RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13714
         (125 letters)



>d2ozua1 d.108.1.1 (A:507-776) Histone acetyltransferase MYST3
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 270

 Score =  130 bits (328), Expect = 3e-39
 Identities = 49/80 (61%), Positives = 61/80 (76%)

Query: 7   MIKCNLKHPPGNEIYRKDSISFFEIDGRKNKNYAQNLCLLAKLFLDHKTLHYDTDPFLFY 66
           M KC   HPP NEIYRK++IS FE+DG  +  Y QNLCLLAKLFLDHKTL+YD +PFLFY
Sbjct: 51  MKKCGWFHPPANEIYRKNNISVFEVDGNVSTIYCQNLCLLAKLFLDHKTLYYDVEPFLFY 110

Query: 67  IMTEQDSRGFHIVGIRKNDK 86
           ++T+ D +G H+VG    +K
Sbjct: 111 VLTQNDVKGCHLVGYFSKEK 130


>d1fy7a_ d.108.1.1 (A:) Histone acetyltransferase ESA1 {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 273

 Score =  129 bits (326), Expect = 6e-39
 Identities = 57/107 (53%), Positives = 72/107 (67%), Gaps = 10/107 (9%)

Query: 7   MIKCNLKHPPGNEIYRKDSISFFEIDGRKNKNYAQNLCLLAKLFLDHKTLHYDTDPFLFY 66
             KC L+HPPGNEIYR D +SFFEIDGRK + + +NLCLL+KLFLDHKTL+YD DPFLFY
Sbjct: 54  RKKCTLRHPPGNEIYRDDYVSFFEIDGRKQRTWCRNLCLLSKLFLDHKTLYYDVDPFLFY 113

Query: 67  IMTEQDSRGFHIVGIRKNDKTLAAQLLLLWSSSESVYIAWIVRLPWF 113
            MT +D  G H+VG    +K           S++   +A I+ LP +
Sbjct: 114 CMTRRDELGHHLVGYFSKEKE----------SADGYNVACILTLPQY 150


>d2giva1 d.108.1.1 (A:4-274) Probable histone acetyltransferase
           MYST1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 271

 Score =  127 bits (321), Expect = 4e-38
 Identities = 47/84 (55%), Positives = 59/84 (70%), Gaps = 4/84 (4%)

Query: 1   MTSRDVMI----KCNLKHPPGNEIYRKDSISFFEIDGRKNKNYAQNLCLLAKLFLDHKTL 56
           M           +C  + PPG EIYRK +IS  E+DG+ +K Y QNLCLLAKLFLDHKTL
Sbjct: 41  MKYEKSYRFHLGQCQWRQPPGKEIYRKSNISVHEVDGKDHKIYCQNLCLLAKLFLDHKTL 100

Query: 57  HYDTDPFLFYIMTEQDSRGFHIVG 80
           ++D +PF+FYI+TE D +G HIVG
Sbjct: 101 YFDVEPFVFYILTEVDRQGAHIVG 124


>d1boba_ d.108.1.1 (A:) Histone acetyltransferase HAT1 {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 315

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 5/44 (11%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 37  KNYAQNLCLLAKLFLDHKTLHYDTDPFLFYIMTEQDSRGFHIVG 80
           +   + + + + LF++      D     + I    + +   ++G
Sbjct: 142 RRMHRRVQIFSLLFIEAANY-IDETDPSWQIYWLLNKKTKELIG 184


>d1iapa_ a.91.1.1 (A:) p115RhoGEF {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 190

 Score = 25.1 bits (55), Expect = 2.5
 Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 6/36 (16%)

Query: 41 QNLCLLAK------LFLDHKTLHYDTDPFLFYIMTE 70
          Q+L  + +        L H  L ++  P L  +  +
Sbjct: 4  QSLEQVKRRPAHLMALLQHVALQFEPGPLLCCLHAD 39


>d1ylxa1 d.82.5.1 (A:1-100) Hypothetical protein, GK1464 ortholog
          {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 100

 Score = 23.7 bits (51), Expect = 4.9
 Identities = 9/25 (36%), Positives = 11/25 (44%)

Query: 15 PPGNEIYRKDSISFFEIDGRKNKNY 39
           P  E Y  D +  FE  G  N+ Y
Sbjct: 18 EPMMEAYGLDQVGIFEEHGEGNRYY 42


>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
           (residues 410-1202) {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 760

 Score = 24.4 bits (52), Expect = 5.2
 Identities = 8/12 (66%), Positives = 9/12 (75%)

Query: 67  IMTEQDSRGFHI 78
           IMT+QD  G HI
Sbjct: 105 IMTDQDHDGSHI 116


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.141    0.450 

Gapped
Lambda     K      H
   0.267   0.0636    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 481,278
Number of extensions: 19657
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 9
Length of query: 125
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 50
Effective length of database: 1,377,846
Effective search space: 68892300
Effective search space used: 68892300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (22.5 bits)