQDSRGF 76
+ + ++
Sbjct: 179 LLNKKTKEL 187
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 0.90
Identities = 14/124 (11%), Positives = 31/124 (25%), Gaps = 29/124 (23%)
Query: 1 MTSRDVMIKCNLKHPPGNEIYRKDSISFFEIDGRKNKNYA-----QNLCLLAKLFLDHKT 55
++C + +I+ ++ N Q L ++
Sbjct: 169 DVCLSYKVQCKM----DFKIFW---LNL----KNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 56 LHYDTDPFLFYIMTEQDSRGFHIVGIRKNDKTLAAQLLLLWSSSESVYIAWIVRLPWFDP 115
H + + + R K LL+L +V A F+
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLK-------SKPYENCLLVL----LNVQNAKAWNA--FNL 264
Query: 116 RPRV 119
++
Sbjct: 265 SCKI 268
>2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier
protein, holo, phosphopantetheine, transport protein;
HET: PNS; NMR {Aspergillus parasiticus}
Length = 89
Score = 26.4 bits (58), Expect = 1.4
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 24 DSISFFEIDGRKNKNYAQNLCLLAKLFLDHKTL 56
DS+S I R ++ +L LF+D T+
Sbjct: 43 DSLSSMVIGSRFREDLGLDLGPEFSLFIDCTTV 75
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently
linked comple supercoiling; HET: DNA PTR TSP; 2.48A
{Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A
2rgr_A*
Length = 757
Score = 25.4 bits (55), Expect = 8.1
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 57 HYDTDPFLFY----IMTEQDSRGFHIVGIRKN 84
Y+ L Y IMT+QD G HI G+ N
Sbjct: 89 KYEDTKSLRYGHLMIMTDQDHDGSHIKGLIIN 120
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein;
protein structure initiative II(PSI II), nysgxrc; 1.90A
{Streptococcus thermophilus lmg 18311}
Length = 268
Score = 25.0 bits (55), Expect = 8.8
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 11/45 (24%)
Query: 59 DTDPFLFYIMTEQDSRGFHI-----------VGIRKNDKTLAAQL 92
D +Y+ +++ VG RK DKTL ++
Sbjct: 182 DRVYANYYLEKSGVLDQYNVMPAGYEGESFAVGARKVDKTLIKKI 226
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.141 0.450
Gapped
Lambda K H
0.267 0.0575 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,929,635
Number of extensions: 99265
Number of successful extensions: 260
Number of sequences better than 10.0: 1
Number of HSP's gapped: 259
Number of HSP's successfully gapped: 16
Length of query: 125
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 43
Effective length of database: 4,412,271
Effective search space: 189727653
Effective search space used: 189727653
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.8 bits)